Query 019930
Match_columns 334
No_of_seqs 137 out of 356
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 09:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 51.9 3.3 0.00024 28.9 1.9 16 69-84 4-20 (53)
2 d1rpna_ c.2.1.2 (A:) GDP-manno 24.0 18 0.0013 29.1 2.4 22 55-77 291-320 (321)
3 d1zata1 b.160.1.1 (A:339-466) 17.9 26 0.0019 25.0 1.8 17 40-56 103-119 (128)
4 d1y7ma1 b.160.1.1 (A:49-164) H 16.9 30 0.0021 25.0 2.0 18 40-57 90-107 (116)
5 d1n7ha_ c.2.1.2 (A:) GDP-manno 16.8 32 0.0023 27.7 2.4 22 55-77 301-330 (339)
6 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 16.7 42 0.003 27.6 3.1 30 55-84 296-335 (346)
7 d1weoa_ g.44.1.1 (A:) Cellulos 16.0 31 0.0022 26.2 1.9 18 309-326 74-92 (93)
8 d1qpza1 a.35.1.5 (A:2-58) Puri 15.2 79 0.0058 21.2 3.8 25 43-68 26-50 (57)
9 d1irza_ a.4.1.11 (A:) Arr10-B 13.6 86 0.0063 21.7 3.7 30 36-65 2-31 (64)
10 d1wgna_ a.5.2.1 (A:) Ubiquitin 13.0 16 0.0012 25.3 -0.5 13 64-76 47-59 (63)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=51.85 E-value=3.3 Score=28.86 Aligned_cols=16 Identities=44% Similarity=0.891 Sum_probs=13.0
Q ss_pred HHHHHhcH-HHHHHHhc
Q 019930 69 DWLIKKAK-SSIDKLAE 84 (334)
Q Consensus 69 ~WLL~~ak-~aI~~l~~ 84 (334)
+|||++|| .||.||-.
T Consensus 4 ~~~Lk~AKe~AI~eLK~ 20 (53)
T d2j5ya1 4 QWLLKNAKEDAIAELKK 20 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 69999997 57888864
No 2
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.02 E-value=18 Score=29.15 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.7
Q ss_pred hhhhhCCCCCC--------chHHHHHHhcHH
Q 019930 55 VQDRLGYDRPS--------KAVDWLIKKAKS 77 (334)
Q Consensus 55 lqd~LG~dk~s--------kTv~WLL~~ak~ 77 (334)
+...||| +|. +||+|-|+++|.
T Consensus 291 ~~k~lG~-~P~~~l~e~i~~tv~~~l~~~~~ 320 (321)
T d1rpna_ 291 AQRVLGW-KPRTSLDELIRMMVEADLRRVSR 320 (321)
T ss_dssp HHHHHCC-CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CcCCCHHHHHHHHHHHHHHHhcC
Confidence 4566899 443 789998887663
No 3
>d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal, catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=17.91 E-value=26 Score=25.00 Aligned_cols=17 Identities=0% Similarity=0.112 Sum_probs=15.2
Q ss_pred ceeecCHHHHHHHhhhh
Q 019930 40 RRVRLSAHTAIQFYDVQ 56 (334)
Q Consensus 40 RRvRls~~~A~~ff~lq 56 (334)
-+|||+.+-|.+||++-
T Consensus 103 GCIRl~~~da~~ly~~v 119 (128)
T d1zata1 103 GCINTPPSVMKELFGMV 119 (128)
T ss_dssp SSEEECHHHHHHHHHHC
T ss_pred cccCcCHHHHHHHHhcC
Confidence 58999999999999864
No 4
>d1y7ma1 b.160.1.1 (A:49-164) Hypothetical protein YkuD, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=16.87 E-value=30 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=15.7
Q ss_pred ceeecCHHHHHHHhhhhh
Q 019930 40 RRVRLSAHTAIQFYDVQD 57 (334)
Q Consensus 40 RRvRls~~~A~~ff~lqd 57 (334)
-+|||+.+-|++||+.-+
T Consensus 90 GCIrl~~~da~~ly~~~~ 107 (116)
T d1y7ma1 90 GCIRMHNKDVIELASIVP 107 (116)
T ss_dssp SCEECCHHHHHHHHHHCC
T ss_pred CeeccCHHHHHHHHhcCC
Confidence 489999999999999754
No 5
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.84 E-value=32 Score=27.74 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.3
Q ss_pred hhhhhCCCCC--------CchHHHHHHhcHH
Q 019930 55 VQDRLGYDRP--------SKAVDWLIKKAKS 77 (334)
Q Consensus 55 lqd~LG~dk~--------skTv~WLL~~ak~ 77 (334)
+.++||| +| -+||+|-|+.+|.
T Consensus 301 ak~~LGw-~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 301 AKEVLGW-KPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp HHHHHCC-CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CcCCCHHHHHHHHHHHHHHHHhh
Confidence 4677898 44 3699999987664
No 6
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=16.66 E-value=42 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.525 Sum_probs=20.4
Q ss_pred hhhhhCCCCC-C-------chHHHHHHhcH--HHHHHHhc
Q 019930 55 VQDRLGYDRP-S-------KAVDWLIKKAK--SSIDKLAE 84 (334)
Q Consensus 55 lqd~LG~dk~-s-------kTv~WLL~~ak--~aI~~l~~ 84 (334)
+++.|||.-- + +||+|++++-. .+.+++++
T Consensus 296 ~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~~~~~k~~~~ 335 (346)
T d1oc2a_ 296 LRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKAEKEAVE 335 (346)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3467898521 3 68999998755 56666654
No 7
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.00 E-value=31 Score=26.15 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=14.0
Q ss_pred ccccccCcC-CCCCCCCCC
Q 019930 309 PARIHGEDH-HQHSNRPSS 326 (334)
Q Consensus 309 PARIqGEEE-~g~s~kpsS 326 (334)
-+||.|+|| +.+.|.|+|
T Consensus 74 sprv~gDe~e~~~d~~p~~ 92 (93)
T d1weoa_ 74 SPRVEGDEDEEDIDSGPSS 92 (93)
T ss_dssp CCCCTTSCCCCCSCCCCSC
T ss_pred CCCCCCCccccccccCCCC
Confidence 467889655 888899987
No 8
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.21 E-value=79 Score=21.22 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.1
Q ss_pred ecCHHHHHHHhhhhhhhCCCCCCchH
Q 019930 43 RLSAHTAIQFYDVQDRLGYDRPSKAV 68 (334)
Q Consensus 43 Rls~~~A~~ff~lqd~LG~dk~skTv 68 (334)
+++.++..++.++-++||| +|...-
T Consensus 26 ~vs~~tr~rV~~~a~~lgY-~pn~~A 50 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELHY-SPSAVA 50 (57)
T ss_dssp CCCHHHHHHHHHHHHHHTC-CCCHHH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCCHHH
Confidence 5899999999999999999 565443
No 9
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.62 E-value=86 Score=21.66 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCCcceeecCHHHHHHHhhhhhhhCCCCCC
Q 019930 36 GPRDRRVRLSAHTAIQFYDVQDRLGYDRPS 65 (334)
Q Consensus 36 g~RdRRvRls~~~A~~ff~lqd~LG~dk~s 65 (334)
+.|-.|+|-+.+.-.+|-+--..||.|++.
T Consensus 2 ~~kk~R~~WT~elH~~Fv~Av~~lG~~~at 31 (64)
T d1irza_ 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAV 31 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccccc
Confidence 356779999999999999999999998764
No 10
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.01 E-value=16 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=10.1
Q ss_pred CCchHHHHHHhcH
Q 019930 64 PSKAVDWLIKKAK 76 (334)
Q Consensus 64 ~skTv~WLL~~ak 76 (334)
...+|+|||.++.
T Consensus 47 ~e~A~~~Lls~~~ 59 (63)
T d1wgna_ 47 IEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCC
Confidence 5678999998764
Done!