BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019931
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 126/230 (54%), Gaps = 25/230 (10%)
Query: 111 LLLFSGNDYLGLSSHPTIAKAAARH------GMGPRGSALICGYTNYHRLLESCLADLKK 164
+ ++ GNDYLG+ HP + AA H G G G+ I G T YHR LE+ +A L +
Sbjct: 48 ITVWCGNDYLGMGQHPVVL--AAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ + + AN A + + L G + I+SD+LNHAS+I+GI+
Sbjct: 106 KEAALVFSSAYNANDATL---STLRVLFPG---------LIIYSDSLNHASMIEGIKRNA 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K + ++H D++HL+ L++ K++ +S++SMDGDF P+ E+ + ++G
Sbjct: 154 GPKRI----FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
L +D+ H + G G GVAE+ +DI GTL+KA G GG+IA
Sbjct: 210 LTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAA 259
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 25/230 (10%)
Query: 111 LLLFSGNDYLGLSSHPTIAKAAARH------GMGPRGSALICGYTNYHRLLESCLADLKK 164
+ ++ GNDYLG+ HP + AA H G G G+ I G T YHR LE+ +A L +
Sbjct: 48 ITVWCGNDYLGMGQHPVVL--AAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ + + AN A + + L G + I+SD+LNHAS+I+GI+
Sbjct: 106 KEAALVFSSAYNANDATL---STLRVLFPG---------LIIYSDSLNHASMIEGIKRNA 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K + ++H D++HL+ L++ K++ +S++SMDGDF P+ E+ + ++G
Sbjct: 154 GPKRI----FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
L +D+ H + G G GVAE+ +DI GTL+ A G GG+IA
Sbjct: 210 LTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAXAYGVFGGYIAA 259
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+R+L+F N YLGL++ I KAA ++G G GS + G + H LE L+
Sbjct: 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG 102
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE +L TGF +N+ G ++ L+ ++ DE+ +HASIIDG R++
Sbjct: 103 KEAAILFSTGFQSNL------GPLSCLMGRNDYILLDER--------DHASIIDGSRLS- 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTM-RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
+V Y H +M L+ LS K++ TD +FSM+GD + EL + ++
Sbjct: 148 ---FSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDA 204
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+++DDAH V G G G A F DVD+ +GT SK+ GGF+A
Sbjct: 205 AVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVA 253
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 119/251 (47%), Gaps = 33/251 (13%)
Query: 99 DKTITFARQF-------KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICG 147
++ IT A+Q ++ F N+YLGL++HP + AA HG G ICG
Sbjct: 28 ERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGXDSHGFGXASVRFICG 87
Query: 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIF 207
+ H+ LE LA ED +L + F AN G + L G E AI
Sbjct: 88 TQDSHKELEQKLAAFLGXEDAILYSSCFDAN-------GGLFETLLGAED-------AII 133
Query: 208 SDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT---MRKKVVVTDSLFSM 264
SDALNHASIIDG+R+ + + + Y + D L+ L R ++ TD +FS
Sbjct: 134 SDALNHASIIDGVRLCKAKR----YRYANNDXQELEARLKEAREAGARHVLIATDGVFSX 189
Query: 265 DGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA- 323
DG A + + L KY L+ +DD+H G+NG G E + VDI GTL KA
Sbjct: 190 DGVIANLKGVCDLADKYDALVXVDDSHAVGFVGENGRGSHEYCDVXGRVDIITGTLGKAL 249
Query: 324 AGCQGGFIACR 334
G GG+ A R
Sbjct: 250 GGASGGYTAAR 260
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L F N+YLGL+ HP + K A ++G G ICG H+ LE +++
Sbjct: 43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGXASVRFICGTQTIHKELEKDISEFLG 102
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+D +L + F AN G + L G E AI SD LNHASIIDGIR+ +
Sbjct: 103 TDDTILYSSCFDAN-------GGLFETLLGPED-------AIISDELNHASIIDGIRLCK 148
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ + YK+ L+ L R K++ TD +FS DG A + + L KY
Sbjct: 149 AQR----YRYKNNAXGDLEAKLKEADEKGARFKLIATDGVFSXDGIIADLKSICDLADKY 204
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-AGCQGGFIA 332
L+ +DD+H G+NG G E VDI GTL KA G GG+ +
Sbjct: 205 NALVXVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTS 256
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 24/229 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ L FS NDYLGLS HP I +A A + G+G GS + GY+ H+ LE LA+
Sbjct: 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
LL +GFAAN AVI A+++A K+++IA +D L+HAS+++ ++
Sbjct: 99 YSRALLFISGFAANQAVI------AAMMA------KEDRIA--ADRLSHASLLEAASLSP 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
++ + H D++HL LL+ +++VVT+ +FSMDGD AP+ E+ ++ +++
Sbjct: 145 S----QLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGW 200
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
L++DDAHGT V G+ G G + + ++ V T K G G + C
Sbjct: 201 LMVDDAHGTGVIGEQGRGSC--WLQKVKPELLVVTFGKGFGVSGAAVLC 247
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 30/232 (12%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ L FS NDYLGLS HP I +A A + G+G GS + GY+ H+ LE LA+
Sbjct: 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
LL +GFAAN AVI A+++A K+++IA +D L+HAS+++ ++
Sbjct: 99 YSRALLFISGFAANQAVI------AAMMA------KEDRIA--ADRLSHASLLEAASLSP 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
++ + H D++HL LL+ +++VVT+ +FSMDGD AP+ E+ ++ +++
Sbjct: 145 S----QLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGW 200
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNC---ERDVDICVGTLSKAAGCQGGFIAC 333
L++DDAHGT V G+ G G +C + ++ V T K G G + C
Sbjct: 201 LMVDDAHGTGVIGEQGRG-----SCWLQKVKPELLVVTFGKGFGVSGAAVLC 247
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 23/227 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ +L +Y+G++ P + A + G G GS ++ G H+ E L +
Sbjct: 44 RKTILLGTYNYMGMTFDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALKEFYG 103
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E ++ TG+ AN+ +I S LAG K + I + DA +HASI DG + +
Sbjct: 104 TEHAIVFSTGYQANLGMI-------STLAG-----KGDYIIL--DADSHASIYDGCWLGD 149
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 150 ----AEIVRFRHNSVEDLDKRLGRLPAEAGKLVVLEGVYSMMGDIAPLQEMVAVSKKHGA 205
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGF 330
++++D+AHG G++G GV E+ E DVD VGT S + G GGF
Sbjct: 206 MILVDEAHGMGFFGEHGRGVFEEAGVEADVDFVVGTFSXSVGTVGGF 252
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 65 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 124
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 125 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 170
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 171 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 226
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT SK+ G GGF+
Sbjct: 227 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFV 274
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 124 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 169
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 170 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT SK+ G GGF+
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFV 273
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 124 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 169
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 170 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT SK+ G GGF+
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFV 273
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 65 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 124
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 125 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 170
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 171 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 226
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT S + G GGF+
Sbjct: 227 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFV 274
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 124 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 169
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 170 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT S + G GGF+
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFV 273
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTWGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 124 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 169
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 170 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT S + G GGF+
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFV 273
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I S LAG K E + + DA +HASI DG +
Sbjct: 124 TTGAIVFSTGYMANLGII-------STLAG-----KGEYVIL--DADSHASIYDGCQQGN 169
Query: 225 RTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L K L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 170 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
++++D+AH G NG GV E E +D VGT S + G GGF+
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVGGFV 273
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 30/223 (13%)
Query: 114 FSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCL 169
F+ +DYL LSS + A ++G G +GS ++CGYT+ + E A +
Sbjct: 56 FTTSDYLNLSSAHNLKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFAKFINYPRAI 115
Query: 170 LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229
+GF AN+A+ ++L + + +IF+D HASIIDGI++++
Sbjct: 116 FFSSGFMANLAI------YSTLFSKHD--------SIFADKYIHASIIDGIKLSQ----A 157
Query: 230 EVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDD 289
++ YKH +S L+ + K + T+ +FS G + +L K+ + L++D+
Sbjct: 158 KLRRYKHQQLSQLQDIYDG----KSFITTEGVFSTSGSITQLDKLAKITPEK---LIVDE 210
Query: 290 AHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFI 331
AH V GKNG G F ++ ICV L KA G G +
Sbjct: 211 AHSFGVLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVV 253
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICG---YTNYHR-LLESCLADLKKKED 167
++ NDYL L++HP I A+ + + S + +Y + ++E LA ++
Sbjct: 42 IILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE 101
Query: 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227
CLL +G+ AN+ ++ ++ ++ D H S+ +G R A
Sbjct: 102 CLLSQSGWNANVGLL--------------QTICQPNTNVYIDFFAHMSLWEGARYA--NA 145
Query: 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVL 287
F++ +CD HL+ L+ ++V DS++S G AP+ ELV + +++G L++
Sbjct: 146 QAHPFMHNNCD--HLRMLIQ--RHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV 201
Query: 288 DDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
D++H G NG G+ + R+V +L+K + G I C
Sbjct: 202 DESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWC 247
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICG---YTNYHR-LLESCLADLKKKED 167
++ NDYL L++HP I A+ + + S + +Y + ++E LA ++
Sbjct: 42 IILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE 101
Query: 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227
CLL +G+ AN+ ++ ++ ++ D H S+ +G R A
Sbjct: 102 CLLSQSGWNANVGLL--------------QTICQPNTNVYIDFFAHMSLWEGARYA--NA 145
Query: 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVL 287
F++ +CD HL+ L+ ++V DS++S G AP+ ELV + +++G L++
Sbjct: 146 QAHPFMHNNCD--HLRMLIQ--RHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV 201
Query: 288 DDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
D++H G NG G+ + R+V +L+K + G I C
Sbjct: 202 DESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWC 247
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICG---YTNYHR-LLESCLADLKKKED 167
++ NDYL L++HP I A+ + + S + +Y + ++E LA ++
Sbjct: 62 IILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE 121
Query: 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227
CLL +G+ AN+ ++ ++ ++ D H S+ +G R A
Sbjct: 122 CLLSQSGWNANVGLL--------------QTICQPNTNVYIDFFAHMSLWEGARYA--NA 165
Query: 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVL 287
F++ +CD HL+ L+ ++V DS++S G AP+ ELV + +++G L++
Sbjct: 166 QAHPFMHNNCD--HLRMLIQ--RHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV 221
Query: 288 DDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
D++H G NG G+ + R+V +L+K + G I C
Sbjct: 222 DESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWC 267
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 206 IFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMD 265
IF A+ H SI + I A K++ V D+ HL+ LL+ KK+V +
Sbjct: 96 IFISAIEHLSIYNHINYAPNIKVISVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNES 155
Query: 266 GDFAPMVELVKLRRKY 281
G + E+ K+ +KY
Sbjct: 156 GVLQDIAEIGKITKKY 171
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 154 LLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNH 213
LLE+ +A L+ E L +G A + + + L GDE + L+H
Sbjct: 69 LLEARMASLEGGEAGLALASGMGAITSTLWTL-----LRPGDEVLLGNTLYGCTFAFLHH 123
Query: 214 ASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273
G+++ +H DM+ L+ L + T +V+ +S + + A +
Sbjct: 124 GIGEFGVKL------------RHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAG 171
Query: 274 LVKLRRKYGFLLVLDDAHGT 293
+ K+ RK+G +V+D+ + T
Sbjct: 172 VAKIARKHGATVVVDNTYCT 191
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 154 LLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNH 213
LLE+ +A L+ E L +G A + + + L GDE + L+H
Sbjct: 69 LLEARMASLEGGEAGLALASGMGAITSTLWTL-----LRPGDEVLLGNTLYGCTFAFLHH 123
Query: 214 ASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273
G+++ +H DM+ L+ L + T +V+ +S + + A +
Sbjct: 124 GIGEFGVKL------------RHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAG 171
Query: 274 LVKLRRKYGFLLVLDDAHGT 293
+ K+ RK+G +V+D+ + T
Sbjct: 172 VAKIARKHGATVVVDNTYCT 191
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 154 LLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNH 213
LLE+ +A L+ E L +G A + + + L GDE + L+H
Sbjct: 69 LLEARMASLEGGEAGLALASGMGAITSTLWTL-----LRPGDEVLLGNTLYGHTFAFLHH 123
Query: 214 ASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273
G+++ +H DM+ L+ L + T +V+ +S + + A +
Sbjct: 124 GIGEFGVKL------------RHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAG 171
Query: 274 LVKLRRKYGFLLVLDDAHGT 293
+ K+ RK+G +V+D+ + T
Sbjct: 172 VAKIARKHGATVVVDNTYCT 191
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325
EL KL +KYG LLV D+ G+ G A E FN DV TL+KA G
Sbjct: 237 ELQKLAKKYGILLVDDEVQ--MGLGRTGKLFAIENFNTVPDVI----TLAKALG 284
>pdb|3NKL|A Chain A, Crystal Structure Of Udp-D-Quinovosamine 4-Dehydrogenase
From Vibrio Fischeri
pdb|3NKL|B Chain B, Crystal Structure Of Udp-D-Quinovosamine 4-Dehydrogenase
From Vibrio Fischeri
Length = 141
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 206 IFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVV 257
I D H + GI I R K +E + KHC + L + S ++KKV++
Sbjct: 35 IDDDRKKHKTTXQGITIY-RPKYLERLIKKHCISTVLLAVPSASQVQKKVII 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,177,673
Number of Sequences: 62578
Number of extensions: 417691
Number of successful extensions: 931
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 28
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)