BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019930
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
           Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
           K777
 pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
           Major Cathepsin L Protease From T. Brucei Rhodesiense,
           Bound To Inhibitor K11002
          Length = 215

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 145 PLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSL 192
           P D DAIA  +    P +    A +F +Y  GILT  T+   D G+ L
Sbjct: 119 PQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLL 166


>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
 pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
           Methionine
 pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
           Aminopeptidase Complexed With L-Leucine
 pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
           Aminopeptidase Complexed With L-Phenylalanine
 pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
           Tryptophan
 pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
           P-Iodo-L- Phenylalanine
 pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
           Tryptophan
 pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
           Phenylalanine
 pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
           Methionine
 pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
           P-Iodo-D- Phenylalanine
          Length = 284

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 170 FQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQT-PFAGSAPVG 228
           F+NY AG+   +   TE  G S H  F++ G+  G     A +T SA Q   + G+A   
Sbjct: 182 FKNYFAGLNVPTEIETEGDGRSDHAPFKNVGVPVGGLFTGAGYTKSAAQAQKWGGTAGQA 241

Query: 229 FDSSFQ 234
           FD  + 
Sbjct: 242 FDRCYH 247


>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
          Length = 284

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 170 FQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQT-PFAGSAPVG 228
           F+NY AG+   +   TE  G S H  F++ G+  G     A +T SA Q   + G+A   
Sbjct: 182 FKNYFAGLNVPTEIETEGDGRSDHAPFKNVGVPVGGLFTGAGYTKSAAQAQKWGGTAGQA 241

Query: 229 FDSSFQ 234
           FD  + 
Sbjct: 242 FDRCYH 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,308,476
Number of Sequences: 62578
Number of extensions: 342037
Number of successful extensions: 541
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 11
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)