Query 019927
Match_columns 334
No_of_seqs 118 out of 130
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu1_A DSRBP-ZFA, RNA binding 96.4 0.002 6.8E-08 53.7 3.5 37 32-68 90-126 (127)
2 1zr9_A Zinc finger protein 593 94.7 0.015 5.1E-07 49.3 2.7 39 31-69 46-84 (124)
3 3eph_A TRNA isopentenyltransfe 94.3 0.022 7.6E-07 56.5 3.2 37 34-70 359-401 (409)
4 1zu1_A DSRBP-ZFA, RNA binding 94.0 0.023 8E-07 47.2 2.4 35 35-69 32-66 (127)
5 3cw1_L U1 small nuclear ribonu 79.8 1 3.4E-05 35.3 2.5 32 36-67 4-37 (77)
6 2yrk_A Zinc finger homeobox pr 79.4 1.1 3.9E-05 33.0 2.6 35 35-69 13-47 (55)
7 4dgw_A PRE-mRNA-splicing facto 73.6 1.3 4.4E-05 43.9 2.0 38 31-68 288-325 (402)
8 2xus_A Breast cancer metastasi 38.0 53 0.0018 23.6 4.7 32 261-293 16-47 (49)
9 3gs2_B Chromobox protein homol 22.2 31 0.001 22.4 1.0 10 206-215 19-28 (30)
10 2cs3_A Protein C14ORF4, MY039 21.0 41 0.0014 26.9 1.7 20 27-46 7-26 (93)
No 1
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.39 E-value=0.002 Score=53.74 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCCceeecccccccCcchhHHhhCChhHHHHHHHHh
Q 019927 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (334)
Q Consensus 32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk 68 (334)
..+.+.|.+|++.+.++..+..|+.||.|+.++.+++
T Consensus 90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~ 126 (127)
T 1zu1_A 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126 (127)
T ss_dssp CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence 4678899999999999999999999999999998764
No 2
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=94.72 E-value=0.015 Score=49.25 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCCCCceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (334)
Q Consensus 31 n~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (334)
+..|+..|..|+....+++.+..|.+||.|+.++..|+.
T Consensus 46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 356899999999999999999999999999999999873
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.25 E-value=0.022 Score=56.51 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=32.0
Q ss_pred CCceeecccc------cccCcchhHHhhCChhHHHHHHHHhhh
Q 019927 34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG 70 (334)
Q Consensus 34 GqL~C~lC~~------~vksEslW~aH~~Sk~Hr~~~~~lk~~ 70 (334)
-+-+|-+|+. .+-.|--|..|+.|+.||.++.+.++-
T Consensus 359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~ 401 (409)
T 3eph_A 359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ 401 (409)
T ss_dssp CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3458999997 788899999999999999999987653
No 4
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=94.02 E-value=0.023 Score=47.22 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.4
Q ss_pred CceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (334)
Q Consensus 35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (334)
.+.|.+|++.+.+++.=.+|..|+.|+.+|..+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999987764
No 5
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=79.80 E-value=1 Score=35.28 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=27.0
Q ss_pred ceeecccccccCc--chhHHhhCChhHHHHHHHH
Q 019927 36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI 67 (334)
Q Consensus 36 L~C~lC~~~vksE--slW~aH~~Sk~Hr~~~~~l 67 (334)
--|--|+.-|.+. +.|..|+.|++|+.|+...
T Consensus 4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y 37 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37 (77)
T ss_pred cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence 4699999999555 4589999999999999873
No 6
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=79.44 E-value=1.1 Score=33.01 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=29.1
Q ss_pred CceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (334)
Q Consensus 35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (334)
++.|.+|++.--+-.--.-|+.|++|-.+|..+-+
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~ 47 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG 47 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred CccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence 48999999887666678899999999998886543
No 7
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=73.55 E-value=1.3 Score=43.95 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCCCCceeecccccccCcchhHHhhCChhHHHHHHHHh
Q 019927 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (334)
Q Consensus 31 n~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk 68 (334)
+..+.+-|..|....+++.+-.+|+.||+|..++++.+
T Consensus 288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k 325 (402)
T 4dgw_A 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR 325 (402)
T ss_dssp ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSH
T ss_pred CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHH
Confidence 35678999999999999999999999999999887654
No 8
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=37.95 E-value=53 Score=23.55 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=24.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019927 261 AAEMIEEYESVDQKTFREKVEALRKKKMEWEAA 293 (334)
Q Consensus 261 a~~ere~~eidEQi~~~~RV~~L~~kk~~~~~~ 293 (334)
+..+++-.++-||+ |..|+..|++++++++..
T Consensus 16 ~~LEkqF~~LkEql-Y~ERl~ql~~~Leel~~g 47 (49)
T 2xus_A 16 LDLEKQFSELKEKL-FRERLSQLRLRLEEVGAE 47 (49)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcc
Confidence 44456666778886 889999999999998754
No 9
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=22.22 E-value=31 Score=22.42 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 019927 206 GALPEGFFDN 215 (334)
Q Consensus 206 ~~LPeGFFDD 215 (334)
-..|+|||-+
T Consensus 19 ~~~p~gff~~ 28 (30)
T 3gs2_B 19 AQAAEGFFRD 28 (30)
T ss_dssp ESCSTTTSCC
T ss_pred cCCCcccccc
Confidence 3479999975
No 10
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=21.03 E-value=41 Score=26.87 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=14.9
Q ss_pred ccccCCCCCceeeccccccc
Q 019927 27 LVRYNEFDQPVCRVCDVVLK 46 (334)
Q Consensus 27 ~A~Yn~~GqL~C~lC~~~vk 46 (334)
-..-+....|.|+||+..+-
T Consensus 7 ~~~~~~~a~l~CtlC~erLE 26 (93)
T 2cs3_A 7 GSPMANSGPLCCTICHERLE 26 (93)
T ss_dssp SCSSCSCCSCCCSSSCSCCS
T ss_pred CCCCCCCCeeEeecchhhhc
Confidence 33445778999999997764
Done!