Query 019929
Match_columns 334
No_of_seqs 327 out of 1492
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 1.9E-17 6.4E-22 127.5 7.2 87 148-234 4-93 (94)
2 2ct7_A Ring finger protein 31; 99.3 1.1E-13 3.6E-18 104.5 -0.3 72 216-291 4-79 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 99.3 7.6E-14 2.6E-18 103.8 -2.0 70 213-285 2-76 (80)
4 4ap4_A E3 ubiquitin ligase RNF 99.1 4.2E-11 1.5E-15 96.9 3.5 118 147-322 5-126 (133)
5 1wd2_A Ariadne-1 protein homol 99.1 1.9E-11 6.4E-16 85.4 1.0 29 306-334 3-34 (60)
6 3hcs_A TNF receptor-associated 98.9 4.8E-09 1.6E-13 88.9 8.0 131 146-323 15-151 (170)
7 2ct2_A Tripartite motif protei 98.8 8.1E-09 2.8E-13 77.4 6.4 63 145-213 11-74 (88)
8 2djb_A Polycomb group ring fin 98.7 2E-08 7E-13 72.6 6.3 57 146-213 12-68 (72)
9 2ect_A Ring finger protein 126 98.6 2.6E-08 9E-13 73.0 4.3 57 146-211 12-68 (78)
10 2ysl_A Tripartite motif-contai 98.6 4.6E-08 1.6E-12 70.7 5.0 56 146-210 17-72 (73)
11 2ecw_A Tripartite motif-contai 98.6 9.2E-08 3.2E-12 70.9 6.5 60 146-211 16-75 (85)
12 2ep4_A Ring finger protein 24; 98.6 9.2E-08 3.1E-12 69.3 6.2 53 146-207 12-64 (74)
13 2ecv_A Tripartite motif-contai 98.6 7.9E-08 2.7E-12 71.3 6.0 60 146-211 16-75 (85)
14 3ng2_A RNF4, snurf, ring finge 98.6 3.5E-08 1.2E-12 70.9 3.8 58 147-213 8-69 (71)
15 1rmd_A RAG1; V(D)J recombinati 98.6 9.9E-08 3.4E-12 75.5 6.6 83 147-251 21-103 (116)
16 3lrq_A E3 ubiquitin-protein li 98.6 8.9E-08 3E-12 73.9 6.1 68 148-225 21-89 (100)
17 2egp_A Tripartite motif-contai 98.5 1.3E-08 4.5E-13 74.7 1.1 61 146-211 9-69 (79)
18 2ea6_A Ring finger protein 4; 98.5 6.9E-08 2.3E-12 68.8 4.8 52 146-206 12-67 (69)
19 2d8t_A Dactylidin, ring finger 98.5 6.1E-08 2.1E-12 69.8 4.4 55 146-212 12-66 (71)
20 2ecy_A TNF receptor-associated 98.5 6.1E-08 2.1E-12 68.7 4.2 54 146-210 12-65 (66)
21 2xeu_A Ring finger protein 4; 98.5 4.3E-08 1.5E-12 68.7 3.4 56 149-213 3-62 (64)
22 1jm7_A BRCA1, breast cancer ty 98.5 8.4E-08 2.9E-12 75.2 5.4 69 149-226 21-90 (112)
23 1t1h_A Gspef-atpub14, armadill 98.5 1.6E-07 5.5E-12 68.7 6.3 66 147-223 6-72 (78)
24 2kiz_A E3 ubiquitin-protein li 98.5 2.1E-07 7.2E-12 66.4 6.2 53 146-207 11-63 (69)
25 2ecm_A Ring finger and CHY zin 98.5 1.1E-07 3.9E-12 64.5 4.5 50 148-206 4-54 (55)
26 2ysj_A Tripartite motif-contai 98.5 2.1E-07 7E-12 65.2 6.0 46 146-198 17-62 (63)
27 3ztg_A E3 ubiquitin-protein li 98.5 1.3E-07 4.4E-12 71.6 4.6 50 146-205 10-60 (92)
28 3hct_A TNF receptor-associated 98.5 3E-07 1E-11 73.0 6.9 83 146-251 15-97 (118)
29 2y43_A E3 ubiquitin-protein li 98.4 1.2E-07 4.1E-12 72.8 4.2 67 148-225 21-88 (99)
30 1e4u_A Transcriptional repress 98.4 9E-08 3.1E-12 70.4 3.3 57 146-210 8-65 (78)
31 1g25_A CDK-activating kinase a 98.4 9.2E-08 3.2E-12 67.6 3.2 58 149-214 3-62 (65)
32 4ayc_A E3 ubiquitin-protein li 98.4 5.9E-07 2E-11 73.3 8.2 47 149-207 53-99 (138)
33 2yur_A Retinoblastoma-binding 98.4 2.6E-07 8.9E-12 67.1 5.3 51 146-206 12-63 (74)
34 2yu4_A E3 SUMO-protein ligase 98.4 4.2E-07 1.4E-11 69.3 6.3 61 147-210 5-66 (94)
35 1x4j_A Ring finger protein 38; 98.4 2E-07 6.8E-12 67.8 4.1 52 147-207 21-72 (75)
36 2csy_A Zinc finger protein 183 98.4 5.1E-07 1.8E-11 66.6 6.3 49 146-206 12-60 (81)
37 3knv_A TNF receptor-associated 98.4 4.8E-08 1.7E-12 80.2 0.5 85 146-250 28-118 (141)
38 1iym_A EL5; ring-H2 finger, ub 98.4 1.7E-07 5.7E-12 63.8 2.7 50 148-206 4-54 (55)
39 3l11_A E3 ubiquitin-protein li 98.4 1.5E-07 5E-12 74.4 2.7 54 143-207 9-62 (115)
40 2l0b_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 68.9 4.5 52 147-207 38-89 (91)
41 2ckl_A Polycomb group ring fin 98.3 3.3E-07 1.1E-11 71.5 3.6 51 147-208 13-63 (108)
42 2ecj_A Tripartite motif-contai 98.3 5.3E-07 1.8E-11 61.8 3.7 46 146-198 12-57 (58)
43 3fl2_A E3 ubiquitin-protein li 98.2 4.4E-07 1.5E-11 72.6 3.2 49 148-207 51-99 (124)
44 2kr4_A Ubiquitin conjugation f 98.2 3E-06 1E-10 63.2 6.6 52 147-210 12-63 (85)
45 1chc_A Equine herpes virus-1 r 98.2 1.1E-06 3.8E-11 62.3 3.9 48 148-206 4-51 (68)
46 3htk_C E3 SUMO-protein ligase 98.2 9.8E-07 3.3E-11 78.9 4.2 73 147-226 179-252 (267)
47 2ecn_A Ring finger protein 141 98.2 2.5E-07 8.5E-12 66.2 0.2 49 147-208 13-61 (70)
48 1z6u_A NP95-like ring finger p 98.2 5.4E-06 1.8E-10 68.6 8.2 49 149-208 78-126 (150)
49 1v87_A Deltex protein 2; ring- 98.1 2.7E-06 9.4E-11 66.8 5.1 55 149-207 25-94 (114)
50 1jm7_B BARD1, BRCA1-associated 98.1 3.5E-07 1.2E-11 72.5 -0.1 65 148-225 21-86 (117)
51 2ecl_A Ring-box protein 2; RNF 98.1 3.1E-06 1.1E-10 62.5 5.0 54 147-209 13-78 (81)
52 1wgm_A Ubiquitin conjugation f 98.1 4.9E-06 1.7E-10 63.8 6.2 52 146-209 19-71 (98)
53 2kre_A Ubiquitin conjugation f 98.0 3.4E-06 1.1E-10 65.0 4.4 52 146-209 26-77 (100)
54 2ckl_B Ubiquitin ligase protei 98.0 3.7E-06 1.3E-10 70.6 4.3 51 147-207 52-102 (165)
55 2c2l_A CHIP, carboxy terminus 98.0 1.3E-05 4.4E-10 72.5 7.8 52 147-209 206-257 (281)
56 2f42_A STIP1 homology and U-bo 97.9 2.3E-05 8E-10 66.5 7.9 52 147-209 104-155 (179)
57 1bor_A Transcription factor PM 97.9 2E-06 7E-11 58.8 0.9 46 147-207 4-49 (56)
58 2d8s_A Cellular modulator of i 97.7 4.6E-05 1.6E-09 56.0 5.7 55 146-208 12-71 (80)
59 4ap4_A E3 ubiquitin ligase RNF 97.7 2.2E-05 7.6E-10 62.8 4.3 59 146-213 69-131 (133)
60 4ic3_A E3 ubiquitin-protein li 97.7 1.7E-05 5.7E-10 57.4 2.2 43 149-207 24-67 (74)
61 2ea5_A Cell growth regulator w 97.4 0.0001 3.6E-09 52.3 3.9 46 146-207 12-58 (68)
62 2ecg_A Baculoviral IAP repeat- 97.4 4E-05 1.4E-09 55.5 1.8 43 149-207 25-68 (75)
63 3dpl_R Ring-box protein 1; ubi 97.4 9.8E-05 3.3E-09 57.3 3.6 51 148-207 36-101 (106)
64 2y1n_A E3 ubiquitin-protein li 97.3 0.00018 6.2E-09 68.1 4.3 50 149-209 332-381 (389)
65 2vje_A E3 ubiquitin-protein li 97.2 0.00015 5.2E-09 50.7 2.6 49 147-206 6-56 (64)
66 2yho_A E3 ubiquitin-protein li 97.2 0.0001 3.4E-09 54.0 1.6 43 149-207 18-61 (79)
67 2vje_B MDM4 protein; proto-onc 97.2 0.00018 6.1E-09 50.2 2.8 49 148-206 6-55 (63)
68 2ct0_A Non-SMC element 1 homol 97.0 0.00062 2.1E-08 49.1 3.8 56 143-207 9-64 (74)
69 4a0k_B E3 ubiquitin-protein li 96.8 0.00017 5.9E-09 56.8 0.0 50 149-207 48-112 (117)
70 3t6p_A Baculoviral IAP repeat- 96.4 0.00083 2.8E-08 62.9 1.5 44 148-207 294-338 (345)
71 2bay_A PRE-mRNA splicing facto 96.1 0.0067 2.3E-07 41.8 4.3 53 149-212 3-55 (61)
72 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.016 5.6E-07 53.6 6.5 61 147-209 306-375 (381)
73 3vk6_A E3 ubiquitin-protein li 95.4 0.014 4.9E-07 44.0 4.2 48 150-207 2-49 (101)
74 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.012 4.2E-07 44.5 2.5 34 149-182 3-36 (101)
75 1wd2_A Ariadne-1 protein homol 94.8 0.02 6.7E-07 39.4 3.0 38 235-276 5-44 (60)
76 2cs3_A Protein C14ORF4, MY039 93.9 0.13 4.6E-06 36.9 5.8 50 147-198 13-63 (93)
77 1vyx_A ORF K3, K3RING; zinc-bi 92.2 0.13 4.6E-06 35.0 3.7 49 148-206 5-58 (60)
78 3nw0_A Non-structural maintena 89.6 0.21 7.1E-06 44.0 3.3 51 149-208 180-230 (238)
79 1zbd_B Rabphilin-3A; G protein 89.5 0.61 2.1E-05 37.2 5.7 33 148-180 54-88 (134)
80 3lrq_A E3 ubiquitin-protein li 86.7 0.34 1.2E-05 36.3 2.4 29 237-274 23-51 (100)
81 2k4x_A 30S ribosomal protein S 86.6 0.23 7.8E-06 33.3 1.2 27 308-334 17-44 (55)
82 3j20_Y 30S ribosomal protein S 86.5 0.32 1.1E-05 31.9 1.9 27 307-334 17-45 (50)
83 2d8v_A Zinc finger FYVE domain 83.0 0.74 2.5E-05 31.8 2.5 34 147-184 6-40 (67)
84 3ztg_A E3 ubiquitin-protein li 81.7 0.76 2.6E-05 33.5 2.4 30 236-274 13-42 (92)
85 2yur_A Retinoblastoma-binding 81.5 0.77 2.6E-05 32.1 2.3 50 236-321 15-64 (74)
86 1g25_A CDK-activating kinase a 80.5 0.7 2.4E-05 31.3 1.7 14 309-322 43-56 (65)
87 1pft_A TFIIB, PFTFIIBN; N-term 80.0 1.2 4E-05 28.9 2.6 27 308-334 4-32 (50)
88 2ct7_A Ring finger protein 31; 78.8 1.1 3.9E-05 32.6 2.5 28 307-334 23-51 (86)
89 2zet_C Melanophilin; complex, 78.4 5.6 0.00019 32.3 6.8 32 148-179 67-100 (153)
90 1x4j_A Ring finger protein 38; 77.0 1.2 4.2E-05 31.0 2.2 15 310-324 61-75 (75)
91 1vq8_Z 50S ribosomal protein L 76.8 1.1 3.8E-05 32.6 1.9 27 308-334 26-53 (83)
92 2ecv_A Tripartite motif-contai 75.7 2 6.9E-05 30.3 3.1 15 307-321 57-71 (85)
93 3vk6_A E3 ubiquitin-protein li 73.9 1.3 4.4E-05 33.3 1.6 18 306-323 34-51 (101)
94 1weo_A Cellulose synthase, cat 72.1 7.4 0.00025 28.5 5.2 51 148-206 15-69 (93)
95 3hcs_A TNF receptor-associated 71.7 5.9 0.0002 32.3 5.4 68 151-251 55-123 (170)
96 2ckl_B Ubiquitin ligase protei 70.6 1.7 5.9E-05 35.4 1.8 29 237-274 55-83 (165)
97 3qt1_I DNA-directed RNA polyme 70.6 1.8 6.1E-05 34.4 1.8 29 306-334 21-54 (133)
98 2jrp_A Putative cytoplasmic pr 68.4 1.7 5.9E-05 31.3 1.2 24 237-266 3-26 (81)
99 1twf_L ABC10-alpha, DNA-direct 67.8 1.9 6.6E-05 30.2 1.3 26 308-334 27-53 (70)
100 1joc_A EEA1, early endosomal a 66.0 23 0.00078 27.5 7.4 35 148-182 68-103 (125)
101 1weo_A Cellulose synthase, cat 65.6 4.5 0.00015 29.6 2.9 42 257-326 34-75 (93)
102 1v87_A Deltex protein 2; ring- 65.6 3.1 0.0001 31.5 2.2 40 261-324 58-97 (114)
103 2jmo_A Parkin; IBR, E3 ligase, 65.5 2.3 7.9E-05 30.5 1.4 28 307-334 23-58 (80)
104 3qt1_I DNA-directed RNA polyme 64.9 4 0.00014 32.4 2.8 35 232-268 20-56 (133)
105 2jr6_A UPF0434 protein NMA0874 64.0 3.6 0.00012 28.6 2.1 26 308-333 7-33 (68)
106 3fl2_A E3 ubiquitin-protein li 63.8 2.8 9.7E-05 32.3 1.7 28 237-274 53-80 (124)
107 4ayc_A E3 ubiquitin-protein li 59.4 3.5 0.00012 32.5 1.5 12 263-274 70-81 (138)
108 3hct_A TNF receptor-associated 57.3 10 0.00035 28.8 3.9 50 151-215 55-104 (118)
109 3m7n_A Putative uncharacterize 55.0 5.7 0.00019 33.0 2.2 23 310-334 141-164 (179)
110 3h0g_L DNA-directed RNA polyme 53.7 5.3 0.00018 27.3 1.4 27 307-334 19-46 (63)
111 2lbm_A Transcriptional regulat 53.3 22 0.00075 28.4 5.3 33 148-183 62-94 (142)
112 1dl6_A Transcription factor II 52.7 9.3 0.00032 25.5 2.6 26 309-334 11-38 (58)
113 3h0g_I DNA-directed RNA polyme 52.7 6.5 0.00022 30.1 2.0 31 236-268 4-36 (113)
114 1twf_I B12.6, DNA-directed RNA 51.5 5.4 0.00018 31.0 1.4 32 235-268 3-36 (122)
115 1z6u_A NP95-like ring finger p 49.6 6.7 0.00023 31.5 1.7 12 263-274 95-106 (150)
116 1z2q_A LM5-1; membrane protein 49.3 21 0.00073 25.5 4.3 36 147-182 19-55 (84)
117 3a1b_A DNA (cytosine-5)-methyl 48.2 10 0.00035 30.9 2.6 34 149-185 79-114 (159)
118 2ko5_A Ring finger protein Z; 47.8 8.2 0.00028 28.5 1.7 49 147-208 26-74 (99)
119 3nw0_A Non-structural maintena 47.7 22 0.00075 30.9 4.9 15 306-320 214-228 (238)
120 3t7l_A Zinc finger FYVE domain 47.6 15 0.00051 26.8 3.2 36 147-182 18-54 (90)
121 3u5c_f 40S ribosomal protein S 45.5 6.1 0.00021 32.0 0.9 33 237-271 119-151 (152)
122 2jne_A Hypothetical protein YF 44.7 12 0.00043 27.7 2.3 24 308-333 31-55 (101)
123 3lqh_A Histone-lysine N-methyl 44.6 5.3 0.00018 33.4 0.4 75 150-227 3-85 (183)
124 1odh_A MGCM1; transcription fa 44.6 7.3 0.00025 31.7 1.1 20 309-334 110-131 (174)
125 1k81_A EIF-2-beta, probable tr 44.3 9.6 0.00033 22.8 1.4 24 311-334 2-29 (36)
126 2c2l_A CHIP, carboxy terminus 44.0 15 0.00053 31.9 3.4 30 235-274 207-236 (281)
127 1z60_A TFIIH basal transcripti 43.6 11 0.00037 25.4 1.7 30 150-179 16-45 (59)
128 1vq8_Z 50S ribosomal protein L 43.4 7 0.00024 28.3 0.8 32 235-270 26-57 (83)
129 1fre_A Nuclear factor XNF7; zi 42.8 15 0.00052 22.1 2.3 25 257-281 13-38 (42)
130 1wfk_A Zinc finger, FYVE domai 42.8 15 0.00053 26.6 2.6 34 148-181 8-42 (88)
131 3mjh_B Early endosome antigen 40.8 7.1 0.00024 23.2 0.4 16 147-162 3-18 (34)
132 2o35_A Hypothetical protein DU 40.6 12 0.00041 27.9 1.7 17 173-189 42-58 (105)
133 3fyb_A Protein of unknown func 40.3 11 0.00039 27.9 1.5 17 173-189 41-57 (104)
134 1vfy_A Phosphatidylinositol-3- 39.7 15 0.00051 25.5 2.1 32 150-181 12-44 (73)
135 2k16_A Transcription initiatio 39.2 22 0.00076 24.6 3.0 34 147-180 16-49 (75)
136 2hf1_A Tetraacyldisaccharide-1 39.1 15 0.00052 25.4 2.0 25 309-333 8-33 (68)
137 2js4_A UPF0434 protein BB2007; 38.9 16 0.00056 25.4 2.1 26 308-333 7-33 (70)
138 2yw8_A RUN and FYVE domain-con 38.8 16 0.00055 26.0 2.2 34 148-181 18-52 (82)
139 3ul0_C Nuclear CAP-binding pro 38.0 24 0.00084 18.8 2.2 13 22-34 1-13 (26)
140 1wfe_A Riken cDNA 2310008M20 p 37.8 21 0.0007 25.9 2.6 32 237-275 26-57 (86)
141 3htk_C E3 SUMO-protein ligase 37.4 11 0.00039 33.3 1.3 13 262-274 198-210 (267)
142 4ayb_P DNA-directed RNA polyme 37.2 17 0.00059 23.1 1.8 29 238-268 5-33 (48)
143 2pk7_A Uncharacterized protein 37.1 17 0.0006 25.1 2.0 25 309-333 8-33 (69)
144 2zkr_2 60S ribosomal protein L 36.8 12 0.00042 27.7 1.2 22 310-334 17-39 (97)
145 2pv0_B DNA (cytosine-5)-methyl 36.7 19 0.00063 33.7 2.7 32 149-183 93-126 (386)
146 3na7_A HP0958; flagellar bioge 36.2 68 0.0023 27.9 6.3 20 209-228 168-187 (256)
147 1vk6_A NADH pyrophosphatase; 1 35.5 35 0.0012 30.0 4.4 27 308-334 106-133 (269)
148 1x4v_A Hypothetical protein LO 35.3 15 0.00053 25.0 1.5 32 237-275 13-44 (63)
149 2apo_B Ribosome biogenesis pro 34.9 14 0.00048 24.9 1.2 15 307-321 4-18 (60)
150 1wep_A PHF8; structural genomi 34.7 45 0.0015 23.4 4.0 60 147-211 10-70 (79)
151 2yvr_A Transcription intermedi 33.1 8.3 0.00029 24.4 -0.2 28 256-283 16-43 (50)
152 2hu9_A MERP, mercuric transpor 32.6 26 0.00088 27.5 2.6 45 194-250 2-49 (130)
153 1gh9_A 8.3 kDa protein (gene M 32.3 21 0.00073 24.9 1.8 14 306-320 18-31 (71)
154 1x4u_A Zinc finger, FYVE domai 32.1 25 0.00086 25.1 2.3 33 236-274 14-46 (84)
155 3j21_g 50S ribosomal protein L 31.8 15 0.00053 23.9 1.0 25 306-334 11-36 (51)
156 2ffw_A Midline-1; B-BOX, ring 31.4 45 0.0015 23.4 3.5 37 148-184 29-66 (78)
157 3mpx_A FYVE, rhogef and PH dom 30.0 13 0.00045 34.9 0.5 38 147-184 373-411 (434)
158 2y1n_A E3 ubiquitin-protein li 30.0 21 0.00071 33.5 1.9 13 309-321 367-379 (389)
159 2aus_D NOP10, ribosome biogene 29.9 17 0.00059 24.5 1.0 14 308-321 4-17 (60)
160 2jny_A Uncharacterized BCR; st 29.8 27 0.00092 24.0 2.0 26 308-333 9-35 (67)
161 2xzm_9 RPS31E; ribosome, trans 29.5 25 0.00085 29.5 2.1 26 308-334 112-139 (189)
162 1y02_A CARP2, FYVE-ring finger 28.9 25 0.00085 27.2 1.9 36 148-183 18-54 (120)
163 1joc_A EEA1, early endosomal a 28.7 40 0.0014 26.0 3.1 34 236-275 69-102 (125)
164 2kdx_A HYPA, hydrogenase/ureas 28.6 81 0.0028 23.9 4.9 26 236-267 73-99 (119)
165 2kpi_A Uncharacterized protein 27.3 33 0.0011 22.6 2.0 23 309-333 10-35 (56)
166 1dvp_A HRS, hepatocyte growth 27.1 23 0.00078 30.2 1.5 34 149-182 161-195 (220)
167 2gmg_A Hypothetical protein PF 26.3 26 0.0009 26.4 1.5 25 238-267 69-93 (105)
168 3ql9_A Transcriptional regulat 26.2 68 0.0023 25.0 4.0 32 149-183 57-88 (129)
169 2did_A Tripartite motif protei 25.8 17 0.00058 23.2 0.3 27 256-282 17-44 (53)
170 1wii_A Hypothetical UPF0222 pr 25.7 24 0.00083 25.5 1.2 25 309-333 23-54 (85)
171 3v43_A Histone acetyltransfera 25.7 77 0.0026 23.7 4.2 49 148-198 4-60 (112)
172 3zyq_A Hepatocyte growth facto 25.6 26 0.00087 30.1 1.6 34 149-182 164-198 (226)
173 1wem_A Death associated transc 25.6 1.1E+02 0.0036 21.1 4.6 33 147-180 14-46 (76)
174 1we9_A PHD finger family prote 24.8 36 0.0012 22.7 1.9 34 147-180 4-38 (64)
175 2csv_A Tripartite motif protei 24.2 16 0.00053 25.2 -0.1 31 256-286 27-57 (72)
176 3ddt_A E3 ubiquitin-protein li 23.5 15 0.00053 22.9 -0.2 25 257-281 17-42 (48)
177 3t6p_A Baculoviral IAP repeat- 23.4 29 0.001 31.9 1.6 12 310-321 327-338 (345)
178 3v2d_5 50S ribosomal protein L 23.4 52 0.0018 22.0 2.4 27 231-266 25-51 (60)
179 2be7_D Aspartate carbamoyltran 23.4 31 0.0011 27.8 1.6 32 236-268 105-144 (153)
180 2dja_A Midline-2; tripartite m 22.6 17 0.00058 25.7 -0.2 27 257-283 29-56 (84)
181 1qxf_A GR2, 30S ribosomal prot 22.5 48 0.0017 22.7 2.1 33 237-272 8-40 (66)
182 2zjr_Z 50S ribosomal protein L 22.4 63 0.0021 21.6 2.7 28 231-267 25-52 (60)
183 1x6a_A LIMK-2, LIM domain kina 22.4 80 0.0027 21.6 3.5 39 147-185 39-77 (81)
184 2yrg_A Tripartite motif-contai 22.3 21 0.00073 23.5 0.3 27 256-282 23-50 (59)
185 2d8u_A Ubiquitin ligase TRIM63 21.9 22 0.00075 23.6 0.3 28 256-283 18-46 (64)
186 1ee8_A MUTM (FPG) protein; bet 21.1 35 0.0012 30.1 1.6 23 310-332 236-261 (266)
187 2yww_A Aspartate carbamoyltran 21.0 37 0.0013 27.2 1.5 31 236-268 105-143 (149)
188 2xzf_A Formamidopyrimidine-DNA 20.8 31 0.0011 30.5 1.2 24 310-333 243-269 (271)
189 1dvp_A HRS, hepatocyte growth 20.6 38 0.0013 28.7 1.7 32 238-275 163-194 (220)
190 3u6p_A Formamidopyrimidine-DNA 20.6 31 0.0011 30.5 1.1 24 310-333 246-272 (273)
191 3a43_A HYPD, hydrogenase nicke 20.5 83 0.0028 24.7 3.5 14 236-251 70-83 (139)
192 2vpb_A Hpygo1, pygopus homolog 20.3 79 0.0027 21.3 2.9 34 147-180 6-41 (65)
193 1dsq_A Nucleic acid binding pr 20.1 52 0.0018 17.7 1.6 18 267-284 3-20 (26)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.70 E-value=1.9e-17 Score=127.49 Aligned_cols=87 Identities=25% Similarity=0.545 Sum_probs=77.7
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCe-eeeecCCCcCCCC--CchhhhhccCChHHHHHHHH
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENI-TAIRCPVVDCRGL--LEPEYCRDILPQDVFDRWGA 224 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~-~~i~CP~~~C~~~--l~~~~i~~ll~~~~~~~y~~ 224 (334)
+.++|+||+++++..+++.+.+|||.||++||.+|+..+|.+|. .++.||..+|... ++++.++.+++++++++|++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~ 83 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKK 83 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHHH
Confidence 46899999999987777777789999999999999999998774 6899998889999 99999999999999999999
Q ss_pred HHHHhhcCCC
Q 019929 225 ALCEAVIPGA 234 (334)
Q Consensus 225 ~~~~~~~~~~ 234 (334)
++.+.++..+
T Consensus 84 ~~~~~~v~~~ 93 (94)
T 1wim_A 84 LQFERSGPSS 93 (94)
T ss_dssp HHHHSSCSSC
T ss_pred HHHHhhhccC
Confidence 9888776543
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.33 E-value=1.1e-13 Score=104.54 Aligned_cols=72 Identities=29% Similarity=0.675 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHhhcCCCC-cccCCCCCCCceEEcCCccccccccCCccccccccccCccC---CCCCCchhHHHHhhh
Q 019929 216 QDVFDRWGAALCEAVIPGAQ-KFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVPW---HSGINCVEFQKLNKD 291 (334)
Q Consensus 216 ~~~~~~y~~~~~~~~~~~~~-~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~---H~~~tC~~~~~~~~~ 291 (334)
++++++|++++.+.++.... .+||| +|+.+++.+.. ...+.|+.|++.||+.|+.+| |.|.+|.++++|.++
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~--~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE--QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS--CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC--CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 35678899988888886554 56999 99998887643 455899999999999999999 999999999999754
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.31 E-value=7.6e-14 Score=103.75 Aligned_cols=70 Identities=20% Similarity=0.512 Sum_probs=60.8
Q ss_pred cCChHHHHHHHHHHHHhhcCCCCcccCCCCCCCceEEcCCccccccccCC-----ccccccccccCccCCCCCCchhH
Q 019929 213 ILPQDVFDRWGAALCEAVIPGAQKFYCPFKDCSAMLIDDGEEVIQESECP-----NCRRLFCAQCQVPWHSGINCVEF 285 (334)
Q Consensus 213 ll~~~~~~~y~~~~~~~~~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~C~-----~C~~~fC~~C~~~~H~~~tC~~~ 285 (334)
+|+++++++|++++.+.++.....+|||+|+|+.++..+. ....+.|+ .|++.||+.|+.+||. .+|...
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 5778889999999999888877788999999999988764 34559998 8999999999999999 999763
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=4.2e-11 Score=96.95 Aligned_cols=118 Identities=23% Similarity=0.556 Sum_probs=78.5
Q ss_pred ccccccccccccccCC----ceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccCChHHHHHH
Q 019929 147 YGPFVCEICAEQKTVH----KSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDILPQDVFDRW 222 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll~~~~~~~y 222 (334)
.+.++|+||++.+... .....++|||.||..|+..|+... ..|| .|...+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCT--TTCCBCTTTCEEECB--------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-------CCCC--CCCCcCccccccccc--------
Confidence 3468999999987532 233456999999999999998642 3899 699988877665431
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCceEEcCCccccccccCCccccccccccCccCCCCCCchhHHHHhhhhhhHHHHHHHH
Q 019929 223 GAALCEAVIPGAQKFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVPWHSGINCVEFQKLNKDEREREDILLMK 302 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~tC~~~~~~~~~~~~~~d~~~~~ 302 (334)
...+...|| -|...+....... .......|++.||..|...|
T Consensus 68 ---------i~~~~~~C~--iC~~~~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~-------------------------- 109 (133)
T 4ap4_A 68 ---------IGSGTVSCP--ICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDS-------------------------- 109 (133)
T ss_dssp ---------CSSSSCBCT--TTCCBHHHHHHTT-CCEEEETTSBEEEHHHHHHH--------------------------
T ss_pred ---------cCCCCCCCC--CCCCccccccccC-cceEeCCCCChhhHHHHHHH--------------------------
Confidence 123445787 6765443211001 11233479999999995432
Q ss_pred HHHhCCccccCCCCceeeec
Q 019929 303 VAQKEKWKRCPNCRYYVEKK 322 (334)
Q Consensus 303 ~~~~~~~k~CP~C~~~IeK~ 322 (334)
+.. .+.||.|+..|+++
T Consensus 110 -~~~--~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 110 -LKN--ANTCPTCRKKINHK 126 (133)
T ss_dssp -HHH--CSBCTTTCCBCCGG
T ss_pred -HHc--CCCCCCCCCcCChh
Confidence 111 26999999999875
No 5
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=1.9e-11 Score=85.37 Aligned_cols=29 Identities=38% Similarity=0.788 Sum_probs=26.9
Q ss_pred hCCccccCCCCceeeeccCCCceEee---cCC
Q 019929 306 KEKWKRCPNCRYYVEKKDGCMYMKCR---SVF 334 (334)
Q Consensus 306 ~~~~k~CP~C~~~IeK~~GCnhMtC~---Cg~ 334 (334)
..++|+||+|+++|||++|||||||+ ||+
T Consensus 3 ~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~ 34 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDGGCNHMVCRNQNCKA 34 (60)
T ss_dssp CCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGS
T ss_pred cccceECcCCCCeeEeCCCCCcEEECCCCcCC
Confidence 56899999999999999999999997 985
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.86 E-value=4.8e-09 Score=88.89 Aligned_cols=131 Identities=21% Similarity=0.476 Sum_probs=80.6
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccCChHHHHHHHHH
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDILPQDVFDRWGAA 225 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll~~~~~~~y~~~ 225 (334)
..+.+.|+||++.+. +++. ++|||.||..|+..|+... ...|| .|...+....+.. ...+++ .
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~~---~~~~~~---~ 77 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQLFP---DNFAKR---E 77 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGCEE---CHHHHH---H
T ss_pred CCCCCCCCCCChhhc--CcEE-CCCCCHHHHHHHHHHHHhC------CCCCC--CCccCcchhhhhh---hHHHHH---H
Confidence 456799999999876 4555 5999999999999999753 23899 6888887754332 122111 1
Q ss_pred HHHhhcCCCCcccCCCCCCCceEEcCCcc------ccccccCCccccccccccCccCCCCCCchhHHHHhhhhhhHHHHH
Q 019929 226 LCEAVIPGAQKFYCPFKDCSAMLIDDGEE------VIQESECPNCRRLFCAQCQVPWHSGINCVEFQKLNKDEREREDIL 299 (334)
Q Consensus 226 ~~~~~~~~~~~~~CP~p~C~~~~~~~~~~------~~~~~~C~~C~~~fC~~C~~~~H~~~tC~~~~~~~~~~~~~~d~~ 299 (334)
+ ..-.++||+.+|+..+...... ....+.|+.|+..+ ......+|....|
T Consensus 78 i------~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C----------------- 133 (170)
T 3hcs_A 78 I------LSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDC----------------- 133 (170)
T ss_dssp H------HTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTC-----------------
T ss_pred H------hhcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhC-----------------
Confidence 1 1234699999999887765321 11234555555444 2222222322222
Q ss_pred HHHHHHhCCccccCCCCceeeecc
Q 019929 300 LMKVAQKEKWKRCPNCRYYVEKKD 323 (334)
Q Consensus 300 ~~~~~~~~~~k~CP~C~~~IeK~~ 323 (334)
......||.|+..+....
T Consensus 134 ------~~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 134 ------PRRQVSCDNCAASMAFED 151 (170)
T ss_dssp ------TTCEEECTTTCCEEEGGG
T ss_pred ------CCCCeECCCCCCccCHHH
Confidence 234568999998877643
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=8.1e-09 Score=77.44 Aligned_cols=63 Identities=25% Similarity=0.569 Sum_probs=47.8
Q ss_pred CCccccccccccccccCCce-eEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhcc
Q 019929 145 IVYGPFVCEICAEQKTVHKS-FHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDI 213 (334)
Q Consensus 145 ~~~~~~~C~IC~e~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~l 213 (334)
...+.++|+||++.+...+. ...++|||.||..|+..|+... ...+.|| .|...+....+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCT--TTCCCBCCSSTTTS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCC--CCCCcccchhHHHH
Confidence 34567999999999875442 4456999999999999999764 1256899 59988887665544
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=2e-08 Score=72.56 Aligned_cols=57 Identities=23% Similarity=0.535 Sum_probs=45.2
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhcc
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDI 213 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~l 213 (334)
....+.|+||++.+. +.+.+.+|||.||..|+..|+.. ...|| .|...+....+...
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY-------SNRCP--KCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH-------CSSCT--TTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc-------CCcCC--CcCcccCccccccc
Confidence 456899999999876 45555699999999999999965 35899 69998887665543
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=2.6e-08 Score=73.02 Aligned_cols=57 Identities=25% Similarity=0.566 Sum_probs=45.5
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCR 211 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 211 (334)
.....+|+||++.+.....+..++|+|.||..|+..|+... ..|| -|...+....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-------DSCP--VCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-------CSCT--TTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-------CcCc--CcCCccCCcccC
Confidence 45678999999998766666667999999999999998642 3799 699888776544
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=4.6e-08 Score=70.65 Aligned_cols=56 Identities=20% Similarity=0.586 Sum_probs=43.1
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYC 210 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 210 (334)
....+.|+||++.+. +.+. ++|||.||..|+..|+.. ......|| .|...+..+.+
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~-~~CgH~fC~~Ci~~~~~~----~~~~~~CP--~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVT-IDCGHNFCLKCITQIGET----SCGFFKCP--LCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEE-CTTCCEEEHHHHHHHCSS----SCSCCCCS--SSCCCCCCCCC
T ss_pred CccCCEeccCCcccC--CeEE-cCCCChhhHHHHHHHHHc----CCCCCCCC--CCCCcCCcccC
Confidence 456799999999876 4454 499999999999999862 12356899 69988876554
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.58 E-value=9.2e-08 Score=70.90 Aligned_cols=60 Identities=20% Similarity=0.491 Sum_probs=45.6
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCR 211 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 211 (334)
..+.+.|+||++.+. +.+ .++|||.||..|+..|+......+ ....|| .|...+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP--~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLK--EPV-SADCNHSFCRACITLNYESNRNTD-GKGNCP--VCRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCS--SCE-ECTTSCCBCHHHHHHHHHHSBCTT-SCBCCT--TTCCCCCTTCCE
T ss_pred CccCCCCcCCChhhC--cce-eCCCCCHHHHHHHHHHHHhccCCC-CCCCCC--CCCCcCCHHhCC
Confidence 456799999999876 334 458999999999999998754222 356899 699888876543
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=9.2e-08 Score=69.32 Aligned_cols=53 Identities=23% Similarity=0.553 Sum_probs=42.3
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
......|+||++.+.....+..++|+|.||..|+..|+... ..|| -|...+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-------~~CP--~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-------KVCP--LCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-------SBCT--TTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-------CcCC--CcCccccc
Confidence 35578999999998766666667999999999999999752 2799 58877653
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=7.9e-08 Score=71.26 Aligned_cols=60 Identities=28% Similarity=0.644 Sum_probs=46.3
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCR 211 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 211 (334)
....+.|+||++.+. +++. ++|||.||..|+..|+..+...+ ..+.|| .|...+....+.
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP--~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLS-LDCGHSFCQACLTANHKKSMLDK-GESSCP--VCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBC-CSSSCCBCTTHHHHHHHHHHHTT-SCCCCT--TTCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccC--Ccee-CCCCCHHHHHHHHHHHHHhhcCC-CCCcCC--CCCCccCHHhcC
Confidence 456799999999876 3343 59999999999999998865443 257999 599888876543
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.57 E-value=3.5e-08 Score=70.86 Aligned_cols=58 Identities=22% Similarity=0.615 Sum_probs=45.3
Q ss_pred ccccccccccccccCC----ceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhcc
Q 019929 147 YGPFVCEICAEQKTVH----KSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDI 213 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~l 213 (334)
.+.++|+||++.+... .....++|||.||..|+..|+... ..|| .|...+....+..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCT--TTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCC--CCCCccChhheeec
Confidence 4578999999987532 334567999999999999999753 3899 69999887776554
No 15
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.56 E-value=9.9e-08 Score=75.51 Aligned_cols=83 Identities=20% Similarity=0.530 Sum_probs=58.2
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccCChHHHHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDILPQDVFDRWGAAL 226 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll~~~~~~~y~~~~ 226 (334)
.+.+.|+||++.+. +++. ++|||.||..|+..|+... ...|| .|...+....+... ...+.+ .+
T Consensus 21 ~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~~~-~~~l~~----~i 84 (116)
T 1rmd_A 21 VKSISCQICEHILA--DPVE-TSCKHLFCRICILRCLKVM------GSYCP--SCRYPCFPTDLESP-VKSFLN----IL 84 (116)
T ss_dssp HHHTBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGGCBCC-CHHHHH----HH
T ss_pred cCCCCCCCCCcHhc--CcEE-cCCCCcccHHHHHHHHhHC------cCcCC--CCCCCCCHhhcccc-HHHHHH----HH
Confidence 35789999999875 4555 5999999999999999763 34799 69999888765533 122211 11
Q ss_pred HHhhcCCCCcccCCCCCCCceEEcC
Q 019929 227 CEAVIPGAQKFYCPFKDCSAMLIDD 251 (334)
Q Consensus 227 ~~~~~~~~~~~~CP~p~C~~~~~~~ 251 (334)
..-.++||+.+|+..+...
T Consensus 85 ------~~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 85 ------NSLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp ------HHCEEECCSTTCCCEEEHH
T ss_pred ------HHhcCCCCCCCCcchhhHh
Confidence 1223589998998876543
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.56 E-value=8.9e-08 Score=73.86 Aligned_cols=68 Identities=22% Similarity=0.509 Sum_probs=50.6
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccC-ChHHHHHHHHH
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDIL-PQDVFDRWGAA 225 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll-~~~~~~~y~~~ 225 (334)
+.+.|+||++.+. +++.+++|||.||..|+..|+... ...|| .|...+....+.... ..++.+.+.++
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ------RAQCP--HCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC------cCCCC--CCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4688999999876 556547999999999999999863 25899 699999887765543 34455554443
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.55 E-value=1.3e-08 Score=74.71 Aligned_cols=61 Identities=23% Similarity=0.420 Sum_probs=45.8
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCR 211 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 211 (334)
..+.++|+||++.+. +++. ++|||.||..|+..|+............|| .|...+....+.
T Consensus 9 ~~~~~~C~IC~~~~~--~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLT--EPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCP--VCGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECS--SCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCS--SSCCCCCSSGGG
T ss_pred cccCCCCcCCCcccC--CeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCC--CCCCcCCHhhCC
Confidence 356799999999876 3343 599999999999999876443333467999 699888765543
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=6.9e-08 Score=68.75 Aligned_cols=52 Identities=25% Similarity=0.681 Sum_probs=40.4
Q ss_pred CccccccccccccccCC----ceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 146 VYGPFVCEICAEQKTVH----KSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....+.|+||++.+... ..+.+++|||.||..|+..|+.. ...|| .|...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCT--TTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCC--CCCCccC
Confidence 45678999999987532 33456799999999999999975 24799 5887765
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=6.1e-08 Score=69.81 Aligned_cols=55 Identities=20% Similarity=0.443 Sum_probs=43.1
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhc
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRD 212 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 212 (334)
....+.|+||++.+. +.+. ++|||.||..|+..|+... ..|| .|...+....+..
T Consensus 12 ~~~~~~C~IC~~~~~--~~~~-~~CgH~fC~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLG-------KRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBCS--SEEE-ETTTEEEEHHHHHHCTTCS-------SBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCCccCCcccC--CCEE-ccCCCHHHHHHHHHHHHCC-------CcCc--CcCchhCHhhccC
Confidence 356789999999875 4454 4899999999999988542 5899 6999988776654
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=6.1e-08 Score=68.73 Aligned_cols=54 Identities=20% Similarity=0.599 Sum_probs=41.7
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYC 210 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 210 (334)
..+.+.|+||++.+. +.+. ++|||.||..|+..|+.. ....|| .|...+..+.+
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC--SPKQ-TECGHRFCESCMAALLSS------SSPKCT--ACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEES--SCCC-CSSSCCCCHHHHHHHHTT------SSCCCT--TTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhc--CeeE-CCCCCHHHHHHHHHHHHh------CcCCCC--CCCcCCChhhc
Confidence 355799999999876 3343 599999999999999851 245799 59988876543
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.53 E-value=4.3e-08 Score=68.73 Aligned_cols=56 Identities=23% Similarity=0.611 Sum_probs=43.9
Q ss_pred ccccccccccccCC----ceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhcc
Q 019929 149 PFVCEICAEQKTVH----KSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDI 213 (334)
Q Consensus 149 ~~~C~IC~e~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~l 213 (334)
.++|+||++.+... +.+..++|||.||..|+..|+.. ...|| .|...+....+..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHPI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCTTTCEEEC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCC--CCCccCCccceeee
Confidence 57899999987532 33455699999999999999975 24899 69999888776654
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=8.4e-08 Score=75.23 Aligned_cols=69 Identities=20% Similarity=0.482 Sum_probs=49.7
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccC-ChHHHHHHHHHH
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDIL-PQDVFDRWGAAL 226 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll-~~~~~~~y~~~~ 226 (334)
.+.|+||++.+. +++. ++|||.||..|+..|+... .....|| .|...+....+.... ..++.+.+.+.+
T Consensus 21 ~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELIK--EPVS-TKCDHIFCKFCMLKLLNQK----KGPSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCCS--SCCB-CTTSCCCCSHHHHHHHHSS----SSSCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhhc--CeEE-CCCCCHHHHHHHHHHHHhC----CCCCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 578999999875 3343 5999999999999999753 1246899 699988887665432 245555555444
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.52 E-value=1.6e-07 Score=68.72 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=48.4
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhh-ccCChHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCR-DILPQDVFDRWG 223 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~-~ll~~~~~~~y~ 223 (334)
...+.|+||++.+. +++.+ +|||.||+.|+..|+.. + ...|| .|+..+....+. +..-.++++.|.
T Consensus 6 ~~~~~C~IC~~~~~--~Pv~~-~CgH~fc~~Ci~~~~~~----~--~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPVIV-STGQTYERSSIQKWLDA----G--HKTCP--KSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCS--SEEEE-TTTEEEEHHHHHHHHTT----T--CCBCT--TTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCcccccc--CCEEc-CCCCeecHHHHHHHHHH----C--cCCCC--CCcCCCChhhCccCHHHHHHHHHHH
Confidence 45799999999875 55554 89999999999999963 1 45899 599888765543 333355666554
No 24
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.49 E-value=2.1e-07 Score=66.40 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=41.7
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
......|+||++.+.....+..++|+|.||..|+..|+... ..|| .|...+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------KKCP--ICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-------SBCT--TTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-------CCCc--CcCccccC
Confidence 34568899999988665556667999999999999999752 2699 58877654
No 25
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.49 E-value=1.1e-07 Score=64.54 Aligned_cols=50 Identities=28% Similarity=0.587 Sum_probs=39.3
Q ss_pred cccccccccccccC-CceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 148 GPFVCEICAEQKTV-HKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 148 ~~~~C~IC~e~~~~-~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
...+|+||++.+.. ...+.+++|+|.||..|+..|+... ..|| .|...++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCC--CCCCcCC
Confidence 35789999998853 2345667999999999999999864 5799 5877654
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.1e-07 Score=65.25 Aligned_cols=46 Identities=22% Similarity=0.675 Sum_probs=35.6
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCC
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPV 198 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 198 (334)
..+.+.|+||++.+. +++. ++|||.||..|+..|+... .....||.
T Consensus 17 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQ--KPVT-IDCGHNFCLKCITQIGETS----CGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCS--SCEE-CTTSSEECHHHHHHHHHHC----SSCCCCSC
T ss_pred CccCCCCCcCCchhC--CeEE-eCCCCcchHHHHHHHHHcC----CCCCcCcC
Confidence 456899999999876 4454 4999999999999999741 12457884
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=71.58 Aligned_cols=50 Identities=24% Similarity=0.673 Sum_probs=39.4
Q ss_pred CccccccccccccccCCceeEecC-CCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCC
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKG-CSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLL 205 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l 205 (334)
....+.|+||++.+. +++.+ + |||.||..|+..|+... + ...|| .|...+
T Consensus 10 ~~~~~~C~IC~~~~~--~p~~~-~~CgH~fC~~Ci~~~~~~~---~--~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMT--DAVVI-PCCGNSYCDECIRTALLES---D--EHTCP--TCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECS--SCEEC-TTTCCEECHHHHHHHHHHC---T--TCCCT--TTCCSS
T ss_pred CCcCCCCCCCChhhc--CceEC-CCCCCHHHHHHHHHHHHhc---C--CCcCc--CCCCcC
Confidence 356799999999876 55554 7 99999999999998742 1 35899 588876
No 28
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.46 E-value=3e-07 Score=73.01 Aligned_cols=83 Identities=19% Similarity=0.478 Sum_probs=58.0
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccCChHHHHHHHHH
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDILPQDVFDRWGAA 225 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll~~~~~~~y~~~ 225 (334)
..+.+.|+||++.+. +++. ++|||.||..|+..|+... ...|| .|...+....+. ....+.+ .
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~---~~~~l~~---~ 77 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQLF---PDNFAKR---E 77 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGCE---ECHHHHH---H
T ss_pred CCCCCCCCcCChhhc--CeEE-CCcCChhhHHHHHHHHhhC------CCCCC--CCCCCcCHHhcc---cCHHHHH---H
Confidence 456799999999875 4454 5899999999999999753 23899 698888775432 2122111 1
Q ss_pred HHHhhcCCCCcccCCCCCCCceEEcC
Q 019929 226 LCEAVIPGAQKFYCPFKDCSAMLIDD 251 (334)
Q Consensus 226 ~~~~~~~~~~~~~CP~p~C~~~~~~~ 251 (334)
+ ..-.++||+.+|+..+...
T Consensus 78 i------~~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 78 I------LSLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp H------HTSEEECSSTTCCCEEEGG
T ss_pred H------ccceeECCCCCCCCEEeeH
Confidence 1 1234699999999877664
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=72.83 Aligned_cols=67 Identities=24% Similarity=0.538 Sum_probs=48.3
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhc-cCChHHHHHHHHH
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRD-ILPQDVFDRWGAA 225 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~-ll~~~~~~~y~~~ 225 (334)
+.+.|+||++.+. +.+.+.+|||.||..|+..|+.. ...|| .|...+....+.. ..-.++++.|.+.
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY-------KTQCP--TCCVTVTEPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT-------CCBCT--TTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC-------CCCCC--CCCCcCChhhCCcCHHHHHHHHHHHHH
Confidence 4688999999876 45555589999999999999863 24899 6999888754432 2224555555543
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.45 E-value=9e-08 Score=70.42 Aligned_cols=57 Identities=19% Similarity=0.419 Sum_probs=41.7
Q ss_pred CccccccccccccccCCceeEe-cCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHI-KGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYC 210 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 210 (334)
..+.++|+||++.+...+...+ ++|||.||..||..++.. ....|| .|...+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP--~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCP--ACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCT--TTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCC--CCCCccCCCch
Confidence 3567899999998864433221 259999999999988743 245899 69988876544
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=9.2e-08 Score=67.55 Aligned_cols=58 Identities=22% Similarity=0.449 Sum_probs=43.5
Q ss_pred ccccccccc-cccCCce-eEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccC
Q 019929 149 PFVCEICAE-QKTVHKS-FHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDIL 214 (334)
Q Consensus 149 ~~~C~IC~e-~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll 214 (334)
.+.|+||++ .+..... +.+++|||.||..|+..|+... ...|| .|+..+....+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG------AGNCP--ECGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT------SSSCT--TTCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC------CCcCC--CCCCccccccceeec
Confidence 578999999 6654332 2346999999999999998631 45899 699999887776543
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.43 E-value=5.9e-07 Score=73.32 Aligned_cols=47 Identities=28% Similarity=0.789 Sum_probs=37.3
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
.+.|+||++.+. +++. ++|||.||..|+..|+.. ...|| .|...+..
T Consensus 53 ~~~C~iC~~~~~--~~~~-~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI--EAVT-LNCAHSFCSYCINEWMKR-------KIECP--ICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS--SEEE-ETTSCEEEHHHHHHHTTT-------CSBCT--TTCCBCCC
T ss_pred cCCCcccCcccC--CceE-CCCCCCccHHHHHHHHHc-------CCcCC--CCCCcCCC
Confidence 578999999875 5554 599999999999999853 24799 58887754
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.42 E-value=2.6e-07 Score=67.06 Aligned_cols=51 Identities=22% Similarity=0.608 Sum_probs=39.6
Q ss_pred CccccccccccccccCCceeEecC-CCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKG-CSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....+.|+||++.+. +++. ++ |||.||..|+..|+... + ...|| .|...+.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~-~~~CgH~fC~~Ci~~~~~~~---~--~~~CP--~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVV-IPCCGNSYCDECIRTALLES---D--EHTCP--TCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEE-CSSSCCEECTTHHHHHHHHS---S--SSCCS--SSCCSSC
T ss_pred CCCCCCCcCCChHHh--CCeE-cCCCCCHHHHHHHHHHHHhc---C--CCcCC--CCCCcCC
Confidence 456899999999876 4555 47 99999999999999753 1 35899 5887543
No 34
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=4.2e-07 Score=69.26 Aligned_cols=61 Identities=23% Similarity=0.493 Sum_probs=46.1
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCC-Cchhhh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGL-LEPEYC 210 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~-l~~~~i 210 (334)
...+.|+||++.+. +++.+..|||.||+.|+..|+...-.. .....||..+|... +....+
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~-~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKR-KKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTT-TCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCc-CCCCCCCcCcCcccccCHhhC
Confidence 45799999999876 667653599999999999999864211 13568998889877 765544
No 35
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=2e-07 Score=67.78 Aligned_cols=52 Identities=23% Similarity=0.585 Sum_probs=42.2
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
.+..+|+||++.+...+.+..++|+|.||..|+..|+... ..|| -|...+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-------CcCc--CcCCcCCC
Confidence 4568899999998776666667999999999999998752 3799 58877664
No 36
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=5.1e-07 Score=66.58 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=39.6
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....+.|+||++.+. +++ +++|||.||..|+..|+.. ...|| .|...+.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ--NPV-VTKCRHYFCESCALEHFRA-------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCC--SEE-ECTTSCEEEHHHHHHHHHH-------CSBCS--SSCCBCC
T ss_pred CCCCCCCcCCCchhc--Cee-EccCCCHhHHHHHHHHHHC-------CCcCC--CcCcccc
Confidence 345789999999875 445 4699999999999999964 34899 6988876
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.38 E-value=4.8e-08 Score=80.24 Aligned_cols=85 Identities=19% Similarity=0.447 Sum_probs=55.1
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhc------cCChHHH
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRD------ILPQDVF 219 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~------ll~~~~~ 219 (334)
....+.|+||++.+. +++. ++|||.||..|+..|+.. ....|| .|...+....... ++....+
T Consensus 28 l~~~~~C~IC~~~~~--~pv~-~~CgH~FC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 28 LEAKYLCSACRNVLR--RPFQ-AQCGHRYCSFCLASILSS------GPQNCA--ACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp CCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHGGG------SCEECH--HHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred CCcCcCCCCCChhhc--CcEE-CCCCCccCHHHHHHHHhc------CCCCCC--CCCCcccccccccccchhhhcccHHH
Confidence 356799999999876 4555 599999999999999853 235899 5776554332221 2222222
Q ss_pred HHHHHHHHHhhcCCCCcccCCCCCCCceEEc
Q 019929 220 DRWGAALCEAVIPGAQKFYCPFKDCSAMLID 250 (334)
Q Consensus 220 ~~y~~~~~~~~~~~~~~~~CP~p~C~~~~~~ 250 (334)
++ .+ ..-.++||+.+|...+..
T Consensus 97 ~~---~i------~~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 97 RR---EV------ESLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp HH---HH------HTSEEECCSTTCCCEEEH
T ss_pred HH---HH------cccccccCCCCCCCEeEH
Confidence 21 11 123469999899877654
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.36 E-value=1.7e-07 Score=63.76 Aligned_cols=50 Identities=18% Similarity=0.523 Sum_probs=38.3
Q ss_pred cccccccccccccCCceeEecC-CCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 148 GPFVCEICAEQKTVHKSFHIKG-CSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
+..+|+||++.+...+....++ |+|.||..|+..|+.. ...|| -|...+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-------CCcCc--CCCCEeE
Confidence 4678999999987655444455 9999999999999854 23799 5877654
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.35 E-value=1.5e-07 Score=74.38 Aligned_cols=54 Identities=24% Similarity=0.571 Sum_probs=41.7
Q ss_pred CCCCccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 143 SGIVYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 143 ~~~~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
.......+.|+||++.+. +++.+ +|||.||..|+..|+.. + ...|| .|...+..
T Consensus 9 ~~~~~~~~~C~iC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~----~--~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 9 AIPSLSECQCGICMEILV--EPVTL-PCNHTLCKPCFQSTVEK----A--SLCCP--FCRRRVSS 62 (115)
T ss_dssp CCCCHHHHBCTTTCSBCS--SCEEC-TTSCEECHHHHCCCCCT----T--TSBCT--TTCCBCHH
T ss_pred ccCCCCCCCCccCCcccC--ceeEc-CCCCHHhHHHHHHHHhH----C--cCCCC--CCCcccCc
Confidence 334566899999999876 45554 99999999999988753 1 35899 69988875
No 40
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.33 E-value=4e-07 Score=68.87 Aligned_cols=52 Identities=21% Similarity=0.524 Sum_probs=41.8
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
.....|+||++.+...+.+..++|+|.||..|+..|+... -.|| -|...++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-------~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-------GTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-------CBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-------CcCc--CcCccCCC
Confidence 4578899999998766666667999999999999998542 3799 58887764
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.31 E-value=3.3e-07 Score=71.54 Aligned_cols=51 Identities=24% Similarity=0.657 Sum_probs=40.8
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPE 208 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 208 (334)
...+.|+||++.+. +++.+.+|||.||..|+..|+... ..|| .|...+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~-------~~CP--~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETS-------KYCP--ICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSC-------SBCT--TTCCBSCSS
T ss_pred CCcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhC-------CcCc--CCCcccccc
Confidence 35789999999876 556656999999999999998642 5899 688877653
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=5.3e-07 Score=61.81 Aligned_cols=46 Identities=24% Similarity=0.630 Sum_probs=34.3
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCC
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPV 198 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 198 (334)
....+.|+||++.+.. .+ .++|||.||..|+..|+... .....||.
T Consensus 12 ~~~~~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE--PV-IIECGHNFCKACITRWWEDL----ERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSS--CC-CCSSCCCCCHHHHHHHTTSS----CCSCCCSC
T ss_pred cccCCCCccCCcccCc--cE-eCCCCCccCHHHHHHHHHhc----CCCCCCCC
Confidence 4567899999998763 33 35999999999999997531 12457883
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.24 E-value=4.4e-07 Score=72.61 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=39.5
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
..+.|+||++.+. +++. ++|||.||..|+..|+.. ....|| .|...+..
T Consensus 51 ~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPIT-TVCQHNVCKDCLDRSFRA------QVFSCP--ACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEE-CTTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCT
T ss_pred cCCCCCcCChHHc--CcEE-eeCCCcccHHHHHHHHhH------CcCCCC--CCCccCCC
Confidence 4688999999876 5554 499999999999999973 235899 69888876
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.19 E-value=3e-06 Score=63.21 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=41.7
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYC 210 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 210 (334)
...+.|+||++.+. +++.+ +|||.||+.|+..|+.. ...|| .|+..+....+
T Consensus 12 p~~~~CpI~~~~m~--dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DPVRL-PSGTVMDRSIILRHLLN-------SPTDP--FNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCS--SEEEC-TTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCCGGGC
T ss_pred chheECcccCchhc--CCeEC-CCCCEECHHHHHHHHhc-------CCCCC--CCcCCCChHhc
Confidence 45899999999876 66655 89999999999999974 24799 58888876543
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.19 E-value=1.1e-06 Score=62.34 Aligned_cols=48 Identities=27% Similarity=0.638 Sum_probs=37.9
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....|+||++.+. +....++|||.||..|+..|+... ..|| .|...+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQN-------PTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHS-------CSTT--TTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCc-------CcCc--CCChhhH
Confidence 3578999999875 334567999999999999998642 3899 5887776
No 46
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.18 E-value=9.8e-07 Score=78.88 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=53.0
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhc-cCChHHHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRD-ILPQDVFDRWGAA 225 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~-ll~~~~~~~y~~~ 225 (334)
...+.|+||++.+. +++....|||.||+.|+..|+... ....||..+|...+....+.. ..-..+.+.+.+.
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~-----~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGY-----TTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTC-----SCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhC-----CCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 46899999999876 677656899999999999998642 246899888999888765532 1113445555544
Q ss_pred H
Q 019929 226 L 226 (334)
Q Consensus 226 ~ 226 (334)
.
T Consensus 252 ~ 252 (267)
T 3htk_C 252 E 252 (267)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2.5e-07 Score=66.22 Aligned_cols=49 Identities=27% Similarity=0.631 Sum_probs=38.1
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPE 208 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 208 (334)
.....|+||++.+.. ..++|+|.||..|+..|+.. ...|| .|...+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-------HRNCP--ICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-------CSSCH--HHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-------cCcCC--CcCCcccCC
Confidence 457899999998764 34699999999999998752 45799 587766644
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.16 E-value=5.4e-06 Score=68.63 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=40.0
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchh
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPE 208 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 208 (334)
.+.|+||++.+. +++. ++|||.||..|+..|+.. ....|| .|...+...
T Consensus 78 ~~~C~IC~~~~~--~pv~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY--QPVT-TECFHNVCKDCLQRSFKA------QVFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS--SEEE-CTTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCTT
T ss_pred CCEeecCChhhc--CCEE-cCCCCchhHHHHHHHHHh------CCCcCC--CCCccCCCC
Confidence 578999999875 5554 599999999999999974 245899 699888875
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.11 E-value=2.7e-06 Score=66.77 Aligned_cols=55 Identities=24% Similarity=0.518 Sum_probs=39.9
Q ss_pred ccccccccccccCCc---------------eeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 149 PFVCEICAEQKTVHK---------------SFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
..+|+||++.+.... ...+++|+|.||..|+..|+...- ......|| -|...+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCP--SCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCT--TTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCC--CCCCccCC
Confidence 468999999985422 233679999999999999995422 12346899 68877654
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=3.5e-07 Score=72.50 Aligned_cols=65 Identities=15% Similarity=0.409 Sum_probs=45.0
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhc-cCChHHHHHHHHH
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRD-ILPQDVFDRWGAA 225 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~-ll~~~~~~~y~~~ 225 (334)
+.+.|+||++.+. +++.+.+|||.||..|+..|+. ..|| .|...+....+.. ..-.++++.|.+.
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~---------~~CP--~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG---------TGCP--VCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT---------TBCS--SSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc---------CCCc--CCCCcCccccccccHHHHHHHHHHHHH
Confidence 3688999999876 4454448999999999999875 5799 6998886544332 2223455555443
No 51
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=3.1e-06 Score=62.48 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=39.6
Q ss_pred ccccccccccccccC-----------Cc-eeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhh
Q 019929 147 YGPFVCEICAEQKTV-----------HK-SFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~-----------~~-~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 209 (334)
.+..+|+||++.+.. .+ ...+..|+|.|+..|+..|+... -.|| -|...+....
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP--~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-------NRCP--LCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-------CBCT--TTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-------CCCC--CcCCCcchhh
Confidence 356778888888743 22 44555799999999999998652 2899 5988876543
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.09 E-value=4.9e-06 Score=63.77 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=41.5
Q ss_pred CccccccccccccccCCceeEecCCC-CcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCS-HAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 209 (334)
....+.|+||++.+. +++. ++|| |.||+.|+..|+.. ...|| .|+..+....
T Consensus 19 ~p~~~~CpI~~~~m~--dPV~-~~cG~htf~r~cI~~~l~~-------~~~cP--~~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC--DPVV-LPSSRVTVDRSTIARHLLS-------DQTDP--FNRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCS--SEEE-CTTTCCEEEHHHHHHHTTT-------SCBCT--TTCSBCCTTT
T ss_pred CcHhcCCcCcccccc--CCeE-CCCCCeEECHHHHHHHHHh-------CCCCC--CCCCCCChhh
Confidence 356899999999876 6665 4899 99999999999974 23799 5888887654
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.05 E-value=3.4e-06 Score=64.97 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=41.6
Q ss_pred CccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 209 (334)
....+.|+||++.+. +++.+ +|||.||+.|+..|+.. ...|| -|+..+....
T Consensus 26 ~p~~~~CpI~~~~m~--dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMT--DPVRL-PSGTIMDRSIILRHLLN-------SPTDP--FNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCS--SEEEE-TTTEEEEHHHHHHHTTS-------CSBCS--SSCCBCCTTS
T ss_pred CcHhhCCcCccCccc--CCeEC-CCCCEEchHHHHHHHHc-------CCCCC--CCCCCCChhh
Confidence 356899999999876 66765 79999999999999963 24799 5888887644
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.01 E-value=3.7e-06 Score=70.60 Aligned_cols=51 Identities=27% Similarity=0.766 Sum_probs=40.8
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
...+.|+||++.+. +++.+++|||.||..|+..|+... ...|| .|...+..
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSG------NKECP--TCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTT------CCBCT--TTCCBCCS
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhC------cCCCC--CCCCcCCC
Confidence 45789999999876 456556999999999999999741 35799 69888753
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.98 E-value=1.3e-05 Score=72.50 Aligned_cols=52 Identities=13% Similarity=-0.004 Sum_probs=41.1
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 209 (334)
...+.|+||++.+. +++.+ +|||.||+.|+..|+... + ..|| .|+..++...
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~-~~gh~f~~~~i~~~~~~~---~---~~cP--~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCIT-PSGITYDRKDIEEHLQRV---G---HFNP--VTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEEC-SSCCEEETTHHHHHHHHT---C---SSCT--TTCCCCCGGG
T ss_pred CcccCCcCcCCHhc--CCeEC-CCCCEECHHHHHHHHHHC---C---CCCc--CCCCCCchhc
Confidence 45799999999876 66654 899999999999999752 2 2399 5998887654
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.93 E-value=2.3e-05 Score=66.49 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=41.6
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 209 (334)
...+.|+||++.+. +++.+ +|||.||+.|+..|+... + . .|| -|+..+....
T Consensus 104 p~~f~CPI~~elm~--DPV~~-~~Ghtfer~~I~~~l~~~---~--~-tcP--~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCIT-PSGITYDRKDIEEHLQRV---G--H-FDP--VTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEEC-TTSCEEEHHHHHHHHHHT---C--S-BCT--TTCCBCCGGG
T ss_pred cHhhcccCccccCC--CCeEC-CCCCEECHHHHHHHHHhC---C--C-CCC--CCcCCCChhh
Confidence 46899999999876 66665 999999999999999752 2 1 699 5888887654
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.92 E-value=2e-06 Score=58.78 Aligned_cols=46 Identities=20% Similarity=0.657 Sum_probs=35.2
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
.+.+.|+||++.+.. +. .++|||.||..|+.. ..+.|| .|...+..
T Consensus 4 ~~~~~C~IC~~~~~~--p~-~l~CgH~fC~~Ci~~----------~~~~CP--~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC--PK-LLPCLHTLCSGCLEA----------SGMQCP--ICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC--CS-CSTTSCCSBTTTCSS----------SSSSCS--SCCSSSSC
T ss_pred ccCCCceEeCCccCC--eE-EcCCCCcccHHHHcc----------CCCCCC--cCCcEeec
Confidence 346889999998763 33 469999999999876 246899 58877654
No 58
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=4.6e-05 Score=56.05 Aligned_cols=55 Identities=18% Similarity=0.409 Sum_probs=42.6
Q ss_pred CccccccccccccccCCceeEecCCC-----CcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchh
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCS-----HAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPE 208 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 208 (334)
......|.||++++...+.+ +++|. |.|...|+.+|+... ....|| -|+..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~Cp--lCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCE--LCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCS--SSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC-----CCCCCC--CCCCeeecC
Confidence 44567899999988765555 46896 999999999999864 235899 598877654
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.73 E-value=2.2e-05 Score=62.78 Aligned_cols=59 Identities=22% Similarity=0.586 Sum_probs=45.5
Q ss_pred CccccccccccccccCC----ceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhcc
Q 019929 146 VYGPFVCEICAEQKTVH----KSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDI 213 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~l 213 (334)
......|+||++.+... .....++|||.||..|+..|+... -.|| .|...+..+.+..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-------SBCT--TTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-------CCCC--CCCCcCChhcceee
Confidence 45678999999987531 223456999999999999999752 3899 69999988877654
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.65 E-value=1.7e-05 Score=57.44 Aligned_cols=43 Identities=23% Similarity=0.655 Sum_probs=34.0
Q ss_pred ccccccccccccCCceeEecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
...|+||++.+. +.+ +++|||. ||..|+..+ ..|| -|...+..
T Consensus 24 ~~~C~iC~~~~~--~~~-~~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI--AIV-FVPCGHLVTCKQCAEAV-----------DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC--CEE-EETTCCBCCCHHHHTTC-----------SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCCC--CEE-EcCCCChhHHHHhhhcC-----------ccCC--CcCcCccC
Confidence 578999999764 444 4599999 999998876 4899 58887764
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0001 Score=52.31 Aligned_cols=46 Identities=22% Similarity=0.637 Sum_probs=34.9
Q ss_pred CccccccccccccccCCceeEecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 146 VYGPFVCEICAEQKTVHKSFHIKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 146 ~~~~~~C~IC~e~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
......|.||++... + ..+++|||. ||..|+.. .-.|| -|...+..
T Consensus 12 ~~~~~~C~IC~~~~~--~-~v~~pCgH~~~C~~C~~~-----------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV--N-WVLLPCRHTCLCDGCVKY-----------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCC--C-CEETTTTBCCSCTTHHHH-----------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCCcCcCCC--C-EEEECCCChhhhHHHHhc-----------CCCCC--CCCcchhc
Confidence 345789999998754 3 345799999 99999983 13799 58887664
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=4e-05 Score=55.46 Aligned_cols=43 Identities=23% Similarity=0.665 Sum_probs=32.9
Q ss_pred ccccccccccccCCceeEecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
..+|+||++.+. +++ +++|||. ||..|+.. ...|| -|...+..
T Consensus 25 ~~~C~IC~~~~~--~~~-~~pCgH~~~C~~C~~~-----------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI--AIV-FVPCGHLVTCKQCAEA-----------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC--CBC-CSSSCCCCBCHHHHHH-----------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCCC--CEE-EecCCCHHHHHHHhhC-----------CCCCc--cCCceecC
Confidence 578999999765 333 4699999 99999953 14899 58887754
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.40 E-value=9.8e-05 Score=57.29 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=38.5
Q ss_pred cccccccccccccCC---------------ceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 148 GPFVCEICAEQKTVH---------------KSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~---------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
....|.||++.+... ..+.+++|+|.|+..|+..|+.. ...|| -|...+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP--~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCP--LDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-------CSBCS--SSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-------CCcCc--CCCCccee
Confidence 456799999987643 12455799999999999999864 24799 68887654
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.26 E-value=0.00018 Score=68.09 Aligned_cols=50 Identities=30% Similarity=0.686 Sum_probs=38.6
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhh
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 209 (334)
..+|+||++.+. +++ .++|||.||..|+..|+.. ....|| -|...+....
T Consensus 332 ~~~C~ICle~~~--~pv-~lpCGH~FC~~Ci~~wl~~------~~~~CP--~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDK--DVK-IEPCGHLMCTSCLTSWQES------EGQGCP--FCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBC--CEE-EETTCCEECHHHHHHHHHH------TCSBCT--TTCCBCCEEE
T ss_pred CCCCCccCcCCC--CeE-EeCCCChhhHHHHHHHHhc------CCCCCC--CCCCccCCce
Confidence 478999999864 444 4599999999999999873 134899 6988877644
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.22 E-value=0.00015 Score=50.73 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=36.1
Q ss_pred ccccccccccccccCCceeE-ecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 147 YGPFVCEICAEQKTVHKSFH-IKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~-~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....+|.||++... +... .++|||. ||..|+..+... .-.|| -|...+.
T Consensus 6 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR-------NKPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT-------TCCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc-------CCcCC--CcCcchh
Confidence 34678999999754 3332 2499999 899999988753 23799 5888775
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.21 E-value=0.0001 Score=54.02 Aligned_cols=43 Identities=30% Similarity=0.827 Sum_probs=33.5
Q ss_pred ccccccccccccCCceeEecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
...|.||++... +.+ +++|||. ||..|+..+ ..|| -|...+..
T Consensus 18 ~~~C~IC~~~~~--~~v-~~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NST-FCPCGHTVCCESCAAQL-----------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEE-EETTCBCCBCHHHHTTC-----------SBCT--TTCCBCCE
T ss_pred CCEeEEeCcccC--cEE-EECCCCHHHHHHHHHhc-----------CcCC--CCCchhhC
Confidence 467999998754 444 4599999 999999754 1899 69887775
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.19 E-value=0.00018 Score=50.20 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=35.7
Q ss_pred cccccccccccccCCceeEecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....|.||++..... .+.+++|||. ||..|...+.... -.|| -|...+.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~-------~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAG-------ASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTT-------CBCT--TTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhC-------CcCC--CcCchhh
Confidence 357899999875421 2233599999 9999999887531 3799 5888775
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.00062 Score=49.08 Aligned_cols=56 Identities=20% Similarity=0.443 Sum_probs=41.4
Q ss_pred CCCCccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 143 SGIVYGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 143 ~~~~~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
........+|.||++.+.... ....|+|.|...|+..|+..+- .-.|| .|...+..
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~-----~~~CP--~Cr~~w~~ 64 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNA-----EPRCP--HCNDYWPH 64 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCS-----SCCCT--TTCSCCCS
T ss_pred hhccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcC-----CCCCC--CCcCcCCC
Confidence 344556789999999887543 3348999999999999996531 24799 58877653
No 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.84 E-value=0.00017 Score=56.83 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=0.5
Q ss_pred ccccccccccccCCc---------------eeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 149 PFVCEICAEQKTVHK---------------SFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
.-.|.||++.+...- .+..++|+|.|+..|+..|+.. .-.|| -|...+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-------~~~CP--~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCP--LDNREWEF 112 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-------CCcCC--CCCCeeee
Confidence 468999999885321 2233589999999999999875 23799 58776543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.42 E-value=0.00083 Score=62.89 Aligned_cols=44 Identities=25% Similarity=0.798 Sum_probs=34.6
Q ss_pred cccccccccccccCCceeEecCCCCc-ccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHA-YCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
+...|+||++.+. +++. ++|||. ||..|+..+ ..|| -|...+..
T Consensus 294 ~~~~C~IC~~~~~--~~v~-lpCgH~~fC~~C~~~~-----------~~CP--~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV--SVVF-IPCGHLVVCQECAPSL-----------RKCP--ICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC--CEEE-ETTCCEEECTTTGGGC-----------SBCT--TTCCBCCE
T ss_pred CCCCCCccCCcCC--ceEE-cCCCChhHhHHHHhcC-----------CcCC--CCCCCccC
Confidence 4688999999765 4444 599999 999999865 4899 58887764
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.09 E-value=0.0067 Score=41.83 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=39.5
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhc
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRD 212 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 212 (334)
.+.|+|+++.+. +++....+||.|++.|+..|+... + .||. .+..+...++..
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~---~----~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT---G----NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH---S----BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC---C----CCcC--CcCCCChhhcEE
Confidence 478999999876 555544899999999999999752 2 4894 667777665543
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.74 E-value=0.016 Score=53.58 Aligned_cols=61 Identities=15% Similarity=0.385 Sum_probs=43.9
Q ss_pred ccccccccccccccCCc-ee----EecCCCCcccHHHHHHHHHhhhhC----CeeeeecCCCcCCCCCchhh
Q 019929 147 YGPFVCEICAEQKTVHK-SF----HIKGCSHAYCTDCMVKYVAAKLEE----NITAIRCPVVDCRGLLEPEY 209 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~-~~----~~~~C~H~fC~~Cl~~~~~~~i~~----~~~~i~CP~~~C~~~l~~~~ 209 (334)
....+|+||++.+.... .. ....|+|.|...|+..|+...-.. ++..=.|| -|...++-.+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCccH
Confidence 45789999999876522 21 124799999999999999875432 23444899 6999887544
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.45 E-value=0.014 Score=44.01 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=33.7
Q ss_pred cccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCch
Q 019929 150 FVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEP 207 (334)
Q Consensus 150 ~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 207 (334)
..|++|--.+. --..+.+|.|.||.+|...|.+... =.|| .|...+..
T Consensus 2 hfC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~------k~Cp--~C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGD------KMCP--GCSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTC------CBCT--TTCCBCSE
T ss_pred eecCccCCCeE--EEeeeccccccHHHHHHHHHHhccC------CCCc--CcCCeeee
Confidence 35888854433 3345679999999999999886532 2688 68776653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.90 E-value=0.012 Score=44.50 Aligned_cols=34 Identities=18% Similarity=0.612 Sum_probs=25.5
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHH
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKY 182 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~ 182 (334)
...|+||.+.+........+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5789999976433233444799999999999983
No 75
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.79 E-value=0.02 Score=39.35 Aligned_cols=38 Identities=34% Similarity=0.855 Sum_probs=31.4
Q ss_pred CcccCCCCCCCceEEcCCccccccccCCc--cccccccccCccC
Q 019929 235 QKFYCPFKDCSAMLIDDGEEVIQESECPN--CRRLFCAQCQVPW 276 (334)
Q Consensus 235 ~~~~CP~p~C~~~~~~~~~~~~~~~~C~~--C~~~fC~~C~~~~ 276 (334)
....|| .|...+.... ..+.+.|.. |+..||+.|+.+|
T Consensus 5 ~~k~CP--~C~~~Iek~~--GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDG--GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSCC--SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeCC--CCCcEEECCCCcCCEEeeCcCCCc
Confidence 446898 9998887754 466799987 9999999999987
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.91 E-value=0.13 Score=36.85 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=37.9
Q ss_pred ccccccccccccccCCceeEec-CCCCcccHHHHHHHHHhhhhCCeeeeecCC
Q 019929 147 YGPFVCEICAEQKTVHKSFHIK-GCSHAYCTDCMVKYVAAKLEENITAIRCPV 198 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 198 (334)
...+-|.+|-+.+....++... .=.|.||..|-+.+++.+-.. ..+.||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~--~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGAT--GEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSS--SCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCC--CcEECCC
Confidence 4578899999988766655432 236999999999999987543 4678886
No 77
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.25 E-value=0.13 Score=35.02 Aligned_cols=49 Identities=18% Similarity=0.446 Sum_probs=35.0
Q ss_pred cccccccccccccCCceeEecCCC--C---cccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCS--H---AYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~--H---~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....|.||+++.. +.. +++|. | .|...|+..|+..+- ...|| -|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~-----~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISR-----NTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHT-----CSBCT--TTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCC-----CCccC--CCCCeee
Confidence 4568999998743 223 35755 4 899999999997542 35899 5887664
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.58 E-value=0.21 Score=44.02 Aligned_cols=51 Identities=24% Similarity=0.532 Sum_probs=39.1
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchh
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPE 208 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 208 (334)
...|.||.+-+... .....|+|.|...|+..|+... ....|| .|+..++.+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~-----~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN-----AEPRCP--HCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC-----SSCBCT--TTCCBCCSC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC-----CCCCCC--CCCCCCCCC
Confidence 57899999987643 3344599999999999998642 235899 698877654
No 79
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=89.51 E-value=0.61 Score=37.23 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=24.1
Q ss_pred cccccccccccccC--CceeEecCCCCcccHHHHH
Q 019929 148 GPFVCEICAEQKTV--HKSFHIKGCSHAYCTDCMV 180 (334)
Q Consensus 148 ~~~~C~IC~e~~~~--~~~~~~~~C~H~fC~~Cl~ 180 (334)
....|.+|...+.. ........|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45789999998832 2234456899999998854
No 80
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=86.66 E-value=0.34 Score=36.33 Aligned_cols=29 Identities=38% Similarity=0.868 Sum_probs=20.3
Q ss_pred ccCCCCCCCceEEcCCccccccccCCccccccccccCc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQV 274 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 274 (334)
..|| -|...+.. .+.|..||+.||..|..
T Consensus 23 ~~C~--IC~~~~~~-------p~~~~~CgH~FC~~Ci~ 51 (100)
T 3lrq_A 23 FRCF--ICMEKLRD-------ARLCPHCSKLCCFSCIR 51 (100)
T ss_dssp TBCT--TTCSBCSS-------EEECTTTCCEEEHHHHH
T ss_pred CCCc--cCCccccC-------ccccCCCCChhhHHHHH
Confidence 4677 67665431 25667899999999954
No 81
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=86.58 E-value=0.23 Score=33.31 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=19.1
Q ss_pred CccccCCCCceeeeccCCCceEe-ecCC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKC-RSVF 334 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC-~Cg~ 334 (334)
..+.||+|+..+.-...-+.+.| +|||
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCC
Confidence 35899999984432233469999 5997
No 82
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.51 E-value=0.32 Score=31.90 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=19.1
Q ss_pred CCccccCCCCcee-eeccCCCceEe-ecCC
Q 019929 307 EKWKRCPNCRYYV-EKKDGCMYMKC-RSVF 334 (334)
Q Consensus 307 ~~~k~CP~C~~~I-eK~~GCnhMtC-~Cg~ 334 (334)
...+.||+|+..+ ..+.+ +.+.| +|||
T Consensus 17 ~~~k~CP~CG~~~fm~~~~-~R~~C~kCG~ 45 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHG-DRWACGKCGY 45 (50)
T ss_dssp CSSEECSSSCSSCEEEECS-SEEECSSSCC
T ss_pred EecccCCCCCCceEEecCC-CeEECCCCCC
Confidence 4568999999833 33333 78999 4997
No 83
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=83.03 E-value=0.74 Score=31.75 Aligned_cols=34 Identities=29% Similarity=0.684 Sum_probs=27.1
Q ss_pred ccccccccccccccCCceeEecCC-CCcccHHHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGC-SHAYCTDCMVKYVA 184 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C-~H~fC~~Cl~~~~~ 184 (334)
.+..-|.||.++- .+..+.| +-.||..||+..-.
T Consensus 6 ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCC----eEEecCCCCceehHHHHHHHcc
Confidence 4567899999873 2667799 88999999998763
No 84
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=81.73 E-value=0.76 Score=33.52 Aligned_cols=30 Identities=23% Similarity=0.723 Sum_probs=19.2
Q ss_pred cccCCCCCCCceEEcCCccccccccCCccccccccccCc
Q 019929 236 KFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQV 274 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 274 (334)
.+.|| -|...+... +.-+.||+.||..|..
T Consensus 13 ~~~C~--IC~~~~~~p-------~~~~~CgH~fC~~Ci~ 42 (92)
T 3ztg_A 13 ELLCL--ICKDIMTDA-------VVIPCCGNSYCDECIR 42 (92)
T ss_dssp TTEET--TTTEECSSC-------EECTTTCCEECHHHHH
T ss_pred CCCCC--CCChhhcCc-------eECCCCCCHHHHHHHH
Confidence 35788 777654321 2334499999998854
No 85
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=81.50 E-value=0.77 Score=32.14 Aligned_cols=50 Identities=20% Similarity=0.565 Sum_probs=30.0
Q ss_pred cccCCCCCCCceEEcCCccccccccCCccccccccccCccCCCCCCchhHHHHhhhhhhHHHHHHHHHHHhCCccccCCC
Q 019929 236 KFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVPWHSGINCVEFQKLNKDEREREDILLMKVAQKEKWKRCPNC 315 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~tC~~~~~~~~~~~~~~d~~~~~~~~~~~~k~CP~C 315 (334)
...|| -|...+.. .+.-+.|++.||..|.. . |+.......||.|
T Consensus 15 ~~~C~--IC~~~~~~-------p~~~~~CgH~fC~~Ci~------------~---------------~~~~~~~~~CP~C 58 (74)
T 2yur_A 15 ELLCL--ICKDIMTD-------AVVIPCCGNSYCDECIR------------T---------------ALLESDEHTCPTC 58 (74)
T ss_dssp GGSCS--SSCCCCTT-------CEECSSSCCEECTTHHH------------H---------------HHHHSSSSCCSSS
T ss_pred CCCCc--CCChHHhC-------CeEcCCCCCHHHHHHHH------------H---------------HHHhcCCCcCCCC
Confidence 35787 66554321 13333499999998843 1 2223345789999
Q ss_pred Cceeee
Q 019929 316 RYYVEK 321 (334)
Q Consensus 316 ~~~IeK 321 (334)
+..+.+
T Consensus 59 r~~~~~ 64 (74)
T 2yur_A 59 HQNDVS 64 (74)
T ss_dssp CCSSCC
T ss_pred CCcCCC
Confidence 987543
No 86
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.46 E-value=0.7 Score=31.34 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.3
Q ss_pred ccccCCCCceeeec
Q 019929 309 WKRCPNCRYYVEKK 322 (334)
Q Consensus 309 ~k~CP~C~~~IeK~ 322 (334)
...||.|+..+.++
T Consensus 43 ~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 43 AGNCPECGTPLRKS 56 (65)
T ss_dssp SSSCTTTCCCCSSC
T ss_pred CCcCCCCCCccccc
Confidence 46899999988764
No 87
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=80.01 E-value=1.2 Score=28.85 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=21.1
Q ss_pred CccccCCCCc-eeeeccCCCceEee-cCC
Q 019929 308 KWKRCPNCRY-YVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 308 ~~k~CP~C~~-~IeK~~GCnhMtC~-Cg~ 334 (334)
....||.|+. .+.-+..=..+.|. ||.
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 3468999998 77777666789995 985
No 88
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=78.82 E-value=1.1 Score=32.58 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCccccCCCCceeeeccCCCceEee-cCC
Q 019929 307 EKWKRCPNCRYYVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 307 ~~~k~CP~C~~~IeK~~GCnhMtC~-Cg~ 334 (334)
.+.+-||+|...|....+-..++|. ||+
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~ 51 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQ 51 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCC
Confidence 4456799999988887777778885 775
No 89
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=78.40 E-value=5.6 Score=32.29 Aligned_cols=32 Identities=19% Similarity=0.436 Sum_probs=24.4
Q ss_pred cccccccccccccC--CceeEecCCCCcccHHHH
Q 019929 148 GPFVCEICAEQKTV--HKSFHIKGCSHAYCTDCM 179 (334)
Q Consensus 148 ~~~~C~IC~e~~~~--~~~~~~~~C~H~fC~~Cl 179 (334)
....|.+|...|.. +.......|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46889999997632 233455789999999997
No 90
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.01 E-value=1.2 Score=31.03 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.7
Q ss_pred cccCCCCceeeeccC
Q 019929 310 KRCPNCRYYVEKKDG 324 (334)
Q Consensus 310 k~CP~C~~~IeK~~G 324 (334)
..||-|+..|....|
T Consensus 61 ~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 61 RTCPICRADSGPSSG 75 (75)
T ss_dssp SSCTTTCCCCCCCCC
T ss_pred CcCcCcCCcCCCCCC
Confidence 589999999987766
No 91
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=76.85 E-value=1.1 Score=32.58 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.5
Q ss_pred CccccCCCCceeeeccCCCceEee-cCC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg~ 334 (334)
..-.||.|+....+..+=..+.|. ||+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCC
Confidence 457999999999998888899995 986
No 92
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.70 E-value=2 Score=30.29 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.1
Q ss_pred CCccccCCCCceeee
Q 019929 307 EKWKRCPNCRYYVEK 321 (334)
Q Consensus 307 ~~~k~CP~C~~~IeK 321 (334)
.....||.|+..+..
T Consensus 57 ~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 57 KGESSCPVCRISYQP 71 (85)
T ss_dssp TSCCCCTTTCCSSCS
T ss_pred CCCCcCCCCCCccCH
Confidence 446899999998875
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=73.94 E-value=1.3 Score=33.31 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=14.5
Q ss_pred hCCccccCCCCceeeecc
Q 019929 306 KEKWKRCPNCRYYVEKKD 323 (334)
Q Consensus 306 ~~~~k~CP~C~~~IeK~~ 323 (334)
....+.||.|+.+|++.+
T Consensus 34 ~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 34 KKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp HTTCCBCTTTCCBCSEEE
T ss_pred hccCCCCcCcCCeeeeeE
Confidence 356689999999998754
No 94
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.14 E-value=7.4 Score=28.45 Aligned_cols=51 Identities=25% Similarity=0.594 Sum_probs=35.1
Q ss_pred cccccccccccccC---Ccee-EecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCc
Q 019929 148 GPFVCEICAEQKTV---HKSF-HIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLE 206 (334)
Q Consensus 148 ~~~~C~IC~e~~~~---~~~~-~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 206 (334)
....|.||-+++-. .+.| ..-.|+-..|+.|+.--.. +| .-.|| .|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG--~q~Cp--qCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EG--TQNCP--QCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TS--CSSCT--TTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----cc--Ccccc--ccCCccc
Confidence 45789999998632 2334 3457888999999965433 44 34799 6887764
No 95
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=71.68 E-value=5.9 Score=32.27 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=41.7
Q ss_pred ccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccCChHHHHHHHHHHHHhh
Q 019929 151 VCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDILPQDVFDRWGAALCEAV 230 (334)
Q Consensus 151 ~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll~~~~~~~y~~~~~~~~ 230 (334)
.||+|-..+...+.+.. ..+...|.+ ..+.||..+|...+....+... .
T Consensus 55 ~CP~Cr~~~~~~~~~~~-------------~~~~~~i~~--l~v~C~n~GC~~~~~~~~l~~H----------------~ 103 (170)
T 3hcs_A 55 KCPVDNEILLENQLFPD-------------NFAKREILS--LMVKCPNEGCLHKMELRHLEDH----------------Q 103 (170)
T ss_dssp BCTTTCCBCCGGGCEEC-------------HHHHHHHHT--SEEECCSTTCCCEEEGGGHHHH----------------H
T ss_pred CCCCCccCcchhhhhhh-------------HHHHHHHhh--cccCCCCCCCCceecHhHHHHH----------------H
Confidence 78888877665443332 233444432 5789998899998876654311 1
Q ss_pred cC-CCCcccCCCCCCCceEEcC
Q 019929 231 IP-GAQKFYCPFKDCSAMLIDD 251 (334)
Q Consensus 231 ~~-~~~~~~CP~p~C~~~~~~~ 251 (334)
.. ....+.|| +|+..+...
T Consensus 104 ~~C~~~~v~C~--~C~~~~~r~ 123 (170)
T 3hcs_A 104 AHCEFALMDCP--QCQRPFQKF 123 (170)
T ss_dssp TTCTTSEEECT--TTCCEEEGG
T ss_pred hcCCceeeECC--CCChHHHHH
Confidence 11 12346888 999877654
No 96
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=70.64 E-value=1.7 Score=35.43 Aligned_cols=29 Identities=34% Similarity=0.862 Sum_probs=19.2
Q ss_pred ccCCCCCCCceEEcCCccccccccCCccccccccccCc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQV 274 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 274 (334)
..|| -|...+.. .+....||+.||..|..
T Consensus 55 ~~C~--IC~~~~~~-------p~~~~~CgH~fC~~Ci~ 83 (165)
T 2ckl_B 55 LMCP--ICLDMLKN-------TMTTKECLHRFCADCII 83 (165)
T ss_dssp HBCT--TTSSBCSS-------EEEETTTCCEEEHHHHH
T ss_pred CCCc--ccChHhhC-------cCEeCCCCChhHHHHHH
Confidence 4788 67655432 14444699999999854
No 97
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=70.58 E-value=1.8 Score=34.41 Aligned_cols=29 Identities=14% Similarity=0.622 Sum_probs=22.1
Q ss_pred hCCccccCCCCceee-ec---cCCCceEee-cCC
Q 019929 306 KEKWKRCPNCRYYVE-KK---DGCMYMKCR-SVF 334 (334)
Q Consensus 306 ~~~~k~CP~C~~~Ie-K~---~GCnhMtC~-Cg~ 334 (334)
....+.||.|+.+.. +. .|.+.+.|+ |||
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 466799999999653 32 368899996 998
No 98
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=68.40 E-value=1.7 Score=31.33 Aligned_cols=24 Identities=29% Similarity=0.890 Sum_probs=14.3
Q ss_pred ccCCCCCCCceEEcCCccccccccCCcccc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRR 266 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~ 266 (334)
..|| .|+..+..+.. ...|..|+.
T Consensus 3 ~~CP--~C~~~l~~~~~----~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCP--VCHHALERNGD----TAHCETCAK 26 (81)
T ss_dssp CCCS--SSCSCCEECSS----EEECTTTCC
T ss_pred CCCC--CCCCccccCCC----ceECccccc
Confidence 4677 88877665422 345666654
No 99
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=67.84 E-value=1.9 Score=30.21 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=19.9
Q ss_pred CccccCCCCceeeeccCCCceEee-cCC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg~ 334 (334)
..-.|+.|+..++...+ +.+.|+ |||
T Consensus 27 v~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEEECCCCCCcceeCCC-CCccCCCCCc
Confidence 44589999999887654 677896 886
No 100
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.04 E-value=23 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.606 Sum_probs=25.7
Q ss_pred cccccccccccccCCc-eeEecCCCCcccHHHHHHH
Q 019929 148 GPFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVKY 182 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~~ 182 (334)
....|.+|...|.... ......||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4567999998886432 2345689999999997653
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.63 E-value=4.5 Score=29.58 Aligned_cols=42 Identities=24% Similarity=0.624 Sum_probs=31.4
Q ss_pred ccccCCccccccccccCccCCCCCCchhHHHHhhhhhhHHHHHHHHHHHhCCccccCCCCceeeeccCCC
Q 019929 257 QESECPNCRRLFCAQCQVPWHSGINCVEFQKLNKDEREREDILLMKVAQKEKWKRCPNCRYYVEKKDGCM 326 (334)
Q Consensus 257 ~~~~C~~C~~~fC~~C~~~~H~~~tC~~~~~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~IeK~~GCn 326 (334)
..+-|..|++..|..|. +|. .+.+.+-||+|+....+..|+-
T Consensus 34 ~FVAC~eC~FPvCrpCy----------EYE------------------rkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 34 LFVACNECGFPACRPCY----------EYE------------------RREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp BCCSCSSSCCCCCHHHH----------HHH------------------HHTSCSSCTTTCCCCCCCTTCC
T ss_pred EEEeeeccCChhhHHHH----------HHH------------------HhccCccccccCCccccccCCC
Confidence 56889999999998663 232 2567899999999987766653
No 102
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=65.56 E-value=3.1 Score=31.47 Aligned_cols=40 Identities=23% Similarity=0.541 Sum_probs=24.8
Q ss_pred CCccccccccccCccCCCCCCchhHHHHhhhhhhHHHHHHHHHHHhCCccccCCCCceeeeccC
Q 019929 261 CPNCRRLFCAQCQVPWHSGINCVEFQKLNKDEREREDILLMKVAQKEKWKRCPNCRYYVEKKDG 324 (334)
Q Consensus 261 C~~C~~~fC~~C~~~~H~~~tC~~~~~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~IeK~~G 324 (334)
-..|++.||..|...| ... -.......||-|+..+.+..|
T Consensus 58 ~~~C~H~Fh~~Ci~~w------------l~~------------~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAM------------YCN------------GNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp ESSSCCEECHHHHHHH------------HHH------------TCCSSCCBCTTTCCBSSSCSS
T ss_pred cCCCCCcccHHHHHHH------------HHc------------ccCCCCCcCCCCCCccCCCCC
Confidence 3469999999885432 100 001234699999998875443
No 103
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=65.48 E-value=2.3 Score=30.49 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCccccCC--CCceeeeccCCCceEe------ecCC
Q 019929 307 EKWKRCPN--CRYYVEKKDGCMYMKC------RSVF 334 (334)
Q Consensus 307 ~~~k~CP~--C~~~IeK~~GCnhMtC------~Cg~ 334 (334)
...+-||. |+..|....+...++| .|||
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~ 58 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGF 58 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSC
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCC
Confidence 34789997 9999998888899999 6886
No 104
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=64.94 E-value=4 Score=32.39 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCCCcccCCCCCCCceEEcCCcc--ccccccCCcccccc
Q 019929 232 PGAQKFYCPFKDCSAMLIDDGEE--VIQESECPNCRRLF 268 (334)
Q Consensus 232 ~~~~~~~CP~p~C~~~~~~~~~~--~~~~~~C~~C~~~f 268 (334)
+.....+|| .|+.++.+.... ....+.|+.|++..
T Consensus 20 ~~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 345567999 999998876432 34457888887753
No 105
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=63.99 E-value=3.6 Score=28.65 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred CccccCCCCceeeeccCCCceEee-cC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SV 333 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg 333 (334)
.+-.||.|+...+-..+...+.|+ ||
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAK 33 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTT
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCC
Confidence 346899999999988888999995 87
No 106
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=63.77 E-value=2.8 Score=32.30 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=17.5
Q ss_pred ccCCCCCCCceEEcCCccccccccCCccccccccccCc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQV 274 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 274 (334)
..|| -|...+... +.- .||+.||..|..
T Consensus 53 ~~C~--IC~~~~~~p-------~~~-~CgH~fC~~Ci~ 80 (124)
T 3fl2_A 53 FQCI--CCQELVFRP-------ITT-VCQHNVCKDCLD 80 (124)
T ss_dssp TBCT--TTSSBCSSE-------EEC-TTSCEEEHHHHH
T ss_pred CCCC--cCChHHcCc-------EEe-eCCCcccHHHHH
Confidence 4687 676544311 222 599999998854
No 107
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=59.35 E-value=3.5 Score=32.53 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=10.1
Q ss_pred ccccccccccCc
Q 019929 263 NCRRLFCAQCQV 274 (334)
Q Consensus 263 ~C~~~fC~~C~~ 274 (334)
.||+.||..|..
T Consensus 70 ~CgH~fc~~Ci~ 81 (138)
T 4ayc_A 70 NCAHSFCSYCIN 81 (138)
T ss_dssp TTSCEEEHHHHH
T ss_pred CCCCCccHHHHH
Confidence 499999999954
No 108
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=57.28 E-value=10 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=34.9
Q ss_pred ccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhhccCC
Q 019929 151 VCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCRDILP 215 (334)
Q Consensus 151 ~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ll~ 215 (334)
.||+|-..+...+.+.. ..+...|.+ ..+.||..+|...+....+...+.
T Consensus 55 ~CP~Cr~~~~~~~~~~~-------------~~l~~~i~~--l~v~C~n~gC~~~~~~~~l~~H~~ 104 (118)
T 3hct_A 55 KCPVDNEILLENQLFPD-------------NFAKREILS--LMVKCPNEGCLHKMELRHLEDHQA 104 (118)
T ss_dssp BCTTTCCBCCGGGCEEC-------------HHHHHHHHT--SEEECSSTTCCCEEEGGGSGGGTS
T ss_pred CCCCCCCCcCHHhcccC-------------HHHHHHHcc--ceeECCCCCCCCEEeeHHHHHHHH
Confidence 79999877765444433 234444443 578999999999999888877664
No 109
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=55.04 E-value=5.7 Score=33.03 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=19.9
Q ss_pred cccCCCCceeeeccCCCceEee-cCC
Q 019929 310 KRCPNCRYYVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 310 k~CP~C~~~IeK~~GCnhMtC~-Cg~ 334 (334)
-.|++|+.+..+.+ ++|.|+ ||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 58999999998876 999995 984
No 110
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.69 E-value=5.3 Score=27.33 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=20.1
Q ss_pred CCccccCCCCceeeeccCCCceEee-cCC
Q 019929 307 EKWKRCPNCRYYVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 307 ~~~k~CP~C~~~IeK~~GCnhMtC~-Cg~ 334 (334)
...-.|..|+..++...| .-|.|+ |||
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred CeEEECCCCCCeeecCCC-CceECCCCCc
Confidence 345688899888876655 668885 886
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=53.25 E-value=22 Score=28.37 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=26.8
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHHHH
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYV 183 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~ 183 (334)
....|.+|.+ ..+.+..-.|...||..|+..-+
T Consensus 62 ~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l 94 (142)
T 2lbm_A 62 MDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNL 94 (142)
T ss_dssp CBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHT
T ss_pred CCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCC
Confidence 3578999997 45666667899999999999765
No 112
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=52.69 E-value=9.3 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=18.2
Q ss_pred ccccCCCCc-eeeeccCCCceEee-cCC
Q 019929 309 WKRCPNCRY-YVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 309 ~k~CP~C~~-~IeK~~GCnhMtC~-Cg~ 334 (334)
...||.|+. .|....-=.-+.|. ||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 357999976 56655555568885 884
No 113
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.68 E-value=6.5 Score=30.10 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=22.2
Q ss_pred cccCCCCCCCceEEcCCc--cccccccCCcccccc
Q 019929 236 KFYCPFKDCSAMLIDDGE--EVIQESECPNCRRLF 268 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~~~--~~~~~~~C~~C~~~f 268 (334)
..+|| .|+.++.+... .....+.|+.|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46899 99998877643 234568888888754
No 114
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.49 E-value=5.4 Score=31.05 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=22.7
Q ss_pred CcccCCCCCCCceEEcCCc--cccccccCCcccccc
Q 019929 235 QKFYCPFKDCSAMLIDDGE--EVIQESECPNCRRLF 268 (334)
Q Consensus 235 ~~~~CP~p~C~~~~~~~~~--~~~~~~~C~~C~~~f 268 (334)
...+|| .|+.++.+... .....+.|+.|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 356999 99998876532 334568888888754
No 115
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=49.58 E-value=6.7 Score=31.50 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=10.0
Q ss_pred ccccccccccCc
Q 019929 263 NCRRLFCAQCQV 274 (334)
Q Consensus 263 ~C~~~fC~~C~~ 274 (334)
.|++.||..|..
T Consensus 95 ~CgH~fC~~Ci~ 106 (150)
T 1z6u_A 95 ECFHNVCKDCLQ 106 (150)
T ss_dssp TTSCEEEHHHHH
T ss_pred CCCCchhHHHHH
Confidence 699999998854
No 116
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.31 E-value=21 Score=25.48 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=26.4
Q ss_pred ccccccccccccccCCc-eeEecCCCCcccHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVKY 182 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~~ 182 (334)
.....|.+|...|.... ......||+.||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34678999998886432 2345689999999997653
No 117
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=48.16 E-value=10 Score=30.88 Aligned_cols=34 Identities=21% Similarity=0.620 Sum_probs=25.7
Q ss_pred ccccccccccccCCceeEec--CCCCcccHHHHHHHHHh
Q 019929 149 PFVCEICAEQKTVHKSFHIK--GCSHAYCTDCMVKYVAA 185 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~--~C~H~fC~~Cl~~~~~~ 185 (334)
..+|.||.+ ..+.+..- .|...||..|+...+-.
T Consensus 79 ~~yC~wC~~---Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCG---GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSC---CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecC---CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 678999987 34555443 58899999999987644
No 118
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=47.80 E-value=8.2 Score=28.54 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=35.0
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPE 208 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 208 (334)
...+.|-.|+-... ..+ .-..|++|..|+..++.. .-.|| -|+..|+-.
T Consensus 26 ~G~~nCKsCWf~~k--~LV--~C~dHYLCl~CLtlmL~~-------SdrCp--IC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLV--ECNNHYLCLNCLTLLLSV-------SNRCP--ICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS--SEE--ECSSCEEEHHHHHHTCSS-------SSEET--TTTEECCCC
T ss_pred cCcccChhhccccC--Cee--eecchhhHHHHHHHHHhh-------ccCCc--ccCCcCCcc
Confidence 46789999986543 322 246799999999887753 23799 598877754
No 119
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.70 E-value=22 Score=30.88 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=10.7
Q ss_pred hCCccccCCCCceee
Q 019929 306 KEKWKRCPNCRYYVE 320 (334)
Q Consensus 306 ~~~~k~CP~C~~~Ie 320 (334)
......||.|+....
T Consensus 214 ~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 214 SNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCSSCBCTTTCCBCC
T ss_pred hCCCCCCCCCCCCCC
Confidence 344569999998654
No 120
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.60 E-value=15 Score=26.78 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=26.5
Q ss_pred ccccccccccccccCCc-eeEecCCCCcccHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVKY 182 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~~ 182 (334)
.....|.+|...|.... ......||+.||..|....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 44578999998886432 2445689999999997653
No 121
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.49 E-value=6.1 Score=31.97 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=22.4
Q ss_pred ccCCCCCCCceEEcCCccccccccCCccccccccc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQ 271 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~ 271 (334)
..||++.|+..+..+. ...+..|..|+..++++
T Consensus 119 ~~c~~~~cg~g~fma~--h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 119 RECSNPTCGAGVFLAN--HKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp CBCCSTTSCSSSBEEE--CSSCEEESSSSSCCEEC
T ss_pred CcCCCccCCCceEecc--cCCCcccCCCceEEEec
Confidence 4899988986322221 12358999999988764
No 122
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.67 E-value=12 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.700 Sum_probs=19.0
Q ss_pred CccccCCCCceeeeccCCCceEee-cC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SV 333 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg 333 (334)
+...||.|+..++.++| +..|. |+
T Consensus 31 M~~~CP~Cq~eL~~~g~--~~hC~~C~ 55 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--HARCRSCG 55 (101)
T ss_dssp CCCBCSSSCSBEEEETT--EEEETTTC
T ss_pred ccccCccCCCcceecCC--EEECcccc
Confidence 34899999999999888 66674 64
No 123
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=44.62 E-value=5.3 Score=33.44 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=45.4
Q ss_pred cccccccccccCCc----eeEecCCCCcccHHHHHHHHH--hhhhC--CeeeeecCCCcCCCCCchhhhhccCChHHHHH
Q 019929 150 FVCEICAEQKTVHK----SFHIKGCSHAYCTDCMVKYVA--AKLEE--NITAIRCPVVDCRGLLEPEYCRDILPQDVFDR 221 (334)
Q Consensus 150 ~~C~IC~e~~~~~~----~~~~~~C~H~fC~~Cl~~~~~--~~i~~--~~~~i~CP~~~C~~~l~~~~i~~ll~~~~~~~ 221 (334)
..|+||...+...+ ++..-.|...|...|..---. ..+.+ ......|| .|...-+.. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 45999988776654 677778999998888853211 11111 11256899 687765543 444455555555
Q ss_pred HHHHHH
Q 019929 222 WGAALC 227 (334)
Q Consensus 222 y~~~~~ 227 (334)
+.+.+.
T Consensus 80 l~~vl~ 85 (183)
T 3lqh_A 80 LKQVLT 85 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 124
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=44.59 E-value=7.3 Score=31.66 Aligned_cols=20 Identities=40% Similarity=0.903 Sum_probs=15.5
Q ss_pred ccccCCCCceeeeccCCCceEee--cCC
Q 019929 309 WKRCPNCRYYVEKKDGCMYMKCR--SVF 334 (334)
Q Consensus 309 ~k~CP~C~~~IeK~~GCnhMtC~--Cg~ 334 (334)
.|.||+|.-.++ +|-|+ |||
T Consensus 110 ~k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 110 RKSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp HSBCSSSCCBEE------EECCCTBTTB
T ss_pred cCCCCCCCccee------eEeccCcCCC
Confidence 389999998775 67775 776
No 125
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=44.33 E-value=9.6 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=17.7
Q ss_pred ccCCCCce---eeeccCCCceEee-cCC
Q 019929 311 RCPNCRYY---VEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 311 ~CP~C~~~---IeK~~GCnhMtC~-Cg~ 334 (334)
.||.|+.+ +.+..+=-.+.|. ||+
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 48999873 5566677788886 884
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=43.96 E-value=15 Score=31.89 Aligned_cols=30 Identities=0% Similarity=-0.179 Sum_probs=18.7
Q ss_pred CcccCCCCCCCceEEcCCccccccccCCccccccccccCc
Q 019929 235 QKFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQV 274 (334)
Q Consensus 235 ~~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 274 (334)
..+.|| -|..++... +.= .||+.||..|..
T Consensus 207 ~~~~c~--i~~~~~~dP-------v~~-~~gh~f~~~~i~ 236 (281)
T 2c2l_A 207 DYLCGK--ISFELMREP-------CIT-PSGITYDRKDIE 236 (281)
T ss_dssp STTBCT--TTCSBCSSE-------EEC-SSCCEEETTHHH
T ss_pred cccCCc--CcCCHhcCC-------eEC-CCCCEECHHHHH
Confidence 345788 666554221 333 499999998854
No 127
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.57 E-value=11 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=22.7
Q ss_pred cccccccccccCCceeEecCCCCcccHHHH
Q 019929 150 FVCEICAEQKTVHKSFHIKGCSHAYCTDCM 179 (334)
Q Consensus 150 ~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl 179 (334)
..|--|...++....+....|++.||.+|=
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccchh
Confidence 348888887754444667789999999995
No 128
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=43.39 E-value=7 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.547 Sum_probs=21.7
Q ss_pred CcccCCCCCCCceEEcCCccccccccCCcccccccc
Q 019929 235 QKFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCA 270 (334)
Q Consensus 235 ~~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~ 270 (334)
....|| .|+........ ...+.|+.|+..|--
T Consensus 26 ~~y~Cp--~CG~~~v~r~a--tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQG--TGIWQCSYCDYKFTG 57 (83)
T ss_dssp SCEECS--SSCCEEEEEEE--TTEEEETTTCCEEEC
T ss_pred ccCcCC--CCCCcceeccC--CCeEECCCCCCEecC
Confidence 346899 89875554433 235899999987753
No 129
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=42.82 E-value=15 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.8
Q ss_pred ccccCCccccccccccCc-cCCCCCC
Q 019929 257 QESECPNCRRLFCAQCQV-PWHSGIN 281 (334)
Q Consensus 257 ~~~~C~~C~~~fC~~C~~-~~H~~~t 281 (334)
..++|..++..+|..|.. ..|.+++
T Consensus 13 l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 13 LKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp CCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 458999999999999987 6787764
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.76 E-value=15 Score=26.60 Aligned_cols=34 Identities=29% Similarity=0.604 Sum_probs=24.9
Q ss_pred cccccccccccccCCc-eeEecCCCCcccHHHHHH
Q 019929 148 GPFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVK 181 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~ 181 (334)
....|.+|...|.... ......||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4567999998886432 234568999999999754
No 131
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=40.83 E-value=7.1 Score=23.19 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=12.1
Q ss_pred ccccccccccccccCC
Q 019929 147 YGPFVCEICAEQKTVH 162 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~ 162 (334)
.+.|.||||+.++...
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3469999999877643
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.65 E-value=12 Score=27.87 Aligned_cols=17 Identities=18% Similarity=0.737 Sum_probs=14.3
Q ss_pred cccHHHHHHHHHhhhhC
Q 019929 173 AYCTDCMVKYVAAKLEE 189 (334)
Q Consensus 173 ~fC~~Cl~~~~~~~i~~ 189 (334)
-||++||..|+.....+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887654
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.29 E-value=11 Score=27.95 Aligned_cols=17 Identities=24% Similarity=0.843 Sum_probs=14.1
Q ss_pred cccHHHHHHHHHhhhhC
Q 019929 173 AYCTDCMVKYVAAKLEE 189 (334)
Q Consensus 173 ~fC~~Cl~~~~~~~i~~ 189 (334)
-||++||..|+.....+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999877653
No 134
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.65 E-value=15 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.608 Sum_probs=23.6
Q ss_pred cccccccccccCCc-eeEecCCCCcccHHHHHH
Q 019929 150 FVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVK 181 (334)
Q Consensus 150 ~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~ 181 (334)
..|.+|...|.... ......||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 47999998876432 234468999999999754
No 135
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.16 E-value=22 Score=24.60 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=25.7
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHH
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMV 180 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~ 180 (334)
.+...|.||........++..-.|...|...|+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 4567799998765544566667898889999985
No 136
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=39.15 E-value=15 Score=25.38 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.7
Q ss_pred ccccCCCCceeeeccCCCceEee-cC
Q 019929 309 WKRCPNCRYYVEKKDGCMYMKCR-SV 333 (334)
Q Consensus 309 ~k~CP~C~~~IeK~~GCnhMtC~-Cg 333 (334)
+-.||.|+...+-..+=..+.|+ ||
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDR 33 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTT
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCC
Confidence 35899999988876655678884 76
No 137
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=38.94 E-value=16 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.7
Q ss_pred CccccCCCCceeeeccCCCceEee-cC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SV 333 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg 333 (334)
..-.||.|+...+-..+=..+.|. ||
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADR 33 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTT
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCC
Confidence 346899999988876665678884 76
No 138
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.80 E-value=16 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.741 Sum_probs=25.0
Q ss_pred cccccccccccccCCc-eeEecCCCCcccHHHHHH
Q 019929 148 GPFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVK 181 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~ 181 (334)
+...|.+|...|.... ......||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3467999998886432 234568999999999864
No 139
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=38.05 E-value=24 Score=18.82 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.5
Q ss_pred CCccccccccccc
Q 019929 22 GSQPRRKLTDVAT 34 (334)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (334)
||-+||+-+|-..
T Consensus 1 gsmsrrrhsdend 13 (26)
T 3ul0_C 1 GSMSRRRHSDEND 13 (26)
T ss_dssp --CCCCCCTTSCS
T ss_pred CcccccccccccC
Confidence 4566666666543
No 140
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.80 E-value=21 Score=25.93 Aligned_cols=32 Identities=28% Similarity=0.839 Sum_probs=24.9
Q ss_pred ccCCCCCCCceEEcCCccccccccCCccccccccccCcc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVP 275 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 275 (334)
..|..++|..... ..+.|..|+..||..-+.+
T Consensus 26 ~~C~~~~Ck~~~~-------l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 26 YSCSFKGCTDVEL-------VAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp EECCSTTCCCEES-------SCEECTTTCCEECGGGCST
T ss_pred CCCCCcCCCCCCc-------cceECCCCCcccccccCCc
Confidence 4799889997632 2379999999999987654
No 141
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.36 E-value=11 Score=33.32 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=8.7
Q ss_pred CccccccccccCc
Q 019929 262 PNCRRLFCAQCQV 274 (334)
Q Consensus 262 ~~C~~~fC~~C~~ 274 (334)
..||+.||..|..
T Consensus 198 ~~CGHsFcR~cI~ 210 (267)
T 3htk_C 198 RKCNHVFDRDGIQ 210 (267)
T ss_dssp SSSCCEEEHHHHH
T ss_pred CCCCCcccHHHHH
Confidence 3578888876643
No 142
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.24 E-value=17 Score=23.15 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=19.6
Q ss_pred cCCCCCCCceEEcCCccccccccCCcccccc
Q 019929 238 YCPFKDCSAMLIDDGEEVIQESECPNCRRLF 268 (334)
Q Consensus 238 ~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~f 268 (334)
.|- .|+..+..++-...+.+.||.||+..
T Consensus 5 ~C~--rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCG--KCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCC--CTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred Eee--ccCCCccHHHHhhCCCcccCccCcEE
Confidence 355 67776666655566778888888653
No 143
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.15 E-value=17 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=18.5
Q ss_pred ccccCCCCceeeeccCCCceEee-cC
Q 019929 309 WKRCPNCRYYVEKKDGCMYMKCR-SV 333 (334)
Q Consensus 309 ~k~CP~C~~~IeK~~GCnhMtC~-Cg 333 (334)
.-.||.|+...+-..+=..+.|+ ||
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAG 33 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTT
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCC
Confidence 35899999988866555678884 76
No 144
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=36.84 E-value=12 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=17.0
Q ss_pred cccCCCCceeeeccCCCceEe-ecCC
Q 019929 310 KRCPNCRYYVEKKDGCMYMKC-RSVF 334 (334)
Q Consensus 310 k~CP~C~~~IeK~~GCnhMtC-~Cg~ 334 (334)
..||.|+...... +..+| .|||
T Consensus 17 ~lCrRCG~~sfH~---qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGSKAYHL---QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCSSCEET---TSCCBTTTCT
T ss_pred CcCCCCCCccCcC---ccccCcccCC
Confidence 5899999976644 46789 5997
No 145
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.66 E-value=19 Score=33.74 Aligned_cols=32 Identities=25% Similarity=0.669 Sum_probs=25.2
Q ss_pred ccccccccccccCCceeEec--CCCCcccHHHHHHHH
Q 019929 149 PFVCEICAEQKTVHKSFHIK--GCSHAYCTDCMVKYV 183 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 183 (334)
..+|.+|.+ ..+.+..- .|...||..|+...+
T Consensus 93 ~~yCr~C~~---Gg~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 93 QSYCSICCS---GETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp BCSCTTTCC---CSSCEECCSTTCCCEECHHHHHHHT
T ss_pred cccceEcCC---CCeEEEeCCCCCCcchHHHHHHHhc
Confidence 678888886 34555555 799999999999887
No 146
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.19 E-value=68 Score=27.86 Aligned_cols=20 Identities=0% Similarity=-0.139 Sum_probs=14.8
Q ss_pred hhhccCChHHHHHHHHHHHH
Q 019929 209 YCRDILPQDVFDRWGAALCE 228 (334)
Q Consensus 209 ~i~~ll~~~~~~~y~~~~~~ 228 (334)
.+..-++++++..|.+....
T Consensus 168 ~l~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHh
Confidence 34556788999999987653
No 147
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=35.53 E-value=35 Score=30.02 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=22.6
Q ss_pred CccccCCCCceeeeccCCCceEee-cCC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SVF 334 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg~ 334 (334)
..+.||.|+.+.+...+=..+.|. ||+
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCC
Confidence 459999999999887777888995 885
No 148
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.32 E-value=15 Score=24.97 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=24.1
Q ss_pred ccCCCCCCCceEEcCCccccccccCCccccccccccCcc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVP 275 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 275 (334)
..|..++|.... ...+.|..|+..||..-+.+
T Consensus 13 ~~Cs~~~Ck~~~-------ll~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 13 NKCERAGCRQRE-------MMKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCSTTCCCCC-------SSCCBCSSSCCBCCHHHHST
T ss_pred CCCCccCCCCCC-------ccceECCCCCcccCcccCCc
Confidence 489988898651 12379999999999977653
No 149
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=34.86 E-value=14 Score=24.91 Aligned_cols=15 Identities=40% Similarity=0.981 Sum_probs=11.1
Q ss_pred CCccccCCCCceeee
Q 019929 307 EKWKRCPNCRYYVEK 321 (334)
Q Consensus 307 ~~~k~CP~C~~~IeK 321 (334)
...+.||+|+++.-|
T Consensus 4 s~mr~C~~CgvYTLk 18 (60)
T 2apo_B 4 MRMKKCPKCGLYTLK 18 (60)
T ss_dssp CCCEECTTTCCEESS
T ss_pred hhceeCCCCCCEecc
Confidence 456889999887763
No 150
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.71 E-value=45 Score=23.36 Aligned_cols=60 Identities=20% Similarity=0.489 Sum_probs=39.2
Q ss_pred cccccccccccccc-CCceeEecCCCCcccHHHHHHHHHhhhhCCeeeeecCCCcCCCCCchhhhh
Q 019929 147 YGPFVCEICAEQKT-VHKSFHIKGCSHAYCTDCMVKYVAAKLEENITAIRCPVVDCRGLLEPEYCR 211 (334)
Q Consensus 147 ~~~~~C~IC~e~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 211 (334)
.....| ||-.... ...++....|...|...|+.--.... .......|| .|.....+..++
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~--~~~~~~~C~--~C~~~~~~~~~K 70 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCP--DCEAVFGPSIMK 70 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCT--TTTTTSCSCBCC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc--cCCCeEECC--CcccccCCCcee
Confidence 456778 8987664 34677777899999999986432221 122467899 687765554444
No 151
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=33.05 E-value=8.3 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=22.7
Q ss_pred cccccCCccccccccccCccCCCCCCch
Q 019929 256 IQESECPNCRRLFCAQCQVPWHSGINCV 283 (334)
Q Consensus 256 ~~~~~C~~C~~~fC~~C~~~~H~~~tC~ 283 (334)
...++|..|+..+|..|....|.++.-.
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~~~ 43 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQYQ 43 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCCEE
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCcee
Confidence 3458999999999999988788887543
No 152
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=32.57 E-value=26 Score=27.52 Aligned_cols=45 Identities=16% Similarity=0.586 Sum_probs=28.8
Q ss_pred eecCCCcCCC---CCchhhhhccCChHHHHHHHHHHHHhhcCCCCcccCCCCCCCceEEc
Q 019929 194 IRCPVVDCRG---LLEPEYCRDILPQDVFDRWGAALCEAVIPGAQKFYCPFKDCSAMLID 250 (334)
Q Consensus 194 i~CP~~~C~~---~l~~~~i~~ll~~~~~~~y~~~~~~~~~~~~~~~~CP~p~C~~~~~~ 250 (334)
..|| .|+. .+....++.+|.++.++ +...+..+|++|+|.-++..
T Consensus 2 ~~CP--~Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 2 MRCP--ECSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFN 49 (130)
T ss_dssp CBCT--TTCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEEC
T ss_pred CcCC--CCCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEEC
Confidence 3688 5754 55666677666554321 23345678999999976654
No 153
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=32.27 E-value=21 Score=24.88 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=9.2
Q ss_pred hCCccccCCCCceee
Q 019929 306 KEKWKRCPNCRYYVE 320 (334)
Q Consensus 306 ~~~~k~CP~C~~~Ie 320 (334)
...|+.|| |+..|+
T Consensus 18 ~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 18 GAKTRKCV-CGRTVN 31 (71)
T ss_dssp TCSEEEET-TTEEEE
T ss_pred CCcEEECC-CCCeee
Confidence 35567777 777664
No 154
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.08 E-value=25 Score=25.07 Aligned_cols=33 Identities=30% Similarity=0.705 Sum_probs=23.5
Q ss_pred cccCCCCCCCceEEcCCccccccccCCccccccccccCc
Q 019929 236 KFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQV 274 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 274 (334)
...|. .|...+.. ......|..||..||..|-.
T Consensus 14 ~~~C~--~C~~~F~~----~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCT--GCSATFSV----LKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCS--SSCCCCCS----SSCCEECSSSCCEECTTTSC
T ss_pred CCcCc--CcCCcccc----chhhhhhcCCCcEEChhhcC
Confidence 34677 67765422 23457899999999999965
No 155
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.85 E-value=15 Score=23.85 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=15.5
Q ss_pred hCCccccCCCCceeeeccCCCceEe-ecCC
Q 019929 306 KEKWKRCPNCRYYVEKKDGCMYMKC-RSVF 334 (334)
Q Consensus 306 ~~~~k~CP~C~~~IeK~~GCnhMtC-~Cg~ 334 (334)
...-+.||+|+..+ |=.--.| +|||
T Consensus 11 ~~~k~iCpkC~a~~----~~gaw~CrKCG~ 36 (51)
T 3j21_g 11 IFKKYVCLRCGATN----PWGAKKCRKCGY 36 (51)
T ss_dssp SSSEEECTTTCCEE----CTTCSSCSSSSS
T ss_pred HhCCccCCCCCCcC----CCCceecCCCCC
Confidence 34568999999872 2223345 3776
No 156
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=31.40 E-value=45 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.534 Sum_probs=26.7
Q ss_pred cccccccccccccCCceeEecCCCCcccHHHHHH-HHH
Q 019929 148 GPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVK-YVA 184 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~-~~~ 184 (334)
....|.+|-+..+.....+.+.|.-.||..|++. |..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPN 66 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCC
Confidence 3578999986432223455679999999999996 643
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.97 E-value=13 Score=34.90 Aligned_cols=38 Identities=16% Similarity=0.423 Sum_probs=0.0
Q ss_pred ccccccccccccccCCc-eeEecCCCCcccHHHHHHHHH
Q 019929 147 YGPFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVKYVA 184 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~~~~ 184 (334)
.....|.+|...|.... ......||+.||..|....+.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP 411 (434)
T ss_dssp ---------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeee
Confidence 34578999998775321 233458999999999987654
No 158
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=29.97 E-value=21 Score=33.51 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.8
Q ss_pred ccccCCCCceeee
Q 019929 309 WKRCPNCRYYVEK 321 (334)
Q Consensus 309 ~k~CP~C~~~IeK 321 (334)
...||-|+..|..
T Consensus 367 ~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 367 GQGCPFCRCEIKG 379 (389)
T ss_dssp CSBCTTTCCBCCE
T ss_pred CCCCCCCCCccCC
Confidence 4789999998865
No 159
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=29.88 E-value=17 Score=24.47 Aligned_cols=14 Identities=36% Similarity=1.025 Sum_probs=10.9
Q ss_pred CccccCCCCceeee
Q 019929 308 KWKRCPNCRYYVEK 321 (334)
Q Consensus 308 ~~k~CP~C~~~IeK 321 (334)
..+.||+|+++.-+
T Consensus 4 ~mr~C~~Cg~YTLk 17 (60)
T 2aus_D 4 RIRKCPKCGRYTLK 17 (60)
T ss_dssp CCEECTTTCCEESS
T ss_pred cceECCCCCCEEcc
Confidence 45889999987764
No 160
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.75 E-value=27 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=18.8
Q ss_pred CccccCCCCceeeeccCCCceEee-cC
Q 019929 308 KWKRCPNCRYYVEKKDGCMYMKCR-SV 333 (334)
Q Consensus 308 ~~k~CP~C~~~IeK~~GCnhMtC~-Cg 333 (334)
..-.||.|+..++-...=+.+.|. ||
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~ 35 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLN 35 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTT
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCC
Confidence 346899999988876554567774 65
No 161
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=29.46 E-value=25 Score=29.48 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=18.7
Q ss_pred CccccCCCCce-eeeccCCCceEe-ecCC
Q 019929 308 KWKRCPNCRYY-VEKKDGCMYMKC-RSVF 334 (334)
Q Consensus 308 ~~k~CP~C~~~-IeK~~GCnhMtC-~Cg~ 334 (334)
.-+.||+|+.. +.-...+.| +| +|||
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~-~CGkC~~ 139 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRH-YCGKCHL 139 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCE-EETTTCC
T ss_pred ccccCCccCCCccccCccCCC-ccCCcee
Confidence 34899999964 444666666 89 6886
No 162
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.89 E-value=25 Score=27.17 Aligned_cols=36 Identities=14% Similarity=0.373 Sum_probs=24.4
Q ss_pred cccccccccccccCC-ceeEecCCCCcccHHHHHHHH
Q 019929 148 GPFVCEICAEQKTVH-KSFHIKGCSHAYCTDCMVKYV 183 (334)
Q Consensus 148 ~~~~C~IC~e~~~~~-~~~~~~~C~H~fC~~Cl~~~~ 183 (334)
....|..|...|... .......||..||..|....+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 346799998887642 223456899999999987654
No 163
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.69 E-value=40 Score=26.03 Aligned_cols=34 Identities=24% Similarity=0.709 Sum_probs=24.6
Q ss_pred cccCCCCCCCceEEcCCccccccccCCccccccccccCcc
Q 019929 236 KFYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVP 275 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 275 (334)
...|. .|...+.. ......|..||..||..|...
T Consensus 69 ~~~C~--~C~~~Fs~----~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCM--ACGKGFSV----TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCT--TTCCBCCS----SSCCEECTTTCCEECGGGSCE
T ss_pred CCCCc--CcCCcccc----ccccccCCCCCeEEChHHhCC
Confidence 34787 78765432 234578999999999999763
No 164
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.55 E-value=81 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.659 Sum_probs=17.8
Q ss_pred cccCCCCCCCceEEcCCccccccc-cCCccccc
Q 019929 236 KFYCPFKDCSAMLIDDGEEVIQES-ECPNCRRL 267 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~~~~~~~~~-~C~~C~~~ 267 (334)
..+|. +|+..+.... ... .||.|+..
T Consensus 73 ~~~C~--~CG~~~e~~~----~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECK--DCSHVFKPNA----LDYGVCEKCHSK 99 (119)
T ss_dssp EEECS--SSSCEECSCC----STTCCCSSSSSC
T ss_pred eEEcC--CCCCEEeCCC----CCCCcCccccCC
Confidence 45899 9998776532 235 78888753
No 165
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.28 E-value=33 Score=22.58 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=18.3
Q ss_pred ccccCCCCceeeeccCCCceEee---cC
Q 019929 309 WKRCPNCRYYVEKKDGCMYMKCR---SV 333 (334)
Q Consensus 309 ~k~CP~C~~~IeK~~GCnhMtC~---Cg 333 (334)
.-.||.|+...+-.. ..+.|. ||
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~ 35 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCG 35 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCC
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCC
Confidence 458999999887766 678886 76
No 166
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.10 E-value=23 Score=30.17 Aligned_cols=34 Identities=26% Similarity=0.674 Sum_probs=25.4
Q ss_pred ccccccccccccCCc-eeEecCCCCcccHHHHHHH
Q 019929 149 PFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVKY 182 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~~ 182 (334)
...|.+|...|.... ......||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 468999998876432 2445689999999997654
No 167
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.30 E-value=26 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.773 Sum_probs=12.5
Q ss_pred cCCCCCCCceEEcCCccccccccCCccccc
Q 019929 238 YCPFKDCSAMLIDDGEEVIQESECPNCRRL 267 (334)
Q Consensus 238 ~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~ 267 (334)
.|- +|++.+ .. .......||.|+..
T Consensus 69 ~C~--~CG~~F-~~--~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCR--KCGFVF-KA--EINIPSRCPKCKSE 93 (105)
T ss_dssp BBT--TTCCBC-CC--CSSCCSSCSSSCCC
T ss_pred Chh--hCcCee-cc--cCCCCCCCcCCCCC
Confidence 565 777665 11 11223567766543
No 168
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=26.19 E-value=68 Score=25.04 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=25.4
Q ss_pred ccccccccccccCCceeEecCCCCcccHHHHHHHH
Q 019929 149 PFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYV 183 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~ 183 (334)
...|.||.+ ..+.+..-.|...||..|+...+
T Consensus 57 ~~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 57 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp BSSCTTTCC---CSEEEECSSSSCEEEHHHHHHHT
T ss_pred CCcCeecCC---CCeeEecCCCchhhhHHHhCCCc
Confidence 567999987 45666566899999999999763
No 169
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=25.76 E-value=17 Score=23.25 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.9
Q ss_pred cccccCCccccccccccCc-cCCCCCCc
Q 019929 256 IQESECPNCRRLFCAQCQV-PWHSGINC 282 (334)
Q Consensus 256 ~~~~~C~~C~~~fC~~C~~-~~H~~~tC 282 (334)
...++|..|+..+|..|.. ..|.+++-
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 3458999999999999987 67887753
No 170
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.74 E-value=24 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=18.5
Q ss_pred ccccCCCCce------eeeccCCCceEee-cC
Q 019929 309 WKRCPNCRYY------VEKKDGCMYMKCR-SV 333 (334)
Q Consensus 309 ~k~CP~C~~~------IeK~~GCnhMtC~-Cg 333 (334)
.-.||.|+.. |.|..|=-+++|+ ||
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg 54 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCL 54 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCC
Confidence 3589999875 4456777888895 87
No 171
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.71 E-value=77 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.308 Sum_probs=32.2
Q ss_pred cccccccccccc------cCCceeEecCCCCcccHHHHHH--HHHhhhhCCeeeeecCC
Q 019929 148 GPFVCEICAEQK------TVHKSFHIKGCSHAYCTDCMVK--YVAAKLEENITAIRCPV 198 (334)
Q Consensus 148 ~~~~C~IC~e~~------~~~~~~~~~~C~H~fC~~Cl~~--~~~~~i~~~~~~i~CP~ 198 (334)
+...|.+|...- ...+++....|+..|...|+.. -+...+..+ .-.||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~--~W~C~~ 60 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL--RWQCIE 60 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS--CCCCTT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc--cccccc
Confidence 456799998752 2335666778999999999952 233344444 346884
No 172
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.63 E-value=26 Score=30.11 Aligned_cols=34 Identities=29% Similarity=0.686 Sum_probs=25.6
Q ss_pred ccccccccccccCCc-eeEecCCCCcccHHHHHHH
Q 019929 149 PFVCEICAEQKTVHK-SFHIKGCSHAYCTDCMVKY 182 (334)
Q Consensus 149 ~~~C~IC~e~~~~~~-~~~~~~C~H~fC~~Cl~~~ 182 (334)
...|.+|...|.... ......||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 458999998886432 2445689999999998654
No 173
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.56 E-value=1.1e+02 Score=21.09 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=25.2
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHH
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMV 180 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~ 180 (334)
.....| ||........++..-.|...|...|+.
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 346778 898876655677777899889999985
No 174
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.81 E-value=36 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.7
Q ss_pred cccccccccccccc-CCceeEecCCCCcccHHHHH
Q 019929 147 YGPFVCEICAEQKT-VHKSFHIKGCSHAYCTDCMV 180 (334)
Q Consensus 147 ~~~~~C~IC~e~~~-~~~~~~~~~C~H~fC~~Cl~ 180 (334)
.+...|+||...+. ...++..-.|...|...|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 45678999988764 34566667788888888874
No 175
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=24.15 E-value=16 Score=25.16 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.1
Q ss_pred cccccCCccccccccccCccCCCCCCchhHH
Q 019929 256 IQESECPNCRRLFCAQCQVPWHSGINCVEFQ 286 (334)
Q Consensus 256 ~~~~~C~~C~~~fC~~C~~~~H~~~tC~~~~ 286 (334)
...++|..|+..+|..|....|.+++-..+.
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l~ 57 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHSTVTVE 57 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCEEEHH
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCEecHH
Confidence 3458999999999999988889988765543
No 176
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=23.48 E-value=15 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=20.4
Q ss_pred ccccCCccccccccccC-ccCCCCCC
Q 019929 257 QESECPNCRRLFCAQCQ-VPWHSGIN 281 (334)
Q Consensus 257 ~~~~C~~C~~~fC~~C~-~~~H~~~t 281 (334)
..++|..|+..+|..|. ...|.+++
T Consensus 17 l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 17 INIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp CCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccEEcCCCCeeEcccccCCCcCCCCc
Confidence 45899999999999997 45788765
No 177
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=23.44 E-value=29 Score=31.89 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=10.3
Q ss_pred cccCCCCceeee
Q 019929 310 KRCPNCRYYVEK 321 (334)
Q Consensus 310 k~CP~C~~~IeK 321 (334)
..||-|+..|.+
T Consensus 327 ~~CP~CR~~i~~ 338 (345)
T 3t6p_A 327 RKCPICRGIIKG 338 (345)
T ss_dssp SBCTTTCCBCCE
T ss_pred CcCCCCCCCccC
Confidence 689999998875
No 178
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.36 E-value=52 Score=22.04 Aligned_cols=27 Identities=30% Similarity=0.739 Sum_probs=18.3
Q ss_pred cCCCCcccCCCCCCCceEEcCCccccccccCCcccc
Q 019929 231 IPGAQKFYCPFKDCSAMLIDDGEEVIQESECPNCRR 266 (334)
Q Consensus 231 ~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~ 266 (334)
+..+.+..|| .|+....+ ...|+.||+
T Consensus 25 l~~p~l~~c~--~cGe~~~~-------H~vc~~CG~ 51 (60)
T 3v2d_5 25 LTPPTLVPCP--ECKAMKPP-------HTVCPECGY 51 (60)
T ss_dssp CCCCCCEECT--TTCCEECT-------TSCCTTTCE
T ss_pred ccCCceeECC--CCCCeecc-------eEEcCCCCc
Confidence 3455677898 78876443 366888875
No 179
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=23.36 E-value=31 Score=27.79 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=17.9
Q ss_pred cccCCCCCC-C------ceEEc-CCccccccccCCcccccc
Q 019929 236 KFYCPFKDC-S------AMLID-DGEEVIQESECPNCRRLF 268 (334)
Q Consensus 236 ~~~CP~p~C-~------~~~~~-~~~~~~~~~~C~~C~~~f 268 (334)
.+.||||+| . ..+.. +... ....+|..|...|
T Consensus 105 v~~C~Np~CITn~E~v~s~F~v~~~~~-~~~lrC~YCe~~~ 144 (153)
T 2be7_D 105 VFPCPNSNCITHGEPVTSSFSIKKTKG-NIGLKCKYCEKTF 144 (153)
T ss_dssp SSCCSCTTCTTSSSSCCCCEEEEEETT-EEEEEETTTCCEE
T ss_pred eEEcCCCCCCcCCcccccEEEEeecCC-CCEEEeeCCCCEe
Confidence 468999999 3 11222 2110 2237888787654
No 180
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=22.56 E-value=17 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=22.5
Q ss_pred ccccCCccccccccccCc-cCCCCCCch
Q 019929 257 QESECPNCRRLFCAQCQV-PWHSGINCV 283 (334)
Q Consensus 257 ~~~~C~~C~~~fC~~C~~-~~H~~~tC~ 283 (334)
..++|..|+..+|..|.. ..|.++.-.
T Consensus 29 l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 56 (84)
T 2dja_A 29 VNMYCVSDDQLICALCKLVGRHRDHQVA 56 (84)
T ss_dssp CCEEETTTTEEECHHHHHTSTTTTCCBC
T ss_pred ccEEcCCCCceEcccCcCCCCCCCCCcc
Confidence 458999999999999987 688887554
No 181
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.46 E-value=48 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred ccCCCCCCCceEEcCCccccccccCCcccccccccc
Q 019929 237 FYCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQC 272 (334)
Q Consensus 237 ~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C 272 (334)
+.|| +|...-..-. .....+.|..|+...|.-=
T Consensus 8 VKCp--~C~niq~VFS-hA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFD-HPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp EECT--TTCCEEEEES-SCSSCEECSSSCCEEEECC
T ss_pred EECC--CCCCceEEEe-cCceEEEcccCCCEEeecC
Confidence 4799 9987532211 1234589999999988543
No 182
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.36 E-value=63 Score=21.61 Aligned_cols=28 Identities=25% Similarity=0.688 Sum_probs=18.6
Q ss_pred cCCCCcccCCCCCCCceEEcCCccccccccCCccccc
Q 019929 231 IPGAQKFYCPFKDCSAMLIDDGEEVIQESECPNCRRL 267 (334)
Q Consensus 231 ~~~~~~~~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~ 267 (334)
+....+..|| .|+.... +...|+.||+.
T Consensus 25 l~~p~l~~c~--~cG~~~~-------pH~vc~~CG~Y 52 (60)
T 2zjr_Z 25 LTAPNLTECP--QCHGKKL-------SHHICPNCGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEEC-------TTBCCTTTCBS
T ss_pred ccCCCceECC--CCCCEeC-------CceEcCCCCcC
Confidence 3455667898 7887643 33678888753
No 183
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.35 E-value=80 Score=21.59 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=27.6
Q ss_pred ccccccccccccccCCceeEecCCCCcccHHHHHHHHHh
Q 019929 147 YGPFVCEICAEQKTVHKSFHIKGCSHAYCTDCMVKYVAA 185 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~~~~~~~~C~H~fC~~Cl~~~~~~ 185 (334)
..-|.|..|-..+.....+.+..=+..||..|....+..
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 346889999888754444543356788999999876643
No 184
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.34 E-value=21 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=21.9
Q ss_pred cccccCCccccccccccCc-cCCCCCCc
Q 019929 256 IQESECPNCRRLFCAQCQV-PWHSGINC 282 (334)
Q Consensus 256 ~~~~~C~~C~~~fC~~C~~-~~H~~~tC 282 (334)
...++|..++..+|..|.. ..|.+++-
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~~ 50 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHHT 50 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCCE
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCcE
Confidence 3458899999999999987 68887753
No 185
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=21.91 E-value=22 Score=23.59 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=22.2
Q ss_pred cccccCCccccccccccCc-cCCCCCCch
Q 019929 256 IQESECPNCRRLFCAQCQV-PWHSGINCV 283 (334)
Q Consensus 256 ~~~~~C~~C~~~fC~~C~~-~~H~~~tC~ 283 (334)
...++|..|+..+|..|.. ..|.++.-.
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 46 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEVA 46 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCEE
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCee
Confidence 3458999999999999976 478877543
No 186
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.10 E-value=35 Score=30.05 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=17.1
Q ss_pred cccCCCCceeee--ccCCCceEee-c
Q 019929 310 KRCPNCRYYVEK--KDGCMYMKCR-S 332 (334)
Q Consensus 310 k~CP~C~~~IeK--~~GCnhMtC~-C 332 (334)
++||.|+.+|++ .+|=+-..|+ |
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~C 261 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTC 261 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCC
Confidence 799999999997 4565555563 5
No 187
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=21.00 E-value=37 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.429 Sum_probs=17.9
Q ss_pred cccCCCCCC-C------ceEEc-CCccccccccCCcccccc
Q 019929 236 KFYCPFKDC-S------AMLID-DGEEVIQESECPNCRRLF 268 (334)
Q Consensus 236 ~~~CP~p~C-~------~~~~~-~~~~~~~~~~C~~C~~~f 268 (334)
.+.||||+| . ..+.. +.. ....+|..|...|
T Consensus 105 vl~C~Np~CITn~E~v~s~F~v~~~~--~~~lrC~YCe~~~ 143 (149)
T 2yww_A 105 TLKCTNPNCITNKEKVRGKFKIESKN--PLKIRCYYCEKFL 143 (149)
T ss_dssp SSCCSCTTSGGGTSCCCCEEEEEEET--TEEEEETTTCCBC
T ss_pred eEEcCCCCCCcCCcccccEEEEEeCC--CCEEEeeCCCcCh
Confidence 358999999 3 22222 211 2237888887654
No 188
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.82 E-value=31 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=17.6
Q ss_pred cccCCCCceeee--ccCCCceEee-cC
Q 019929 310 KRCPNCRYYVEK--KDGCMYMKCR-SV 333 (334)
Q Consensus 310 k~CP~C~~~IeK--~~GCnhMtC~-Cg 333 (334)
++||.|+.+|++ .+|=.-..|+ |.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999997 5565555563 53
No 189
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.63 E-value=38 Score=28.75 Aligned_cols=32 Identities=28% Similarity=0.795 Sum_probs=22.7
Q ss_pred cCCCCCCCceEEcCCccccccccCCccccccccccCcc
Q 019929 238 YCPFKDCSAMLIDDGEEVIQESECPNCRRLFCAQCQVP 275 (334)
Q Consensus 238 ~CP~p~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 275 (334)
.|+ .|...+.. ..+...|..||..||..|-..
T Consensus 163 ~C~--~C~~~F~~----~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 163 VCH--RCRVEFTF----TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp BCT--TTCCBCCS----SSCCEECTTTCCEECSTTSCE
T ss_pred ccC--CCCCccCC----cccccccCCcCCEEChHHhCC
Confidence 566 67654432 234578999999999999763
No 190
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.59 E-value=31 Score=30.53 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=17.8
Q ss_pred cccCCCCceeee--ccCCCceEee-cC
Q 019929 310 KRCPNCRYYVEK--KDGCMYMKCR-SV 333 (334)
Q Consensus 310 k~CP~C~~~IeK--~~GCnhMtC~-Cg 333 (334)
++||.|+.+|+| .+|=+-..|+ |.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 799999999997 5565555563 53
No 191
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.50 E-value=83 Score=24.70 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.6
Q ss_pred cccCCCCCCCceEEcC
Q 019929 236 KFYCPFKDCSAMLIDD 251 (334)
Q Consensus 236 ~~~CP~p~C~~~~~~~ 251 (334)
..+|. +|++.+...
T Consensus 70 ~~~C~--~CG~~~~~~ 83 (139)
T 3a43_A 70 VFKCR--NCNYEWKLK 83 (139)
T ss_dssp EEEET--TTCCEEEGG
T ss_pred cEECC--CCCCEEecc
Confidence 45899 999887654
No 192
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=20.30 E-value=79 Score=21.31 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=24.2
Q ss_pred ccccccccccccccCC-ceeEec-CCCCcccHHHHH
Q 019929 147 YGPFVCEICAEQKTVH-KSFHIK-GCSHAYCTDCMV 180 (334)
Q Consensus 147 ~~~~~C~IC~e~~~~~-~~~~~~-~C~H~fC~~Cl~ 180 (334)
.+...|++|...+... .++..- .|.-.|...|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4467899999886543 455666 799899999985
No 193
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=20.14 E-value=52 Score=17.74 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.1
Q ss_pred ccccccCccCCCCCCchh
Q 019929 267 LFCAQCQVPWHSGINCVE 284 (334)
Q Consensus 267 ~fC~~C~~~~H~~~tC~~ 284 (334)
..|++|+..-|....|..
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 468999999999888875
Done!