Query 019932
Match_columns 334
No_of_seqs 248 out of 1781
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 100.0 1.9E-31 4.2E-36 280.5 16.4 156 174-334 18-173 (765)
2 PLN03185 phosphatidylinositol 100.0 4.6E-31 1E-35 277.6 16.0 148 182-334 3-150 (765)
3 COG4642 Uncharacterized protei 99.8 2.2E-18 4.9E-23 146.3 9.3 124 199-322 15-138 (139)
4 COG4642 Uncharacterized protei 99.7 8.7E-18 1.9E-22 142.7 10.8 121 214-334 7-127 (139)
5 KOG0231 Junctional membrane co 99.7 1.1E-16 2.3E-21 162.2 7.4 150 180-333 111-275 (455)
6 KOG0231 Junctional membrane co 99.5 4.5E-15 9.7E-20 150.4 6.0 154 176-334 131-299 (455)
7 COG2849 Uncharacterized protei 99.3 9.6E-11 2.1E-15 109.1 15.8 131 202-332 83-218 (230)
8 COG2849 Uncharacterized protei 99.1 1E-09 2.2E-14 102.3 14.2 122 198-319 103-229 (230)
9 PF02493 MORN: MORN repeat; I 97.3 0.0002 4.4E-09 42.8 2.8 21 241-261 1-21 (23)
10 PF02493 MORN: MORN repeat; I 97.3 0.00025 5.5E-09 42.4 2.7 22 310-331 1-22 (23)
11 smart00698 MORN Possible plasm 97.2 0.00072 1.6E-08 42.1 4.0 20 241-260 3-22 (26)
12 smart00698 MORN Possible plasm 97.2 0.00074 1.6E-08 42.1 4.1 19 264-282 3-21 (26)
13 PF07202 Tcp10_C: T-complex pr 89.0 6.2 0.00013 35.8 11.0 11 228-238 45-55 (179)
14 PF14977 FAM194: FAM194 protei 83.0 6.9 0.00015 36.3 8.3 68 234-309 10-79 (208)
15 PF07202 Tcp10_C: T-complex pr 79.5 11 0.00023 34.3 8.1 13 273-285 117-129 (179)
16 PF07661 MORN_2: MORN repeat v 75.7 4.8 0.0001 23.0 3.2 10 276-285 4-13 (22)
17 PF14977 FAM194: FAM194 protei 73.5 26 0.00055 32.6 9.0 55 227-285 22-78 (208)
18 PF14181 YqfQ: YqfQ-like prote 57.1 2.7 5.8E-05 37.5 -0.7 20 17-36 81-100 (161)
19 PF13153 DUF3985: Protein of u 55.2 23 0.00049 24.5 3.6 30 114-146 4-33 (44)
20 PF05096 Glu_cyclase_2: Glutam 53.2 1.7E+02 0.0038 28.1 10.8 90 206-302 47-136 (264)
21 PF02932 Neur_chan_memb: Neuro 48.2 12 0.00027 31.5 2.0 25 90-114 16-40 (237)
22 PHA03030 hypothetical protein; 44.8 16 0.00034 30.4 1.9 19 110-128 3-21 (122)
23 PF03032 Brevenin: Brevenin/es 35.7 24 0.00052 25.1 1.5 14 134-147 1-14 (46)
24 PF06024 DUF912: Nucleopolyhed 32.2 22 0.00048 29.1 1.0 28 105-132 63-90 (101)
25 PF14494 DUF4436: Domain of un 29.1 85 0.0018 30.1 4.5 47 88-136 156-202 (256)
26 PF11241 DUF3043: Protein of u 26.2 1.2E+02 0.0026 27.4 4.7 17 84-100 48-64 (170)
27 PF11694 DUF3290: Protein of u 25.8 2.5E+02 0.0054 24.6 6.5 17 112-128 23-39 (149)
28 PRK12652 putative monovalent c 24.9 1.8E+02 0.0038 29.2 6.1 20 124-146 180-199 (357)
29 PF10856 DUF2678: Protein of u 24.8 1.3E+02 0.0028 25.6 4.3 26 126-151 81-106 (118)
30 PF12915 DUF3833: Protein of u 24.3 3.5E+02 0.0075 24.3 7.2 48 268-315 28-82 (164)
31 PF13210 DUF4018: Domain of un 24.0 2E+02 0.0043 26.1 5.5 15 114-128 25-39 (192)
32 COG3420 NosD Nitrous oxidase a 23.8 5.2E+02 0.011 26.2 8.9 48 250-298 239-287 (408)
33 PF01102 Glycophorin_A: Glycop 23.8 62 0.0013 27.6 2.2 30 99-128 59-89 (122)
34 PHA03105 EEV glycoprotein; Pro 23.6 68 0.0015 28.8 2.5 17 105-121 7-23 (188)
35 PF11421 Synthase_beta: ATP sy 20.7 16 0.00036 26.1 -1.5 21 12-32 5-25 (49)
36 COG2322 Predicted membrane pro 20.3 2.1E+02 0.0045 26.0 4.9 52 93-144 32-83 (177)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.97 E-value=1.9e-31 Score=280.47 Aligned_cols=156 Identities=28% Similarity=0.509 Sum_probs=138.5
Q ss_pred cccCCCCCeEEecccccchhhhhhhhhccceeeeEEEEecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeE
Q 019932 174 SCRNQPKPIQWFIGEANSSLKQRNEKEKKKIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGY 253 (334)
Q Consensus 174 ~~~~~~~~i~~~~Ge~~~g~~~~g~~~~g~~~G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~ 253 (334)
+..++.+...|.+|..|.|. |.+++++|.|++.|+||..|+|+|.+|++||.|++++++|..|+|+|++|++||.
T Consensus 18 g~~hG~G~~~~~DG~~YeGe-----w~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~YeG~w~~gkkhG~ 92 (765)
T PLN03185 18 NVPEGPGKYLWSDGCMYEGE-----WRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGL 92 (765)
T ss_pred CccccceEEEECCCCEEEEE-----EECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEEEEEeCCcccce
Confidence 35667777777777777655 5568999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEEeeeeeeeEEEEEcCCCEEEEEEECCeEeeeEEEEEcCCCEEEEEEeCCeEeeeEEEEEcCCcEe
Q 019932 254 GIESWARGSRYKGQYRQGLRHGYGVYRFYTGDSYAGQWCNGQSHGIGVQTCADGSSYVGEFKCGVKHGLGFYHFRYNFKF 333 (334)
Q Consensus 254 G~~~~~nG~~YeG~fkng~~~G~G~~y~~nG~~yeG~~knG~~~G~G~~~~~dG~~yeG~fknGk~~G~G~~~~~nG~~Y 333 (334)
|+++|+||.+|+|+|++|+++|.|++.++||.+|+|+|++|++||.|+++++||.+|+|+|.+|++||.|+++++||.+|
T Consensus 93 G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG~G~y~~~DG~~Y 172 (765)
T PLN03185 93 GYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTWSDGGCY 172 (765)
T ss_pred eEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCcceeeEEEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C
Q 019932 334 R 334 (334)
Q Consensus 334 e 334 (334)
+
T Consensus 173 ~ 173 (765)
T PLN03185 173 V 173 (765)
T ss_pred E
Confidence 4
No 2
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.97 E-value=4.6e-31 Score=277.61 Aligned_cols=148 Identities=30% Similarity=0.557 Sum_probs=141.6
Q ss_pred eEEecccccchhhhhhhhhccceeeeEEEEecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeEEEEEEcCC
Q 019932 182 IQWFIGEANSSLKQRNEKEKKKIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWARG 261 (334)
Q Consensus 182 i~~~~Ge~~~g~~~~g~~~~g~~~G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~nG 261 (334)
+.+..|+.|.|. |.++.++|.|++.|+||.+|+|+|.+|++||.|++.|++|..|+|+|++|++||.|++++++|
T Consensus 3 ~~~~nGd~Y~Ge-----~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G 77 (765)
T PLN03185 3 LVLSNGDFYSGS-----LLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDG 77 (765)
T ss_pred EEecCCCEEEEE-----EECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCC
Confidence 456677777765 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeeeeeeeEEEEEcCCCEEEEEEECCeEeeeEEEEEcCCCEEEEEEeCCeEeeeEEEEEcCCcEeC
Q 019932 262 SRYKGQYRQGLRHGYGVYRFYTGDSYAGQWCNGQSHGIGVQTCADGSSYVGEFKCGVKHGLGFYHFRYNFKFR 334 (334)
Q Consensus 262 ~~YeG~fkng~~~G~G~~y~~nG~~yeG~~knG~~~G~G~~~~~dG~~yeG~fknGk~~G~G~~~~~nG~~Ye 334 (334)
.+|+|+|++|++||.|+++++||.+|+|+|++|++||.|++.++||.+|+|+|++|++||.|+++++||+.|+
T Consensus 78 ~~YeG~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~Ye 150 (765)
T PLN03185 78 TTYKGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYE 150 (765)
T ss_pred CEEEEEEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995
No 3
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=2.2e-18 Score=146.26 Aligned_cols=124 Identities=27% Similarity=0.407 Sum_probs=113.0
Q ss_pred hhccceeeeEEEEecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeEEEEEEcCCceEEEEEEeeeeeeeEE
Q 019932 199 KEKKKIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWARGSRYKGQYRQGLRHGYGV 278 (334)
Q Consensus 199 ~~~g~~~G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~nG~~YeG~fkng~~~G~G~ 278 (334)
|..++..+.+++..+++.++.|.+++|+..|.|++.+.+|..|+|.++||+++|.|++.++||++|+|.|++++.+|.|.
T Consensus 15 ~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~~F~g~G~ 94 (139)
T COG4642 15 FVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSGKFRGQGT 94 (139)
T ss_pred EecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCccccceEe
Confidence 44577888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCEEEEEEECCeEeeeEEEEEcCCCEEEEEEeCCeEeee
Q 019932 279 YRFYTGDSYAGQWCNGQSHGIGVQTCADGSSYVGEFKCGVKHGL 322 (334)
Q Consensus 279 ~y~~nG~~yeG~~knG~~~G~G~~~~~dG~~yeG~fknGk~~G~ 322 (334)
+...+|.+|.|.|.+++.+|.|.+..++|.+|+|.|+.+++++.
T Consensus 95 ~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~ 138 (139)
T COG4642 95 RGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKN 138 (139)
T ss_pred eccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecCCC
Confidence 99999999999999999999999999999999999999988765
No 4
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=8.7e-18 Score=142.67 Aligned_cols=121 Identities=31% Similarity=0.559 Sum_probs=118.0
Q ss_pred CCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeEEEEEEcCCceEEEEEEeeeeeeeEEEEEcCCCEEEEEEEC
Q 019932 214 NGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWARGSRYKGQYRQGLRHGYGVYRFYTGDSYAGQWCN 293 (334)
Q Consensus 214 nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~nG~~YeG~fkng~~~G~G~~y~~nG~~yeG~~kn 293 (334)
-+..|++.|..++..|.+++...++.++-|.+++++..|.|...+.+|.+|+|.++|++++|.|++.++||+.|+|.|++
T Consensus 7 ~g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s 86 (139)
T COG4642 7 FGLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNS 86 (139)
T ss_pred hheeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeeeEEEEEcCCCEEEEEEeCCeEeeeEEEEEcCCcEeC
Q 019932 294 GQSHGIGVQTCADGSSYVGEFKCGVKHGLGFYHFRYNFKFR 334 (334)
Q Consensus 294 G~~~G~G~~~~~dG~~yeG~fknGk~~G~G~~~~~nG~~Ye 334 (334)
++.+|.|+....+|-+|+|.|.+|+..|.|.+..++|.+|+
T Consensus 87 ~~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~ 127 (139)
T COG4642 87 GKFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYT 127 (139)
T ss_pred ccccceEeeccccCCEEeeeecccccCCceeEEecCCcEEe
Confidence 99999999999999999999999999999999999999985
No 5
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.66 E-value=1.1e-16 Score=162.16 Aligned_cols=150 Identities=40% Similarity=0.741 Sum_probs=129.4
Q ss_pred CCeEEecccccchhhhhhhhhccceeeeEEEEecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeEEEEEEc
Q 019932 180 KPIQWFIGEANSSLKQRNEKEKKKIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWA 259 (334)
Q Consensus 180 ~~i~~~~Ge~~~g~~~~g~~~~g~~~G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~ 259 (334)
....++.+..-.+.... .+...|.|...++||++|+|+|.+++++|.|++++++|..|+|.|.++++||+|++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~p 186 (455)
T KOG0231|consen 111 KGLSELLSTDSGGEEGE----EGTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFP 186 (455)
T ss_pred CCccceecCCccccccc----ccccCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEcc
Confidence 45555555543332221 14578899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEee----eeeeeEEEEEcC----------CCEEEEEEEC-CeEeeeEEEEEcCCCEEEEEEeCCeEeeeEE
Q 019932 260 RGSRYKGQYRQG----LRHGYGVYRFYT----------GDSYAGQWCN-GQSHGIGVQTCADGSSYVGEFKCGVKHGLGF 324 (334)
Q Consensus 260 nG~~YeG~fkng----~~~G~G~~y~~n----------G~~yeG~~kn-G~~~G~G~~~~~dG~~yeG~fknGk~~G~G~ 324 (334)
+|.+|+|.|+++ .++|.+.+.+.+ ..+|.++|.+ +..|+.+.+..++|..|.+.|..+..+|.+.
T Consensus 187 dGsk~eg~~~~~~l~~l~~gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~ 266 (455)
T KOG0231|consen 187 DGSKYEGQYKNNILEALRHGKGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAK 266 (455)
T ss_pred CCCEEEEEeecccccccccceEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccc
Confidence 999999999999 899999999985 5689999988 8999999999999888888899999998888
Q ss_pred EEEcCCcEe
Q 019932 325 YHFRYNFKF 333 (334)
Q Consensus 325 ~~~~nG~~Y 333 (334)
.+++|+..|
T Consensus 267 ~~~~~~~~~ 275 (455)
T KOG0231|consen 267 LHFPNGSGY 275 (455)
T ss_pred eeccccccc
Confidence 888888754
No 6
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.54 E-value=4.5e-15 Score=150.41 Aligned_cols=154 Identities=31% Similarity=0.482 Sum_probs=141.4
Q ss_pred cCCCCCeEEecccccchhhhhhhhhccceeeeEEEEecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECC----EEe
Q 019932 176 RNQPKPIQWFIGEANSSLKQRNEKEKKKIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDG----KYD 251 (334)
Q Consensus 176 ~~~~~~i~~~~Ge~~~g~~~~g~~~~g~~~G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknG----k~~ 251 (334)
......+..-.|+.|.+.+ .+++++|.|+.+++||..|+|+|.++++||+|++++++|.+|+|.|+++ ..+
T Consensus 131 ~~g~g~~~~~~g~~Y~G~~-----~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~~l~~l~~ 205 (455)
T KOG0231|consen 131 RSGEGVIELPTGDTYEGEF-----KRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNNILEALRH 205 (455)
T ss_pred cCccceEecCCCCEEEeee-----cCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEeeccccccccc
Confidence 3455667777788887664 4689999999999999999999999999999999999999999999999 899
Q ss_pred eEEEEEEcC----------CceEEEEEEe-eeeeeeEEEEEcCCCEEEEEEECCeEeeeEEEEEcCCCEEEEEEeCCeEe
Q 019932 252 GYGIESWAR----------GSRYKGQYRQ-GLRHGYGVYRFYTGDSYAGQWCNGQSHGIGVQTCADGSSYVGEFKCGVKH 320 (334)
Q Consensus 252 G~G~~~~~n----------G~~YeG~fkn-g~~~G~G~~y~~nG~~yeG~~knG~~~G~G~~~~~dG~~yeG~fknGk~~ 320 (334)
|.+.+.+.| ..+|.++|.+ +..|+.+.+.+.+|..|.+.|..+..+|.+.++++++..|.|.|..+.++
T Consensus 206 gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 285 (455)
T KOG0231|consen 206 GKGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNGSGYVGEFKQDKKH 285 (455)
T ss_pred ceEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceeccccccccCcceecccc
Confidence 999999986 5689999999 99999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCcEeC
Q 019932 321 GLGFYHFRYNFKFR 334 (334)
Q Consensus 321 G~G~~~~~nG~~Ye 334 (334)
|.+.+.+.++..|+
T Consensus 286 g~~~~~~~~~~~~e 299 (455)
T KOG0231|consen 286 GGGQFLFLNGSEYE 299 (455)
T ss_pred Ccceeeeccccccc
Confidence 99999999887764
No 7
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=9.6e-11 Score=109.14 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=116.7
Q ss_pred cceeeeEEEEecCCCE-EEEEEECCEEeeeEEEEEccCcEE-EEEEECCEEeeEEEEEEcCCc-eEEEEEEeeeeeeeEE
Q 019932 202 KKIIREGVEFYSNGDF-YEGEFHKGKSNGSGVYNFFVNGRY-EGEWIDGKYDGYGIESWARGS-RYKGQYRQGLRHGYGV 278 (334)
Q Consensus 202 g~~~G~G~~~y~nG~~-YeG~f~nGk~~G~G~~~~~~G~~Y-eG~wknGk~~G~G~~~~~nG~-~YeG~fkng~~~G~G~ 278 (334)
...+|.-..+++||.. ..-.++||+++|....++++|... +-.|+||+.+|..+.+|+||. .++..|+++.++|...
T Consensus 83 ~~~~g~~~~~~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k 162 (230)
T COG2849 83 TPFTGIVEKYYENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAK 162 (230)
T ss_pred cCCcceeeEeecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEE
Confidence 3456777778888888 788899999999999999999864 788999999999999999999 6899999999899999
Q ss_pred EEEcCCC-EEEEEEECCeEeeeEEEEEcCCC-EEEEEEeCCeEeeeEEEEEcCCcE
Q 019932 279 YRFYTGD-SYAGQWCNGQSHGIGVQTCADGS-SYVGEFKCGVKHGLGFYHFRYNFK 332 (334)
Q Consensus 279 ~y~~nG~-~yeG~~knG~~~G~G~~~~~dG~-~yeG~fknGk~~G~G~~~~~nG~~ 332 (334)
.||+||. ..+-.++||.++|.-+.|+++|. ..+..|+||+++|.-+.+..+|.+
T Consensus 163 ~yy~nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~ 218 (230)
T COG2849 163 TYYENGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKL 218 (230)
T ss_pred EEcCCCcEEEeecccCCcccceEEEEccCCCEeEEEEecCCcccccEEEEecCCCE
Confidence 9999999 78999999999999999999999 488999999999999998888765
No 8
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.13 E-value=1e-09 Score=102.29 Aligned_cols=122 Identities=21% Similarity=0.294 Sum_probs=112.8
Q ss_pred hhhccceeeeEEEEecCCCEE-EEEEECCEEeeeEEEEEccCc-EEEEEEECCEEeeEEEEEEcCCc-eEEEEEEeeeee
Q 019932 198 EKEKKKIIREGVEFYSNGDFY-EGEFHKGKSNGSGVYNFFVNG-RYEGEWIDGKYDGYGIESWARGS-RYKGQYRQGLRH 274 (334)
Q Consensus 198 ~~~~g~~~G~G~~~y~nG~~Y-eG~f~nGk~~G~G~~~~~~G~-~YeG~wknGk~~G~G~~~~~nG~-~YeG~fkng~~~ 274 (334)
.+++++++|....+|+||.+. +-.|++|+.+|.-+.+|++|. .++..|++++++|..+.||+||. ..+-.|+||.++
T Consensus 103 ~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~knG~~~ 182 (230)
T COG2849 103 YYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKNGKKN 182 (230)
T ss_pred EecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccCCccc
Confidence 478999999999999999994 888999999999999999999 57999999999999999999999 688999999999
Q ss_pred eeEEEEEcCCC-EEEEEEECCeEeeeEEEEEcCCCE-EEEEEeCCeE
Q 019932 275 GYGVYRFYTGD-SYAGQWCNGQSHGIGVQTCADGSS-YVGEFKCGVK 319 (334)
Q Consensus 275 G~G~~y~~nG~-~yeG~~knG~~~G~G~~~~~dG~~-yeG~fknGk~ 319 (334)
|.-..|++||. ..+..|+||.++|.-+.++..|.+ -+..+++|+.
T Consensus 183 G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~i~~~~y~~g~~ 229 (230)
T COG2849 183 GVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKLIKETLYKNGKE 229 (230)
T ss_pred ceEEEEccCCCEeEEEEecCCcccccEEEEecCCCEEEEEEeeCCcC
Confidence 99999999999 899999999999999999999984 6788888763
No 9
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.34 E-value=0.0002 Score=42.83 Aligned_cols=21 Identities=52% Similarity=1.222 Sum_probs=9.3
Q ss_pred EEEEEECCEEeeEEEEEEcCC
Q 019932 241 YEGEWIDGKYDGYGIESWARG 261 (334)
Q Consensus 241 YeG~wknGk~~G~G~~~~~nG 261 (334)
|+|.|++|+++|.|+++++||
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G 21 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDG 21 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS
T ss_pred CEEEEEECcccccEEEEeCCC
Confidence 344444444444444444444
No 10
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.27 E-value=0.00025 Score=42.38 Aligned_cols=22 Identities=50% Similarity=0.836 Sum_probs=10.2
Q ss_pred EEEEEeCCeEeeeEEEEEcCCc
Q 019932 310 YVGEFKCGVKHGLGFYHFRYNF 331 (334)
Q Consensus 310 yeG~fknGk~~G~G~~~~~nG~ 331 (334)
|+|.|.+|++||.|+++++||.
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 4455555555555555555543
No 11
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.17 E-value=0.00072 Score=42.14 Aligned_cols=20 Identities=50% Similarity=1.067 Sum_probs=9.8
Q ss_pred EEEEEECCEEeeEEEEEEcC
Q 019932 241 YEGEWIDGKYDGYGIESWAR 260 (334)
Q Consensus 241 YeG~wknGk~~G~G~~~~~n 260 (334)
|+|+|++|++||.|++.|+|
T Consensus 3 Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 3 YEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred EEEEEECCeEEeeEEEEecc
Confidence 44445555555555444443
No 12
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.16 E-value=0.00074 Score=42.08 Aligned_cols=19 Identities=53% Similarity=1.179 Sum_probs=9.4
Q ss_pred EEEEEEeeeeeeeEEEEEc
Q 019932 264 YKGQYRQGLRHGYGVYRFY 282 (334)
Q Consensus 264 YeG~fkng~~~G~G~~y~~ 282 (334)
|+|+|++|++||.|++.++
T Consensus 3 Y~G~w~~g~~hG~G~~~~~ 21 (26)
T smart00698 3 YEGEWRNGKRHGRGVYTYA 21 (26)
T ss_pred EEEEEECCeEEeeEEEEec
Confidence 4455555555555554444
No 13
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=89.00 E-value=6.2 Score=35.79 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=4.4
Q ss_pred eeeEEEEEccC
Q 019932 228 NGSGVYNFFVN 238 (334)
Q Consensus 228 ~G~G~~~~~~G 238 (334)
+|.-.|+|.+.
T Consensus 45 Dg~v~Y~ya~~ 55 (179)
T PF07202_consen 45 DGRVIYYYADA 55 (179)
T ss_pred CCcEEEEEeCC
Confidence 33334444443
No 14
>PF14977 FAM194: FAM194 protein
Probab=83.00 E-value=6.9 Score=36.34 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=45.7
Q ss_pred EEccCcEEEEEEECCEEeeEEEEEEcCCceEEEEEEeeeeeeeEEEEEcCCC--EEEEEEECCeEeeeEEEEEcCCCE
Q 019932 234 NFFVNGRYEGEWIDGKYDGYGIESWARGSRYKGQYRQGLRHGYGVYRFYTGD--SYAGQWCNGQSHGIGVQTCADGSS 309 (334)
Q Consensus 234 ~~~~G~~YeG~wknGk~~G~G~~~~~nG~~YeG~fkng~~~G~G~~y~~nG~--~yeG~~knG~~~G~G~~~~~dG~~ 309 (334)
+|++|.++--.| .+|-|..+||+|++-.-.... ++.+.-...+.|.. ..-+-|. .+|.|.+|+++|.+
T Consensus 10 ~Y~~g~~f~~~f----~DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd---~~G~g~~y~~~g~~ 79 (208)
T PF14977_consen 10 YYKNGRKFHYMF----PDGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFD---SSGHGTCYHPNGNI 79 (208)
T ss_pred eCCCCcEEEEEc----CCCCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEc---CCCCEEEEcCCCCE
Confidence 466666653333 467788899999876666655 55556666666655 3555554 36889999999874
No 15
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=79.55 E-value=11 Score=34.27 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=7.7
Q ss_pred eeeeEEEEEcCCC
Q 019932 273 RHGYGVYRFYTGD 285 (334)
Q Consensus 273 ~~G~G~~y~~nG~ 285 (334)
.+|.-...++||.
T Consensus 117 ~nG~k~i~~pnGq 129 (179)
T PF07202_consen 117 PNGDKTITFPNGQ 129 (179)
T ss_pred CCCcEEEEeCCCc
Confidence 4555556666665
No 16
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=75.72 E-value=4.8 Score=22.97 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=3.8
Q ss_pred eEEEEEcCCC
Q 019932 276 YGVYRFYTGD 285 (334)
Q Consensus 276 ~G~~y~~nG~ 285 (334)
.-+.+++||.
T Consensus 4 ~~~~yy~nG~ 13 (22)
T PF07661_consen 4 EWKFYYENGK 13 (22)
T ss_pred eEEEEeCCCC
Confidence 3333333333
No 17
>PF14977 FAM194: FAM194 protein
Probab=73.53 E-value=26 Score=32.61 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=26.9
Q ss_pred EeeeEEEEEccCcEEEEEEECCEEeeEEEEEEcCCc--eEEEEEEeeeeeeeEEEEEcCCC
Q 019932 227 SNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWARGS--RYKGQYRQGLRHGYGVYRFYTGD 285 (334)
Q Consensus 227 ~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~nG~--~YeG~fkng~~~G~G~~y~~nG~ 285 (334)
.+|.|..+||+|..-.-.... +..+.....+.|.. ...+.|. .+|.|..|+++|.
T Consensus 22 ~DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd---~~G~g~~y~~~g~ 78 (208)
T PF14977_consen 22 PDGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFD---SSGHGTCYHPNGN 78 (208)
T ss_pred CCCCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEc---CCCCEEEEcCCCC
Confidence 345556666666654333333 33334444454443 2333333 3566666666665
No 18
>PF14181 YqfQ: YqfQ-like protein
Probab=57.13 E-value=2.7 Score=37.53 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred ccccCccccccccccccccc
Q 019932 17 LLRSSPTIRSSIHSLSLSSV 36 (334)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (334)
|+|+.|.|---..+|+++.-
T Consensus 81 LVrNLPam~kiyr~l~s~~~ 100 (161)
T PF14181_consen 81 LVRNLPAMWKIYRGLKSSDD 100 (161)
T ss_pred HHHhhHHHHHHHHccCCCCc
Confidence 78899998888888888544
No 19
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=55.17 E-value=23 Score=24.46 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhcccccccchHHHHHHHHHH
Q 019932 114 FTLISLFLLVYFLNLKREEIPTSENLLLALIFI 146 (334)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~t~~~lLl~lif~ 146 (334)
+..+++++|+|.+++ --+-.-++|..++.+
T Consensus 4 la~illvlliyv~~k---vayvalkilai~lii 33 (44)
T PF13153_consen 4 LAIILLVLLIYVFFK---VAYVALKILAILLII 33 (44)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345566777788877 224455555544333
No 20
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=53.18 E-value=1.7e+02 Score=28.15 Aligned_cols=90 Identities=19% Similarity=0.269 Sum_probs=53.5
Q ss_pred eeEEEEecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeEEEEEEcCCceEEEEEEeeeeeeeEEEEEcCCC
Q 019932 206 REGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWARGSRYKGQYRQGLRHGYGVYRFYTGD 285 (334)
Q Consensus 206 G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~nG~~YeG~fkng~~~G~G~~y~~nG~ 285 (334)
=+|..+..+|.+||+.=..|+ .-..++-...|....-.-.+...=|.|...+.| ..|.=+|+++ .+..|.++--
T Consensus 47 TQGL~~~~~g~LyESTG~yG~-S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~----~~f~yd~~tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQ-SSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEG----TGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTE-EEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSS----EEEEEETTTT
T ss_pred CccEEecCCCEEEEeCCCCCc-EEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCC----eEEEEccccc
Confidence 356667788999999988774 345666667777766666666677888777744 6788887765 3444444433
Q ss_pred EEEEEEECCeEeeeEEE
Q 019932 286 SYAGQWCNGQSHGIGVQ 302 (334)
Q Consensus 286 ~yeG~~knG~~~G~G~~ 302 (334)
.-.++|.-. .+|.|..
T Consensus 121 ~~~~~~~y~-~EGWGLt 136 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT 136 (264)
T ss_dssp EEEEEEE-S-SS--EEE
T ss_pred eEEEEEecC-CcceEEE
Confidence 444555432 2555543
No 21
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=48.22 E-value=12 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.499 Sum_probs=17.3
Q ss_pred cccccccCccccccceeehhhhHHH
Q 019932 90 FHFQRRTGSGRFVVPVIAMASLSFF 114 (334)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~ 114 (334)
|-+|+.+|.-|++.++.++++++.+
T Consensus 16 f~~~~~~~~~rv~l~it~lL~~~~~ 40 (237)
T PF02932_consen 16 FWLPPESGPERVTLGITTLLAMTVF 40 (237)
T ss_dssp HHHHHHSTHHHHHHHHHHHHHHHHH
T ss_pred eEeCccccccccccchhHHHHHHHH
Confidence 4467777777887777777666554
No 22
>PHA03030 hypothetical protein; Provisional
Probab=44.76 E-value=16 Score=30.40 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHhhhc
Q 019932 110 SLSFFTLISLFLLVYFLNL 128 (334)
Q Consensus 110 ~~~f~~~~~~~~l~~~~~~ 128 (334)
|+.++..++|+||+.||++
T Consensus 3 ci~~ili~lfifl~iffYI 21 (122)
T PHA03030 3 CIFLILIFLFIFLFIFFYI 21 (122)
T ss_pred eehHHHHHHHHHHHHHHHh
Confidence 4444455567777777776
No 23
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=35.69 E-value=24 Score=25.05 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHHH
Q 019932 134 PTSENLLLALIFIA 147 (334)
Q Consensus 134 ~t~~~lLl~lif~~ 147 (334)
.||++.|+.|+|+-
T Consensus 1 ftlKKsllLlfflG 14 (46)
T PF03032_consen 1 FTLKKSLLLLFFLG 14 (46)
T ss_pred CcchHHHHHHHHHH
Confidence 37888887777763
No 24
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.18 E-value=22 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.638 Sum_probs=17.0
Q ss_pred eeehhhhHHHHHHHHHHHHHhhhccccc
Q 019932 105 VIAMASLSFFTLISLFLLVYFLNLKREE 132 (334)
Q Consensus 105 ~~~~~~~~f~~~~~~~~l~~~~~~~~~~ 132 (334)
.+.++-++|+.++++|.++++|++-|+.
T Consensus 63 iili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 63 IILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred chHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 4455555566666666667777775554
No 25
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=29.13 E-value=85 Score=30.06 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=25.6
Q ss_pred CccccccccCccccccceeehhhhHHHHHHHHHHHHHhhhcccccccch
Q 019932 88 SNFHFQRRTGSGRFVVPVIAMASLSFFTLISLFLLVYFLNLKREEIPTS 136 (334)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~t~ 136 (334)
-.+++.|..+.+-|.. ++++-+.-|+++.++.-+.+++.+|...+.+
T Consensus 156 ~~i~l~Rs~~~~~F~~--~i~~vm~~L~~~al~~ai~~~~~rr~~~~~~ 202 (256)
T PF14494_consen 156 VDITLKRSRGVLFFAL--FICLVMWALATLALFVAIQVLRRRRKFEPPM 202 (256)
T ss_pred EEEEEEccCcceehHH--HHHHHHHHHHHHHHHHHHHHHhCccccccch
Confidence 4567777666666654 4444444455555555455555555544443
No 26
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=26.19 E-value=1.2e+02 Score=27.35 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=8.9
Q ss_pred CCCCCccccccccCccc
Q 019932 84 PPGSSNFHFQRRTGSGR 100 (334)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (334)
..|.-+.-.||..|--|
T Consensus 48 ~~GDeryLp~RDrGP~R 64 (170)
T PF11241_consen 48 MTGDERYLPPRDRGPVR 64 (170)
T ss_pred HcChhhcCCcccccchh
Confidence 34544555566666544
No 27
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.77 E-value=2.5e+02 Score=24.64 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhhhc
Q 019932 112 SFFTLISLFLLVYFLNL 128 (334)
Q Consensus 112 ~f~~~~~~~~l~~~~~~ 128 (334)
+++.+++++++.+.++.
T Consensus 23 i~~ll~~l~~~~~~Y~r 39 (149)
T PF11694_consen 23 IIILLLVLIFFFIKYLR 39 (149)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 28
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=24.90 E-value=1.8e+02 Score=29.20 Aligned_cols=20 Identities=20% Similarity=0.022 Sum_probs=11.8
Q ss_pred HhhhcccccccchHHHHHHHHHH
Q 019932 124 YFLNLKREEIPTSENLLLALIFI 146 (334)
Q Consensus 124 ~~~~~~~~~~~t~~~lLl~lif~ 146 (334)
++++.. .++..+|++++++.
T Consensus 180 Wlllsg---~~s~~~l~~G~v~~ 199 (357)
T PRK12652 180 YLLLGD---PLYWFDLLTGAVTA 199 (357)
T ss_pred HHHHcC---cCCHHHHHHHHHHH
Confidence 555552 25677777766554
No 29
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=24.76 E-value=1.3e+02 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=13.4
Q ss_pred hhcccccccchHHHHHHHHHHHHHHh
Q 019932 126 LNLKREEIPTSENLLLALIFIAITLF 151 (334)
Q Consensus 126 ~~~~~~~~~t~~~lLl~lif~~~~l~ 151 (334)
.+..-|--|.-.+|+..+.+.++.+.
T Consensus 81 WYR~gdl~Pkfr~li~~~~~~ivllc 106 (118)
T PF10856_consen 81 WYRQGDLDPKFRYLIYYNCFSIVLLC 106 (118)
T ss_pred ehhcCCCChhHHHHHHHHHHHHHHHH
Confidence 33344444566666655555544443
No 30
>PF12915 DUF3833: Protein of unknown function (DUF3833); InterPro: IPR024409 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=24.32 E-value=3.5e+02 Score=24.28 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEeeeeeeeEEEEEcCCCE-------EEEEEECCeEeeeEEEEEcCCCEEEEEEe
Q 019932 268 YRQGLRHGYGVYRFYTGDS-------YAGQWCNGQSHGIGVQTCADGSSYVGEFK 315 (334)
Q Consensus 268 fkng~~~G~G~~y~~nG~~-------yeG~~knG~~~G~G~~~~~dG~~yeG~fk 315 (334)
|-+|....+|++.-..|.+ ..|.|..+...=.-.++|.||....=.|.
T Consensus 28 fF~G~~~A~G~~~dr~G~v~rrF~v~i~g~w~g~~~tL~E~F~y~DGe~q~R~W~ 82 (164)
T PF12915_consen 28 FFNGKLVAWGMFQDRSGKVTRRFTVDIDGSWDGNTGTLDEDFVYDDGETQTRVWT 82 (164)
T ss_pred HCCCcEEEEEEEECCCCCEEEEEEEEEEEEEECCEEEEEEEEEECCCCEEEEEEE
No 31
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=23.98 E-value=2e+02 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhc
Q 019932 114 FTLISLFLLVYFLNL 128 (334)
Q Consensus 114 ~~~~~~~~l~~~~~~ 128 (334)
++++.-|.||+|||+
T Consensus 25 FSl~gtI~lPlFFfI 39 (192)
T PF13210_consen 25 FSLFGTIMLPLFFFI 39 (192)
T ss_pred HHHHHHHHHHHHHhe
Confidence 556666777888877
No 32
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=23.80 E-value=5.2e+02 Score=26.21 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=27.5
Q ss_pred EeeEEEEEEcCCceEEEEEEeeeeeeeEEEEEcCCC-EEEEEEECCeEee
Q 019932 250 YDGYGIESWARGSRYKGQYRQGLRHGYGVYRFYTGD-SYAGQWCNGQSHG 298 (334)
Q Consensus 250 ~~G~G~~~~~nG~~YeG~fkng~~~G~G~~y~~nG~-~yeG~~knG~~~G 298 (334)
-||.+..| .+-+...|+.+-+..+|...|+|.+.. .+.++-..|..-|
T Consensus 239 d~Gillny-a~~s~i~~N~v~g~~~Gk~vfiyn~~~~ki~~n~feg~~iG 287 (408)
T COG3420 239 DHGILLNY-ANYSRIVGNRVAGNVSGKCVFIYNANYNKIRGNSFEGCAIG 287 (408)
T ss_pred ccceeeee-eeccceeccEEEecccceEEEEeccchhhhccceeecceEE
Confidence 34444433 333566777777778888888776543 4444444444444
No 33
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.79 E-value=62 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=12.5
Q ss_pred cccccceeehhhh-HHHHHHHHHHHHHhhhc
Q 019932 99 GRFVVPVIAMASL-SFFTLISLFLLVYFLNL 128 (334)
Q Consensus 99 ~~~~~~~~~~~~~-~f~~~~~~~~l~~~~~~ 128 (334)
.+|..|++++..| +-+.++++|+|++|+.+
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHH
Confidence 3555554332222 22444444454444444
No 34
>PHA03105 EEV glycoprotein; Provisional
Probab=23.56 E-value=68 Score=28.76 Aligned_cols=17 Identities=35% Similarity=0.549 Sum_probs=11.7
Q ss_pred eeehhhhHHHHHHHHHH
Q 019932 105 VIAMASLSFFTLISLFL 121 (334)
Q Consensus 105 ~~~~~~~~f~~~~~~~~ 121 (334)
+.++++|+|++|++.||
T Consensus 7 ~Y~vv~~SfiiLi~Yll 23 (188)
T PHA03105 7 VYVVVPLSFIVLILYIF 23 (188)
T ss_pred EeeehHHHHHHHHHHHH
Confidence 56777788776666654
No 35
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=20.67 E-value=16 Score=26.11 Aligned_cols=21 Identities=48% Similarity=0.366 Sum_probs=13.0
Q ss_pred eecccccccCccccccccccc
Q 019932 12 RTQSWLLRSSPTIRSSIHSLS 32 (334)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (334)
|.-||||||+.-.+.|-.+|+
T Consensus 5 R~lSSlLRSssrr~~sks~l~ 25 (49)
T PF11421_consen 5 RLLSSLLRSSSRRSASKSPLS 25 (49)
T ss_dssp HHHHHHHHHHHTTSSSST-GG
T ss_pred HHHHHHHHHHhcccccccccc
Confidence 455999998766655533343
No 36
>COG2322 Predicted membrane protein [Function unknown]
Probab=20.30 E-value=2.1e+02 Score=25.96 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=32.9
Q ss_pred ccccCccccccceeehhhhHHHHHHHHHHHHHhhhcccccccchHHHHHHHH
Q 019932 93 QRRTGSGRFVVPVIAMASLSFFTLISLFLLVYFLNLKREEIPTSENLLLALI 144 (334)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~t~~~lLl~li 144 (334)
|.-++..++.-+++.+.+..+-++..+++|.=+.+++|..+-..+..|+.-+
T Consensus 32 P~g~~~~~~~v~i~p~lnai~~~~s~~~llag~~~Ikrg~i~~Hk~aMltA~ 83 (177)
T COG2322 32 PAGPQADAFNVEILPMLNAIFNSLSFIFLLAGWRLIKRGNIEKHKRAMLTAF 83 (177)
T ss_pred CCCCCCCccCchhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445666666667777777777777666666666666666555666654443
Done!