Query 019930
Match_columns 334
No_of_seqs 137 out of 356
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vg5_A RSGI RUH-014, rhomboid 47.3 4.7 0.00016 31.0 0.4 36 26-63 8-43 (73)
2 2o6n_A RH4B designed peptide; 24.9 38 0.0013 22.8 1.9 18 64-81 7-24 (35)
3 1ify_A HHR23A, UV excision rep 22.8 42 0.0014 23.3 1.9 24 49-73 9-45 (49)
4 1uxc_A FRUR (1-57), fructose r 16.9 67 0.0023 23.3 2.0 21 42-62 28-48 (65)
5 2ay0_A Bifunctional PUTA prote 16.5 1.8E+02 0.0063 20.7 4.2 36 41-81 7-42 (58)
6 2ysr_A DEP domain-containing p 14.4 46 0.0016 26.6 0.6 12 63-74 42-53 (105)
7 3t5v_A Nuclear mRNA export pro 13.6 47 0.0016 31.3 0.5 20 54-73 229-248 (316)
8 3vea_B MATP, macrodomain TER p 13.5 92 0.0031 27.2 2.3 49 25-78 78-129 (151)
9 1v54_E Cytochrome C oxidase po 13.1 2.3E+02 0.008 23.5 4.5 36 46-83 61-97 (109)
10 1irz_A ARR10-B; helix-turn-hel 12.0 1.9E+02 0.0065 21.7 3.3 28 37-64 3-30 (64)
No 1
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.31 E-value=4.7 Score=31.01 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCccccccCCCCCcceeecCHHHHHHHhhhhhhhCCCC
Q 019930 26 DRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDR 63 (334)
Q Consensus 26 DRHsKv~ta~g~RdRRvRls~~~A~~ff~lqd~LG~dk 63 (334)
-||+-|..|.|+=-+ .+....+..++=.|.+| ||++
T Consensus 8 ~r~~~~~~a~~~~~~-~~~~~~~ee~I~~L~eM-GF~r 43 (73)
T 1vg5_A 8 SRQAPIANAAVLPQS-QGRVAASEEQIQKLVAM-GFDR 43 (73)
T ss_dssp CCCCCCSCCCCCSSS-CCCSCCCHHHHHHHHTT-TCCH
T ss_pred ccccccccCCCCCCC-ccCCcccHHHHHHHHHc-CCCH
Confidence 477778887776544 46666667777888875 9965
No 2
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=24.89 E-value=38 Score=22.83 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=14.9
Q ss_pred CCchHHHHHHhcHHHHHH
Q 019930 64 PSKAVDWLIKKAKSSIDK 81 (334)
Q Consensus 64 ~skTv~WLL~~ak~aI~~ 81 (334)
+-|-|.||+++||..|-+
T Consensus 7 akkeiaylikkakeeile 24 (35)
T 2o6n_A 7 AKKEIAYLIKKAKEEILE 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999999998865
No 3
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.83 E-value=42 Score=23.33 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=13.3
Q ss_pred HHHHhhhhhhhCCCC-------------CCchHHHHHH
Q 019930 49 AIQFYDVQDRLGYDR-------------PSKAVDWLIK 73 (334)
Q Consensus 49 A~~ff~lqd~LG~dk-------------~skTv~WLL~ 73 (334)
..++=.|.+| ||++ ..++|+||+.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3445556655 6754 3456666664
No 4
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=16.91 E-value=67 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.1
Q ss_pred eecCHHHHHHHhhhhhhhCCC
Q 019930 42 VRLSAHTAIQFYDVQDRLGYD 62 (334)
Q Consensus 42 vRls~~~A~~ff~lqd~LG~d 62 (334)
.+++.+++.++..+-++|||.
T Consensus 28 ~~vs~et~~rI~~aa~~lgY~ 48 (65)
T 1uxc_A 28 YRVSDKTVEKVMAVVREHNYH 48 (65)
T ss_dssp TTCTTHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhCCC
Confidence 468999999999999999994
No 5
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=16.47 E-value=1.8e+02 Score=20.66 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=28.9
Q ss_pred eeecCHHHHHHHhhhhhhhCCCCCCchHHHHHHhcHHHHHH
Q 019930 41 RVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDK 81 (334)
Q Consensus 41 RvRls~~~A~~ff~lqd~LG~dk~skTv~WLL~~ak~aI~~ 81 (334)
-|||+.+...++=.|.+.+|- +.-||++.|-.+..+
T Consensus 7 svrL~~el~~rL~~lA~~~~r-----s~s~lireAi~~yl~ 42 (58)
T 2ay0_A 7 GVMLDDATRERIKSAATRIDR-----TPHWLIKQAIFSYLE 42 (58)
T ss_dssp EEEECHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred EeECCHHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHH
Confidence 489999999999999999986 568998775544433
No 6
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.38 E-value=46 Score=26.57 Aligned_cols=12 Identities=42% Similarity=0.781 Sum_probs=10.3
Q ss_pred CCCchHHHHHHh
Q 019930 63 RPSKAVDWLIKK 74 (334)
Q Consensus 63 k~skTv~WLL~~ 74 (334)
..+++||||++.
T Consensus 42 ~GsE~VdWL~~~ 53 (105)
T 2ysr_A 42 TAGEAVDWLYDL 53 (105)
T ss_dssp EHHHHHHHHHHH
T ss_pred cchHHHHHHHHh
Confidence 468999999987
No 7
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=13.60 E-value=47 Score=31.26 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=17.8
Q ss_pred hhhhhhCCCCCCchHHHHHH
Q 019930 54 DVQDRLGYDRPSKAVDWLIK 73 (334)
Q Consensus 54 ~lqd~LG~dk~skTv~WLL~ 73 (334)
.|+++||||...++++|+-.
T Consensus 229 ~L~~~L~Fds~ee~~~F~~~ 248 (316)
T 3t5v_A 229 YLENMLLFNNRQEIIEFCNY 248 (316)
T ss_dssp HHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 58999999999999999844
No 8
>3vea_B MATP, macrodomain TER protein; macrodomains, chromosome, DNA condensation; 2.55A {Yersinia pestis} PDB: 3veb_B 4d8j_B
Probab=13.55 E-value=92 Score=27.23 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=42.8
Q ss_pred CCCc---cccccCCCCCcceeecCHHHHHHHhhhhhhhCCCCCCchHHHHHHhcHHH
Q 019930 25 KDRH---SKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSS 78 (334)
Q Consensus 25 kDRH---sKv~ta~g~RdRRvRls~~~A~~ff~lqd~LG~dk~skTv~WLL~~ak~a 78 (334)
|-|| -|+|| |-.-|=|.-.+=.++-.+..++|. +=|+||.+||.-|+.-
T Consensus 78 RKRhFNAE~qhT----rKKSIDLey~vW~rLs~~a~~~~~-TLSetI~~li~eae~k 129 (151)
T 3vea_B 78 RKRHFNAEHQHT----RKKSIDLEFLVWQRLAVLARRRGN-TLSDTVVQLIEDAERK 129 (151)
T ss_dssp HHHHHHTTSGGG----CEEEEEEEHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred HHccCCcccccc----ccCcccchHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 4455 47889 889999999999999999999999 8999999999987653
No 9
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=13.10 E-value=2.3e+02 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.459 Sum_probs=29.8
Q ss_pred HHHHHHHhh-hhhhhCCCCCCchHHHHHHhcHHHHHHHh
Q 019930 46 AHTAIQFYD-VQDRLGYDRPSKAVDWLIKKAKSSIDKLA 83 (334)
Q Consensus 46 ~~~A~~ff~-lqd~LG~dk~skTv~WLL~~ak~aI~~l~ 83 (334)
..+|.|||. +.+..|-+ .+.-.|+|+.-|+-++||-
T Consensus 61 ~alAVR~lE~iK~K~~~~--~~iY~~~lqElkPtl~ELG 97 (109)
T 1v54_E 61 FASAVRILEVVKDKAGPH--KEIYPYVIQELRPTLNELG 97 (109)
T ss_dssp HHHHHHHHHHHHHHTTTC--TTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCc--hhhHHHHHHHHhhHHHHhC
Confidence 678999997 56677664 4579999999999999994
No 10
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=12.02 E-value=1.9e+02 Score=21.69 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCcceeecCHHHHHHHhhhhhhhCCCCC
Q 019930 37 PRDRRVRLSAHTAIQFYDVQDRLGYDRP 64 (334)
Q Consensus 37 ~RdRRvRls~~~A~~ff~lqd~LG~dk~ 64 (334)
.|-.|+|-+.+.-.+|-+.-..||.|++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~A 30 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERA 30 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCC
Confidence 5778999999999999999999998754
Done!