RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019931
(334 letters)
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 144 bits (364), Expect = 1e-40
Identities = 81/234 (34%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ F N+YLGL++HP + AA HG G ICG + H+ LE LA
Sbjct: 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
ED +L + F AN + ++ + AI SDALNHASIIDG+R+
Sbjct: 105 MEDAILYSSCFDANGGLF--------------ETLLGAEDAIISDALNHASIIDGVRL-- 148
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ + Y + DM L+ L R ++ TD +FSMDG A + + L KY
Sbjct: 149 --CKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKY 206
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334
L+++DD+H G+NG G E + VDI GTL KA G GG+ A R
Sbjct: 207 DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAAR 260
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 125 bits (315), Expect = 1e-33
Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ L FS NDYLGLS HP I +A + G+G GS + GY+ H+ LE LA+
Sbjct: 38 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG 97
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
LL +GFAAN AVI + ++ I +D L+HAS+++ ++
Sbjct: 98 YSRALLFISGFAANQAVIA--------------AMMAKEDRIAADRLSHASLLEAASLSP 143
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
+ H D++HL LL+ +++VVT+ +FSMDGD AP+ E+ ++ +++
Sbjct: 144 SQLRR----FAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGW 199
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
L++DDAHGT V G+ G G + ++ V T K G G + C
Sbjct: 200 LMVDDAHGTGVIGEQGRGSCWLQKVKP--ELLVVTFGKGFGVSGAAVLCS 247
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 120 bits (302), Expect = 8e-32
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+ + ++ GNDYLG+ HP + A G G G+ I G T YHR LE+ +A L +
Sbjct: 45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ + + AN A + + + I+SD+LNHAS+I+GI+
Sbjct: 105 KEAALVFSSAYNANDATLSTLRV------------LFPGLIIYSDSLNHASMIEGIKRNA 152
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
K + + + + + K++ +S++SMDGDF P+ E+ + ++G L
Sbjct: 153 GPKRI---FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGAL 209
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+D+ H + G G GVAE+ +DI GTL+KA G GG+IA
Sbjct: 210 TYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAAS 259
>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 366
Score = 59.9 bits (144), Expect = 1e-10
Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 30/218 (13%)
Query: 117 NDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFA 176
D GLS I + GS+ + + + C+ +
Sbjct: 23 YDLSGLSGGFLIDEKDKALLNTYIGSS---YFAEKVNEYGLKHLGGDENDKCVGFNRTSS 79
Query: 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236
A +A I+A+ K + H SI +I K+
Sbjct: 80 AILATILALKP------------KKVIH-YLPELPGHPSIERSCKIVN---------AKY 117
Query: 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDG-DFAPMVELVKLRRKYGFLLVLDDAHGTFV 295
+ + +L+ V++T S + + +++ + ++ +DDA G V
Sbjct: 118 FESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARV 177
Query: 296 CGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
A + D+ V + K G +
Sbjct: 178 RLLFNQPPA----LKLGADLVVTSTDKLMEGPRGGLLA 211
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 54.5 bits (130), Expect = 6e-09
Identities = 42/262 (16%), Positives = 76/262 (29%), Gaps = 31/262 (11%)
Query: 102 ITFARQFKRLLLFSGNDYLGLSSH----------PTIAKAAARHGMGPRGSALICGYTNY 151
T + ++ SG + L S T A + RG G +Y
Sbjct: 17 RTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSY 76
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
+ L ES + ++ + + G A I + G ++S F D
Sbjct: 77 YALAES-VKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135
Query: 212 NHASIIDGIRI------AERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLFSM 264
S I+G + V + D+ L+ + +V +
Sbjct: 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195
Query: 265 DG----DFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---------R 311
G A + + + +KY +V+D A AE + +
Sbjct: 196 AGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK 255
Query: 312 DVDICVGTLSKAAGCQGGFIAC 333
D+ + K A G + C
Sbjct: 256 YADMLAMSAKKDAMVPMGGLLC 277
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 48.7 bits (114), Expect = 4e-07
Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 32/222 (14%)
Query: 125 HPTIAKAAARHGMGPRGSALICGYTNY-------HRLLESCLADLKKKEDCLLCPTGFAA 177
+A G G H + + L + + A
Sbjct: 15 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREA 74
Query: 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC 237
AV+ ++ + + D H S A +
Sbjct: 75 KFAVMHSLAK--------------KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD 120
Query: 238 DMSHLKTLLSCCTMRK-----KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHG 292
+ K + + G+ + ++ K+ +Y L+++ A+
Sbjct: 121 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 180
Query: 293 TFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+ D + G S AA G + +
Sbjct: 181 IGRMPVSL------KEIGADFIVGSGHKSMAASGPIGVMGMK 216
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 47.5 bits (111), Expect = 1e-06
Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 6/177 (3%)
Query: 151 YHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDA 210
LE A+ KE L P+G N I+A + + S
Sbjct: 35 TINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV 94
Query: 211 LNHASIIDG-IRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269
L+ + + ++ +T L +
Sbjct: 95 LSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH-----NRSGGRVVPLE 149
Query: 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326
+ E+ + +++G + +D A +G V E V C+ A
Sbjct: 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG 206
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 47.6 bits (112), Expect = 1e-06
Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 35/241 (14%)
Query: 113 LFSGNDYLGLSSHPTIAKAAAR------HGMGPRGS-----ALICGYTNYHRLLESCLAD 161
+ +G T +K HG+G G+ G + + L L
Sbjct: 62 KDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILES 121
Query: 162 LKK----KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASII 217
K + P +++ L A +K + I +H S I
Sbjct: 122 FFKQLGLNVHAIATPISTGMSIS--------LCLSAARKKYGSNVVIY---PYASHKSPI 170
Query: 218 DGIRIAERTKMVEVFVY----KHCDMSHLKTLLSCCTMRKKV--VVTDSLFSMDGDFAPM 271
+ + V + + ++ + V++ F + +
Sbjct: 171 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI 230
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
VE+ K+ Y +++ A+ + + VD V + K G
Sbjct: 231 VEIAKICENYDIPHIINGAYAIQNNYYLEK---LKKAFKYRVDAVVSSSDKNLLTPIGGG 287
Query: 332 A 332
Sbjct: 288 L 288
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 47.5 bits (112), Expect = 1e-06
Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%)
Query: 155 LESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDE-KSFKDEKIAIFSDALNH 213
LE + +L + + G A + G F N
Sbjct: 80 LEKTVKELFGFKHIVPTHQGRGAENLLSQLAIK-----PGQYVAGNMYFTTTRFHQEKNG 134
Query: 214 ASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP--- 270
A+ +D +R + + D++ L TL+ + ++ P
Sbjct: 135 ATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSM 194
Query: 271 --MVELVKLRRKYGFLLVLDDAH--------GTFVCGKNGGGVAEQF-NCERDVDICVGT 319
M + ++ YG + D G + + D C +
Sbjct: 195 ANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254
Query: 320 LSKAAGCQGGFIAC 333
K G C
Sbjct: 255 GKKDCLVNIGGFLC 268
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 46.7 bits (109), Expect = 2e-06
Identities = 26/224 (11%), Positives = 54/224 (24%), Gaps = 9/224 (4%)
Query: 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLL 170
L FS ++ G P +A+A +H G A G ++ ++ +++ +
Sbjct: 4 ALGFSSDNIAGA--SPEVAQALVKH---SSGQAGPYGTDELTAQVKRKFCEIFERDVEVF 58
Query: 171 -CPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229
PTG AAN + + A S + +
Sbjct: 59 LVPTGTAANALCL---SAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAK 115
Query: 230 EVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDD 289
V + + + + + + + L +D
Sbjct: 116 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG 175
Query: 290 AHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
+ G AE + G +
Sbjct: 176 SRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLF 219
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 44.1 bits (103), Expect = 1e-05
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 227 KMVEVFVYKHCDMS-HLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYG 282
K VEV Y+ + ++ L T + + ++ +S + G + E+ ++
Sbjct: 133 KPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHD 192
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA---AGCQGGFIAC 333
+++ D+ + F+ + + I V SK G + GF+A
Sbjct: 193 LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA 246
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 39.5 bits (91), Expect = 4e-04
Identities = 24/202 (11%), Positives = 54/202 (26%), Gaps = 28/202 (13%)
Query: 155 LESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAI----FSDA 210
L+ +L + + G A + + L ++ + I F
Sbjct: 80 LKDKAKELFNYDYIIPAHQGRGAENILFPVL-----LKYKQKEGKAKNPVFISNFHFDTT 134
Query: 211 LNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMD 265
H + I T+ D+ LK ++ V + ++
Sbjct: 135 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNS 194
Query: 266 GDFAP-----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---------R 311
P + E+ ++ +++G +V+D A + N +
Sbjct: 195 AGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK 254
Query: 312 DVDICVGTLSKAAGCQGGFIAC 333
D + K G +
Sbjct: 255 YADALTMSAKKDPLLNIGGLVA 276
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 398
Score = 34.1 bits (77), Expect = 0.021
Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 16/147 (10%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
+LE ++ L+ E LL +G M +
Sbjct: 69 TVVLEEKISALEGAESTLLMASG----MCASTVM------------LLALVPAGGHIVTT 112
Query: 212 NHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271
I I + + L+ + + T+S + +
Sbjct: 113 TDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDI 172
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGK 298
+ KL + G L+ +D T + K
Sbjct: 173 ELVSKLCHEKGALVCIDGTFATPLNQK 199
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 34.1 bits (77), Expect = 0.022
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
LES LA L K + +G AA AV + G+E
Sbjct: 51 RDALESLLAKLDKADRAFCFTSGMAALSAV------THLIKNGEEIVA------------ 92
Query: 212 NHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271
R+ + V K + + L + + + K+V +S + + +
Sbjct: 93 GDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDI 152
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGK 298
++ ++ G L+++D++ + V +
Sbjct: 153 RKISEMAHAQGALVLVDNSIMSPVLSR 179
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 32.8 bits (74), Expect = 0.047
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 17/144 (11%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
LLE+ +A L+ E L +G A + + L GDE + L
Sbjct: 61 LNLLEARMASLEGGEAGLALASGMGAITSTL-----WTLLRPGDEVLLGNTLYGCTFAFL 115
Query: 212 NHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271
+H G +H DM+ L+ L + T +V+ +S + + A +
Sbjct: 116 HHGIGEFG------------VKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADI 163
Query: 272 VELVKLRRKYGFLLVLDDAHGTFV 295
+ K+ RK+G +V+D+ + T
Sbjct: 164 AGVAKIARKHGATVVVDNTYCTPY 187
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 32.1 bits (72), Expect = 0.078
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 155 LESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDE 196
LE +A L+ E C +G A A + L AGD
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTF-----LKAGDH 39
>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS
{Escherichia coli [TaxId: 562]}
Length = 384
Score = 30.2 bits (67), Expect = 0.33
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 17/147 (11%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
+++ LA+L+ +L TG +A V LL
Sbjct: 52 RDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAP---------------- 95
Query: 212 NHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271
H R+ + + D + L + + K+V+ +S + +
Sbjct: 96 -HDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDI 154
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGK 298
++ L R+ G + V+D+ +
Sbjct: 155 AKICHLAREVGAVSVVDNTFLSPALQN 181
>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
beta subunit {Oxytricha nova [TaxId: 200597]}
Length = 216
Score = 28.9 bits (64), Expect = 0.65
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 16 SKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQ 75
+ LEA ++ S +P + +R + R P ++ D E +QH+ A+Q +I+ +
Sbjct: 102 ANLEARLIVHSFKP---NLQERLNPTRYPVNLFRDDEFKTTIQHFRHTALQAAINKTVKG 158
Query: 76 RWLHDVPSSGD 86
L D+ D
Sbjct: 159 DNLVDISKVAD 169
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 29.4 bits (65), Expect = 0.67
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ + +KY L V D+ T + +N + D V L KA GG
Sbjct: 211 GVYDICKKYNVLFVADEVQ-TGLGRTGKLLCVHHYNVKPD----VILLGKALS--GGHYP 263
Query: 333 CR 334
Sbjct: 264 IS 265
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
{Thermus thermophilus [TaxId: 274]}
Length = 421
Score = 28.7 bits (63), Expect = 1.1
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 24/181 (13%)
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
+LE LA L+ + L +G AA + + + + + L
Sbjct: 60 VDVLEKRLAALEGGKAALATASGHAAQFLALTTL-------------AQAGDNIVSTPNL 106
Query: 212 NHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271
+ +R + F + L T + +S+ + + +
Sbjct: 107 YGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKT---RAWWVESIGNPALNIPDL 163
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
L + R+ G L++D+ G + +L+K G G I
Sbjct: 164 EALAQAAREKGVALIVDNTFGMGGYLLR--------PLAWGAALVTHSLTKWVGGHGAVI 215
Query: 332 A 332
A
Sbjct: 216 A 216
>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 369
Score = 26.8 bits (59), Expect = 4.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHA 214
+ + SLL G D +IF DA+ +
Sbjct: 247 LSKLFSLLGGTAFEVSDPTRSIFFDAVEGS 276
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor,
TetR) {Escherichia coli [TaxId: 562]}
Length = 138
Score = 25.3 bits (55), Expect = 7.1
Identities = 11/82 (13%), Positives = 19/82 (23%), Gaps = 28/82 (34%)
Query: 103 TFARQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADL 162
A F+R LL + AK + +E+ L
Sbjct: 14 NNAMSFRRALL----------RYRDGAKVHLGTRPDE----------KQYDTVETQLR-- 51
Query: 163 KKKEDCLLCPTGFAANMAVIVA 184
+ GF+ +
Sbjct: 52 ------FMTENGFSLRDGLYAI 67
>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 371
Score = 25.6 bits (56), Expect = 8.4
Identities = 2/36 (5%), Positives = 13/36 (36%)
Query: 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHA 214
+I + + ++ + +K+ ++ +
Sbjct: 241 NVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKS 276
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 24.8 bits (54), Expect = 8.6
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALN--HASIIDGIRIAERTKMVEVFVYKHC 237
IV +G + S LA + ++ F D + G I E ++ V
Sbjct: 6 LCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVI-EHVDLLPQRVPGRI 64
Query: 238 DM 239
++
Sbjct: 65 EI 66
>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 211
Score = 25.6 bits (55), Expect = 8.9
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 69 ISDSTFQRWLHDVPSSGD-ENEIICGDGLANDKTITFARQFKRLLLFSGNDYLG 121
++ S DVPS D + + D T+TF +LF G D G
Sbjct: 136 VNKSGKVVVSVDVPSGIDSNTGKVLRTAVKADLTVTFGVPKIGHILFPGRDLTG 189
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 25.5 bits (54), Expect = 9.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 170 LCPTGFAANMAVIVAVGNIASLLAGDE 196
+ +G++AN VA + LL G+E
Sbjct: 160 MPKSGYSANSQGKVAAAAVVVLLKGEE 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.423
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,308,170
Number of extensions: 61493
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 31
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)