BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019928
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 139/259 (53%), Gaps = 16/259 (6%)
Query: 78 ELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE 137
+++ + +FDCDGV+W G++ + G PE L+ L GK +FV+NNS ++R + +F
Sbjct: 16 DVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFA 75
Query: 138 TLGLT-VTEEEIXXXXXXXXXYLKS-IDFPKDKK--VYVVGEDGILKELELAGFQYLGGP 193
LG + E++ L+ + P D V+V+G +G+ EL AG + G P
Sbjct: 76 RLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEGLRAELRAAGLRLAGDP 135
Query: 194 EDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAV 253
G V AV+VG+D +F++ K++ +R +P CL +AT+RD
Sbjct: 136 SAGDGAA-----------PRVRAVLVGYDEHFSFAKLREACAHLR-DPECLLVATDRDPW 183
Query: 254 THLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLD 313
L+D G GS+ A ++ R+ LVVGKPS +M + + F I ++ MVGDRL+
Sbjct: 184 HPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYMFECITENFSIDPARTLMVGDRLE 243
Query: 314 TDILFGQNGGCKTLLVLSG 332
TDILFG G T+L L+G
Sbjct: 244 TDILFGHRCGMTTVLTLTG 262
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 143/273 (52%), Gaps = 18/273 (6%)
Query: 66 ASASAQPLKNA--DELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 123
A A + L+ A +++ + +FDCDGV+W G++ + G PE L+ L GK +FV+N
Sbjct: 2 AXARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSN 61
Query: 124 NSTKSRKQYGKKFETLGLT-VTEEEIXXXXXXXXXYLKS-IDFPKDKK--VYVVGEDGIL 179
NS ++R + +F LG + E++ L+ + P D V+V+G +G+
Sbjct: 62 NSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEGLR 121
Query: 180 KELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRE 239
EL AG + G P G V AV+VG+D +F++ K++ +R
Sbjct: 122 AELRAAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFSFAKLREACAHLR- 169
Query: 240 NPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG 299
+P CL +AT+RD L+D G GS+ A ++ R+ LVVGKPS + + + F
Sbjct: 170 DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYXFECITENFS 229
Query: 300 IQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 332
I ++ VGDRL+TDILFG G T+L L+G
Sbjct: 230 IDPARTLXVGDRLETDILFGHRCGXTTVLTLTG 262
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 137/259 (52%), Gaps = 16/259 (6%)
Query: 78 ELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE 137
+++ + +FDCDGV+W G++ + G PE L+ L GK +FV+NNS ++R + +F
Sbjct: 16 DVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFA 75
Query: 138 TLGLT-VTEEEIXXXXXXXXXYLKS-IDFPKDKK--VYVVGEDGILKELELAGFQYLGGP 193
LG + E++ L+ + P D V+V+G +G+ EL AG + G P
Sbjct: 76 RLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEGLRAELRAAGLRLAGDP 135
Query: 194 EDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAV 253
G V AV+VG+D +F++ K++ +R +P CL +AT+RD
Sbjct: 136 SAGDGAA-----------PRVRAVLVGYDEHFSFAKLREACAHLR-DPECLLVATDRDPW 183
Query: 254 THLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLD 313
L+D G GS+ A ++ R+ LVVGKPS + + + F I ++ VGDRL+
Sbjct: 184 HPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYXFECITENFSIDPARTLXVGDRLE 243
Query: 314 TDILFGQNGGCKTLLVLSG 332
TDILFG G T+L L+G
Sbjct: 244 TDILFGHRCGXTTVLTLTG 262
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 20/249 (8%)
Query: 85 TFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT 144
IFD DGV+++G++ I GV E ++ L+ +G F+TNNSTK+ + Y +K +G+ V+
Sbjct: 3 AIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS 62
Query: 145 EEEIXXXXXXXXXYL-KSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELK 203
I Y+ K +D K++V+G +G++KE++ G+ + E +
Sbjct: 63 SSIIITSGLATRLYMSKHLD---PGKIFVIGGEGLVKEMQALGWGIV-------TLDEAR 112
Query: 204 PGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWA 263
G K+V VVVG D Y K++Y TL IR G FI TN DA T + +
Sbjct: 113 QGSW----KEVKHVVVGLDPDLTYEKLKYATLAIRN--GATFIGTNPDA-TLPGEEGIYP 165
Query: 264 GGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 323
G GS++ A +T EP+++GKP+ M + + F ++ MVGDRLDTDI F + G
Sbjct: 166 GAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMF--PGEELWMVGDRLDTDIAFAKKFG 223
Query: 324 CKTLLVLSG 332
K ++VL+G
Sbjct: 224 MKAIMVLTG 232
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 25/247 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG ++ G + I+ E + L+ +G +FVTNNS+++ KQ K + + TE
Sbjct: 9 YLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATE 68
Query: 146 EEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPG 205
E++ ++ KD VYV+GE+GI + +E G + GG+ +
Sbjct: 69 EQVFTTSMATAQHIAQQK--KDASVYVIGEEGIRQAIEENGLTF------GGENADF--- 117
Query: 206 FLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGG 265
VVVG DR Y K G L IR G FI+TN D + T+ G
Sbjct: 118 -----------VVVGIDRSITYEKFAVGCLAIRN--GARFISTNGD-IAIPTERGLLPGN 163
Query: 266 GSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 325
GS+ ST +P+ +GKP + +M+ G S+ MVGD TDI+ G N G
Sbjct: 164 GSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMD 223
Query: 326 TLLVLSG 332
TLLV +G
Sbjct: 224 TLLVHTG 230
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 27/249 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
+I D DGVI K I E + L+ GK+++FV+NNST+SR+ ++ + GL V E
Sbjct: 11 YIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGE 70
Query: 146 EEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPG 205
+EI ++ + P + KV+ GE+G+++EL LAG +
Sbjct: 71 DEILVATYATARFIAR-EKP-NAKVFTTGEEGLIEELRLAGLE----------------- 111
Query: 206 FLMEHDKDVGAVVVGFDRYFNY-YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAG 264
++++D + +VVG +R N+ + C+R G +IATN D + D G
Sbjct: 112 -IVDYD-EAEYLVVGSNRKINFELXTKALRACLR---GIRYIATNPDRIFPAEDGP-IPG 165
Query: 265 GGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 323
G ++GA T REP +VVGKPS + + G+ + +VGD++D D+ G+ G
Sbjct: 166 TGXIIGALYWXTGREPDVVVGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIG 225
Query: 324 CKTLLVLSG 332
+T+LVL+G
Sbjct: 226 AETVLVLTG 234
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 128/256 (50%), Gaps = 26/256 (10%)
Query: 79 LIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 138
++D +E FI D DG + D L+ G E L+ L+ K KR VF TNNS+ + Y +K
Sbjct: 13 VLDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRN 72
Query: 139 LGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGK 198
G+ V ++ + + + LK LG P+ K
Sbjct: 73 XGVDVPDDAVVTSGE-------------------ITAEHXLKRFGRCRIFLLGTPQ--LK 111
Query: 199 KIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTD 258
K+ G +++ +++ VV+GFD+ Y +++ + +R+ G +IAT+ D + +
Sbjct: 112 KVFEAYGHVID-EENPDFVVLGFDKTLTYERLKKACILLRK--GKFYIATHPD-INCPSK 167
Query: 259 AQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDIL 317
GS+ A ST R+P L+ GKP+ ++D ++ KFG+ K + VGDRL TD+
Sbjct: 168 EGPVPDAGSIXAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERXAXVGDRLYTDVK 227
Query: 318 FGQNGGCKTLLVLSGK 333
G+N G ++LVL+G+
Sbjct: 228 LGKNAGIVSILVLTGE 243
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 26/255 (10%)
Query: 80 IDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETL 139
+D +E FI D DG + D L+ G E L+ L+ K KR VF TNNS+ + Y +K
Sbjct: 2 LDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNX 61
Query: 140 GLTVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKK 199
G+ V ++ + + + LK LG P+ KK
Sbjct: 62 GVDVPDDAVVTSGE-------------------ITAEHXLKRFGRCRIFLLGTPQ--LKK 100
Query: 200 IELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA 259
+ G +++ +++ VV+GFD+ Y +++ + +R+ G +IAT+ D + +
Sbjct: 101 VFEAYGHVID-EENPDFVVLGFDKTLTYERLKKACILLRK--GKFYIATHPD-INCPSKE 156
Query: 260 QEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILF 318
GS+ A ST R+P L+ GKP+ ++D ++ KFG+ K + VGDRL TD+
Sbjct: 157 GPVPDAGSIXAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERXAXVGDRLYTDVKL 216
Query: 319 GQNGGCKTLLVLSGK 333
G+N G ++LVL+G+
Sbjct: 217 GKNAGIVSILVLTGE 231
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 119/248 (47%), Gaps = 26/248 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVT 144
++ D DG I+ G + I ++ L+ K +FVTNN+TKS + ++ + V
Sbjct: 8 YLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVP 67
Query: 145 EEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKP 204
+ Y+K + + KKV+V+GE G++ + AGF++ E P
Sbjct: 68 ASLVYTATLATIDYMKEAN--RGKKVFVIGEAGLIDLILEAGFEW----------DETNP 115
Query: 205 GFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAG 264
+ VVVG D +Y KV TL I++ G LFI TN D T+ G
Sbjct: 116 DY----------VVVGLDTELSYEKVVLATLAIQK--GALFIGTNPDKNIP-TERGLLPG 162
Query: 265 GGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 324
GS+V +TQ +P+ +GKP +M+ G++K Q+ MVGD +TDI G G
Sbjct: 163 AGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGI 222
Query: 325 KTLLVLSG 332
+LLV SG
Sbjct: 223 DSLLVTSG 230
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 25/247 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG I+KG I ++ L+ KG + VTNN+T++ + + +
Sbjct: 8 YLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPL 67
Query: 146 EEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPG 205
E I Y+ D + K YV+GE+G+ K + AG+
Sbjct: 68 ETIYTATMATVDYMN--DMNRGKTAYVIGEEGLKKAIADAGY------------------ 107
Query: 206 FLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGG 265
+E K+ VVVG D Y K+ TL I+ G LFI TN D + T+ G
Sbjct: 108 --VEDTKNPAYVVVGLDWNVTYDKLATATLAIQN--GALFIGTNPD-LNIPTERGLLPGA 162
Query: 266 GSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 325
GS+ +T+ +P+ +GKP+ +M+ I ++Q MVGD TDI+ G N
Sbjct: 163 GSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDID 222
Query: 326 TLLVLSG 332
TLLV +G
Sbjct: 223 TLLVTTG 229
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 26/248 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVT 144
++ D DG I+KG I + + L+ + + VTNN+T++ + + T +
Sbjct: 6 YLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTP 65
Query: 145 EEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKP 204
E I Y+ D + K YV+GE G+ K + AG++
Sbjct: 66 LETIYTATLATIDYMN--DMKRGKTAYVIGETGLKKAVAEAGYR---------------- 107
Query: 205 GFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAG 264
E ++ VVVG D Y K+ TL I++ G +FI TN D + T+ G
Sbjct: 108 ----EDSENPAYVVVGLDTNLTYEKLTLATLAIQK--GAVFIGTNPD-LNIPTERGLLPG 160
Query: 265 GGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 324
G+++ +T+ +P+++GKP +M+ ++ G+++ + MVGD TDI G
Sbjct: 161 AGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDI 220
Query: 325 KTLLVLSG 332
TLLV +G
Sbjct: 221 ATLLVTTG 228
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 29/251 (11%)
Query: 82 SVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 141
+++ I D DGV+ + + G E L + KG LV +TN +++ + +F T G+
Sbjct: 2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61
Query: 142 TVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIE 201
V + +L+ + KK YVVGE ++ EL AGF +
Sbjct: 62 DVPDSVFYTSAMATADFLRR---QEGKKAYVVGEGALIHELYKAGFTI----------TD 108
Query: 202 LKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQE 261
+ P F V+VG R +N+ + + G FIATN D TH
Sbjct: 109 VNPDF----------VIVGETRSYNWDMMHKAAYFVAN--GARFIATNPD--TH--GRGF 152
Query: 262 WAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 321
+ G++ + R+P VGKPS +++ NK + +VGD L TDIL G
Sbjct: 153 YPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQ 212
Query: 322 GGCKTLLVLSG 332
G +T+LVLSG
Sbjct: 213 AGLETILVLSG 223
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 26/248 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKF-ETLGLTVT 144
++ D DG I+KG I + L+ + +FVTNN+T++ + + + +
Sbjct: 6 YLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTP 65
Query: 145 EEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKP 204
+ Y+ D +K VYVVGE G+ + ++ AG+ ED + KP
Sbjct: 66 LSTVYTATLATIDYMN--DLGLEKTVYVVGEAGLKEAIKAAGYV-----ED-----KEKP 113
Query: 205 GFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAG 264
+ VVVG D +Y K TL I++ G FI TN D + T+ G
Sbjct: 114 AY----------VVVGLDWQVDYEKFATATLAIQK--GAHFIGTNPD-LNIPTERGLLPG 160
Query: 265 GGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 324
GS++ +T+ +P+ +GKP+ +MD G+++ ++ MVGD TDI G + G
Sbjct: 161 AGSLITLLEVATRVKPVYIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGI 220
Query: 325 KTLLVLSG 332
TLLV +G
Sbjct: 221 PTLLVTTG 228
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 26/248 (10%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVT 144
++ D DG I++G I + L+ +G + VTNN+T++ + + +
Sbjct: 6 YLIDLDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVQSMLANQFHVETS 65
Query: 145 EEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKP 204
E I Y+ D + K YV+GE G+ + AG+
Sbjct: 66 IETIYTATMATVDYMN--DMNRGKTAYVIGETGLKSAIAAAGY----------------- 106
Query: 205 GFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAG 264
+E ++ VVVG D Y + TL I++ G LFI TN D + T+ G
Sbjct: 107 ---VEELENPAYVVVGLDSQVTYEMLAIATLAIQK--GALFIGTNPD-LNIPTERGLMPG 160
Query: 265 GGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 324
G++ +T+ +P+ +GKP+ +M+ GIQ+S+ MVGD TDI+ G
Sbjct: 161 AGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDI 220
Query: 325 KTLLVLSG 332
T+LV +G
Sbjct: 221 ATILVTTG 228
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 112/261 (42%), Gaps = 20/261 (7%)
Query: 79 LIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 138
L+ + FD GV+ + L+ G+ T D L+++G+ VTN++++S +Q +
Sbjct: 10 LLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHK 69
Query: 139 LGL-TVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAG-FQYLGGPEDG 196
LGL ++T ++I Y+ D KV + GI+ L A YL DG
Sbjct: 70 LGLFSITADKIISSGXITKEYI-------DLKV----DGGIVAYLGTANSANYL--VSDG 116
Query: 197 GKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHL 256
K + + + +V A+V+ D FN++ T+ + I N D L
Sbjct: 117 IKXLPVS-AIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPL 175
Query: 257 TDAQEWAGGGSMVGAFVGSTQREPLVVGKPST----FMMDYLANKFGIQKSQICMVGDRL 312
T G + R + GKP + F D L K I K +I VGD L
Sbjct: 176 TKTDVAIAIGGVATXIESILGRRFIRFGKPDSQXFXFAYDXLRQKXEISKREILXVGDTL 235
Query: 313 DTDILFGQNGGCKTLLVLSGK 333
TDIL G G T LVL+G
Sbjct: 236 HTDILGGNKFGLDTALVLTGN 256
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 101/255 (39%), Gaps = 34/255 (13%)
Query: 82 SVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 141
+++ + D +G + D + G E L LR+ + FVTN + +++K ++ + L
Sbjct: 6 ALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVXVRFVTNTTKETKKDLLERLKKLEF 65
Query: 142 TVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIE 201
++E+EI ++ K + ++ +D L
Sbjct: 66 EISEDEIFTSLTAARNLIEQ----KQVRPXLLLDDRAL---------------------- 99
Query: 202 LKPGFLMEHDKDVGAVVVGF-DRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQ 260
P F +D AVV+G +F+Y + + + G IA ++ D
Sbjct: 100 --PEFTGVQTQDPNAVVIGLAPEHFHYQLLNQAFRLLLD--GAPLIAIHKARYYKRKDGL 155
Query: 261 EWAGGGSMVGAFVGSTQREPLVVGKPS-TFMMDYLANKFGIQKSQICMVGDRLDTDILFG 319
G G V A +T + VVGKP TF ++ L + + +GD D+
Sbjct: 156 AL-GPGPFVTALEYATDTKAXVVGKPEKTFFLEALRDA-DCAPEEAVXIGDDCRDDVDGA 213
Query: 320 QNGGCKTLLVLSGKW 334
QN G +LV +GK+
Sbjct: 214 QNIGXLGILVKTGKY 228
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 34/255 (13%)
Query: 82 SVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 141
+++ + D G + D + G E L LR + FVTN + +S++ ++ L
Sbjct: 6 ALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERLRKLEF 65
Query: 142 TVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIE 201
++E+EI L+ K + ++ +D L
Sbjct: 66 DISEDEIFTSLTAARSLLER----KQVRPMLLVDDRAL---------------------- 99
Query: 202 LKPGFLMEHDKDVGAVVVGF-DRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQ 260
P F D AVV+G +F+Y + + + G IA ++ D
Sbjct: 100 --PDFKGIQTSDPNAVVMGLAPEHFHYQILNQAFRLLLD--GAPLIAIHKARYYKRKDGL 155
Query: 261 EWAGGGSMVGAFVGSTQREPLVVGKPS-TFMMDYLANKFGIQKSQICMVGDRLDTDILFG 319
G G V A +T + VVGKP TF ++ L G + + M+GD D+
Sbjct: 156 AL-GPGPFVTALEYATDTKATVVGKPEKTFFLEALRGT-GCEPEEAVMIGDDCRDDVGGA 213
Query: 320 QNGGCKTLLVLSGKW 334
Q+ G +LV +GK+
Sbjct: 214 QDVGMLGILVKTGKY 228
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 244 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 303
L + TN D T + A VG QRE KP+ + Y N G+Q
Sbjct: 149 LLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQREE----KPAPSIFYYCCNLLGVQPG 204
Query: 304 QICMVGDRLDTDILFGQNGGCK 325
MVGD L+TDI G N G K
Sbjct: 205 DCVMVGDTLETDIQGGLNAGLK 226
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 244 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 303
L + TN D T + A +G Q+E KP+ + + + G+Q
Sbjct: 139 LLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEE----KPAPSIFYHCCDLLGVQPG 194
Query: 304 QICMVGDRLDTDILFGQNGGCK 325
MVGD L+TDI G N G K
Sbjct: 195 DCVMVGDTLETDIQGGLNAGLK 216
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 88/239 (36%), Gaps = 48/239 (20%)
Query: 106 ETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFP 165
E + L+ ++ F TN S SR + + + LG ++E+E+ LK
Sbjct: 39 EAVARLKRSRLKVRFCTNESAASRAELVGQLQRLGFDISEQEVTAPAPAACQILKE---- 94
Query: 166 KDKKVYVVGEDGILKELELAGFQYLGGPE-----DGGKKIELKP-----GFLMEHDKDVG 215
+ + Y++ DG+ E + P D G+ + LME +K V
Sbjct: 95 RGLRPYLLIHDGVRSEFDQID---TSNPNCVVIADAGESFSYQNMNNAFQVLMELEKPV- 150
Query: 216 AVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS 275
+ +G R YY G + V A E+A G
Sbjct: 151 LISLGKGR---YYAATSGLML---------------DVGPYMKALEYACG---------- 182
Query: 276 TQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGKW 334
+ E VVGKPS G++ Q M+GD + D+ Q G + L V +GK+
Sbjct: 183 IKAE--VVGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKF 239
>pdb|3IB6|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|C Chain C, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|D Chain D, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
Length = 189
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 272 FVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTL 327
+ +++ +P + KP + D+ N I K++ MVG+ ++DI+ G +
Sbjct: 84 YASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAI 139
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 277 QREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTL 327
Q P + P+ F YL KFG+ QI VGD DI + GC +
Sbjct: 164 QSLPEIKPHPAPFY--YLCGKFGLYPKQILFVGDS-QNDIFAAHSAGCAVV 211
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 283 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGKW 334
V KPS YL +K+ + +GDR D+ F QN G +++ L +
Sbjct: 138 VRKPSPEAATYLLDKYQLNSDNTYYIGDRT-LDVEFAQNSGIQSINFLESTY 188
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 283 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGK 333
V KP + F ++ + MVGDRL +DI + G KT+ GK
Sbjct: 148 VKKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGK 198
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN---STKSRKQY 132
F FD DGV+++G K I G + L +L + +TN S ++R ++
Sbjct: 16 FAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEF 65
>pdb|3L8E|A Chain A, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
pdb|3L8E|B Chain B, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
Length = 187
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 99 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK-KFETL 139
+ IDGV + + L+ G LV VTN S +R ++ + +FETL
Sbjct: 30 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETL 71
>pdb|2GMW|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|2GMW|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|3ESQ|A Chain A, Crystal Structure Of Calcium-Bound D,D-Heptose
1.7-Bisphosphate Phosphatase From E. Coli
pdb|3ESR|A Chain A, Crystal Structure Of D,D-Heptose1.7-Bisphosphate
Phosphatase From E. Coli In Complex With Calcium And
Phosphate
pdb|3L1U|A Chain A, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1U|B Chain B, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1V|A Chain A, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate.
pdb|3L1V|B Chain B, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate
Length = 211
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 99 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK-KFETL 139
+ IDGV + + L+ G LV VTN S +R ++ + +FETL
Sbjct: 50 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETL 91
>pdb|3EPN|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPN|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPO|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
pdb|3EPO|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
Length = 612
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 193 PEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYF----NYYKVQYGTLCIRENPGCLFIAT 248
P+ G K KPG L+ + A ++ + + + + C+R+ G F A+
Sbjct: 116 PDTGRKIYRAKPGKLVTQLEYARAGIITAEMEYVAIRENLRREQDRPCVRD--GEDFGAS 173
Query: 249 NRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMV 308
D VT QE A G +++ A + + EP+ +G+ F++ AN G + + V
Sbjct: 174 IPDFVTPEFVRQEIARGRAIIPANINHGELEPMAIGR--NFLVKINAN-IG-NSAVLSTV 229
Query: 309 GDRLDTDILFGQNGGCKTLLVLS 331
D +D +++ G T++ LS
Sbjct: 230 ADEVDK-LVWATRWGADTVMDLS 251
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 292 DYLANKFGIQKSQICMVGDRLDTDI 316
DY+ + FG + ++ C+ DRLDT++
Sbjct: 300 DYVGHTFGTEGTESCIQVDRLDTEL 324
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN---STKSRKQY 132
F F DGV+++G K I G + L +L + +TN S ++R ++
Sbjct: 19 FAFAIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEF 68
>pdb|3VI6|A Chain A, Crystal Structure Of Human L30e
Length = 125
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 93 VIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRK 130
++ K K + G +TL M+R +LV + NN RK
Sbjct: 21 LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRK 58
>pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 115
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 93 VIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 142
++ K K + G +TL M+R +LV + NN RK + + L T
Sbjct: 20 LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKT 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,890,271
Number of Sequences: 62578
Number of extensions: 422732
Number of successful extensions: 926
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 44
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)