Query 019932
Match_columns 334
No_of_seqs 248 out of 1781
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 100.0 2.1E-28 7.1E-33 232.2 15.7 123 211-333 1-130 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.9 3.4E-26 1.1E-30 216.9 15.5 131 184-319 2-139 (293)
3 2f69_A Histone-lysine N-methyl 99.0 1.2E-10 4.2E-15 109.0 5.1 55 243-297 3-60 (261)
4 2f69_A Histone-lysine N-methyl 99.0 1.7E-10 5.9E-15 108.0 4.6 55 219-273 2-59 (261)
5 2bp3_S Platelet glycoprotein I 26.8 16 0.00053 21.6 0.3 9 20-28 4-12 (26)
6 2l6w_A Beta-type platelet-deri 23.5 25 0.00087 23.2 0.0 12 118-129 24-35 (39)
7 2eqj_A Metal-response element- 17.8 95 0.0032 22.7 3.0 39 209-247 21-60 (66)
8 2ww5_A LYTC autolysin, 1,4-bet 16.4 11 0.00039 37.2 -3.1 15 209-223 69-83 (468)
9 2jwa_A Receptor tyrosine-prote 16.2 50 0.0017 22.3 1.1 17 116-132 23-39 (44)
10 2kix_A BM2 protein; channel, t 15.8 1.9E+02 0.0065 17.8 3.5 26 138-163 6-31 (33)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.96 E-value=2.1e-28 Score=232.15 Aligned_cols=123 Identities=26% Similarity=0.408 Sum_probs=101.2
Q ss_pred EecCCCEEEEEEECCEEeeeEEEEEccCcEEEEEEECCEEeeEEEEEEcCCc-eEEEEEEeeeeeeeEEEEEcCCCEEEE
Q 019932 211 FYSNGDFYEGEFHKGKSNGSGVYNFFVNGRYEGEWIDGKYDGYGIESWARGS-RYKGQYRQGLRHGYGVYRFYTGDSYAG 289 (334)
Q Consensus 211 ~y~nG~~YeG~f~nGk~~G~G~~~~~~G~~YeG~wknGk~~G~G~~~~~nG~-~YeG~fkng~~~G~G~~y~~nG~~yeG 289 (334)
+|+||.+|+|+|++|++||.|+++++||.+|+|+|++|++||.|+++|+||. +|+|+|++|++||.|+++++||.+|+|
T Consensus 1 ~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G 80 (293)
T 1h3i_A 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80 (293)
T ss_dssp CCSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEE
T ss_pred CcCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEE
Confidence 3678888888888888888888888888888888888888888888888888 788888888888888888888888888
Q ss_pred EEE-CCeEeee-EEEEEcCCC-EEEEEEeCCeEe-eeEEEE--EcCCcEe
Q 019932 290 QWC-NGQSHGI-GVQTCADGS-SYVGEFKCGVKH-GLGFYH--FRYNFKF 333 (334)
Q Consensus 290 ~~k-nG~~~G~-G~~~~~dG~-~yeG~fknGk~~-G~G~~~--~~nG~~Y 333 (334)
+|+ ||++||. |+++++||. .|+|.|++|++| |.|+++ ++||+.+
T Consensus 81 ~~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~ 130 (293)
T 1h3i_A 81 EVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPH 130 (293)
T ss_dssp ECCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCE
T ss_pred EEeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceE
Confidence 888 8888888 888888888 488888888888 888877 6777653
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=3.4e-26 Score=216.95 Aligned_cols=131 Identities=17% Similarity=0.253 Sum_probs=122.3
Q ss_pred EecccccchhhhhhhhhccceeeeEEEEecCCCEEEEEEECCEEeeeEEEEEccCc-EEEEEEECCEEeeEEEEEEcCCc
Q 019932 184 WFIGEANSSLKQRNEKEKKKIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNFFVNG-RYEGEWIDGKYDGYGIESWARGS 262 (334)
Q Consensus 184 ~~~Ge~~~g~~~~g~~~~g~~~G~G~~~y~nG~~YeG~f~nGk~~G~G~~~~~~G~-~YeG~wknGk~~G~G~~~~~nG~ 262 (334)
|.+|+.|.+. |++++++|.|+++|+||.+|+|+|++|++||.|+++++||. +|+|+|++|++||.|+++|+||.
T Consensus 2 ~~~G~~Y~G~-----~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~ 76 (293)
T 1h3i_A 2 FFDGSTLEGY-----YVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGG 76 (293)
T ss_dssp CSSSCCCCEE-----EETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSC
T ss_pred cCCCCEEEEE-----EECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCC
Confidence 3455555544 56799999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEEEEEE-eeeeeee-EEEEEcCCC-EEEEEEECCeEe-eeEEEE--EcCCCEEEEEEeCCeE
Q 019932 263 RYKGQYR-QGLRHGY-GVYRFYTGD-SYAGQWCNGQSH-GIGVQT--CADGSSYVGEFKCGVK 319 (334)
Q Consensus 263 ~YeG~fk-ng~~~G~-G~~y~~nG~-~yeG~~knG~~~-G~G~~~--~~dG~~yeG~fknGk~ 319 (334)
+|+|+|+ +|++||. |+++++||. .|+|.|+||++| |.++++ +++|..+.|.|.++++
T Consensus 77 ~y~G~~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g~~ 139 (293)
T 1h3i_A 77 SLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV 139 (293)
T ss_dssp EEEEECCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSCCE
T ss_pred EEEEEEeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCCce
Confidence 9999999 9999999 999999999 699999999999 999999 8999999999998876
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.04 E-value=1.2e-10 Score=109.02 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=37.4
Q ss_pred EEEECCEEeeEEEEEEcCCceEEEEEE-eeeeeee-EEEEEcCCCE-EEEEEECCeEe
Q 019932 243 GEWIDGKYDGYGIESWARGSRYKGQYR-QGLRHGY-GVYRFYTGDS-YAGQWCNGQSH 297 (334)
Q Consensus 243 G~wknGk~~G~G~~~~~nG~~YeG~fk-ng~~~G~-G~~y~~nG~~-yeG~~knG~~~ 297 (334)
|+|++|++||.|+++|+||.+|+|+|. +|.++|. |+|+|+||.+ |+|+|++|.+.
T Consensus 3 g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp --------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred ceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 678888888888888888888888888 8888888 8888888876 78888877763
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.00 E-value=1.7e-10 Score=108.03 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred EEEEECCEEeeeEEEEEccCcEEEEEEE-CCEEeeE-EEEEEcCCce-EEEEEEeeee
Q 019932 219 EGEFHKGKSNGSGVYNFFVNGRYEGEWI-DGKYDGY-GIESWARGSR-YKGQYRQGLR 273 (334)
Q Consensus 219 eG~f~nGk~~G~G~~~~~~G~~YeG~wk-nGk~~G~-G~~~~~nG~~-YeG~fkng~~ 273 (334)
.|+|++|++||.|.++|+||.+|+|+|+ +|.++|. |+++|+||.+ |+|.|++|.+
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp ---------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred CceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 3889999999999999999999999999 9999999 9999999998 9999999876
No 5
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=26.80 E-value=16 Score=21.63 Aligned_cols=9 Identities=67% Similarity=0.855 Sum_probs=7.4
Q ss_pred cCccccccc
Q 019932 20 SSPTIRSSI 28 (334)
Q Consensus 20 ~~~~~~~~~ 28 (334)
|.||.|||+
T Consensus 4 slptfrssl 12 (26)
T 2bp3_S 4 SLPTFRSSL 12 (26)
T ss_pred cccchhheE
Confidence 679999984
No 6
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=23.47 E-value=25 Score=23.16 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=4.7
Q ss_pred HHHHHHHhhhcc
Q 019932 118 SLFLLVYFLNLK 129 (334)
Q Consensus 118 ~~~~l~~~~~~~ 129 (334)
++|.|++....+
T Consensus 24 sLIiLi~~w~qK 35 (39)
T 2l6w_A 24 SLIILIMLWQKK 35 (39)
Confidence 333333443333
No 7
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=17.80 E-value=95 Score=22.72 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=28.0
Q ss_pred EEEecCCCEEEEEEECCEE-eeeEEEEEccCcEEEEEEEC
Q 019932 209 VEFYSNGDFYEGEFHKGKS-NGSGVYNFFVNGRYEGEWID 247 (334)
Q Consensus 209 ~~~y~nG~~YeG~f~nGk~-~G~G~~~~~~G~~YeG~wkn 247 (334)
...|.||..|.|..+.=.. .|.....|.|+..+=-.|++
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kd 60 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKD 60 (66)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred EEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeec
Confidence 4567899999999865333 47788888888876555543
No 8
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=16.37 E-value=11 Score=37.17 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=7.7
Q ss_pred EEEecCCCEEEEEEE
Q 019932 209 VEFYSNGDFYEGEFH 223 (334)
Q Consensus 209 ~~~y~nG~~YeG~f~ 223 (334)
.++.+||.+..|.|.
T Consensus 69 yY~~~~G~~~~~~w~ 83 (468)
T 2ww5_A 69 FYINSDGRYSQNEWH 83 (468)
T ss_dssp EEECTTSBBCCSEEE
T ss_pred EEEcCCCCEeEcccc
Confidence 334456665555553
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.23 E-value=50 Score=22.26 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhccccc
Q 019932 116 LISLFLLVYFLNLKREE 132 (334)
Q Consensus 116 ~~~~~~l~~~~~~~~~~ 132 (334)
+++++.|.++++++|+.
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 44555555666665554
No 10
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=15.81 E-value=1.9e+02 Score=17.77 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHH
Q 019932 138 NLLLALIFIAITLFLANKNKRLLKQL 163 (334)
Q Consensus 138 ~lLl~lif~~~~l~f~~~n~~~i~~~ 163 (334)
.+|.+..|+++++-|.+......+|.
T Consensus 6 qilsi~sfilsalhf~awtighlnqi 31 (33)
T 2kix_A 6 QILSISSFILSALHFIAWTIGHLNQI 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Done!