RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019931
(334 letters)
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 536 bits (1381), Expect = 0.0
Identities = 232/337 (68%), Positives = 279/337 (82%), Gaps = 11/337 (3%)
Query: 1 MENSSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHW 60
M + S WDKWVEEA++ LE+ ++LRSLRPI +S + V++ + G+DYEVFD + W
Sbjct: 1 MADHS-WDKWVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDDYEVFDGLCQW 59
Query: 61 DRNAVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYL 120
DR +V++S+S TFQ+WLHD+PS+G+E I GD LA ++ +FK+LLLFSGNDYL
Sbjct: 60 DRTSVEVSVSIPTFQKWLHDIPSNGEE--IFSGDALAEERK----GRFKKLLLFSGNDYL 113
Query: 121 GLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFA 176
GLSSHPTI+ AAA +GMGP+GSALICGYT YHRLLES LADLKKKEDCL+CPTGFA
Sbjct: 114 GLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFA 173
Query: 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236
ANMA +VA+G++ASLLA K K+EK+AIFSDALNHASIIDG+R+AER VEVFVY+H
Sbjct: 174 ANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH 233
Query: 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296
CDM HL +LLS C M++KVVVTDSLFSMDGDFAPM EL +LR+KYGFLLV+DDAHGTFVC
Sbjct: 234 CDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC 293
Query: 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
G+NGGGVAE+FNCE DVD+CVGTLSKAAGC GGFIAC
Sbjct: 294 GENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGFIAC 330
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 246 bits (629), Expect = 4e-79
Identities = 106/233 (45%), Positives = 138/233 (59%), Gaps = 26/233 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+++L F NDYLGL+SHP + +AA R+G+G GS LI G ++ H LE LAD
Sbjct: 39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E LL +GF AN+ ++ A + IFSD LNHASIIDGIR++
Sbjct: 99 AEAALLFSSGFVANLGLLSA--------------LLKKGDLIFSDELNHASIIDGIRLSR 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
EV +KH D+ HL+ LL R+K++VT+ +FSMDGD AP+ ELV+L KY
Sbjct: 145 ----AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKY 200
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIAC 333
G LL +D+AH V G NG G+AE F E +VDI VGTL KA G GG+IA
Sbjct: 201 GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAG 253
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 240 bits (616), Expect = 1e-77
Identities = 97/232 (41%), Positives = 134/232 (57%), Gaps = 24/232 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L F NDYLGL++HP + +AA ++G+G GS LI G ++ H LE LA+
Sbjct: 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ +G+AAN V+ + + I SD+LNHASIIDGIR++
Sbjct: 61 KEAALVFSSGYAANDGVL--------------STLAGKGDLIISDSLNHASIIDGIRLSG 106
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTM--RKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
K ++KH DM L+ LL KK++VT+ ++SMDGD AP+ ELV L +KYG
Sbjct: 107 AKK----RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYG 162
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+L +D+AH V G +G GV E DVDI +GTL KA G GG+IA
Sbjct: 163 AILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGS 214
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 240 bits (614), Expect = 9e-77
Identities = 93/230 (40%), Positives = 128/230 (55%), Gaps = 23/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTI----AKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+R+L F+ NDYLGL+ HP + +AA R+G G GS L+ G + H LE LA+
Sbjct: 39 RRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E LL +G+AAN+AV+ A+ GD I SD LNHAS+IDG R++
Sbjct: 99 AERALLFSSGYAANLAVLTALAG-----KGD---------LIVSDKLNHASLIDGARLSR 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
V Y H D+ L+ LL+ + ++VT+S+FSMDGD AP+ ELV L R++G
Sbjct: 145 ----ARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAW 200
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIAC 333
L++D+AHGT V G G G+A + I VGTL KA G G +
Sbjct: 201 LLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLG 250
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 227 bits (582), Expect = 2e-72
Identities = 103/234 (44%), Positives = 136/234 (58%), Gaps = 24/234 (10%)
Query: 106 RQFKRLLLFSGNDYLGLSSHPTI----AKAAARHGMGPRGSALICGYTNYHRLLESCLAD 161
R +RLL FS NDYLGL+SHP + + A ++G G S L+ G + H LE LA+
Sbjct: 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAE 72
Query: 162 LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221
K E LL +G+ AN+ VI A+ + GD I SDALNHAS+IDG R
Sbjct: 73 WKGTEAALLFSSGYLANVGVISAL-----VGKGD---------LILSDALNHASLIDGCR 118
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK 280
++ V Y+H D+ HL+ LL R+K++VTD +FSMDGD AP+ +LV L +
Sbjct: 119 LSG----ARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAER 174
Query: 281 YGFLLVLDDAHGTFVCGKNGGGVAEQFN-CERDVDICVGTLSKAAGCQGGFIAC 333
YG L++DDAHGT V G++G G E F VDI VGTLSKA G G ++A
Sbjct: 175 YGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAG 228
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 194 bits (496), Expect = 4e-59
Identities = 92/236 (38%), Positives = 121/236 (51%), Gaps = 30/236 (12%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K ++ F N+YLGL++HP + AA HG G ICG + H+ LE LA
Sbjct: 42 KEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI-- 222
ED +L + F AN + L G E AI SDALNHASIIDG+R+
Sbjct: 102 TEDAILYSSCFDANGGLF-------ETLLGKED-------AIISDALNHASIIDGVRLCK 147
Query: 223 AERTKMVEVFVYKHCDMSHLKTLL---SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRR 279
A+R + Y + DM+ L+ L R K++ TD +FSMDGD AP+ E+ L
Sbjct: 148 AKR------YRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLAD 201
Query: 280 KYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-AGCQGGFIACR 334
KY L+++DD+H G+NG G E F VDI GTL KA G GG+ A R
Sbjct: 202 KYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGR 257
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 186 bits (475), Expect = 7e-56
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 21/229 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+ + ++ NDYLG+ HP + +A R G G G+ I G +YH LE LADL
Sbjct: 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ +G+ +N A + +A L+ IFSD LNHAS+I+GIR +
Sbjct: 106 KEAALVFTSGYVSNDATL---STLAKLIPD---------CVIFSDELNHASMIEGIRRSR 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTM-RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K +++H D++HL+ LL+ R K++ +S++SMDGD AP+ E+ L KY
Sbjct: 154 CEK----HIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L LD+ H + G GGG+AE+ +DI GTL+KA G GG+IA
Sbjct: 210 LTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMGGYIA 258
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 185 bits (471), Expect = 1e-55
Identities = 96/229 (41%), Positives = 128/229 (55%), Gaps = 23/229 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKK 164
K ++ S N+YLG + HP + +AAA+ +G+G I G H LE LA KK
Sbjct: 33 KEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E L+ +GF N V+ A+ L GD + SD LNHASIIDG+R+ +
Sbjct: 93 TEAALVFQSGFNTNQGVLSAL-----LRKGD---------IVLSDELNHASIIDGLRLTK 138
Query: 225 RTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
TK + YKH DM L +L + KK++VTD +FSMDGD AP+ E+V+L +YG
Sbjct: 139 ATKKI----YKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGA 194
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAHG+ V G+ G G F E VDI VGTLSKA G GG+ A
Sbjct: 195 VTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVGGYAA 243
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 178 bits (453), Expect = 8e-53
Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIA----KAAARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K + ++ NDYLG+ HP + + ++G G G+ I G H LE+ LADL
Sbjct: 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ +G+ AN A + +A ++ G IFSD LNHAS+I+GIR +
Sbjct: 105 KESALVFTSGYVANDATL---ATLAKIIPG---------CVIFSDELNHASMIEGIRHSG 152
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRK-KVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E F+++H D++HL+ LL + K++ +S++SMDGD AP+ E+ L KYG
Sbjct: 153 ----AEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGA 208
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L LD+ H + G GGG+AE+ +DI GTL+KA G GG+IA
Sbjct: 209 LTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVGGYIA 257
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 164 bits (418), Expect = 1e-47
Identities = 95/264 (35%), Positives = 126/264 (47%), Gaps = 34/264 (12%)
Query: 87 ENEIICGDGLANDKTITFARQFKRL--------LLFSGNDYLGLSSHPTIAKAAAR---- 134
E E I GL + I + Q + L F N+YLGLSSHP + +AA
Sbjct: 8 ELESIREAGLFKSERIITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDE 67
Query: 135 HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAG 194
HG G ICG + H+ LE+ +A ED +L + F AN G + L G
Sbjct: 68 HGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDAN-------GGLFETLLG 120
Query: 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC---TM 251
E AI SDALNHASIIDG+R+ + + + Y + DM+ L+ L
Sbjct: 121 AED-------AIISDALNHASIIDGVRLCKAKR----YRYANNDMADLEAQLKEARAAGA 169
Query: 252 RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCER 311
R +++ TD +FSMDG AP+ E+ L KY L+++D+ H T G G G E
Sbjct: 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMG 229
Query: 312 DVDICVGTLSKA-AGCQGGFIACR 334
VDI GTL KA G GGF R
Sbjct: 230 RVDIITGTLGKALGGASGGFTTAR 253
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 161 bits (409), Expect = 2e-46
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+R+ ++ NDYLG+ HP + A R+G G G+ I G ++ H LLE LADL
Sbjct: 46 RRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE LL +G+ +N A A+ + LL G I SDALNHAS+I+GIR +
Sbjct: 106 KESALLFTSGYVSNDA---ALSTLGKLLPG---------CVILSDALNHASMIEGIRRSG 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K V ++H D++ L+ L S R K++ +S++SMDGD AP+ + L +Y
Sbjct: 154 AEKQV----FRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L +D+ H + G GGG+AE+ +D+ GTL+KA GC GG+IA
Sbjct: 210 LTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLGGYIA 258
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 161 bits (409), Expect = 3e-46
Identities = 84/221 (38%), Positives = 118/221 (53%), Gaps = 21/221 (9%)
Query: 117 NDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCP 172
NDYLG+ HP + A G G G+ I G +YH LLE+ LADL KE LL
Sbjct: 53 NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFT 112
Query: 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVF 232
+G+ +N A A+ + S L G I SD LNHAS+I+GIR + K
Sbjct: 113 SGYVSNWA---ALSTLGSRLPG---------CVILSDELNHASMIEGIRHSRAEK----R 156
Query: 233 VYKHCDMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAH 291
+++H D + L+ LS R K+V +S++SMDGD AP+ E+ + K+G + LD+ H
Sbjct: 157 IFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVH 216
Query: 292 GTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ G GGG+AE+ + I GTL+KA G GG+I
Sbjct: 217 AVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMGGYIT 257
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 117 bits (295), Expect = 8e-30
Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKED 167
++ NDYL LS HP I KA G SA+ + E LA E
Sbjct: 57 IILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES 116
Query: 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227
CLLC +G+AAN+ ++ + D ++ D H S+ +G+R A +
Sbjct: 117 CLLCQSGWAANVGLLQTIA--------------DPNTPVYIDFFAHMSLWEGVRAA-GAQ 161
Query: 228 MVEVFVYKHCDMSHLKTLLSCCTMR--KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLL 285
++H D+ HL+ + R ++V DS++S G AP+ ++V + ++G +L
Sbjct: 162 AHP---FRHNDVDHLRRQIE----RHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVL 214
Query: 286 VLDDAH--GTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
V+D++H GT G G G+ + V +L+KA + G I C
Sbjct: 215 VVDESHSLGTH--GPQGAGLVAELGLTSRVHFITASLAKAFAGRAGIITC 262
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 111 bits (279), Expect = 6e-28
Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 18/234 (7%)
Query: 111 LLLFSGNDYLGLSSHPT-IAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCL 169
+ N+YLG S +AKA G G+ + G T+ L LA + L
Sbjct: 3 KINLGSNEYLGDSGTLPAVAKAEKDALAG--GTRNLYGPTDGLPELREALAKFLGRSPVL 60
Query: 170 LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229
AV+ G A++ A + AI A + S I R+A ++V
Sbjct: 61 K----LDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA-GGEVV 115
Query: 230 EVFVYK----HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLR---RKYG 282
+Y H D L+ L T KVV+ S + G A + EL KL +++
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333
LL++D+A+ FV G E + VG+ SKA G G G+I
Sbjct: 176 ILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILG 229
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 104 bits (260), Expect = 7e-25
Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 36/254 (14%)
Query: 97 ANDKTITFARQFK--RLLLFSGNDYLGLSSH-----PTIAKAAARHGMGPRGSALICGYT 149
+ND T R K R L +YLG ++ P + ++ ++ S + G T
Sbjct: 86 SNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTT 145
Query: 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSD 209
HR LE +A K ++ G+A N +I A+ L I SD
Sbjct: 146 KLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGL--------------IISD 191
Query: 210 ALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLL-------SCCTMR---KKVVVTD 259
+LNH SI++G R + T + V++H SHL+ +L T R K +V+ +
Sbjct: 192 SLNHNSIVNGARGSGAT----IRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247
Query: 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVG 318
++SM+G+ + E+V + +KY + LD+AH GK G GV E + DVDI +G
Sbjct: 248 GIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMG 307
Query: 319 TLSKAAGCQGGFIA 332
T +K+ G GG+IA
Sbjct: 308 TFTKSFGSCGGYIA 321
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 92.0 bits (229), Expect = 7e-21
Identities = 84/292 (28%), Positives = 127/292 (43%), Gaps = 43/292 (14%)
Query: 57 MQHWDRN-AVQISISDSTFQRWLHDVPSSGDE--NEIICGDGLANDKTITFARQFKRLLL 113
MQH RN +I+ ++ + + DE N + G+ T+ F +
Sbjct: 1 MQHKYRNNKKRINRAEKFWDA-------AYDEGLNGLTVGEREGILITLADGHTF---VN 50
Query: 114 FSGNDYLGLSSHPTIAKAAARHGMGPRGSALICG-----YTNYHRLLESCLADLKKKEDC 168
F YLGL +HP I + A + GS + + + LE L++L
Sbjct: 51 FVSCSYLGLDTHPAIIEGAVD-ALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGAS-V 108
Query: 169 LLCPTGFAANMAVI--VAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS--IIDGIRIAE 224
L + AA++ ++ +A G L G +F D HAS I+ GI A+
Sbjct: 109 LTFTSCSAAHLGILPLLASG----HLTGGVPP-----HMVF-DKNAHASLNILKGI-CAD 157
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
T EV H D+ L+ + C T + V D ++SM G AP+ EL++L+ KYG
Sbjct: 158 ET---EVETIDHNDLDALEDI--CKTNKTVAYVADGVYSM-GGIAPVKELLRLQEKYGLF 211
Query: 285 LVLDDAHGTFVCGKNGGG-VAEQFNCERDVD-ICVGTLSKAAGCQGGFIACR 334
L +DDAHG + GKNG G V + + + I +L KA G GG I
Sbjct: 212 LYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLG 263
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 87.3 bits (216), Expect = 3e-19
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 41/241 (17%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAA----RHGMG---PRGSALICGYTNYHRLLESCLADLKK 164
L F+ +D+L SS PT+ + A +G G PRG G + H LE C+A+
Sbjct: 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRG---FYGTIDAHLELEQCMAEFLG 57
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E +L G + + + A LL D + +++ G+ ++
Sbjct: 58 TESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNE--------------ALLVGVSLSR 103
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC-----------TMRKKVVVTDSLFSMDGDFAPMVE 273
V ++H DM L+ +L T +++ +V + L+ G AP+ E
Sbjct: 104 ----ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKE 159
Query: 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE--RDVDICVGTLSKAAGCQGGFI 331
LV L+ ++ + L+LD++ GK+G G E + +I +L A G GG
Sbjct: 160 LVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMT 219
Query: 332 A 332
Sbjct: 220 V 220
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 81.3 bits (201), Expect = 5e-17
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 36/237 (15%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAK----AAARHGMG---PRGSALICGYTNYHRLLESCLAD 161
K ++ F+ +YLGL + I + A ++G+G PRG G + H E+ +A
Sbjct: 109 KDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRG---FYGTIDVHLDCETKIAK 165
Query: 162 LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221
D +L G + +VI A GD I +D H I +G+
Sbjct: 166 FLGTPDSILYSYGLSTIFSVIPAFCK-----KGD---------IIVADEGVHWGIQNGLY 211
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKK-------VVVTDSLFSMDGDFAPMVEL 274
++ T + +KH DM L+ L T K +V ++++ G AP+ E+
Sbjct: 212 LSRST----IVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEI 267
Query: 275 VKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD-VDICVGTLSKAAGCQGGF 330
V+L+ KY F ++LD+++ V GK+G G++E F + +DI + A +GGF
Sbjct: 268 VRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGF 324
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 80.2 bits (198), Expect = 7e-17
Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 114 FSGNDYLGLSSHPTIAKAAAR----------HG-MGPRGSALICGYTNYHRLLESCLADL 162
F ND+LG S T+ + H +G GS I G ++ LE +A
Sbjct: 9 FVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHF 68
Query: 163 KKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR- 221
+ + P+G+ AN+ + + ++ + DE+ H S++ +
Sbjct: 69 HGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQV--------------HISVVYSLSV 114
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKK---VVVTDSLFSMDGDFAPMVELVKLR 278
I+ + ++H D+ HL++LL C R + S++S G AP+ +++ L
Sbjct: 115 ISGWHQ-----SFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALS 169
Query: 279 RKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
+KY L++D+AH + G +G G E + V T SKA G G +
Sbjct: 170 KKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLV-TYSKALGSMGAALLS 223
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 39.7 bits (93), Expect = 6e-04
Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 40/191 (20%)
Query: 155 LESCLADL--KKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALN 212
LE LA L + + P+G AN A ++A+ GDE + DA
Sbjct: 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG-----PGDE---------VIVDANG 50
Query: 213 HASIIDGIRIAERTKMVEVFVYK----------HCDMSHLKTLLSCCTMRKKVVVTDSLF 262
H S +A + + LK ++V
Sbjct: 51 HGSRY---WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKP-----NVALIVITPNT 102
Query: 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSK 322
+ G P+ E+ K+ ++YG LL++D A G + E D+ +L K
Sbjct: 103 TSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG-----ADVVTFSLHK 157
Query: 323 A-AGCQGGFIA 332
G GG +
Sbjct: 158 NLGGEGGGVVI 168
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 37.3 bits (87), Expect = 0.009
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDG-IRIAERTKMVEVFVYKHCD-MSHLKT 244
N+ + G DE I L H S I +A+RT + D + L
Sbjct: 98 NLVARGLGRSLKPGDE---IVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDA 154
Query: 245 LLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHG 292
L T + K+V + ++ G P+ E+ +L ++G L+++D A
Sbjct: 155 LEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQA 202
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 36.1 bits (84), Expect = 0.021
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVF 232
T + N+ ++L AGDE I I S+ +HA+I+ +AERT F
Sbjct: 89 TTESINLVAYSW--GDSNLKAGDE-------IVI-SEMEHHANIVPWQLLAERTGATLKF 138
Query: 233 VYKH----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLD 288
+ D+ L+ LL+ T K+V + ++ G P+ E+ KL + G +++D
Sbjct: 139 IPLDDDGTLDLDDLEKLLTEKT---KLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVD 195
Query: 289 DAHG 292
A
Sbjct: 196 GAQA 199
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 35.8 bits (83), Expect = 0.022
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329
EL +L +K+G L++ D+A+ V + + I + + SK G G G
Sbjct: 156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLD-AYERVIVLRSFSKTFGLPGLRIG 214
Query: 330 FIAC 333
++
Sbjct: 215 YLIA 218
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 32.9 bits (76), Expect = 0.21
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLL-AGDEKSFKDEKIAIFSDA 210
LE LA+L+ ED +G MA I + +LL AGD + + D
Sbjct: 65 RDALEEALAELEGGEDAFAFSSG----MAAISTA--LLALLKAGD-------HVLLPDDL 111
Query: 211 LNHASIIDGIRIAERTKMVEV-FVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269
+ +I ++ VEV FV D + + T K+V ++ + +
Sbjct: 112 Y-GGTYRLFEKILQKFG-VEVTFVDPGDDEALEAAIKEPNT---KLVFLETPSNPLLEVP 166
Query: 270 PMVELVKLRRKYGFLLVLDDAHGTFV 295
+ + +L + YG L+V+D+ T V
Sbjct: 167 DIPAIARLAKAYGALVVVDNTFATPV 192
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 31.8 bits (73), Expect = 0.53
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVF 232
T A N+ VA+ SL GDE + ++ +HA+++ +A+RT V
Sbjct: 70 TTEAINL---VAISLGRSLKPGDE--------ILVTEMEHHANLVPWQELAKRTG-ATVR 117
Query: 233 VYK-----HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVL 287
V D+ L+ LL+ T K+V + ++ G P+ E+ KL +YG L+V+
Sbjct: 118 VIPVDPNGLLDLDALEKLLTPRT---KLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVV 174
Query: 288 DDA 290
D A
Sbjct: 175 DAA 177
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 30.6 bits (70), Expect = 1.1
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 34/172 (19%)
Query: 131 AAARHGMGPRGSALICGYTNY----HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVG 186
A A R I Y+ LE LA L+ E L +G AA V++A+
Sbjct: 19 AEAADLFALREGGYI--YSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLAL- 75
Query: 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--KM-VEV-FVYKHCDMSHL 242
L AGD + SD L + R+ ER K+ +EV FV D
Sbjct: 76 ----LKAGDH--------VVASDDLYGGT----YRLFERLLPKLGIEVTFV----DPDDP 115
Query: 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTF 294
+ L + K+V +S + + + +L ++G LLV+D+ TF
Sbjct: 116 EALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDN---TF 164
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 30.8 bits (70), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 192 LAGDEKSFKDEKIAIFSDALNHASIIDGIRIA 223
+ GD ++ K E++ I NH S +DGI +A
Sbjct: 18 VTGDTQALKGERVLITP---NHVSFLDGILLA 46
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 30.4 bits (69), Expect = 1.3
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSK--AAGCQGG 329
L+ L KY L++ DD +G G + R V I +G+ SK A G + G
Sbjct: 251 ALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGR-V-IYLGSFSKTLAPGLRLG 308
Query: 330 FIAC 333
++
Sbjct: 309 YVVA 312
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 29.5 bits (67), Expect = 2.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDE 196
LE +A L+ E L +G AA A + +A L AGD
Sbjct: 54 RDALEERIAALEGGEAALAFSSGMAAIFAAL-----LALLKAGDH 93
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 29.6 bits (67), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA 304
L +L R+YG LLV+D+ H T G G A
Sbjct: 243 ALRELTRRYGTLLVIDETH-TISSGPGGYTRA 273
>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl group of N5,
N10-methylene tetrahydrofolate to glycine resulting in
the formation of serine and tetrahydrofolate. Both
eukaryotic and prokaryotic SHMT enzymes form tight
obligate homodimers; the mammalian enzyme forms a
homotetramer comprising four pyridoxal phosphate-bound
active sites.
Length = 402
Score = 29.1 bits (66), Expect = 3.1
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 252 RKKVVVTD-SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE 310
+ K++V S + DF E+ + G L++D AH V G GGV N
Sbjct: 161 KPKLIVAGASAYPRPIDFKRFREIAD---EVGAYLLVDMAH---VAGLVAGGVFP--NPL 212
Query: 311 RDVDICVGTLSKA-AGCQGGFIACR 334
D+ T K G +GG I R
Sbjct: 213 PGADVVTTTTHKTLRGPRGGLILTR 237
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 29.1 bits (66), Expect = 3.2
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325
EL KL KYG LL+ D+ G+ G A E F E D+ I TL+KA
Sbjct: 246 ELRKLADKYGILLIDDEVQTGM--GRTGKMFAIEHFGVEPDI-I---TLAKAIA 293
>gnl|CDD|199897 cd10911, LabA, LabA_like proteins. A well conserved group of
bacterial and archaeal proteins with no defined
function. LabA, a member from Synechococcus elongatus
PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. LabA_like domains exhibit some similarity to
the NYN domain, a distant relative of the PIN-domain
nucleases.
Length = 155
Score = 27.9 bits (63), Expect = 4.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 261 LFSMDGDFAPMVELVK 276
L S DGDFAP+VE ++
Sbjct: 110 LVSGDGDFAPLVEALQ 125
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 28.8 bits (65), Expect = 4.3
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329
+V+L R++ +++ D+ + V + RD I + + SK G G G
Sbjct: 187 AIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIG 246
Query: 330 FIAC 333
++
Sbjct: 247 WVVG 250
>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism].
Length = 395
Score = 28.5 bits (64), Expect = 5.1
Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFS--- 208
RL E LLC A A IV A LL + + + K + S
Sbjct: 68 ARLTELA---------ELLC-GLTGAEAAAIVNNNAAAVLLTLN--ALAEGKEVVVSRGE 115
Query: 209 -DALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVVTDSLFSMDG 266
+ D IR+A K+VEV + + + KV S + G
Sbjct: 116 LVEGGAFRVPDIIRLAG-AKLVEVGTTNRTHLKDYELAINENTALLLKVH--SSNYGFTG 172
Query: 267 DFAPMVELVKLRRKYGFLLVLDDAHGTFV 295
ELV++ + G +++D A G V
Sbjct: 173 ML-SEEELVEIAHEKGLPVIVDLASGALV 200
>gnl|CDD|224349 COG1432, COG1432, Uncharacterized conserved protein [Function
unknown].
Length = 181
Score = 27.8 bits (62), Expect = 5.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 253 KKVVVTDSLFSMDGDFAPMVELVK 276
KK V T LFS DGDF P+VE +
Sbjct: 108 KKNVDTIVLFSGDGDFIPLVEAAR 131
>gnl|CDD|129595 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I. Alternate names
include pyroglutamate aminopeptidase,
pyrrolidone-carboxylate peptidase, and
5-oxoprolyl-peptidase. It removes pyroglutamate
(pyrrolidone-carboxylate, a modified glutamine) that can
otherwise block hydrolysis of a polypeptide at the amino
end, and so can be extremely useful in the biochemical
studies of proteins. The biological role in the various
species in which it is found is not fully understood.
The enzyme appears to be a homodimer. It does not
closely resemble any other peptidases [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 212
Score = 27.9 bits (62), Expect = 5.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 270 PMVELVKLRRKYGFLLVLDDAHGTFVC 296
P+ +V +K G + GTFVC
Sbjct: 114 PVRAMVLAMKKAGIPADVSYTAGTFVC 140
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 28.0 bits (63), Expect = 7.9
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 242 LKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLD--DAHGTFVCGKN 299
+ + T R K ++ L G M ++ L +++G ++ D AHG GK
Sbjct: 112 PDLIEAAITPRTKAIIPVHLA---GQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKK 168
Query: 300 GGGVA 304
G
Sbjct: 169 VGSFG 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.423
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,256,536
Number of extensions: 1681021
Number of successful extensions: 1644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1574
Number of HSP's successfully gapped: 46
Length of query: 334
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 237
Effective length of database: 6,635,264
Effective search space: 1572557568
Effective search space used: 1572557568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)