Query 019933
Match_columns 334
No_of_seqs 200 out of 1473
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 2.7E-87 5.8E-92 654.2 21.6 226 88-314 2-244 (361)
2 PLN02237 glyceraldehyde-3-phos 100.0 2.1E-80 4.5E-85 618.3 23.8 229 85-315 71-305 (442)
3 PLN02272 glyceraldehyde-3-phos 100.0 4.4E-79 9.5E-84 607.0 27.4 306 1-314 1-311 (421)
4 COG0057 GapA Glyceraldehyde-3- 100.0 2.8E-79 6.2E-84 590.3 22.4 224 89-315 1-228 (335)
5 PRK07403 glyceraldehyde-3-phos 100.0 1.6E-77 3.4E-82 582.9 22.7 222 90-314 2-229 (337)
6 PTZ00023 glyceraldehyde-3-phos 100.0 2.5E-77 5.4E-82 581.6 23.0 226 88-314 1-230 (337)
7 PRK15425 gapA glyceraldehyde-3 100.0 3.5E-77 7.6E-82 579.4 23.5 224 88-314 1-226 (331)
8 PRK07729 glyceraldehyde-3-phos 100.0 9.7E-77 2.1E-81 578.4 22.7 223 88-313 1-226 (343)
9 PTZ00353 glycosomal glyceralde 100.0 8.1E-76 1.8E-80 571.7 22.8 225 88-314 1-230 (342)
10 PLN03096 glyceraldehyde-3-phos 100.0 1.8E-75 3.8E-80 577.9 23.6 228 85-314 56-287 (395)
11 PRK08289 glyceraldehyde-3-phos 100.0 3.3E-74 7.2E-79 576.0 21.1 238 75-314 113-364 (477)
12 PLN02358 glyceraldehyde-3-phos 100.0 2E-73 4.3E-78 554.7 24.6 226 89-314 5-232 (338)
13 TIGR01534 GAPDH-I glyceraldehy 100.0 3.1E-73 6.8E-78 551.2 22.5 220 91-313 1-226 (327)
14 PRK08955 glyceraldehyde-3-phos 100.0 4.4E-72 9.6E-77 544.5 23.3 223 88-314 1-227 (334)
15 PRK13535 erythrose 4-phosphate 100.0 3.9E-72 8.5E-77 545.2 22.3 222 90-314 2-229 (336)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 2.1E-69 4.5E-74 524.1 22.6 221 91-314 1-227 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.6E-67 3.5E-72 496.2 6.6 210 100-314 1-211 (285)
18 PF00044 Gp_dh_N: Glyceraldehy 100.0 7.7E-52 1.7E-56 363.1 12.5 149 90-239 1-151 (151)
19 TIGR01546 GAPDH-II_archae glyc 100.0 1.8E-48 3.9E-53 379.1 17.6 193 92-311 1-203 (333)
20 smart00846 Gp_dh_N Glyceraldeh 100.0 4.5E-47 9.7E-52 331.6 17.3 148 90-239 1-149 (149)
21 PRK04207 glyceraldehyde-3-phos 100.0 3.5E-38 7.5E-43 307.1 17.4 193 90-311 2-206 (341)
22 PRK14874 aspartate-semialdehyd 100.0 4.6E-28 1E-32 234.9 13.6 182 90-303 2-212 (334)
23 TIGR01296 asd_B aspartate-semi 99.9 6.3E-27 1.4E-31 228.1 13.6 188 91-311 1-224 (339)
24 PRK06901 aspartate-semialdehyd 99.9 1.8E-24 4E-29 209.8 11.1 152 89-271 3-162 (322)
25 PF02800 Gp_dh_C: Glyceraldehy 99.9 3.8E-24 8.3E-29 188.6 5.2 69 244-313 1-70 (157)
26 COG0136 Asd Aspartate-semialde 99.9 1.5E-21 3.4E-26 190.1 12.9 155 90-271 2-165 (334)
27 PRK08664 aspartate-semialdehyd 99.8 2.5E-20 5.5E-25 181.8 13.9 191 88-306 2-216 (349)
28 TIGR01745 asd_gamma aspartate- 99.8 6.9E-21 1.5E-25 188.0 9.8 156 90-272 1-167 (366)
29 PRK06728 aspartate-semialdehyd 99.8 1.8E-19 3.9E-24 177.0 12.6 154 89-271 5-164 (347)
30 TIGR00978 asd_EA aspartate-sem 99.8 2E-18 4.3E-23 168.1 13.2 185 90-300 1-199 (341)
31 PRK06598 aspartate-semialdehyd 99.8 3.2E-18 6.9E-23 169.4 12.2 157 90-272 2-168 (369)
32 PRK08040 putative semialdehyde 99.8 8E-18 1.7E-22 164.7 14.6 152 88-271 3-164 (336)
33 PRK05671 aspartate-semialdehyd 99.7 3E-16 6.5E-21 153.5 14.2 150 90-271 5-163 (336)
34 PLN02383 aspartate semialdehyd 99.7 7E-16 1.5E-20 151.3 13.1 152 88-271 6-171 (344)
35 PRK00436 argC N-acetyl-gamma-g 99.6 1.9E-14 4E-19 140.7 14.5 157 88-271 1-184 (343)
36 PLN02968 Probable N-acetyl-gam 99.6 4.8E-14 1E-18 140.1 14.9 167 76-271 27-219 (381)
37 PRK11863 N-acetyl-gamma-glutam 99.5 5.8E-14 1.3E-18 136.5 12.4 166 88-299 1-176 (313)
38 TIGR01850 argC N-acetyl-gamma- 99.5 8.9E-14 1.9E-18 136.1 11.8 157 90-272 1-185 (346)
39 KOG4777 Aspartate-semialdehyde 99.4 7E-14 1.5E-18 133.0 4.9 184 91-301 5-208 (361)
40 PRK08300 acetaldehyde dehydrog 99.4 4.8E-13 1E-17 129.7 10.4 152 89-269 4-160 (302)
41 TIGR01851 argC_other N-acetyl- 99.3 1E-11 2.2E-16 120.9 11.0 137 90-270 2-146 (310)
42 TIGR03215 ac_ald_DH_ac acetald 99.3 6E-11 1.3E-15 114.3 12.8 151 89-270 1-155 (285)
43 PF01118 Semialdhyde_dh: Semia 98.8 7.2E-09 1.6E-13 86.7 4.8 112 91-228 1-119 (121)
44 COG0002 ArgC Acetylglutamate s 98.1 1.6E-05 3.4E-10 78.9 9.2 141 88-254 1-167 (349)
45 smart00859 Semialdhyde_dh Semi 98.0 1.1E-05 2.4E-10 66.9 6.3 111 91-227 1-120 (122)
46 PRK13301 putative L-aspartate 98.0 4.8E-06 1E-10 80.0 4.5 142 88-268 1-149 (267)
47 PRK13303 L-aspartate dehydroge 97.9 1.4E-05 3E-10 75.8 4.8 92 90-211 2-93 (265)
48 TIGR00036 dapB dihydrodipicoli 97.6 8.7E-05 1.9E-09 70.5 6.1 95 90-208 2-97 (266)
49 TIGR01921 DAP-DH diaminopimela 97.6 9.6E-05 2.1E-09 72.9 6.5 90 89-211 3-92 (324)
50 PRK06270 homoserine dehydrogen 97.6 0.00026 5.6E-09 69.6 8.5 35 88-122 1-44 (341)
51 PRK13302 putative L-aspartate 97.5 0.00037 8E-09 66.5 8.2 87 89-204 6-93 (271)
52 PRK00048 dihydrodipicolinate r 97.3 0.00042 9.1E-09 65.4 6.3 84 90-204 2-86 (257)
53 PRK13304 L-aspartate dehydroge 97.3 0.00062 1.3E-08 64.6 7.4 88 90-208 2-90 (265)
54 COG1712 Predicted dinucleotide 97.3 0.0007 1.5E-08 64.3 7.5 149 90-272 1-151 (255)
55 COG0289 DapB Dihydrodipicolina 97.3 0.0011 2.3E-08 64.0 8.5 101 88-211 1-102 (266)
56 PRK08374 homoserine dehydrogen 97.1 0.0006 1.3E-08 67.1 5.1 35 88-122 1-44 (336)
57 PRK11579 putative oxidoreducta 97.1 0.002 4.4E-08 62.6 8.7 93 89-212 4-97 (346)
58 PF01113 DapB_N: Dihydrodipico 97.1 0.00068 1.5E-08 57.3 4.4 33 90-122 1-34 (124)
59 PRK06349 homoserine dehydrogen 97.0 0.001 2.2E-08 67.4 5.3 93 89-211 3-105 (426)
60 PRK06392 homoserine dehydrogen 96.9 0.0021 4.5E-08 63.4 7.0 33 90-122 1-40 (326)
61 PRK06813 homoserine dehydrogen 96.9 0.0015 3.3E-08 64.9 5.5 34 88-121 1-43 (346)
62 PLN02775 Probable dihydrodipic 96.8 0.0039 8.4E-08 60.7 7.9 101 87-211 9-113 (286)
63 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.003 6.4E-08 51.4 5.6 93 90-212 1-95 (120)
64 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.033 7.2E-07 52.1 12.0 34 88-122 30-63 (227)
65 COG0460 ThrA Homoserine dehydr 96.4 0.0095 2.1E-07 59.2 7.4 35 88-122 2-45 (333)
66 PLN02696 1-deoxy-D-xylulose-5- 96.0 0.062 1.3E-06 55.5 11.1 111 90-209 58-179 (454)
67 PRK10206 putative oxidoreducta 95.8 0.021 4.7E-07 55.9 6.8 94 90-212 2-97 (344)
68 PRK05447 1-deoxy-D-xylulose 5- 95.8 0.011 2.3E-07 59.9 4.6 110 90-208 2-120 (385)
69 PRK09414 glutamate dehydrogena 95.8 0.045 9.8E-07 56.4 9.2 100 89-208 232-341 (445)
70 cd05211 NAD_bind_Glu_Leu_Phe_V 95.8 0.14 3.1E-06 47.6 11.7 33 89-122 23-55 (217)
71 PF03447 NAD_binding_3: Homose 95.8 0.0014 3.1E-08 54.0 -1.4 83 96-210 1-89 (117)
72 COG4091 Predicted homoserine d 95.6 0.018 3.9E-07 58.0 5.3 93 89-189 17-112 (438)
73 TIGR02130 dapB_plant dihydrodi 95.5 0.024 5.3E-07 55.0 5.6 95 90-211 1-102 (275)
74 PLN02477 glutamate dehydrogena 95.5 0.15 3.3E-06 52.0 11.4 32 90-122 207-238 (410)
75 COG0673 MviM Predicted dehydro 95.2 0.095 2.1E-06 49.8 8.6 96 88-211 2-99 (342)
76 PLN02700 homoserine dehydrogen 95.2 0.038 8.2E-07 55.8 6.0 35 88-122 2-44 (377)
77 cd05313 NAD_bind_2_Glu_DH NAD( 95.2 0.2 4.4E-06 48.1 10.6 47 90-137 39-93 (254)
78 COG4569 MhpF Acetaldehyde dehy 94.9 0.049 1.1E-06 51.7 5.5 72 178-253 71-144 (310)
79 COG0569 TrkA K+ transport syst 94.7 0.082 1.8E-06 49.2 6.5 99 90-213 1-103 (225)
80 PRK09436 thrA bifunctional asp 94.7 0.029 6.3E-07 61.5 3.9 35 87-121 463-505 (819)
81 PF02826 2-Hacid_dh_C: D-isome 94.4 0.055 1.2E-06 48.1 4.5 31 90-121 37-67 (178)
82 PRK09466 metL bifunctional asp 94.4 0.036 7.8E-07 60.9 3.9 35 87-121 456-499 (810)
83 PTZ00079 NADP-specific glutama 94.1 0.27 5.8E-06 51.0 9.2 101 90-205 238-348 (454)
84 cd01075 NAD_bind_Leu_Phe_Val_D 93.9 0.31 6.8E-06 44.5 8.5 31 90-122 29-59 (200)
85 PLN00016 RNA-binding protein; 93.5 0.23 5.1E-06 48.6 7.3 35 86-121 49-88 (378)
86 PRK05472 redox-sensing transcr 93.5 0.17 3.7E-06 46.4 5.9 95 90-212 85-180 (213)
87 PF03435 Saccharop_dh: Sacchar 93.3 0.074 1.6E-06 52.4 3.6 96 92-209 1-96 (386)
88 PRK08229 2-dehydropantoate 2-r 92.4 1.3 2.8E-05 42.7 10.6 33 88-121 1-33 (341)
89 CHL00194 ycf39 Ycf39; Provisio 92.2 0.31 6.7E-06 46.5 5.9 30 91-121 2-32 (317)
90 PRK07417 arogenate dehydrogena 92.1 0.33 7.2E-06 46.0 6.0 38 91-132 2-39 (279)
91 PRK08410 2-hydroxyacid dehydro 92.0 0.18 4E-06 49.1 4.2 32 89-121 145-176 (311)
92 PRK14030 glutamate dehydrogena 92.0 1.5 3.3E-05 45.4 10.9 103 89-205 228-339 (445)
93 PRK06487 glycerate dehydrogena 91.8 0.2 4.3E-06 49.0 4.3 31 90-121 149-179 (317)
94 COG2344 AT-rich DNA-binding pr 91.6 0.35 7.6E-06 45.2 5.3 95 90-212 85-180 (211)
95 COG1063 Tdh Threonine dehydrog 91.4 0.61 1.3E-05 45.9 7.2 101 91-212 171-272 (350)
96 PRK14031 glutamate dehydrogena 91.3 0.83 1.8E-05 47.3 8.3 99 89-203 228-336 (444)
97 PRK06932 glycerate dehydrogena 91.3 0.25 5.4E-06 48.3 4.3 30 90-120 148-177 (314)
98 COG2910 Putative NADH-flavin r 91.2 0.85 1.8E-05 42.7 7.4 31 90-121 1-32 (211)
99 PF05368 NmrA: NmrA-like famil 91.2 0.26 5.5E-06 44.6 4.1 95 92-210 1-102 (233)
100 cd08230 glucose_DH Glucose deh 90.9 2.5 5.4E-05 40.7 10.7 139 91-253 175-315 (355)
101 PLN02819 lysine-ketoglutarate 90.8 0.73 1.6E-05 52.3 7.9 93 90-205 570-675 (1042)
102 COG1748 LYS9 Saccharopine dehy 90.7 0.84 1.8E-05 46.5 7.5 99 90-210 2-100 (389)
103 PRK07819 3-hydroxybutyryl-CoA 90.5 1.7 3.7E-05 41.7 9.1 150 91-257 7-180 (286)
104 TIGR01202 bchC 2-desacetyl-2-h 90.4 1.3 2.8E-05 42.2 8.2 124 91-253 147-271 (308)
105 PLN02928 oxidoreductase family 90.4 0.33 7.2E-06 48.1 4.3 31 90-121 160-190 (347)
106 KOG4354 N-acetyl-gamma-glutamy 90.2 2.3 4.9E-05 41.6 9.6 33 89-121 19-52 (340)
107 COG0111 SerA Phosphoglycerate 90.2 0.36 7.8E-06 47.7 4.3 31 90-121 143-173 (324)
108 TIGR03649 ergot_EASG ergot alk 90.1 0.98 2.1E-05 42.0 7.0 30 91-121 1-31 (285)
109 PRK07502 cyclohexadienyl dehyd 90.1 0.95 2.1E-05 43.4 7.1 31 90-120 7-38 (307)
110 PRK06436 glycerate dehydrogena 89.8 0.4 8.8E-06 46.8 4.3 31 90-121 123-153 (303)
111 PRK07574 formate dehydrogenase 89.7 0.4 8.7E-06 48.5 4.3 31 90-121 193-223 (385)
112 PF02629 CoA_binding: CoA bind 89.7 0.39 8.5E-06 38.6 3.5 91 90-211 4-95 (96)
113 PRK13243 glyoxylate reductase; 89.6 0.42 9.1E-06 47.1 4.3 31 90-121 151-181 (333)
114 PRK15409 bifunctional glyoxyla 89.5 0.43 9.4E-06 46.9 4.3 29 90-119 146-175 (323)
115 PF03446 NAD_binding_2: NAD bi 89.5 0.53 1.1E-05 41.1 4.4 40 90-133 2-41 (163)
116 PRK11790 D-3-phosphoglycerate 89.5 0.42 9.2E-06 48.5 4.4 30 90-120 152-181 (409)
117 cd00755 YgdL_like Family of ac 89.3 0.45 9.7E-06 44.9 4.1 159 89-265 11-178 (231)
118 PF10727 Rossmann-like: Rossma 89.2 0.33 7.2E-06 41.8 2.9 31 90-121 11-41 (127)
119 PF13380 CoA_binding_2: CoA bi 89.1 1.2 2.6E-05 37.3 6.1 83 91-211 2-88 (116)
120 PLN02712 arogenate dehydrogena 89.1 0.81 1.8E-05 49.4 6.3 31 90-121 53-83 (667)
121 TIGR01761 thiaz-red thiazoliny 88.9 1.1 2.4E-05 44.7 6.7 94 89-212 3-99 (343)
122 PRK11559 garR tartronate semia 88.9 0.53 1.2E-05 44.6 4.3 32 88-120 1-32 (296)
123 PF03807 F420_oxidored: NADP o 88.8 0.98 2.1E-05 35.3 5.1 41 91-133 1-43 (96)
124 PRK15469 ghrA bifunctional gly 88.5 0.59 1.3E-05 45.8 4.4 31 90-121 137-167 (312)
125 COG1052 LdhA Lactate dehydroge 88.4 0.57 1.2E-05 46.4 4.3 30 90-120 147-176 (324)
126 PLN02712 arogenate dehydrogena 88.3 0.76 1.6E-05 49.6 5.5 69 44-121 332-400 (667)
127 PRK08306 dipicolinate synthase 88.3 1.1 2.3E-05 43.6 6.0 31 90-121 153-183 (296)
128 PLN02256 arogenate dehydrogena 88.0 0.7 1.5E-05 45.1 4.6 33 88-121 35-67 (304)
129 KOG1203 Predicted dehydrogenas 87.8 1.5 3.3E-05 45.0 7.0 55 64-119 54-109 (411)
130 PLN03209 translocon at the inn 87.8 2.3 5E-05 45.4 8.6 52 68-120 59-111 (576)
131 PRK12480 D-lactate dehydrogena 87.8 0.7 1.5E-05 45.5 4.5 30 90-120 147-176 (330)
132 PLN02306 hydroxypyruvate reduc 87.7 0.67 1.5E-05 46.9 4.4 30 90-120 166-196 (386)
133 PTZ00117 malate dehydrogenase; 87.7 2.7 5.8E-05 41.1 8.4 23 90-112 6-28 (319)
134 PRK15438 erythronate-4-phospha 87.3 0.72 1.6E-05 46.7 4.3 30 90-120 117-146 (378)
135 PLN03139 formate dehydrogenase 87.0 0.7 1.5E-05 46.8 4.1 30 90-120 200-229 (386)
136 PRK09880 L-idonate 5-dehydroge 86.4 4 8.8E-05 39.2 8.8 93 91-208 172-265 (343)
137 TIGR03366 HpnZ_proposed putati 86.2 3.2 7E-05 38.7 7.8 136 91-253 123-260 (280)
138 PRK11880 pyrroline-5-carboxyla 86.1 0.67 1.4E-05 43.2 3.1 25 88-112 1-25 (267)
139 TIGR03736 PRTRC_ThiF PRTRC sys 86.0 1.3 2.8E-05 42.3 5.1 102 89-196 11-124 (244)
140 COG3804 Uncharacterized conser 86.0 0.96 2.1E-05 44.8 4.2 34 88-121 1-34 (350)
141 PF02670 DXP_reductoisom: 1-de 85.6 1.8 3.9E-05 37.7 5.3 108 92-208 1-119 (129)
142 PRK06223 malate dehydrogenase; 85.1 4.8 0.0001 38.5 8.5 30 90-119 3-32 (307)
143 TIGR01327 PGDH D-3-phosphoglyc 84.4 1.2 2.6E-05 46.6 4.3 31 90-121 139-169 (525)
144 PTZ00082 L-lactate dehydrogena 84.2 1.9 4E-05 42.4 5.4 32 90-122 7-38 (321)
145 PRK13403 ketol-acid reductoiso 84.1 1.3 2.8E-05 44.3 4.3 32 90-122 17-48 (335)
146 PRK00257 erythronate-4-phospha 84.1 1.3 2.8E-05 44.8 4.3 30 90-120 117-146 (381)
147 PRK07634 pyrroline-5-carboxyla 84.1 1.7 3.6E-05 39.9 4.7 33 89-121 4-39 (245)
148 PRK08605 D-lactate dehydrogena 83.9 1.4 3.1E-05 43.3 4.4 31 90-120 147-177 (332)
149 PRK13581 D-3-phosphoglycerate 83.7 1.3 2.8E-05 46.3 4.3 31 90-121 141-171 (526)
150 cd08239 THR_DH_like L-threonin 83.0 4.2 9E-05 38.6 7.1 137 90-253 165-302 (339)
151 cd08298 CAD2 Cinnamyl alcohol 82.9 21 0.00046 33.4 11.8 127 91-253 170-296 (329)
152 PRK15116 sulfur acceptor prote 82.3 1.3 2.8E-05 42.9 3.4 24 89-112 30-53 (268)
153 cd08242 MDR_like Medium chain 82.1 10 0.00023 35.4 9.3 86 90-206 157-242 (319)
154 cd01483 E1_enzyme_family Super 81.6 1.3 2.8E-05 37.6 2.8 22 91-112 1-22 (143)
155 KOG2741 Dimeric dihydrodiol de 81.0 2.1 4.5E-05 43.1 4.3 36 87-122 4-41 (351)
156 KOG1502 Flavonol reductase/cin 80.8 6.4 0.00014 39.4 7.7 80 89-189 6-89 (327)
157 PLN02602 lactate dehydrogenase 80.5 4 8.6E-05 40.9 6.2 23 90-112 38-60 (350)
158 cd05291 HicDH_like L-2-hydroxy 80.4 3.4 7.4E-05 39.9 5.5 30 91-120 2-32 (306)
159 PLN02572 UDP-sulfoquinovose sy 80.1 3.9 8.4E-05 41.6 6.1 42 78-120 36-78 (442)
160 PF02774 Semialdhyde_dhC: Semi 80.0 1.4 2.9E-05 39.7 2.5 52 248-299 1-65 (184)
161 cd08237 ribitol-5-phosphate_DH 79.6 13 0.00028 35.9 9.3 29 91-119 166-195 (341)
162 PLN02688 pyrroline-5-carboxyla 79.5 4.1 8.8E-05 37.9 5.6 32 90-121 1-35 (266)
163 TIGR02853 spore_dpaA dipicolin 79.0 2.6 5.7E-05 40.8 4.3 31 90-121 152-182 (287)
164 PF13460 NAD_binding_10: NADH( 79.0 3 6.4E-05 35.9 4.2 29 92-121 1-30 (183)
165 TIGR00243 Dxr 1-deoxy-D-xylulo 78.7 2.5 5.4E-05 43.2 4.2 110 90-208 2-122 (389)
166 PRK09599 6-phosphogluconate de 78.5 2.8 6E-05 40.2 4.3 30 91-121 2-31 (301)
167 COG0334 GdhA Glutamate dehydro 78.4 16 0.00034 37.8 9.7 33 90-123 208-240 (411)
168 PF00056 Ldh_1_N: lactate/mala 78.4 6.2 0.00013 34.1 6.0 79 90-190 1-81 (141)
169 PRK03369 murD UDP-N-acetylmura 78.3 9.9 0.00021 39.2 8.5 83 90-203 13-95 (488)
170 cd08281 liver_ADH_like1 Zinc-d 78.3 11 0.00023 36.7 8.3 98 91-211 194-292 (371)
171 PRK01438 murD UDP-N-acetylmura 78.3 20 0.00043 36.5 10.5 30 90-120 17-46 (480)
172 PRK03562 glutathione-regulated 78.2 3.3 7.2E-05 44.3 5.1 39 90-132 401-439 (621)
173 COG0287 TyrA Prephenate dehydr 77.7 3.1 6.7E-05 40.4 4.3 25 88-112 2-26 (279)
174 PLN00106 malate dehydrogenase 77.4 18 0.00038 35.9 9.6 23 90-112 19-42 (323)
175 PF02254 TrkA_N: TrkA-N domain 76.9 3.9 8.6E-05 32.9 4.1 29 92-121 1-29 (116)
176 PRK12490 6-phosphogluconate de 76.6 3.4 7.4E-05 39.6 4.3 30 91-121 2-31 (299)
177 PF03721 UDPG_MGDP_dh_N: UDP-g 76.6 3.5 7.6E-05 37.3 4.1 29 90-119 1-29 (185)
178 PRK08507 prephenate dehydrogen 76.3 3.7 8.1E-05 38.7 4.4 39 91-132 2-41 (275)
179 COG1062 AdhC Zn-dependent alco 75.8 8.2 0.00018 39.2 6.8 100 90-211 187-287 (366)
180 PLN02545 3-hydroxybutyryl-CoA 75.7 4.6 0.0001 38.4 4.9 30 90-120 5-34 (295)
181 TIGR00872 gnd_rel 6-phosphoglu 75.7 3.7 8E-05 39.5 4.2 38 91-132 2-39 (298)
182 PRK12464 1-deoxy-D-xylulose 5- 75.6 6.2 0.00014 40.3 6.0 107 94-209 1-116 (383)
183 TIGR01505 tartro_sem_red 2-hyd 75.6 3.2 6.9E-05 39.3 3.8 38 91-132 1-38 (291)
184 TIGR03201 dearomat_had 6-hydro 75.5 30 0.00066 33.2 10.5 139 90-253 168-312 (349)
185 PLN02657 3,8-divinyl protochlo 75.4 7.4 0.00016 38.8 6.4 31 90-121 61-92 (390)
186 COG0039 Mdh Malate/lactate deh 75.3 4.6 0.0001 40.1 4.9 23 90-112 1-23 (313)
187 PRK06476 pyrroline-5-carboxyla 75.3 5.7 0.00012 37.0 5.3 38 91-130 2-40 (258)
188 PTZ00075 Adenosylhomocysteinas 74.6 4 8.7E-05 42.7 4.5 30 90-120 255-284 (476)
189 KOG0069 Glyoxylate/hydroxypyru 74.6 2.3 4.9E-05 42.7 2.6 26 87-112 160-185 (336)
190 PRK00066 ldh L-lactate dehydro 74.5 21 0.00045 35.0 9.1 24 90-113 7-30 (315)
191 PLN02586 probable cinnamyl alc 74.4 13 0.00027 36.4 7.7 93 91-209 186-278 (360)
192 PRK03659 glutathione-regulated 74.1 5.3 0.00011 42.5 5.3 39 90-132 401-439 (601)
193 PRK07679 pyrroline-5-carboxyla 73.9 4.7 0.0001 38.2 4.4 31 90-120 4-37 (279)
194 PF00208 ELFV_dehydrog: Glutam 73.9 4 8.7E-05 38.7 3.9 31 90-121 33-63 (244)
195 PRK12491 pyrroline-5-carboxyla 73.6 4.8 0.0001 38.5 4.4 43 88-133 1-46 (272)
196 cd05294 LDH-like_MDH_nadp A la 73.5 6.8 0.00015 38.1 5.5 30 90-119 1-32 (309)
197 PRK08818 prephenate dehydrogen 73.1 4.9 0.00011 40.6 4.5 31 89-119 4-35 (370)
198 PRK12475 thiamine/molybdopteri 73.1 3.3 7.2E-05 41.0 3.3 32 89-121 24-55 (338)
199 PRK11199 tyrA bifunctional cho 72.9 4.8 0.0001 40.3 4.4 30 90-120 99-129 (374)
200 cd05283 CAD1 Cinnamyl alcohol 72.8 31 0.00068 32.7 9.8 92 91-209 172-263 (337)
201 PRK09496 trkA potassium transp 72.2 4.9 0.00011 40.0 4.3 30 91-121 2-31 (453)
202 PLN02514 cinnamyl-alcohol dehy 72.2 13 0.00029 36.0 7.2 136 91-258 183-319 (357)
203 PRK11064 wecC UDP-N-acetyl-D-m 72.1 5.2 0.00011 40.6 4.5 37 90-130 4-40 (415)
204 cd05293 LDH_1 A subgroup of L- 71.8 7.9 0.00017 37.9 5.6 23 90-112 4-26 (312)
205 PTZ00431 pyrroline carboxylate 71.7 6 0.00013 37.2 4.6 23 90-112 4-26 (260)
206 PRK14619 NAD(P)H-dependent gly 71.3 5.6 0.00012 38.3 4.3 31 90-121 5-35 (308)
207 PRK00094 gpsA NAD(P)H-dependen 71.3 6 0.00013 37.5 4.5 30 90-120 2-31 (325)
208 cd08301 alcohol_DH_plants Plan 71.2 12 0.00027 36.1 6.7 97 90-209 189-289 (369)
209 COG0771 MurD UDP-N-acetylmuram 70.9 21 0.00045 37.2 8.6 88 90-204 8-95 (448)
210 COG1179 Dinucleotide-utilizing 70.4 10 0.00022 36.9 5.8 114 91-218 32-163 (263)
211 PLN02494 adenosylhomocysteinas 69.9 6 0.00013 41.5 4.4 30 90-120 255-284 (477)
212 COG0743 Dxr 1-deoxy-D-xylulose 69.8 8.8 0.00019 39.2 5.4 43 90-133 2-46 (385)
213 cd05290 LDH_3 A subgroup of L- 69.7 8.3 0.00018 37.7 5.2 24 91-114 1-24 (307)
214 TIGR03026 NDP-sugDHase nucleot 69.5 6 0.00013 39.7 4.2 29 91-120 2-30 (411)
215 PRK07201 short chain dehydroge 69.3 35 0.00075 35.7 10.0 31 91-121 2-34 (657)
216 TIGR01087 murD UDP-N-acetylmur 69.0 25 0.00054 35.1 8.5 30 91-122 1-30 (433)
217 TIGR03451 mycoS_dep_FDH mycoth 68.9 28 0.00061 33.6 8.6 30 90-120 178-208 (358)
218 PRK05479 ketol-acid reductoiso 68.8 6.1 0.00013 39.4 4.1 31 90-121 18-48 (330)
219 PRK15059 tartronate semialdehy 68.6 6.7 0.00014 37.8 4.2 29 91-120 2-30 (292)
220 cd08294 leukotriene_B4_DH_like 68.6 26 0.00057 32.6 8.1 94 91-208 146-240 (329)
221 PRK06129 3-hydroxyacyl-CoA deh 68.4 7.3 0.00016 37.5 4.4 31 90-121 3-33 (308)
222 PRK11908 NAD-dependent epimera 68.3 7.6 0.00016 37.3 4.6 32 90-121 2-34 (347)
223 COG1064 AdhP Zn-dependent alco 68.3 31 0.00068 34.7 8.9 131 90-253 168-301 (339)
224 PRK10669 putative cation:proto 68.2 8.7 0.00019 40.2 5.3 38 88-129 416-453 (558)
225 TIGR01019 sucCoAalpha succinyl 67.9 20 0.00044 35.0 7.4 86 90-208 7-93 (286)
226 PLN02427 UDP-apiose/xylose syn 67.8 7.7 0.00017 38.0 4.5 32 90-121 15-47 (386)
227 PLN02178 cinnamyl-alcohol dehy 67.7 37 0.0008 33.5 9.3 132 91-253 181-313 (375)
228 PRK14618 NAD(P)H-dependent gly 67.7 7.9 0.00017 37.4 4.5 31 90-121 5-35 (328)
229 PLN02260 probable rhamnose bio 67.6 12 0.00025 39.9 6.1 46 86-133 377-424 (668)
230 PLN02778 3,5-epimerase/4-reduc 67.6 16 0.00035 34.9 6.6 31 87-118 7-38 (298)
231 TIGR00936 ahcY adenosylhomocys 66.8 7.4 0.00016 39.9 4.3 30 90-120 196-225 (406)
232 PRK06928 pyrroline-5-carboxyla 66.7 8.4 0.00018 36.7 4.4 32 90-121 2-36 (277)
233 COG2085 Predicted dinucleotide 66.6 11 0.00025 35.5 5.2 92 90-211 2-93 (211)
234 KOG0068 D-3-phosphoglycerate d 66.6 5.7 0.00012 40.4 3.3 28 91-119 148-175 (406)
235 PLN02695 GDP-D-mannose-3',5'-e 66.5 11 0.00025 37.0 5.5 31 90-121 22-53 (370)
236 PRK06988 putative formyltransf 66.5 7.9 0.00017 37.9 4.3 31 88-119 1-31 (312)
237 PRK15461 NADH-dependent gamma- 66.5 7.8 0.00017 37.2 4.2 31 90-121 2-32 (296)
238 PRK06718 precorrin-2 dehydroge 66.3 94 0.002 28.5 11.1 31 90-121 11-41 (202)
239 PLN02740 Alcohol dehydrogenase 65.6 18 0.00039 35.4 6.7 99 91-211 201-302 (381)
240 TIGR00465 ilvC ketol-acid redu 65.6 8.2 0.00018 38.0 4.2 31 90-121 4-34 (314)
241 PRK06130 3-hydroxybutyryl-CoA 65.4 10 0.00022 36.2 4.8 30 90-120 5-34 (311)
242 cd08245 CAD Cinnamyl alcohol d 65.3 36 0.00077 31.9 8.3 92 91-209 165-256 (330)
243 PRK08644 thiamine biosynthesis 65.1 3.2 7E-05 38.3 1.3 24 89-112 28-51 (212)
244 cd08277 liver_alcohol_DH_like 65.0 36 0.00077 33.0 8.5 30 90-120 186-216 (365)
245 PF02737 3HCDH_N: 3-hydroxyacy 64.6 10 0.00022 34.0 4.3 145 91-252 1-168 (180)
246 cd05213 NAD_bind_Glutamyl_tRNA 64.5 8.9 0.00019 37.2 4.2 31 90-120 179-209 (311)
247 PRK05808 3-hydroxybutyryl-CoA 64.5 9.7 0.00021 36.0 4.4 30 90-120 4-33 (282)
248 PRK06444 prephenate dehydrogen 64.5 8.1 0.00018 35.6 3.7 23 90-112 1-24 (197)
249 TIGR01915 npdG NADPH-dependent 64.4 10 0.00023 34.6 4.5 29 90-119 1-30 (219)
250 COG0702 Predicted nucleoside-d 64.0 9.7 0.00021 34.4 4.1 30 91-121 2-32 (275)
251 cd08233 butanediol_DH_like (2R 63.9 34 0.00073 32.7 8.0 95 91-208 175-271 (351)
252 KOG0455 Homoserine dehydrogena 63.8 7.6 0.00017 38.2 3.5 34 89-122 3-44 (364)
253 TIGR02819 fdhA_non_GSH formald 63.5 1E+02 0.0023 30.7 11.7 31 90-121 187-217 (393)
254 PRK05865 hypothetical protein; 63.4 23 0.0005 39.8 7.6 30 91-121 2-32 (854)
255 cd01338 MDH_choloroplast_like 63.2 20 0.00043 35.4 6.4 23 90-112 3-26 (322)
256 cd08235 iditol_2_DH_like L-idi 63.0 67 0.0015 30.2 9.8 97 91-209 168-265 (343)
257 cd08296 CAD_like Cinnamyl alco 62.9 30 0.00065 32.8 7.4 95 91-210 166-260 (333)
258 cd01487 E1_ThiF_like E1_ThiF_l 62.7 4 8.7E-05 36.4 1.4 22 91-112 1-22 (174)
259 TIGR02818 adh_III_F_hyde S-(hy 62.5 21 0.00045 34.9 6.4 99 90-211 187-289 (368)
260 PRK06249 2-dehydropantoate 2-r 62.3 13 0.00027 35.9 4.8 31 89-119 5-36 (313)
261 cd08255 2-desacetyl-2-hydroxye 61.9 57 0.0012 29.7 8.8 90 91-209 100-190 (277)
262 PRK07680 late competence prote 61.8 11 0.00025 35.4 4.3 22 91-112 2-23 (273)
263 PRK06545 prephenate dehydrogen 61.7 10 0.00022 37.6 4.1 29 91-119 2-31 (359)
264 PRK07531 bifunctional 3-hydrox 61.6 12 0.00026 38.8 4.8 31 89-120 4-34 (495)
265 PRK14106 murD UDP-N-acetylmura 61.6 36 0.00079 34.1 8.1 88 90-203 6-93 (450)
266 PRK10083 putative oxidoreducta 61.5 39 0.00084 31.9 7.9 97 91-210 163-260 (339)
267 cd08260 Zn_ADH6 Alcohol dehydr 61.3 51 0.0011 31.2 8.7 96 91-209 168-264 (345)
268 PRK06035 3-hydroxyacyl-CoA deh 61.2 12 0.00026 35.6 4.4 30 90-120 4-33 (291)
269 PF04321 RmlD_sub_bind: RmlD s 61.0 12 0.00027 35.5 4.5 31 90-121 1-32 (286)
270 PRK04690 murD UDP-N-acetylmura 61.0 44 0.00095 34.3 8.7 30 90-121 9-38 (468)
271 PRK05476 S-adenosyl-L-homocyst 60.8 11 0.00024 38.8 4.3 30 90-120 213-242 (425)
272 cd08269 Zn_ADH9 Alcohol dehydr 60.5 27 0.00057 32.2 6.4 96 91-208 132-228 (312)
273 cd08234 threonine_DH_like L-th 60.3 30 0.00065 32.4 6.9 95 91-209 162-257 (334)
274 PRK09260 3-hydroxybutyryl-CoA 60.3 12 0.00026 35.5 4.2 38 91-132 3-40 (288)
275 cd08300 alcohol_DH_class_III c 60.2 53 0.0012 31.9 8.8 29 90-119 188-217 (368)
276 PRK00141 murD UDP-N-acetylmura 60.1 59 0.0013 33.4 9.4 29 91-121 17-45 (473)
277 cd08236 sugar_DH NAD(P)-depend 59.9 35 0.00076 32.2 7.3 95 91-208 162-257 (343)
278 PLN02827 Alcohol dehydrogenase 59.8 25 0.00054 34.6 6.5 29 90-119 195-224 (378)
279 cd08289 MDR_yhfp_like Yhfp put 59.5 41 0.00089 31.3 7.6 95 91-210 149-244 (326)
280 PRK10309 galactitol-1-phosphat 59.4 28 0.0006 33.3 6.6 28 91-119 163-191 (347)
281 cd01065 NAD_bind_Shikimate_DH 59.3 16 0.00035 30.7 4.4 31 90-120 20-50 (155)
282 PRK06522 2-dehydropantoate 2-r 58.9 14 0.00031 34.6 4.4 29 91-120 2-30 (304)
283 cd00757 ThiF_MoeB_HesA_family 58.8 4.2 9.1E-05 37.6 0.8 32 89-121 21-52 (228)
284 cd05188 MDR Medium chain reduc 58.8 92 0.002 27.5 9.4 30 90-120 136-165 (271)
285 cd08231 MDR_TM0436_like Hypoth 58.8 72 0.0016 30.6 9.3 29 91-120 180-209 (361)
286 PLN03154 putative allyl alcoho 58.7 59 0.0013 31.5 8.8 95 91-208 161-257 (348)
287 KOG0022 Alcohol dehydrogenase, 58.6 16 0.00035 37.0 4.8 96 91-208 195-293 (375)
288 cd08263 Zn_ADH10 Alcohol dehyd 58.6 81 0.0018 30.4 9.7 97 91-209 190-287 (367)
289 PRK07530 3-hydroxybutyryl-CoA 58.6 16 0.00035 34.6 4.8 30 90-120 5-34 (292)
290 cd08254 hydroxyacyl_CoA_DH 6-h 58.5 25 0.00055 32.7 6.0 95 91-208 168-262 (338)
291 cd08262 Zn_ADH8 Alcohol dehydr 58.4 22 0.00049 33.5 5.7 99 90-208 163-263 (341)
292 TIGR02825 B4_12hDH leukotriene 58.3 67 0.0015 30.3 8.9 96 91-209 141-237 (325)
293 cd08278 benzyl_alcohol_DH Benz 58.1 26 0.00056 34.0 6.2 96 91-209 189-285 (365)
294 PRK05690 molybdopterin biosynt 57.7 6.9 0.00015 36.9 2.1 24 89-112 32-55 (245)
295 PRK08655 prephenate dehydrogen 57.4 14 0.00031 37.8 4.4 29 91-120 2-31 (437)
296 PLN02166 dTDP-glucose 4,6-dehy 56.9 26 0.00057 35.7 6.2 31 90-121 121-152 (436)
297 PLN02702 L-idonate 5-dehydroge 56.7 28 0.0006 33.6 6.1 101 91-209 184-285 (364)
298 COG0345 ProC Pyrroline-5-carbo 56.5 23 0.0005 34.4 5.5 41 90-133 2-45 (266)
299 PTZ00142 6-phosphogluconate de 56.4 13 0.00028 38.7 3.9 40 90-133 2-41 (470)
300 cd08295 double_bond_reductase_ 56.0 72 0.0016 30.3 8.7 95 91-208 154-250 (338)
301 cd08270 MDR4 Medium chain dehy 55.7 1.4E+02 0.003 27.4 10.3 89 90-210 134-223 (305)
302 PRK02006 murD UDP-N-acetylmura 55.6 61 0.0013 33.3 8.7 29 91-121 9-37 (498)
303 PRK00421 murC UDP-N-acetylmura 55.5 57 0.0012 33.1 8.4 31 90-122 8-39 (461)
304 cd05191 NAD_bind_amino_acid_DH 55.4 23 0.00051 27.6 4.4 22 90-111 24-45 (86)
305 TIGR01035 hemA glutamyl-tRNA r 55.3 16 0.00035 37.1 4.4 32 90-121 181-212 (417)
306 cd05280 MDR_yhdh_yhfp Yhdh and 55.1 69 0.0015 29.6 8.3 94 91-209 149-243 (325)
307 cd08292 ETR_like_2 2-enoyl thi 54.8 1.3E+02 0.0029 27.7 10.2 31 90-121 141-172 (324)
308 COG1023 Gnd Predicted 6-phosph 54.7 12 0.00027 36.6 3.2 43 90-136 1-43 (300)
309 PRK09496 trkA potassium transp 54.6 17 0.00037 36.2 4.4 30 90-120 232-261 (453)
310 PRK09987 dTDP-4-dehydrorhamnos 54.4 26 0.00057 33.2 5.4 27 91-119 2-29 (299)
311 KOG4039 Serine/threonine kinas 54.2 54 0.0012 31.0 7.2 33 89-121 18-52 (238)
312 PLN00141 Tic62-NAD(P)-related 54.1 26 0.00057 32.0 5.3 31 90-121 18-49 (251)
313 PRK01710 murD UDP-N-acetylmura 54.0 35 0.00075 34.8 6.6 29 91-121 16-44 (458)
314 KOG2380 Prephenate dehydrogena 53.9 15 0.00033 37.7 3.8 24 89-112 52-75 (480)
315 PRK08219 short chain dehydroge 53.8 18 0.00039 31.7 4.0 30 90-121 4-34 (227)
316 PRK00683 murD UDP-N-acetylmura 53.4 18 0.00039 36.3 4.3 30 90-120 4-33 (418)
317 PRK09424 pntA NAD(P) transhydr 53.3 70 0.0015 33.9 8.8 32 89-122 165-196 (509)
318 cd05288 PGDH Prostaglandin deh 53.1 74 0.0016 29.6 8.2 96 90-208 147-243 (329)
319 PRK05708 2-dehydropantoate 2-r 53.1 19 0.00041 34.8 4.3 30 89-119 2-31 (305)
320 PRK04663 murD UDP-N-acetylmura 53.0 84 0.0018 31.7 9.1 84 90-203 8-93 (438)
321 PLN02896 cinnamyl-alcohol dehy 53.0 25 0.00055 33.8 5.2 31 90-121 11-42 (353)
322 PRK02472 murD UDP-N-acetylmura 52.8 63 0.0014 32.3 8.1 29 91-121 7-35 (447)
323 TIGR02355 moeB molybdopterin s 52.7 6.8 0.00015 36.9 1.1 23 90-112 25-47 (240)
324 PLN02240 UDP-glucose 4-epimera 52.2 24 0.00052 33.6 4.8 32 89-121 5-37 (352)
325 TIGR02354 thiF_fam2 thiamine b 52.1 6.4 0.00014 36.1 0.8 32 89-121 21-52 (200)
326 cd05284 arabinose_DH_like D-ar 52.1 51 0.0011 31.0 7.0 97 91-209 170-266 (340)
327 PRK05678 succinyl-CoA syntheta 52.0 50 0.0011 32.4 7.0 85 90-208 9-95 (291)
328 TIGR00518 alaDH alanine dehydr 51.9 20 0.00043 35.9 4.4 30 90-120 168-197 (370)
329 PF01262 AlaDh_PNT_C: Alanine 51.8 26 0.00056 30.7 4.6 31 90-121 21-51 (168)
330 PRK14573 bifunctional D-alanyl 51.7 67 0.0014 35.4 8.7 30 91-122 6-36 (809)
331 PRK15057 UDP-glucose 6-dehydro 51.7 19 0.00041 36.4 4.2 39 91-134 2-40 (388)
332 PRK14806 bifunctional cyclohex 51.4 20 0.00044 38.6 4.6 32 89-120 3-35 (735)
333 PRK05866 short chain dehydroge 51.2 36 0.00079 32.2 5.8 52 67-120 18-71 (293)
334 TIGR00561 pntA NAD(P) transhyd 51.1 61 0.0013 34.4 7.9 151 90-252 165-338 (511)
335 PRK02318 mannitol-1-phosphate 50.8 18 0.0004 36.1 3.9 31 90-120 1-31 (381)
336 PRK09291 short chain dehydroge 50.7 25 0.00054 31.6 4.5 33 88-121 1-34 (257)
337 cd08284 FDH_like_2 Glutathione 50.7 29 0.00063 32.7 5.1 92 90-204 169-261 (344)
338 cd00401 AdoHcyase S-adenosyl-L 50.4 22 0.00047 36.6 4.5 29 90-119 203-231 (413)
339 PRK10675 UDP-galactose-4-epime 50.2 23 0.00051 33.4 4.4 30 91-121 2-32 (338)
340 cd08252 AL_MDR Arginate lyase 50.1 67 0.0014 30.0 7.4 96 91-209 152-248 (336)
341 PRK03803 murD UDP-N-acetylmura 50.1 66 0.0014 32.4 7.8 30 91-122 8-37 (448)
342 cd08238 sorbose_phosphate_red 49.9 76 0.0016 31.5 8.1 109 91-210 178-289 (410)
343 PRK05442 malate dehydrogenase; 49.7 28 0.00061 34.4 5.0 22 90-111 5-27 (326)
344 PLN02206 UDP-glucuronate decar 49.5 21 0.00045 36.5 4.2 31 90-121 120-151 (442)
345 cd08258 Zn_ADH4 Alcohol dehydr 49.5 71 0.0015 30.1 7.5 139 91-253 167-305 (306)
346 cd01339 LDH-like_MDH L-lactate 49.3 19 0.00041 34.6 3.6 28 92-119 1-28 (300)
347 cd08285 NADP_ADH NADP(H)-depen 49.3 1E+02 0.0022 29.4 8.6 29 90-119 168-197 (351)
348 TIGR00873 gnd 6-phosphoglucona 49.0 18 0.00039 37.6 3.6 39 91-133 1-39 (467)
349 TIGR02356 adenyl_thiF thiazole 48.9 7.7 0.00017 35.4 0.8 24 89-112 21-44 (202)
350 PRK12921 2-dehydropantoate 2-r 48.9 24 0.00052 33.2 4.2 29 90-119 1-29 (305)
351 cd08232 idonate-5-DH L-idonate 48.8 1.6E+02 0.0034 27.7 9.7 93 91-208 168-261 (339)
352 PRK06046 alanine dehydrogenase 48.5 27 0.00058 34.2 4.6 33 90-122 130-162 (326)
353 TIGR00507 aroE shikimate 5-deh 48.1 69 0.0015 30.2 7.2 30 91-121 119-148 (270)
354 cd08259 Zn_ADH5 Alcohol dehydr 48.1 80 0.0017 29.2 7.5 29 91-120 165-194 (332)
355 PRK15182 Vi polysaccharide bio 47.5 23 0.0005 36.2 4.1 38 90-132 7-44 (425)
356 PF00670 AdoHcyase_NAD: S-aden 47.4 32 0.00069 31.2 4.5 29 91-121 25-53 (162)
357 cd01486 Apg7 Apg7 is an E1-lik 46.7 6.4 0.00014 39.1 -0.0 22 91-112 1-22 (307)
358 PLN02662 cinnamyl-alcohol dehy 46.5 48 0.001 31.0 5.8 29 91-120 6-35 (322)
359 cd08286 FDH_like_ADH2 formalde 46.4 1.4E+02 0.003 28.3 9.0 30 90-119 168-197 (345)
360 TIGR01181 dTDP_gluc_dehyt dTDP 46.2 25 0.00055 32.3 3.9 31 91-121 1-33 (317)
361 PRK08293 3-hydroxybutyryl-CoA 46.1 30 0.00065 32.9 4.4 30 90-120 4-33 (287)
362 PRK04308 murD UDP-N-acetylmura 46.1 1.5E+02 0.0033 29.8 9.7 29 90-119 6-34 (445)
363 PRK07066 3-hydroxybutyryl-CoA 45.8 29 0.00063 34.3 4.4 29 90-119 8-36 (321)
364 PRK03806 murD UDP-N-acetylmura 45.8 1.1E+02 0.0024 30.6 8.6 87 90-209 7-94 (438)
365 cd00650 LDH_MDH_like NAD-depen 45.3 36 0.00077 32.0 4.8 21 92-112 1-22 (263)
366 cd01336 MDH_cytoplasmic_cytoso 45.3 33 0.00071 33.8 4.6 24 89-112 2-26 (325)
367 COG1086 Predicted nucleoside-d 45.2 50 0.0011 35.7 6.2 114 91-221 252-387 (588)
368 PRK15181 Vi polysaccharide bio 45.1 30 0.00064 33.5 4.3 31 90-121 16-47 (348)
369 cd08261 Zn_ADH7 Alcohol dehydr 45.1 2E+02 0.0043 27.1 9.8 95 91-208 162-257 (337)
370 TIGR02717 AcCoA-syn-alpha acet 45.0 62 0.0013 33.2 6.8 81 90-208 8-94 (447)
371 PRK08017 oxidoreductase; Provi 44.7 36 0.00078 30.5 4.5 30 90-120 3-33 (256)
372 KOG0024 Sorbitol dehydrogenase 44.7 47 0.001 33.7 5.6 102 85-203 166-267 (354)
373 cd08240 6_hydroxyhexanoate_dh_ 44.6 62 0.0013 30.8 6.3 93 91-206 178-271 (350)
374 TIGR01214 rmlD dTDP-4-dehydror 44.4 30 0.00065 31.8 4.0 29 91-120 1-30 (287)
375 PLN02350 phosphogluconate dehy 44.2 22 0.00048 37.4 3.4 128 90-229 7-157 (493)
376 cd05279 Zn_ADH1 Liver alcohol 44.0 57 0.0012 31.6 6.1 96 91-208 186-284 (365)
377 PF00107 ADH_zinc_N: Zinc-bind 43.9 8.3 0.00018 31.3 0.2 91 100-212 2-92 (130)
378 PRK05653 fabG 3-ketoacyl-(acyl 43.8 56 0.0012 28.7 5.5 31 90-121 6-37 (246)
379 COG0451 WcaG Nucleoside-diphos 43.6 33 0.00073 31.5 4.2 30 91-121 2-32 (314)
380 cd05292 LDH_2 A subgroup of L- 43.6 33 0.00071 33.3 4.3 22 91-112 2-23 (308)
381 PRK10754 quinone oxidoreductas 43.2 56 0.0012 30.5 5.7 31 90-121 142-173 (327)
382 PRK07326 short chain dehydroge 43.1 39 0.00085 29.9 4.5 30 90-120 7-37 (237)
383 PRK08125 bifunctional UDP-gluc 42.8 33 0.00071 36.7 4.5 32 90-121 316-348 (660)
384 PTZ00325 malate dehydrogenase; 42.7 47 0.001 32.9 5.3 77 178-259 76-173 (321)
385 PLN02353 probable UDP-glucose 42.4 34 0.00075 35.6 4.5 31 90-120 2-33 (473)
386 PRK00045 hemA glutamyl-tRNA re 42.4 34 0.00074 34.7 4.4 31 90-121 183-214 (423)
387 PF01488 Shikimate_DH: Shikima 42.4 48 0.001 28.1 4.7 31 90-121 13-44 (135)
388 TIGR03466 HpnA hopanoid-associ 42.2 35 0.00076 31.7 4.1 30 91-121 2-32 (328)
389 PRK07877 hypothetical protein; 42.1 10 0.00022 41.7 0.6 112 89-203 107-222 (722)
390 cd01484 E1-2_like Ubiquitin ac 41.5 23 0.00051 33.5 2.9 22 91-112 1-22 (234)
391 PRK08132 FAD-dependent oxidore 41.4 49 0.0011 34.3 5.5 50 67-119 3-52 (547)
392 cd05281 TDH Threonine dehydrog 41.3 2.3E+02 0.005 26.8 9.7 28 91-119 166-194 (341)
393 cd00704 MDH Malate dehydrogena 41.0 48 0.001 32.7 5.1 23 90-112 1-24 (323)
394 COG5322 Predicted dehydrogenas 40.9 94 0.002 31.2 6.9 44 178-223 230-274 (351)
395 cd08246 crotonyl_coA_red croto 40.9 1.6E+02 0.0035 28.7 8.7 29 91-120 196-225 (393)
396 PRK05586 biotin carboxylase; V 40.9 35 0.00077 34.6 4.3 32 88-120 1-32 (447)
397 PRK05600 thiamine biosynthesis 40.6 15 0.00032 37.0 1.5 111 89-204 41-158 (370)
398 cd08293 PTGR2 Prostaglandin re 40.4 62 0.0014 30.5 5.6 95 91-208 157-253 (345)
399 PLN00112 malate dehydrogenase 40.1 15 0.00032 38.2 1.4 23 89-111 100-123 (444)
400 PRK06153 hypothetical protein; 40.0 15 0.00033 37.7 1.4 23 90-112 177-199 (393)
401 PRK06019 phosphoribosylaminoim 40.0 43 0.00092 33.2 4.6 30 90-120 3-32 (372)
402 PF00070 Pyr_redox: Pyridine n 39.5 69 0.0015 24.2 4.8 32 91-122 1-33 (80)
403 TIGR01751 crot-CoA-red crotony 39.5 1.9E+02 0.0042 28.3 9.1 28 91-119 192-220 (398)
404 cd08243 quinone_oxidoreductase 39.4 1.3E+02 0.0027 27.6 7.3 89 91-205 145-234 (320)
405 cd05285 sorbitol_DH Sorbitol d 38.9 2E+02 0.0043 27.3 8.8 29 90-119 164-193 (343)
406 PLN02214 cinnamoyl-CoA reducta 38.9 48 0.001 32.1 4.7 31 90-121 11-42 (342)
407 PLN00198 anthocyanidin reducta 38.6 46 0.001 31.7 4.5 29 90-119 10-39 (338)
408 PRK05597 molybdopterin biosynt 38.4 15 0.00034 36.5 1.2 24 89-112 28-51 (355)
409 PRK07023 short chain dehydroge 38.4 47 0.001 29.8 4.2 29 90-119 2-31 (243)
410 cd08250 Mgc45594_like Mgc45594 38.2 2E+02 0.0044 26.7 8.6 96 91-210 142-238 (329)
411 PRK10084 dTDP-glucose 4,6 dehy 38.1 43 0.00092 32.0 4.1 30 91-120 2-32 (352)
412 PRK12771 putative glutamate sy 38.1 9.8 0.00021 39.8 -0.3 30 90-120 138-167 (564)
413 PF01370 Epimerase: NAD depend 38.1 53 0.0011 28.8 4.4 29 92-121 1-30 (236)
414 cd01080 NAD_bind_m-THF_DH_Cycl 38.0 78 0.0017 28.4 5.5 31 90-121 45-76 (168)
415 cd08287 FDH_like_ADH3 formalde 38.0 1.7E+02 0.0037 27.6 8.2 135 91-252 171-307 (345)
416 PF00289 CPSase_L_chain: Carba 37.9 39 0.00085 28.2 3.4 33 88-121 1-33 (110)
417 COG0677 WecC UDP-N-acetyl-D-ma 37.4 37 0.0008 35.3 3.7 31 88-119 8-38 (436)
418 PF07991 IlvN: Acetohydroxy ac 37.4 44 0.00096 30.5 3.8 31 90-121 5-35 (165)
419 PLN02858 fructose-bisphosphate 37.4 41 0.00089 39.7 4.5 33 88-121 323-355 (1378)
420 PRK12745 3-ketoacyl-(acyl-carr 37.2 55 0.0012 29.3 4.5 32 88-120 1-33 (256)
421 PRK08618 ornithine cyclodeamin 36.9 70 0.0015 31.3 5.5 91 90-209 128-219 (325)
422 PRK10217 dTDP-glucose 4,6-dehy 36.9 46 0.00099 31.8 4.1 31 90-121 2-33 (355)
423 PLN02583 cinnamoyl-CoA reducta 36.7 50 0.0011 31.1 4.3 30 91-121 8-38 (297)
424 PRK06719 precorrin-2 dehydroge 36.7 56 0.0012 28.8 4.4 30 90-120 14-43 (157)
425 PLN00203 glutamyl-tRNA reducta 36.2 41 0.00088 35.6 3.9 32 90-121 267-298 (519)
426 TIGR01919 hisA-trpF 1-(5-phosp 36.2 1.4E+02 0.003 28.3 7.1 86 181-268 75-174 (243)
427 PRK10537 voltage-gated potassi 36.1 57 0.0012 33.2 4.9 31 90-121 241-271 (393)
428 cd08265 Zn_ADH3 Alcohol dehydr 35.9 2.9E+02 0.0063 27.0 9.6 28 91-119 206-234 (384)
429 TIGR02279 PaaC-3OHAcCoADH 3-hy 35.8 48 0.001 34.8 4.3 37 90-130 6-42 (503)
430 TIGR01777 yfcH conserved hypot 35.6 41 0.00089 30.6 3.5 28 93-121 2-30 (292)
431 PRK12826 3-ketoacyl-(acyl-carr 35.4 63 0.0014 28.6 4.6 31 90-121 7-38 (251)
432 PRK08328 hypothetical protein; 35.0 24 0.00051 33.0 1.8 23 90-112 28-50 (231)
433 cd01337 MDH_glyoxysomal_mitoch 34.7 57 0.0012 32.1 4.5 23 90-112 1-24 (310)
434 TIGR01757 Malate-DH_plant mala 34.7 32 0.0007 35.1 2.8 24 89-112 44-68 (387)
435 PRK06947 glucose-1-dehydrogena 34.7 62 0.0013 28.9 4.4 31 88-119 1-32 (248)
436 PRK08268 3-hydroxy-acyl-CoA de 34.7 51 0.0011 34.5 4.4 30 90-120 8-37 (507)
437 PRK15076 alpha-galactosidase; 34.5 42 0.0009 34.5 3.6 13 90-102 2-14 (431)
438 PRK10538 malonic semialdehyde 34.3 60 0.0013 29.3 4.3 29 91-120 2-31 (248)
439 TIGR01763 MalateDH_bact malate 34.3 59 0.0013 31.6 4.5 30 90-119 2-31 (305)
440 cd08244 MDR_enoyl_red Possible 34.0 3.4E+02 0.0074 25.0 9.4 30 91-121 145-175 (324)
441 PLN02260 probable rhamnose bio 33.9 50 0.0011 35.1 4.2 32 90-121 7-40 (668)
442 PLN02986 cinnamyl-alcohol dehy 33.8 94 0.002 29.3 5.7 30 91-121 7-37 (322)
443 TIGR00514 accC acetyl-CoA carb 33.8 55 0.0012 33.2 4.3 32 88-120 1-32 (449)
444 PRK00258 aroE shikimate 5-dehy 33.4 63 0.0014 30.7 4.4 32 90-121 124-155 (278)
445 TIGR01179 galE UDP-glucose-4-e 33.2 57 0.0012 30.0 4.0 29 91-120 1-30 (328)
446 cd08248 RTN4I1 Human Reticulon 33.1 2.4E+02 0.0052 26.5 8.3 31 90-121 164-195 (350)
447 cd08249 enoyl_reductase_like e 32.7 2.8E+02 0.006 26.4 8.7 96 91-210 157-255 (339)
448 PRK12439 NAD(P)H-dependent gly 32.7 67 0.0015 31.5 4.6 23 90-112 8-30 (341)
449 cd08279 Zn_ADH_class_III Class 32.6 1.5E+02 0.0032 28.6 6.9 96 91-209 185-282 (363)
450 PRK07364 2-octaprenyl-6-methox 32.6 89 0.0019 30.6 5.5 32 87-119 16-47 (415)
451 PRK08267 short chain dehydroge 32.4 72 0.0016 28.8 4.5 29 91-120 3-32 (260)
452 PRK06924 short chain dehydroge 32.4 70 0.0015 28.6 4.4 29 91-120 3-32 (251)
453 PRK11150 rfaD ADP-L-glycero-D- 32.4 84 0.0018 29.4 5.0 29 92-121 2-31 (308)
454 cd05286 QOR2 Quinone oxidoredu 32.3 2E+02 0.0043 25.9 7.3 30 91-121 139-169 (320)
455 TIGR03570 NeuD_NnaD sugar O-ac 32.2 72 0.0016 27.5 4.3 30 91-121 1-30 (201)
456 TIGR01472 gmd GDP-mannose 4,6- 32.0 64 0.0014 30.9 4.3 30 91-121 2-32 (343)
457 PRK05993 short chain dehydroge 31.8 78 0.0017 29.3 4.7 32 88-120 3-35 (277)
458 PRK03815 murD UDP-N-acetylmura 31.8 59 0.0013 32.9 4.1 29 90-121 1-29 (401)
459 PTZ00354 alcohol dehydrogenase 31.5 1.1E+02 0.0024 28.3 5.6 40 90-133 142-182 (334)
460 PRK12320 hypothetical protein; 31.3 62 0.0014 35.6 4.5 30 91-121 2-32 (699)
461 PRK14192 bifunctional 5,10-met 31.1 1.7E+02 0.0037 28.4 7.0 23 90-112 160-183 (283)
462 TIGR01772 MDH_euk_gproteo mala 31.0 76 0.0017 31.3 4.7 22 91-112 1-23 (312)
463 TIGR01381 E1_like_apg7 E1-like 30.6 17 0.00037 39.7 0.1 23 90-112 339-361 (664)
464 PF02558 ApbA: Ketopantoate re 30.3 83 0.0018 26.3 4.2 29 92-121 1-29 (151)
465 PRK05565 fabG 3-ketoacyl-(acyl 30.2 83 0.0018 27.8 4.4 29 90-119 6-35 (247)
466 COG3957 Phosphoketolase [Carbo 30.1 1.9E+02 0.0042 32.3 7.8 94 187-299 595-690 (793)
467 PRK07231 fabG 3-ketoacyl-(acyl 29.8 80 0.0017 28.0 4.3 29 91-120 7-36 (251)
468 PRK07178 pyruvate carboxylase 29.6 74 0.0016 32.7 4.5 33 88-121 1-33 (472)
469 PRK12827 short chain dehydroge 29.6 85 0.0019 27.7 4.4 30 90-120 7-37 (249)
470 PLN02948 phosphoribosylaminoim 29.5 1.1E+02 0.0024 32.8 5.8 30 89-119 22-51 (577)
471 cd08256 Zn_ADH2 Alcohol dehydr 29.4 1.4E+02 0.0029 28.5 6.0 29 91-120 177-206 (350)
472 PRK09422 ethanol-active dehydr 29.3 1.7E+02 0.0036 27.5 6.5 99 91-211 165-263 (338)
473 cd05278 FDH_like Formaldehyde 29.3 2.7E+02 0.0058 26.1 8.0 29 91-119 170-198 (347)
474 PF00899 ThiF: ThiF family; I 29.1 84 0.0018 26.3 4.0 105 90-199 3-113 (135)
475 PRK05396 tdh L-threonine 3-deh 29.0 5E+02 0.011 24.5 9.8 96 91-208 166-262 (341)
476 cd08247 AST1_like AST1 is a cy 28.7 1.8E+02 0.0039 27.7 6.7 96 91-209 154-259 (352)
477 PRK08163 salicylate hydroxylas 28.5 85 0.0018 30.5 4.5 31 88-119 3-33 (396)
478 PRK14620 NAD(P)H-dependent gly 28.3 84 0.0018 30.2 4.4 26 91-117 2-27 (326)
479 TIGR03855 NAD_NadX aspartate d 28.3 57 0.0012 30.8 3.1 30 178-207 37-66 (229)
480 PRK06180 short chain dehydroge 28.2 97 0.0021 28.6 4.7 30 90-120 5-35 (277)
481 PLN02650 dihydroflavonol-4-red 28.2 75 0.0016 30.5 4.1 28 91-119 7-35 (351)
482 PRK07074 short chain dehydroge 27.9 94 0.002 28.0 4.4 29 91-120 4-33 (257)
483 PRK14851 hypothetical protein; 27.8 19 0.00041 39.3 -0.2 98 90-190 44-145 (679)
484 PRK12825 fabG 3-ketoacyl-(acyl 27.7 1.1E+02 0.0023 26.9 4.6 28 90-118 7-35 (249)
485 PRK05086 malate dehydrogenase; 27.6 90 0.0019 30.5 4.5 21 90-110 1-22 (312)
486 PLN02653 GDP-mannose 4,6-dehyd 27.3 1.1E+02 0.0023 29.2 4.9 30 90-120 7-37 (340)
487 COG1091 RfbD dTDP-4-dehydrorha 27.2 94 0.002 30.6 4.5 42 91-134 2-47 (281)
488 TIGR00692 tdh L-threonine 3-de 27.1 2E+02 0.0043 27.3 6.7 28 91-119 164-192 (340)
489 PRK07577 short chain dehydroge 27.1 96 0.0021 27.3 4.3 29 91-120 5-34 (234)
490 PRK07411 hypothetical protein; 27.1 25 0.00054 35.6 0.5 32 89-121 38-69 (390)
491 PRK12824 acetoacetyl-CoA reduc 26.9 1E+02 0.0022 27.2 4.4 30 90-120 3-33 (245)
492 TIGR02822 adh_fam_2 zinc-bindi 26.5 5.7E+02 0.012 24.4 11.4 86 91-208 168-253 (329)
493 PRK09135 pteridine reductase; 26.4 1.2E+02 0.0026 26.8 4.8 30 90-120 7-37 (249)
494 cd08273 MDR8 Medium chain dehy 26.4 3E+02 0.0065 25.5 7.6 29 91-120 142-171 (331)
495 PRK07024 short chain dehydroge 26.2 1.1E+02 0.0023 27.8 4.5 30 90-120 3-33 (257)
496 PRK07578 short chain dehydroge 26.1 1.5E+02 0.0033 25.7 5.3 28 91-120 2-30 (199)
497 TIGR01142 purT phosphoribosylg 26.0 88 0.0019 30.5 4.1 29 91-120 1-29 (380)
498 TIGR01161 purK phosphoribosyla 26.0 91 0.002 30.4 4.2 29 91-120 1-29 (352)
499 KOG2250 Glutamate/leucine/phen 26.0 3.4E+02 0.0074 29.0 8.5 43 90-133 252-302 (514)
500 PRK12829 short chain dehydroge 25.9 1E+02 0.0022 27.7 4.2 30 90-120 12-42 (264)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-87 Score=654.25 Aligned_cols=226 Identities=56% Similarity=0.892 Sum_probs=215.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHcC----CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEE--------eCCCeEE
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFR----DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV--------VDDSTLE 155 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~----~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~--------e~~~~L~ 155 (334)
|++||||||||||||+++|+++++ ++++||||||++.++++++|||||||+||+|+++++. ++ +.|.
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~-~~l~ 80 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTD-DVLV 80 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccC-CEEE
Confidence 668999999999999999998875 5799999999879999999999999999999999987 54 6899
Q ss_pred ECCEEEEEE-eccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCC-CCC
Q 019933 156 INGKLIKVF-SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKP-NMN 232 (334)
Q Consensus 156 inGk~I~V~-~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~-~~~ 232 (334)
+||++|.++ +++||+++||+++|+||||||||.|+++++++.||++||||||||+|++| .+||||||||+.|++ .++
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCc
Confidence 999999986 99999999999999999999999999999999999999999999999887 689999999999998 578
Q ss_pred EEecCCchhhhHHHHHHHH-hhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCC
Q 019933 233 IVSNASCTTNCLAPLAKVV-HEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVF 310 (334)
Q Consensus 233 IVSnASCTTncLAPvlKvL-~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l 310 (334)
||||||||||||||++|+| ||+|||++|+|||||+||++|+++|+||+|||||+|+|++|||||+||||||+++ +|+|
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L 240 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 240 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecccc
Confidence 9999999999999999999 7999999999999999999999999996689999999999999999999999999 9999
Q ss_pred CCCC
Q 019933 311 ADIH 314 (334)
Q Consensus 311 ~~~~ 314 (334)
+|+-
T Consensus 241 ~GKl 244 (361)
T PTZ00434 241 KGKL 244 (361)
T ss_pred CCce
Confidence 9974
No 2
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=2.1e-80 Score=618.26 Aligned_cols=229 Identities=49% Similarity=0.786 Sum_probs=217.0
Q ss_pred CCCCceeEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEE
Q 019933 85 RSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK 162 (334)
Q Consensus 85 ~~~M~ikVgINGfGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~ 162 (334)
...|++||||||||||||+++|+++++ +++|||||||+ .++++|+|||||||+||+|+++++..+++.|.+||+.|+
T Consensus 71 ~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~ 149 (442)
T PLN02237 71 ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIK 149 (442)
T ss_pred cccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEE
Confidence 445889999999999999999998866 67999999995 899999999999999999999998733468999999999
Q ss_pred EEeccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeEEeecCccccCCC-CCEEecCCc
Q 019933 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPN-MNIVSNASC 239 (334)
Q Consensus 163 V~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~V~GVN~~~y~~~-~~IVSnASC 239 (334)
+++++||.++||+++|+||||||||.|+++++++.|+++|||||+||+|.+| +|||||||||+.|++. ++|||||||
T Consensus 150 V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSC 229 (442)
T PLN02237 150 VVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASC 229 (442)
T ss_pred EEEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCch
Confidence 9999999999999999999999999999999999999999999999999865 7999999999999876 789999999
Q ss_pred hhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCCc
Q 019933 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIHD 315 (334)
Q Consensus 240 TTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~~ 315 (334)
|||||+|++|+|||+|||++++|||||+||+||+++|++| |||||+|+|++|||||+|||||||++ +|+|+|+-+
T Consensus 230 TTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~ 305 (442)
T PLN02237 230 TTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLN 305 (442)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCcee
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999 999999843
No 3
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.4e-79 Score=606.96 Aligned_cols=306 Identities=79% Similarity=1.146 Sum_probs=266.6
Q ss_pred Chhhhhhhhhhhccccc---ccccCCCCCccccCcccccccccccc-ceeeccCCCCCCCCccccccccccCCccccccc
Q 019933 1 MAFSSLLRSTASASLVR---ADLTSSPSDRVKGSPTAAFSRNLNTS-SIFGTSVPSGSSSSSLQTCAAKGIQPIRATATE 76 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (334)
|+++..||+++.+++.. +...++...+.+. +++.+... ++++.+ . ..+.+...+.....++++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~ 72 (421)
T PLN02272 1 MAFSSLLRSAATAPAAAARGSDFSSSSSDPSKV-----SSVGFSSSLSFSGSS-S--GASSSLQSCSARSVQPIKATATE 72 (421)
T ss_pred CccccccccccccchhccccCCCCCCCCccccc-----ccccceeeeeccccc-c--ccccccccccccccchhhhhhcc
Confidence 57889999988865443 3344444555555 55555532 333333 1 44566677778888888888888
Q ss_pred CCccccCCCCCCceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEE
Q 019933 77 IPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI 156 (334)
Q Consensus 77 ~~~~~~~~~~~M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~i 156 (334)
.+..+.+.....++||||||||||||+++|++.++++++||||||++.++++|+|||||||+||+|+++++..++++|.+
T Consensus 73 ~~~~~~~~~~~~~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~ 152 (421)
T PLN02272 73 APPAVLKSSSSGKTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEI 152 (421)
T ss_pred ccccccccccccceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEE
Confidence 88877665333238999999999999999999877789999999998999999999999999999999999733468999
Q ss_pred CCEEEEEEeccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEec
Q 019933 157 NGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSN 236 (334)
Q Consensus 157 nGk~I~V~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSn 236 (334)
||+.|+|++++||+++||+++|+||||||||.|+++|+++.|+++||||||||+|++|+|+||||||++.|+++++||||
T Consensus 153 ~G~~I~V~~~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISn 232 (421)
T PLN02272 153 NGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSN 232 (421)
T ss_pred CCEEEEEEecCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeC
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999887789999
Q ss_pred CCchhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 237 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 237 ASCTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
||||||||+|++|+|||+|||++++|||||+||++|+++|+++.+|||++|++++||||++||++|+++| +|+|+|+-
T Consensus 233 aSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl 311 (421)
T PLN02272 233 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKL 311 (421)
T ss_pred CCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcE
Confidence 9999999999999999999999999999999999999999997689999999999999999999999999 99999973
No 4
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-79 Score=590.33 Aligned_cols=224 Identities=58% Similarity=0.866 Sum_probs=216.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
++||||||||||||+|+|++.+++ ++|+|||||+ .+++++||||+|||+||+|.++++.++ +.+.|||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~~-~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKD-DALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCCCcccccC-CeEEECCceEEEEecC
Confidence 379999999999999999999998 7999999997 899999999999999999999999764 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHc-CCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCchhhhHH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKG-GAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~a-GaKkVIISaPs~D-~p~~V~GVN~~~y~~~~~IVSnASCTTncLA 245 (334)
||+++||+++|+|+|+||||.|+++|++++|+++ |||||+||+|+++ +++|||||||+.|++.++||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999987 9999999999999988999999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCCc
Q 019933 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIHD 315 (334)
Q Consensus 246 PvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~~ 315 (334)
|++|+|+|+|||++|+|||||+||++|+++|||| |||||+|+|++||||++|||||||++ +|+|+||-+
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~ 228 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLT 228 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCcee
Confidence 9999999999999999999999999999999999 88999999999999999999999999 999999854
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-77 Score=582.89 Aligned_cols=222 Identities=46% Similarity=0.777 Sum_probs=212.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+||||||||||||+++|+++++ ++++||||||+ .++++++|||||||+||+|+++++.++ +.|.+||++|++++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~-~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLNADISADE-NSITVNGKTIKCVSDR 79 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCCCcEEEcC-CEEEECCEEEEEEEcC
Confidence 6999999999999999998877 57999999996 899999999999999999999999975 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeEEeecCccccCC-CCCEEecCCchhhhH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKP-NMNIVSNASCTTNCL 244 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~V~GVN~~~y~~-~~~IVSnASCTTncL 244 (334)
||+++||+++|+||||||||.|+++++++.|+++|||||++|+|.+| +|+|||||||+.|++ .++||||||||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~L 159 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCL 159 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHH
Confidence 99999999999999999999999999999999999999999999765 599999999999986 478999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 245 APvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
+|++|+|||+|||++++|||||+||++|+++|++| |||||+|+|++||||++||||||+++ +|+|+|+-
T Consensus 160 ap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki 229 (337)
T PRK07403 160 APIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKL 229 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcE
Confidence 99999999999999999999999999999999999 89999999999999999999999999 99999973
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-77 Score=581.64 Aligned_cols=226 Identities=61% Similarity=0.968 Sum_probs=217.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
|++||||||||||||+++|+++++++++||||||++.++++|+|||||||+||+|++++++++ +.|.+||++|++++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~-~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTD-GFLMIGSKKVHVFFEK 79 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecC-CEEEECCeEEEEEeCC
Confidence 668999999999999999999988889999999988999999999999999999999999975 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCchhhhHHH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~~~~IVSnASCTTncLAP 246 (334)
||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.++ +|+|||||||+.|++.++||||||||||||+|
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap 159 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP 159 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999775 79999999999998877899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeecCCCCCCccCCC--CCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPS--MKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 247 vlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~--~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
++|+|||+|||++++|||||++|++|+++||++ .||||++|++++||||++||+||++++ +|+|+|+-
T Consensus 160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl 230 (337)
T PTZ00023 160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKL 230 (337)
T ss_pred HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcE
Confidence 999999999999999999999999999999986 389999999999999999999999999 99999863
No 7
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.5e-77 Score=579.45 Aligned_cols=224 Identities=63% Similarity=0.997 Sum_probs=215.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
|++||||||||||||+++|+++++++++||||||+ .++++|+|||||||+||+|+++++.++ +.|.+||+.|.+++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~~~v~~~~-~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKD-GHLIVNGKKIRVTAER 78 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcCCcEEecC-CEEEECCeEEEEEEcC
Confidence 56799999999999999999998888999999995 899999999999999999999999975 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCchhhhHHH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~~~~IVSnASCTTncLAP 246 (334)
||+++||+++|+||||||||.|++++++++|+++|||||++|+|++| +|+|||||||+.|++ ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 799999999999976 7899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 247 vlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
++|+|||+|||++++|||||+||++|+++|+++.||||++|++++||||++||+|++++| +|+|+|+-
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl 226 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKL 226 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeE
Confidence 999999999999999999999999999999997689999999999999999999999999 99999973
No 8
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.7e-77 Score=578.36 Aligned_cols=223 Identities=48% Similarity=0.800 Sum_probs=214.2
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
|++||||||||||||+++|+++++++++||||||+ .++++|+|||||||+||+|+++++.++ +.|.+||+.|++++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~~~v~~~~-~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFDGTVEAFE-DHLLVDGKKIRLLNNR 78 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEecC-CEEEECCEEEEEEEcC
Confidence 67899999999999999999998888999999996 799999999999999999999999975 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCC-CCCEEecCCchhhhHH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKP-NMNIVSNASCTTNCLA 245 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~-~~~IVSnASCTTncLA 245 (334)
||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.+| +++|||||||+.|++ .++||||||||||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999776 567899999999987 4789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCC
Q 019933 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADI 313 (334)
Q Consensus 246 PvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~ 313 (334)
|++|+|||+|||++++|||||++|++|+++|++| +||||+|++++||||++||||+++++ +|+|+|+
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gk 226 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGK 226 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCe
Confidence 9999999999999999999999999999999999 89999999999999999999999999 9999994
No 9
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.1e-76 Score=571.71 Aligned_cols=225 Identities=34% Similarity=0.565 Sum_probs=214.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCC-CeEEEeCCCeEEECC-EEEEEEe
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEING-KLIKVFS 165 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~-~~v~~e~~~~L~inG-k~I~V~~ 165 (334)
|++||||||||||||+++|++++++++|||||||+..++++++|||||||+||+|+ .+++.++ +.|.+|| ++|++++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~-~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVG-EQIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcC-CEEecCCCeEEEEEe
Confidence 56899999999999999999998888999999998789999999999999999996 6899875 6899999 8999999
Q ss_pred ccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhhhHH
Q 019933 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (334)
Q Consensus 166 ~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLA 245 (334)
++||+++||+++|+||||||||.|++++++.+|+++|||||||++|++|+|||||||||+.|+++++||||||||||||+
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 159 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA 159 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCC--CCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSM--KDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 246 PvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~--kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
|++|+|||+|||++++|||||+|+ +|...|+|++ +||||+|+|++||||++|||||+++| +|+|+|+-
T Consensus 160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl 230 (342)
T PTZ00353 160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRI 230 (342)
T ss_pred HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcE
Confidence 999999999999999999999997 7999998763 89999999999999999999999999 99999984
No 10
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.8e-75 Score=577.94 Aligned_cols=228 Identities=46% Similarity=0.772 Sum_probs=217.2
Q ss_pred CCCCceeEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEE
Q 019933 85 RSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK 162 (334)
Q Consensus 85 ~~~M~ikVgINGfGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~ 162 (334)
...|++||||||||||||.++|+++++ ++++||||||+ .++++++|||+|||+||+|+++++..+++.|.+||++|+
T Consensus 56 ~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~ 134 (395)
T PLN03096 56 VTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIK 134 (395)
T ss_pred ccccccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEE
Confidence 445888999999999999999999987 57999999996 799999999999999999999998644468999999999
Q ss_pred EEeccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCchh
Q 019933 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTT 241 (334)
Q Consensus 163 V~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~~~~IVSnASCTT 241 (334)
+++++||+++||+++|+||||||||.|+++++++.|+++|||||+||+|.++ +|||||||||+.|+++++|||||||||
T Consensus 135 v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTT 214 (395)
T PLN03096 135 VVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTT 214 (395)
T ss_pred EEEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHH
Confidence 9999999999999999999999999999999999999999999999999765 799999999999987788999999999
Q ss_pred hhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 242 NCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 242 ncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
|||+|++|+|||+|||++++|||||+||++|+++|++| +||||+|+|++||||++||+||++++ +|+|+|+-
T Consensus 215 n~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl 287 (395)
T PLN03096 215 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKL 287 (395)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcE
Confidence 99999999999999999999999999999999999999 89999999999999999999999999 99999974
No 11
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-74 Score=576.03 Aligned_cols=238 Identities=34% Similarity=0.533 Sum_probs=219.9
Q ss_pred ccCCccccCCCCCCceeEEEEcCChhHHHHHHHHHcC----CCceEEEEe----CCCCCHHHHhhhhccccccccCCCeE
Q 019933 75 TEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFR----DDVDVVAVN----DPFIDAKYMAYMFKYDSTHGVFKGTI 146 (334)
Q Consensus 75 ~~~~~~~~~~~~~M~ikVgINGfGrIGR~vlRal~~~----~d~eiVAIN----D~~~d~~~~ayLlkYDSthGkf~~~v 146 (334)
+++.+.........+.||||||||||||+++|++.++ ++++||||| |. .|+++++|||+|||+||+|++++
T Consensus 113 ~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~~~v 191 (477)
T PRK08289 113 EELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFNGTI 191 (477)
T ss_pred HHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCCCce
Confidence 4445444443333456999999999999999999877 579999995 65 79999999999999999999999
Q ss_pred EEeC-CCeEEECCEEEEEEeccCCCCCCCCccCcc--EEEeccCCCCCHHHHHHHHH-cCCCEEEEeCCCCC-CCeEEee
Q 019933 147 NVVD-DSTLEINGKLIKVFSKRDPAEIPWGDYGVD--YVVESSGVFTTIAKASAHMK-GGAKKVVISAPSAD-APMFVVG 221 (334)
Q Consensus 147 ~~e~-~~~L~inGk~I~V~~~~dP~~i~W~~~gvD--iVvEsTG~f~t~e~a~~hl~-aGaKkVIISaPs~D-~p~~V~G 221 (334)
++++ ++.|++||+.|++++++||+++||+++|+| +||||||.|++++++++||+ +||||||||||++| +|+||||
T Consensus 192 ~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~G 271 (477)
T PRK08289 192 TVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHG 271 (477)
T ss_pred EeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcc
Confidence 9862 468999999999999999999999999999 99999999999999999999 89999999999886 8999999
Q ss_pred cCccccCCCCCEEecCCchhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccch
Q 019933 222 VNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAA 301 (334)
Q Consensus 222 VN~~~y~~~~~IVSnASCTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAA 301 (334)
|||+.|+++++||||||||||||+|++|+|||+|||++++|||||+||++|+++|++| +||||+|+|++||||++||||
T Consensus 272 VN~~~~~~~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAA 350 (477)
T PRK08289 272 VNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAA 350 (477)
T ss_pred cCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChh
Confidence 9999998778899999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred hhhhc-CCCCCCCC
Q 019933 302 KVKYR-YPVFADIH 314 (334)
Q Consensus 302 kAv~k-~P~l~~~~ 314 (334)
||++| +|+|+|+-
T Consensus 351 kAv~kVLP~L~GKl 364 (477)
T PRK08289 351 KAVAKALPELAGKL 364 (477)
T ss_pred hhhhhcccccCCcE
Confidence 99999 99999984
No 12
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2e-73 Score=554.72 Aligned_cols=226 Identities=68% Similarity=1.084 Sum_probs=217.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCC-eEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~-~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
++||||||||||||..+|.+.+++++++|||||+..++++++|||||||+||+|++ +++.++++.|.+||++|.+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~ 84 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIR 84 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcC
Confidence 47999999999999999999888899999999988999999999999999999996 89985556799999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhhhHHHH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 247 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPv 247 (334)
||+++||+++|+||||||||.|+++|+++.|+++|||||+||+|++|+|+||||||++.|+++++||||||||||||+|+
T Consensus 85 ~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~ 164 (338)
T PLN02358 85 NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPL 164 (338)
T ss_pred CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999988789999999999999999
Q ss_pred HHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 248 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 248 lKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
+|+|||+|||++++|||||+||++|+++|+++.+||||+|++++||||++||++|+++| +|+|+|+-
T Consensus 165 lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl 232 (338)
T PLN02358 165 AKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKL 232 (338)
T ss_pred HHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcE
Confidence 99999999999999999999999999999997689999999999999999999999999 99999963
No 13
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=3.1e-73 Score=551.23 Aligned_cols=220 Identities=56% Similarity=0.901 Sum_probs=212.3
Q ss_pred eEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCC-eEEECCE-EEEEEec
Q 019933 91 KVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDS-TLEINGK-LIKVFSK 166 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~-~L~inGk-~I~V~~~ 166 (334)
||||||||||||+++|+++++ ++++||||||+ .++++++|||||||+||+|+++++.++ + .|.+||+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~-~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTADE-DKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCCCcEEecC-CceEEECCeEEEEEEec
Confidence 799999999999999999887 57999999996 899999999999999999999999875 6 6999999 9999999
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCchhhhHH
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~~~~IVSnASCTTncLA 245 (334)
+||+++||+++|+||||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|+..++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCC
Q 019933 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADI 313 (334)
Q Consensus 246 PvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~ 313 (334)
|++|+||++|||++++|||||++|++|+++|+++ +|||++|++++||||++||++|++++ +|+|+|+
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gk 226 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGK 226 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCe
Confidence 9999999999999999999999999999999998 89999999999999999999999999 9999986
No 14
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.4e-72 Score=544.51 Aligned_cols=223 Identities=42% Similarity=0.682 Sum_probs=213.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
|++||||||||||||.++|++.++++++||+|||+..++++++|||||||+||+|+++++.++ +.|.+||++|++++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g-~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEG-DAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcC-CEEEECCEEEEEEecC
Confidence 568999999999999999999998899999999988999999999999999999999999865 6899999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeEEeecCccccCCC-CCEEecCCchhhhH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPN-MNIVSNASCTTNCL 244 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~V~GVN~~~y~~~-~~IVSnASCTTncL 244 (334)
+|++++|+ |+||||||||.|++++.++.|+++|||||++|+|.+| +|+||||||++.|+++ ++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999998 9999999999999999999999999999999999764 6999999999999973 78999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 245 APvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
+|++|+|||+|||++++|||||+||++|+++|++| +|||++|++++||||++||++++++| +|+|+|+-
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl 227 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKL 227 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcE
Confidence 99999999999999999999999999999999999 89999999999999999999999999 99999973
No 15
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-72 Score=545.22 Aligned_cols=222 Identities=41% Similarity=0.673 Sum_probs=212.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcC---CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 90 TKVGINGFGRIGRLVLRVAAFR---DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~---~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
+||||||||||||.++|+|+++ +++++|||||+ .++++|+|||||||+||+|+++++.++ ++|.+||++|+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~~~v~~~~-~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFAWDVRQER-DQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEecC-CEEEECCEEEEEEEc
Confidence 6999999999999999999985 47999999995 899999999999999999999999875 699999999999999
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-C-CCeEEeecCccccCCCCCEEecCCchhhhH
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-D-APMFVVGVNEKTYKPNMNIVSNASCTTNCL 244 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-D-~p~~V~GVN~~~y~~~~~IVSnASCTTncL 244 (334)
+||+++||+++|+||||||||.|++++.++.|+++|||+|++|+|++ | +++|||||||+.|++.++||||||||||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~L 159 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCI 159 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHH
Confidence 99999999999999999999999999999999999999999999975 5 458999999999988788999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 245 APvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
+|++|+|||+|||++++|||||+||++|+++|++| +||||+|++++||||++||++++++| +|+|+|+-
T Consensus 160 ap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv 229 (336)
T PRK13535 160 IPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRF 229 (336)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcE
Confidence 99999999999999999999999999999999998 89999999999999999999999999 99999974
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=2.1e-69 Score=524.11 Aligned_cols=221 Identities=41% Similarity=0.710 Sum_probs=211.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCC---CceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD---DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~---d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
||||||||||||.++|++++++ +|+||+|||+ .++++++|||+|||+||+|+++++.++ +.|.+||+.|++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~~~v~~~~-~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFPGEVKVDG-DCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCCCcEEEeC-CEEEECCeEEEEEEcC
Confidence 6999999999999999999864 6999999995 899999999999999999999999875 6999999999999999
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-C-CCeEEeecCccccCCCCCEEecCCchhhhHH
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-D-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-D-~p~~V~GVN~~~y~~~~~IVSnASCTTncLA 245 (334)
||+++||+++++|+||||||.|.+++.+..|+++|||+|++|+|.. | .++||||||++.|++.++||||||||||||+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~la 158 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIV 158 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999975 4 4589999999999887889999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 246 PvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
|++|+|||+|||++++|||||+||++|+++|++| +||||+|+|++||||++||++++++| +|+|+|+-
T Consensus 159 p~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl 227 (325)
T TIGR01532 159 PLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRF 227 (325)
T ss_pred HHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeE
Confidence 9999999999999999999999999999999998 89999999999999999999999999 99999963
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-67 Score=496.21 Aligned_cols=210 Identities=67% Similarity=1.047 Sum_probs=202.7
Q ss_pred hHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCCCCCCCccCc
Q 019933 100 IGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGV 179 (334)
Q Consensus 100 IGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~~i~W~~~gv 179 (334)
|||+++ + +.++++|+|||||++.+||+|||+|||+||+|++++++++ .+++++|++|.+++++||..++|.+.++
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~~-~~~i~~G~~i~~~~~~~p~~i~w~~~g~ 75 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAEN-FKLIINGNPITIFQFRDPAKIPWGAKGA 75 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccccceeecC-CceeecCceEEeecccCcccCccccccc
Confidence 678887 2 6669999999999999999999999999999999999975 6899999999999999999999999999
Q ss_pred cEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhhhHHHHHHHHhhhcCeeE
Q 019933 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259 (334)
Q Consensus 180 DiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPvlKvL~d~fGI~~ 259 (334)
|+|+|+||.|++.|++..|+++|+||||||+|++|.||||+|||+++|+++..||||+|||||||||++|+|||+|||+|
T Consensus 76 ~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~E 155 (285)
T KOG0657|consen 76 DIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIME 155 (285)
T ss_pred eeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheecccccccc
Confidence 99999999999999999999999999999999999999999999999999778999999999999999999999999999
Q ss_pred EEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCCC
Q 019933 260 GLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADIH 314 (334)
Q Consensus 260 g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~~ 314 (334)
++|||+|++|++|+++|||++|+||++|.|.|||||+|||||||||| +|+|.|+-
T Consensus 156 gLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKL 211 (285)
T KOG0657|consen 156 GLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKL 211 (285)
T ss_pred ccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCcc
Confidence 99999999999999999999999999999999999999999999999 99999974
No 18
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=7.7e-52 Score=363.06 Aligned_cols=149 Identities=60% Similarity=1.003 Sum_probs=140.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
|||||||||||||+++|+++.+++|+||||||+..++++++|||+|||+||+|+.+++.++ +.|.+||+.|++++++||
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~-~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDD-DGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEET-TEEEETTEEEEEEHTSSG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceeccccccc-ceeEeecccccchhhhhh
Confidence 6999999999999999999999999999999996699999999999999999999999875 689999999999999999
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEecCCc
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASC 239 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~V~GVN~~~y~~~~~IVSnASC 239 (334)
+++||+++|+|||+||||.|+++++++.|+++||||||+|+|++| +|||||||||+.|+++++|||||||
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred cccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999986 8999999999999997799999999
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.8e-48 Score=379.07 Aligned_cols=193 Identities=21% Similarity=0.236 Sum_probs=171.5
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHH---HHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAK---YMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 92 VgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~---~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
|||||||||||+++|++.++++++|||||| .+++ +++|+++||++|+.+...++.++ ..|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD--~~~~~~a~lA~~lgyds~~~~~~~~~~~~~-~~l~v~g~--------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK--TSPDFEAYRAKELGIPVYAASEEFIPRFEE-AGIEVAGT--------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec--CChHHHHHHHHHhCCCEEeecCCcceEecc-CceEecCC---------
Confidence 699999999999999998888999999999 5777 78888889999954444677764 46777775
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEecCCchhhhHHH
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~V~GVN~~~y~~~~~IVSnASCTTncLAP 246 (334)
++++. .++|+|+||||.|+++++++.|++.|+|+|++++|++| +++||+||||+.|++.+ +|||+|||||||+|
T Consensus 69 ~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~Lap 144 (333)
T TIGR01546 69 LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLVR 144 (333)
T ss_pred HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHHH
Confidence 34443 37999999999999999999999999999999999987 57999999999998744 99999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccC-Cc---cchhhhhc-CCCCC
Q 019933 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPS-ST---GAAKVKYR-YPVFA 311 (334)
Q Consensus 247 vlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPt-sT---GAAkAv~k-~P~l~ 311 (334)
++|+|+|+|||++++|||||. |+|| +||||+| ++||||+ +| ++|+++++ +|+|+
T Consensus 145 ~~~~L~~~fGI~~~~~Ttvh~-t~dq--------~d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~ 203 (333)
T TIGR01546 145 TLNAINDYSKVDKVRAVMVRR-AADP--------NDVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN 203 (333)
T ss_pred HHHHHHHhcCeEEEEEEEEee-cCCh--------hhhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC
Confidence 999999999999999999997 9999 4899999 5999999 56 77999999 99998
No 20
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=4.5e-47 Score=331.58 Aligned_cols=148 Identities=59% Similarity=0.932 Sum_probs=141.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+||||||||||||.++|++.+++++++|+|||+ .++++++|||+|||+||+|..+++.++ +.|.+||+.|.++++++|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~~~v~~~~-~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFPGEVEVDE-DGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCCCcEEEeC-CEEEECCEEEEEEecCCh
Confidence 499999999999999999998889999999997 899999999999999999999999875 689999999999999999
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEeecCccccCCCCCEEecCCc
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASC 239 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~GVN~~~y~~~~~IVSnASC 239 (334)
.++||+++|+|||+||||.|+++++++.|+++||||||||+|++| ++||||||||++|+++++|||||||
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999987 5699999999999987789999999
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-38 Score=307.09 Aligned_cols=193 Identities=21% Similarity=0.279 Sum_probs=158.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhc---cccccccCCCeEE-EeCCCeEEECCEEEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK---YDSTHGVFKGTIN-VVDDSTLEINGKLIKVFS 165 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlk---YDSthGkf~~~v~-~e~~~~L~inGk~I~V~~ 165 (334)
+||||||||||||.++|++.++++++||+|+|. ++++.+||++ || .||+++...+ +++ ..+.+.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~~~~~~~~~-~~i~V~~~------ 71 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADPEREKAFEE-AGIPVAGT------ 71 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCccccccccC-CceEEcCC------
Confidence 799999999999999999999999999999994 6899999988 45 5777665554 322 23444442
Q ss_pred ccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-CC--CeEEeecCccccCCCCCEEecCCchhh
Q 019933 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-DA--PMFVVGVNEKTYKPNMNIVSNASCTTN 242 (334)
Q Consensus 166 ~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-D~--p~~V~GVN~~~y~~~~~IVSnASCTTn 242 (334)
++++. .++|+||||||.+.+.+.++.|+++| |+||+++|.. ++ .+||+|||++.|.+. ++|+|+|||||
T Consensus 72 ---~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT~ 143 (341)
T PRK04207 72 ---IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNTT 143 (341)
T ss_pred ---hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHHH
Confidence 22221 27999999999999999999999999 7899999864 33 358999999999763 48999999999
Q ss_pred hHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCC----ccchhhhhc-CCCCC
Q 019933 243 CLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSS----TGAAKVKYR-YPVFA 311 (334)
Q Consensus 243 cLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPts----TGAAkAv~k-~P~l~ 311 (334)
||+|++|+||++|||++++|||||++|. + +++| |++.+||||++ +..++++.+ +|+|+
T Consensus 144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~ 206 (341)
T PRK04207 144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD 206 (341)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc
Confidence 9999999999999999999999999983 3 4664 88999999752 344688988 99887
No 22
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.95 E-value=4.6e-28 Score=234.93 Aligned_cols=182 Identities=26% Similarity=0.352 Sum_probs=151.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 90 TKVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
+||+|.| +|.+|+.++|+|.++ +.++++++... . +. +..+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~--------------~---------~~--g~~l~~~g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA--------------R---------SA--GKELSFKGKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc--------------c---------cC--CCeeeeCCceeEEe--
Confidence 5999999 999999999999984 66787777532 0 00 12455566666553
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCCC--CCEEecCCc
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKPN--MNIVSNASC 239 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~~--~~IVSnASC 239 (334)
|+.+.+|. ++|+||+|+|.+.+++.+++|+++|+ +||+.+++ |+|++++|||++.++.. .+||+||+|
T Consensus 55 -d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C 129 (334)
T PRK14874 55 -DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNC 129 (334)
T ss_pred -eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccH
Confidence 44555684 89999999999999999999999999 78866552 47999999999999764 479999999
Q ss_pred hhhhHHHHHHHHhhhcCeeEEEEEEEeecCC------------CCCCccCCC--CCCCCcccccccccccCC-----ccc
Q 019933 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPS--MKDWRGGRGASQNIIPSS-----TGA 300 (334)
Q Consensus 240 TTncLAPvlKvL~d~fGI~~g~mTTVHA~T~------------~Q~~~D~~~--~kd~R~~RaA~~NIIPts-----TGA 300 (334)
+|+|++|.+++|+++|+|+++.|||+|++|+ +|.++|+++ .+++|+.|+++.||||+. ||.
T Consensus 130 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh 209 (334)
T PRK14874 130 STIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGY 209 (334)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCC
Confidence 9999999999999999999999999999995 899999775 268999999999999997 777
Q ss_pred hhh
Q 019933 301 AKV 303 (334)
Q Consensus 301 AkA 303 (334)
++.
T Consensus 210 ~~e 212 (334)
T PRK14874 210 TKE 212 (334)
T ss_pred cHH
Confidence 665
No 23
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.94 E-value=6.3e-27 Score=228.06 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=150.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 91 KVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
||+|.| .|.+|+.++|.|.++ +.++++.+... + +. +..+.+.|+.+.+.. -
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~--------------~---------~~--g~~~~~~~~~~~~~~-~ 54 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD--------------R---------SA--GRKVTFKGKELEVNE-A 54 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc--------------c---------cC--CCeeeeCCeeEEEEe-C
Confidence 689999 999999999999885 43444333210 1 11 234556665554422 2
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-----CCCCeEEeecCccccCC--CCCEEecCCch
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-----~D~p~~V~GVN~~~y~~--~~~IVSnASCT 240 (334)
++ ..| .++|+||+|+|.+.+++.++.|+++|+ +||+.++ .|+|++|+|||++.++. ..++|+||+|+
T Consensus 55 ~~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~ 128 (339)
T TIGR01296 55 KI--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCS 128 (339)
T ss_pred Ch--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcH
Confidence 22 234 389999999999999999999999999 6897765 24799999999999976 24599999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEEEEEEeecCCC------------CCCccCCCCCC--------CCcccccccccccCC---
Q 019933 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTAT------------QKTVDGPSMKD--------WRGGRGASQNIIPSS--- 297 (334)
Q Consensus 241 TncLAPvlKvL~d~fGI~~g~mTTVHA~T~~------------Q~~~D~~~~kd--------~R~~RaA~~NIIPts--- 297 (334)
|+|+++.+++|+++|+|+++.|||+|++|+. |+++|+++ +| .+++|.++.||||+.
T Consensus 129 ~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~-~~~~~~~~~~~~~~~~~~~NiIp~~~~~ 207 (339)
T TIGR01296 129 TIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRE-NNPYIGAPKAKKFPYQIAFNAIPHIDDF 207 (339)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCC-CCccccccccccCCCcccccccCcCCCc
Confidence 9999999999999999999999999999996 77788877 44 899999999999994
Q ss_pred --ccchhhhhc-CCCCC
Q 019933 298 --TGAAKVKYR-YPVFA 311 (334)
Q Consensus 298 --TGAAkAv~k-~P~l~ 311 (334)
||.++...| .|+|+
T Consensus 208 ~~~~~~~Ee~ki~~el~ 224 (339)
T TIGR01296 208 NDDGYTKEETKMLFETR 224 (339)
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 799898888 88887
No 24
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.91 E-value=1.8e-24 Score=209.82 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=129.1
Q ss_pred ceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+++||| | +|.+||.++++|.+|+ |+ +.++ +||. | ..... ++++.++|+.+.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~-fp---v~~l--------~l~~--s-------~~~s~-gk~i~f~g~~~~V~--- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD-LE---IEQI--------SIVE--I-------EPFGE-EQGIRFNNKAVEQI--- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC-Cc---hhhe--------eecc--c-------ccccC-CCEEEECCEEEEEE---
Confidence 569999 9 9999999999999985 87 4443 5553 2 11112 35899999999993
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-----CCCCeEEeecCccccCC--CCCEEecCCch
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-----~D~p~~V~GVN~~~y~~--~~~IVSnASCT 240 (334)
+.++.+|. ++||||+ +|.-.+++.+....++|| +||++.| .|+|++|++||++.+.. ...||+||+||
T Consensus 57 ~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs 131 (322)
T PRK06901 57 APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ 131 (322)
T ss_pred ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence 45566775 8999999 999999999999999999 9999987 36999999999998875 35799999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEEEEEEeecCCC
Q 019933 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (334)
Q Consensus 241 TncLAPvlKvL~d~fGI~~g~mTTVHA~T~~ 271 (334)
|..|+..||+||+.|||++..+|||||+++.
T Consensus 132 Ti~l~~aL~pL~~~~~l~rv~VsTyQavSGa 162 (322)
T PRK06901 132 VSQLALALAPFLQEQPLSQIFVTSLLPASYT 162 (322)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecchhhc
Confidence 9999999999999999999999999999987
No 25
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.89 E-value=3.8e-24 Score=188.64 Aligned_cols=69 Identities=58% Similarity=0.878 Sum_probs=66.1
Q ss_pred HHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccchhhhhc-CCCCCCC
Q 019933 244 LAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKVKYR-YPVFADI 313 (334)
Q Consensus 244 LAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGAAkAv~k-~P~l~~~ 313 (334)
|||++|+|||+|||++++|||||+||++|+++|+|| +||||+|+|++||||++|||||++++ +|+|+|+
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gk 70 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGK 70 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTT
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCc
Confidence 799999999999999999999999999999999999 99999999999999999999999999 9999987
No 26
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=190.13 Aligned_cols=155 Identities=25% Similarity=0.366 Sum_probs=124.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+||||.| +|.+|+.+++.|.++ +|++ .. .++|. ++.++ +...+.+.|+.+.+.. .-
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~-~f~~---~~--------~~~~A---------S~rSa-G~~~~~f~~~~~~v~~-~~ 58 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER-HFPF---EE--------LVLLA---------SARSA-GKKYIEFGGKSIGVPE-DA 58 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc-CCCc---ce--------EEEEe---------ccccc-CCccccccCccccCcc-cc
Confidence 6999999 999999999999996 3542 11 02232 12233 1223778787766622 11
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-----CCCCeEEeecCccccCCC--CC-EEecCCch
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--MN-IVSNASCT 240 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-----~D~p~~V~GVN~~~y~~~--~~-IVSnASCT 240 (334)
.+...|. ++||||+|.|.-.+++.++...++|+ +||++.| .|+|++|++||.+.+... .. ||+|++||
T Consensus 59 ~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCs 134 (334)
T COG0136 59 ADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCS 134 (334)
T ss_pred ccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCChH
Confidence 5566676 89999999999999999999999998 9999988 379999999999987642 34 99999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEEEEEEeecCCC
Q 019933 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (334)
Q Consensus 241 TncLAPvlKvL~d~fGI~~g~mTTVHA~T~~ 271 (334)
|.+|++.||+|+++|||+++.++||||+++.
T Consensus 135 t~~l~~aL~PL~~~~~i~~v~VsTyQAvSGA 165 (334)
T COG0136 135 TIQLVLALKPLHDAFGIKRVVVSTYQAVSGA 165 (334)
T ss_pred HHHHHHHHHHHHhhcCceEEEEEEeehhhhc
Confidence 9999999999999999999999999999998
No 27
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.84 E-value=2.5e-20 Score=181.79 Aligned_cols=191 Identities=23% Similarity=0.248 Sum_probs=134.2
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEE-eCCCCCHHHHhhhhccccccccCCCeE-EEeCCCeEEECCEEEEEE
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV-NDPFIDAKYMAYMFKYDSTHGVFKGTI-NVVDDSTLEINGKLIKVF 164 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAI-ND~~~d~~~~ayLlkYDSthGkf~~~v-~~e~~~~L~inGk~I~V~ 164 (334)
|++||+|+| +|.+|+.++|+|.++++++|+++ -.. + ..|+-...+ ...+.+.+.-.-+.+.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~----~----------~~G~~~~~~~~~~~~~~~~~~~~~~~v- 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE----R----------SAGKTYGEAVRWQLDGPIPEEVADMEV- 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh----h----------hcCCcccccccccccccccccccceEE-
Confidence 468999999 99999999999999999999998 321 1 111110000 00000000000012333
Q ss_pred eccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC---CCCCeEEeecCccccCC----------CC
Q 019933 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP----------NM 231 (334)
Q Consensus 165 ~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs---~D~p~~V~GVN~~~y~~----------~~ 231 (334)
+..+++.+ . ++|+||+|++...+.+.++...+.|++.+..|+.. .+.|.+++++|++.|.. +.
T Consensus 67 ~~~~~~~~--~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~ 142 (349)
T PRK08664 67 VSTDPEAV--D--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDG 142 (349)
T ss_pred EeCCHHHh--c--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCc
Confidence 22345443 2 78999999999888888877778888543334322 24789999999987632 12
Q ss_pred CEEecCCchhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccc--------hhh
Q 019933 232 NIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGA--------AKV 303 (334)
Q Consensus 232 ~IVSnASCTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGA--------AkA 303 (334)
++|+||+|+|+|+++.+++|++ |||+++.|||+|++|+.++. .+..+.++.|++|+.++. .+.
T Consensus 143 ~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~--------~~~~~~~~~N~~p~~~~~ehrh~~Ei~~~ 213 (349)
T PRK08664 143 FIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYP--------GVPSMDIVDNVIPYIGGEEEKIEKETLKI 213 (349)
T ss_pred eEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcc--------cchhhhhhcCcccccCchhhhhhHHHHHH
Confidence 6999999999999999999999 99999999999999999532 234667899999999987 577
Q ss_pred hhc
Q 019933 304 KYR 306 (334)
Q Consensus 304 v~k 306 (334)
+++
T Consensus 214 l~~ 216 (349)
T PRK08664 214 LGK 216 (349)
T ss_pred hhh
Confidence 654
No 28
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.84 E-value=6.9e-21 Score=188.02 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=125.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+||||.| +|.+|+.++++|+++++|++ ..+ ++|. | . +.. +..+.++|+.+.|. +
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~--------~~~s--s-------~-~s~-g~~~~f~~~~~~v~---~ 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRP--------VFFS--T-------S-QLG-QAAPSFGGTTGTLQ---D 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccE--------EEEE--c-------h-hhC-CCcCCCCCCcceEE---c
Confidence 3899999 99999999999996667873 221 3332 1 1 111 24677888877663 2
Q ss_pred CCCC-CCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCCC--CCE--EecCC
Q 019933 169 PAEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKPN--MNI--VSNAS 238 (334)
Q Consensus 169 P~~i-~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~~--~~I--VSnAS 238 (334)
.++. .|. ++|+||+|.|...+++.+....++|+..+||++.|+ |+|++|++||++.+... ..| |+||+
T Consensus 56 ~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianPN 133 (366)
T TIGR01745 56 AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGGN 133 (366)
T ss_pred Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECcC
Confidence 3333 454 899999999999999999999999954489999873 69999999999988752 457 89999
Q ss_pred chhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCC
Q 019933 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQ 272 (334)
Q Consensus 239 CTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q 272 (334)
|||..|+..|++||++|||+++.+|||||+++.=
T Consensus 134 Cst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG 167 (366)
T TIGR01745 134 CTVSLMLMSLGGLFANDLVEWVSVATYQAASGGG 167 (366)
T ss_pred HHHHHHHHHHHHHHhccCccEEEEEechhhhhcC
Confidence 9999999999999999999999999999999884
No 29
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.81 E-value=1.8e-19 Score=176.98 Aligned_cols=154 Identities=20% Similarity=0.346 Sum_probs=124.9
Q ss_pred ceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
.+||||.| +|.+|+.++|+|.++++|++. ++ +++. | ..++ +.++.+.|+.+.+.. -
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~---~l--------~~~a--S-------~~sa--Gk~~~~~~~~l~v~~-~ 61 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIA---EV--------TLLS--S-------KRSA--GKTVQFKGREIIIQE-A 61 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcc---cE--------EEEE--C-------cccC--CCCeeeCCcceEEEe-C
Confidence 35999999 999999999999987889832 11 1221 1 1122 246777777666633 3
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-----CCCCeEEeecCccccCCCCCEEecCCchhh
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPNMNIVSNASCTTN 242 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-----~D~p~~V~GVN~~~y~~~~~IVSnASCTTn 242 (334)
|+++ |. ++|+||.|+|.-.+++.+....++|+ +||+..+ .|+|+++++||.+.+....+||+||+|+|+
T Consensus 62 ~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~tt 135 (347)
T PRK06728 62 KINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSAL 135 (347)
T ss_pred CHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHHH
Confidence 5543 43 79999999999999999999889998 8898876 258999999999998764479999999999
Q ss_pred hHHHHHHHHhhhcCeeEEEEEEEeecCCC
Q 019933 243 CLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (334)
Q Consensus 243 cLAPvlKvL~d~fGI~~g~mTTVHA~T~~ 271 (334)
++...|++|+++|+|+++.++|++++|+.
T Consensus 136 ~~~laL~PL~~~~~i~~v~V~t~qavSGA 164 (347)
T PRK06728 136 QMVTALQPIRKVFGLERIIVSTYQAVSGS 164 (347)
T ss_pred HHHHHHHHHHHcCCccEEEEEEeeccccc
Confidence 99999999999999999999999999987
No 30
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.77 E-value=2e-18 Score=168.06 Aligned_cols=185 Identities=21% Similarity=0.233 Sum_probs=130.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCH-HHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDA-KYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~-~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+||+|+| +|.+|+.++|++.++++++|+++-+..... +.+..++.+ ..|+.+.+ .+ ..+.+ +..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~-~~~~~~~~--------~~----~~~~~-~~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKW-IEPGDMPE--------YV----RDLPI-VEP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccc-cccCCCcc--------cc----ceeEE-EeC
Confidence 4899999 899999999999999889999985421000 000011100 00000000 00 11222 222
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC---CCCCeEEeecCccccCC---------CCCEEe
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP---------NMNIVS 235 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs---~D~p~~V~GVN~~~y~~---------~~~IVS 235 (334)
+++ .| .++|+||.|++...+.+.+....++|++-+..|+.. +++|.+++++|++.|.. ..++|+
T Consensus 67 ~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVa 142 (341)
T TIGR00978 67 EPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVT 142 (341)
T ss_pred CHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEe
Confidence 333 23 379999999999999999988888999533334332 34899999999987753 125999
Q ss_pred cCCchhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCCCCCcccccccccccCCccc
Q 019933 236 NASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGA 300 (334)
Q Consensus 236 nASCTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTGA 300 (334)
||+|+|+|+.+.+++|+++++|+++.|||+|++|+.++... + .+..+.|++|+..+.
T Consensus 143 nPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ 199 (341)
T TIGR00978 143 NPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGE 199 (341)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHH
Confidence 99999999999999999999999999999999999976531 1 245789999999886
No 31
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.76 E-value=3.2e-18 Score=169.40 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=122.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+||||.| +|.+|+.++|.++++++|++ .++ +++ .|. +. ++..+.++|+.+.++...+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~---~~l--------~~~--ss~--------~s-g~~~~~f~g~~~~v~~~~~ 59 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDL---IEP--------VFF--STS--------QA-GGAAPSFGGKEGTLQDAFD 59 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcE--------EEe--cch--------hh-CCcccccCCCcceEEecCC
Confidence 6999999 99999999996666667882 111 111 110 11 1223467777777755444
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCCC--C--CEEecCCc
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKPN--M--NIVSNASC 239 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~~--~--~IVSnASC 239 (334)
++. |. ++|+||+|+|...+++.+....++|++.+||+..++ |+|++|++||++.+... . ++|+||+|
T Consensus 60 ~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanPnC 135 (369)
T PRK06598 60 IDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGGNC 135 (369)
T ss_pred hhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcCCh
Confidence 443 43 799999999999999999998899966589998872 59999999999988652 2 48999999
Q ss_pred hhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCC
Q 019933 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQ 272 (334)
Q Consensus 240 TTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q 272 (334)
+|++++..|++|+++++|+++.++|++++|+.=
T Consensus 136 ~tt~~~laL~PL~~~~~i~~viVst~qavSGAG 168 (369)
T PRK06598 136 TVSLMLMALGGLFKNDLVEWVSVMTYQAASGAG 168 (369)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeeecccccC
Confidence 999999999999999999999999999999984
No 32
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.76 E-value=8e-18 Score=164.67 Aligned_cols=152 Identities=24% Similarity=0.301 Sum_probs=125.2
Q ss_pred CceeEEEEc-CChhHHHHHHHHHc--CCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEE
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAF--RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~--~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~ 164 (334)
+++||||.| +|.+|+.++|+|.+ +|.++|+.+..- + ++ +..+.+.|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~--------------~---------sa--G~~~~~~~~~~~v~ 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE--------------E---------SA--GETLRFGGKSVTVQ 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc--------------C---------cC--CceEEECCcceEEE
Confidence 467999999 99999999999999 477777666431 1 11 24566777666663
Q ss_pred eccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecC
Q 019933 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKP--NMNIVSNA 237 (334)
Q Consensus 165 ~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~--~~~IVSnA 237 (334)
+++++.|. ++|+||.|+|.-.+++.++...++|+ +||+..++ |.|.++++||.+.++. +.+||+||
T Consensus 58 ---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnP 130 (336)
T PRK08040 58 ---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVA 130 (336)
T ss_pred ---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECC
Confidence 56677785 79999999999999999998889999 78887752 5899999999954432 36799999
Q ss_pred CchhhhHHHHHHHHhhhcCeeEEEEEEEeecCCC
Q 019933 238 SCTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (334)
Q Consensus 238 SCTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~ 271 (334)
+|+|++++..|++|+++++|+++.++|++++|+.
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGA 164 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAH 164 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeecccccc
Confidence 9999999999999999999999999999999988
No 33
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.69 E-value=3e-16 Score=153.51 Aligned_cols=150 Identities=18% Similarity=0.223 Sum_probs=119.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 90 TKVGING-FGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
+||+|.| +|.+|+.++|+|.++ |.++++.+-.. . ++ +..|.+.|+.+.+ +
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~--------------~---------~a--G~~l~~~~~~l~~-~- 57 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS--------------E---------SA--GHSVPFAGKNLRV-R- 57 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc--------------c---------cC--CCeeccCCcceEE-e-
Confidence 7999999 999999999999954 66776666442 0 11 1245555544444 2
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC----CCCCeEEeecCccccCC--CCCEEecCCch
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs----~D~p~~V~GVN~~~y~~--~~~IVSnASCT 240 (334)
+++..+|. ++|+||.|+|...+.+.+...+++|+ +||+..+ .|+|.++++||.+.++. +.+||+||+|+
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~ 132 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSAS 132 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcH
Confidence 23333453 79999999999888888888888998 5787765 36899999999998875 25899999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEEEEEEeecCCC
Q 019933 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (334)
Q Consensus 241 TncLAPvlKvL~d~fGI~~g~mTTVHA~T~~ 271 (334)
|+++...|++|++.|+++++.++|++++|+.
T Consensus 133 ~t~~~laL~PL~~~~~~~~v~v~t~~~vSGa 163 (336)
T PRK05671 133 AVALAVALAPLKGLLDIQRVQVTACLAVSSL 163 (336)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEeecCccc
Confidence 9999999999999999999999999999988
No 34
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.66 E-value=7e-16 Score=151.30 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=119.0
Q ss_pred CceeEEEEc-CChhHHHHHHHHHc--CCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEE
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAF--RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~--~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~ 164 (334)
+++||+|.| +|.+|+.++|+|.+ +|.++++.+-.. + +. +..+.++|+.+.+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~--------------r---------sa--Gk~~~~~~~~~~v- 59 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA--------------R---------SA--GKKVTFEGRDYTV- 59 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc--------------C---------CC--CCeeeecCceeEE-
Confidence 346999999 99999999999998 455666555321 1 11 1234445544444
Q ss_pred eccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCCC------CCE
Q 019933 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKPN------MNI 233 (334)
Q Consensus 165 ~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~~------~~I 233 (334)
+.-+++ .|. ++|+||.|+|.-.+++.+....++|+ +||+..++ +.|.++++||.+.++.. .++
T Consensus 60 ~~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 60 EELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred EeCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 223333 343 79999999999999999998888898 78877762 58999999999988752 249
Q ss_pred EecCCchhhhHHHHHHHHhhhcCeeEEEEEEEeecCCC
Q 019933 234 VSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (334)
Q Consensus 234 VSnASCTTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~ 271 (334)
|+||+|+|++++..|++|+++++|+++.++|++++|+.
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGA 171 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGA 171 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeeccccc
Confidence 99999999999999999999999999999999999987
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.59 E-value=1.9e-14 Score=140.66 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=117.3
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
|++||+|.| +|.+|+.++|.+.++++++++++-+. .... ..+ ...|+.+. +.....+++
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g---~~l--~~~~~~~~--------------~~~~~~~~~ 60 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAG---KPL--SDVHPHLR--------------GLVDLVLEP 60 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccC---cch--HHhCcccc--------------cccCceeec
Confidence 458999999 79999999999999999999998762 1110 000 00011111 000001121
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC------C------------------CCeEEeec
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA------D------------------APMFVVGV 222 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~------D------------------~p~~V~GV 222 (334)
-+ +..+ .++|+||.|++.....+.+...+++|+ +||+.+++ | .|..++++
T Consensus 61 ~~--~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~ 134 (343)
T PRK00436 61 LD--PEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPEL 134 (343)
T ss_pred CC--HHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCcc
Confidence 12 1223 369999999999999999998888887 78877652 2 58999999
Q ss_pred CccccCCCCCEEecCCchhhhHHHHHHHHhhhcCee--EEEEEEEeecCCC
Q 019933 223 NEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL--EGLMTTVHATTAT 271 (334)
Q Consensus 223 N~~~y~~~~~IVSnASCTTncLAPvlKvL~d~fGI~--~g~mTTVHA~T~~ 271 (334)
|.+.+.+ .++|+||+|+|+++...|++|++..+|+ +..++|++++|+.
T Consensus 135 ~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGa 184 (343)
T PRK00436 135 NREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGA 184 (343)
T ss_pred CHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccC
Confidence 9998875 5899999999999999999999999898 8999999999987
No 36
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.56 E-value=4.8e-14 Score=140.13 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=116.1
Q ss_pred cCCccccCCCCCCceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeE
Q 019933 76 EIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL 154 (334)
Q Consensus 76 ~~~~~~~~~~~~M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L 154 (334)
..+++...+ .|++||+|.| +|.+|+.++|.|.++++++|+.+..- ...|+.- ... ..
T Consensus 27 ~~~~~~~~~--~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~--------------~saG~~i---~~~---~~ 84 (381)
T PLN02968 27 SSASSSVKS--EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD--------------RKAGQSF---GSV---FP 84 (381)
T ss_pred ccCCCcccc--ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh--------------hhcCCCc---hhh---Cc
Confidence 344444444 4567999999 99999999999999999998887541 1112110 000 00
Q ss_pred EECCEEEEEEeccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----C--------CCeEEee
Q 019933 155 EINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----D--------APMFVVG 221 (334)
Q Consensus 155 ~inGk~I~V~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D--------~p~~V~G 221 (334)
.+.+..+.-++.-++. +|. ++|+||.|+|.-.+++.+.. ++.|+ +||+..++ + .|..+++
T Consensus 85 ~l~~~~~~~~~~~~~~--~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe 157 (381)
T PLN02968 85 HLITQDLPNLVAVKDA--DFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPE 157 (381)
T ss_pred cccCccccceecCCHH--Hhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcc
Confidence 0111111111112222 243 79999999999888888876 57775 57766642 3 5788888
Q ss_pred cCccc-cC---------CCCCEEecCCchhhhHHHHHHHHhhhcCe--eEEEEEEEeecCCC
Q 019933 222 VNEKT-YK---------PNMNIVSNASCTTNCLAPLAKVVHEEFGI--LEGLMTTVHATTAT 271 (334)
Q Consensus 222 VN~~~-y~---------~~~~IVSnASCTTncLAPvlKvL~d~fGI--~~g~mTTVHA~T~~ 271 (334)
+|.+. |. ...++|+||+|.|+++...|++|+++++| ++..+++++++|+.
T Consensus 158 ~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGA 219 (381)
T PLN02968 158 LQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGA 219 (381)
T ss_pred cchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeecccc
Confidence 88774 32 13579999999999999999999999999 78999999999988
No 37
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.53 E-value=5.8e-14 Score=136.53 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=121.1
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
|++||||.| +|.+|+.++|+|.++++++++++..-. ...+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~---------------------------~~~~------------ 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK---------------------------RKDA------------ 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC---------------------------CCcc------------
Confidence 678999999 999999999999999999988875410 0001
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCC--CCCEEecCCc
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKP--NMNIVSNASC 239 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~--~~~IVSnASC 239 (334)
.+.+..|. ++|+||.|++.-.+++.+....+.|+ +||+.+++ +.|..++++|++..+. ..++|+||.|
T Consensus 42 -~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC 116 (313)
T PRK11863 42 -AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGC 116 (313)
T ss_pred -cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCc
Confidence 11112343 68999999999999999998888888 68877652 5899999999764432 4689999999
Q ss_pred hhhhHHHHHHHHhhhcCeeEEEEEEEeecCCCCCCccCCCCC-CCCc-ccccccccccCCcc
Q 019933 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMK-DWRG-GRGASQNIIPSSTG 299 (334)
Q Consensus 240 TTncLAPvlKvL~d~fGI~~g~mTTVHA~T~~Q~~~D~~~~k-d~R~-~RaA~~NIIPtsTG 299 (334)
.++++...|++|+++-.|++...++++++|+.= .-|..++ +... --....|++|+.-|
T Consensus 117 ~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~S--GAG~~~~~~~~~~~~~~~~n~~~Y~~~ 176 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSGYS--GGGKAMIAAYEAAPDGKAPAFRLYGLG 176 (313)
T ss_pred HHHHHHHHHHHHHHcCCcccCceEEEEEccccc--cCCccchHHHhhhhhhhccCeeeccCC
Confidence 999999999999997666666579999997430 0021110 1110 01146799999877
No 38
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.51 E-value=8.9e-14 Score=136.14 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=114.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCE-EEEEEecc
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGK-LIKVFSKR 167 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk-~I~V~~~~ 167 (334)
+||+|.| +|.+|+.++|.|.++|+++++++-+...... ..+ ...|+.+. +. ...+ ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sag---k~~--~~~~~~l~--------------~~~~~~~-~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAG---KPV--SEVHPHLR--------------GLVDLNL-EPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcC---CCh--HHhCcccc--------------ccCCcee-ecC
Confidence 4899999 8999999999999999999987733210000 000 01111111 10 1111 212
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC----C--------------------CCCeEEeecC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS----A--------------------DAPMFVVGVN 223 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs----~--------------------D~p~~V~GVN 223 (334)
|+++ |.+ ++|+||.|++...+++.+...+++|+ +||+..+ . +.|..++++|
T Consensus 61 ~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n 135 (346)
T TIGR01850 61 DEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH 135 (346)
T ss_pred CHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence 3322 222 79999999999999999998888885 6776654 1 3678999999
Q ss_pred ccccCCCCCEEecCCchhhhHHHHHHHHhhhcCee--EEEEEEEeecCCCC
Q 019933 224 EKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL--EGLMTTVHATTATQ 272 (334)
Q Consensus 224 ~~~y~~~~~IVSnASCTTncLAPvlKvL~d~fGI~--~g~mTTVHA~T~~Q 272 (334)
.+++.. .++|+||+|.|+++...|++|++++.|+ +..++|++++|+.=
T Consensus 136 ~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG 185 (346)
T TIGR01850 136 REEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAG 185 (346)
T ss_pred HHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccC
Confidence 988865 6799999999999999999999998887 79999999999983
No 39
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.44 E-value=7e-14 Score=132.98 Aligned_cols=184 Identities=19% Similarity=0.236 Sum_probs=129.9
Q ss_pred eEE-EEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 91 KVG-ING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 91 kVg-ING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
|+| |.| +|.+|++++-+|.++|.|+|........+.- --|.+ -|+|..+.- |.-.-..+.| .+-+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAG-K~ya~-----a~~wkqt~~------lp~~~~e~~V-~ec~ 71 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAG-KRYAF-----AGNWKQTDL------LPESAHEYTV-EECT 71 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccC-CceEe-----cccchhccc------ccchhhhhhH-hhcC
Confidence 566 999 9999999999999999888755533211100 00111 122222211 1111134445 3446
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccCC-C----------CC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYKP-N----------MN 232 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~~-~----------~~ 232 (334)
++.|. ++|+||...+.....|--..+.++|. +|+|+.+. ++|++|+.||.|.++. . .-
T Consensus 72 ~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~ 145 (361)
T KOG4777|consen 72 ADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGA 145 (361)
T ss_pred hhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCce
Confidence 66664 89999999998888887777888888 89999862 4999999999998864 1 35
Q ss_pred EEecCCchhhhHHHHHHHHhhhc-CeeEEEEEEEeecCCCCCCccCCC-CCCCCcccccccccccCCccch
Q 019933 233 IVSNASCTTNCLAPLAKVVHEEF-GILEGLMTTVHATTATQKTVDGPS-MKDWRGGRGASQNIIPSSTGAA 301 (334)
Q Consensus 233 IVSnASCTTncLAPvlKvL~d~f-GI~~g~mTTVHA~T~~Q~~~D~~~-~kd~R~~RaA~~NIIPtsTGAA 301 (334)
||.|++|+|..+.-.+|+||++| .|++-.++|+||+++. |+. + ...--...||+|.--|--
T Consensus 146 iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGA-----G~apg---v~~vdildnilp~iggee 208 (361)
T KOG4777|consen 146 IIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGA-----GAAPG---VELVDILDNILPGIGGEE 208 (361)
T ss_pred EEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccC-----CcCCC---chHHHHHHhhcCCCCccc
Confidence 99999999998888899999999 5889999999999988 442 1 112235678988766543
No 40
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.43 E-value=4.8e-13 Score=129.66 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=112.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHH--HhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY--MAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~--~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
++||||+|+|+||+..+..+.+.++++++++-|+ |++. +.+-- -||. .... ++..- ++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi--d~es~gla~A~----~~Gi---~~~~--------~~ie~-LL-- 63 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI--DPESDGLARAR----RLGV---ATSA--------EGIDG-LL-- 63 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC--ChhhHHHHHHH----HcCC---Cccc--------CCHHH-HH--
Confidence 6899999999999998888887788999999985 5432 22211 1221 0001 11000 00
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC-CCCCCCeEEeecCccccCC--CCCEEecCCchhhh
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA-PSADAPMFVVGVNEKTYKP--NMNIVSNASCTTNC 243 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa-Ps~D~p~~V~GVN~~~y~~--~~~IVSnASCTTnc 243 (334)
++.+|. ++|+||+|||.....+.+...+++|+ .+|.. |..+.|++|++||.+.... ..++|+|++|.|+.
T Consensus 64 ---~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~ 136 (302)
T PRK08300 64 ---AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP 136 (302)
T ss_pred ---hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence 112343 68999999999999999999999997 55654 4457999999999988764 35899999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEEEeecC
Q 019933 244 LAPLAKVVHEEFGILEGLMTTVHATT 269 (334)
Q Consensus 244 LAPvlKvL~d~fGI~~g~mTTVHA~T 269 (334)
++..++.+++. ++.+.. +||.+.+
T Consensus 137 ~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 137 IVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHhcccCcC-ceeeee-eeehhhc
Confidence 99999998765 888877 8888877
No 41
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.31 E-value=1e-11 Score=120.85 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=108.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
.||+|.| .|-.|..++|+|..+|++|++.+..- + + | ...+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~--------------~-~--~----------------------~~~~ 42 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPD--------------R-R--K----------------------DAAE 42 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecc--------------c-c--c----------------------CcCC
Confidence 4899999 99999999999999999999888652 0 0 0 0011
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-----CCCCeEEeecCccccCC--CCCEEecCCchh
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASCTT 241 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-----~D~p~~V~GVN~~~y~~--~~~IVSnASCTT 241 (334)
++++ + .++|+||.|++.-.+++.+....++|+ +||+.++ .+.|..++++|.+..+. ..++|+||.|.+
T Consensus 43 ~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~a 117 (310)
T TIGR01851 43 RAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYP 117 (310)
T ss_pred HhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHH
Confidence 1111 1 268999999999999999988778888 6787665 25899999998664432 468999999999
Q ss_pred hhHHHHHHHHhhhcCeeEEEEEEEeecCC
Q 019933 242 NCLAPLAKVVHEEFGILEGLMTTVHATTA 270 (334)
Q Consensus 242 ncLAPvlKvL~d~fGI~~g~mTTVHA~T~ 270 (334)
+++...|++|+++..|++...+++++.|+
T Consensus 118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 118 TGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 99999999999987676766799999986
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.25 E-value=6e-11 Score=114.26 Aligned_cols=151 Identities=21% Similarity=0.201 Sum_probs=111.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHH--HhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY--MAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~--~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
++||||+|.|+||+..+..+++.+++++++|-|+ +++. +..--+ +|. . ...++...-+ +
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~--d~es~~la~A~~----~Gi---~--------~~~~~~e~ll-~- 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI--DPESDGLARARE----LGV---K--------TSAEGVDGLL-A- 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC--CcccHHHHHHHH----CCC---C--------EEECCHHHHh-c-
Confidence 3699999999999988777777778999999885 4432 221111 121 1 1111111001 0
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCC--CCCEEecCCchhhhH
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP--NMNIVSNASCTTNCL 244 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~--~~~IVSnASCTTncL 244 (334)
+.++|+|++||+.....+.+...+++|+ .||.-.|..+.|++|+.||.+.... +.++|+++.|.|+.+
T Consensus 62 ---------~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 62 ---------NPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred ---------CCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 1268999999999999999999999996 4455556667899999999988764 468999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEEEeecCC
Q 019933 245 APLAKVVHEEFGILEGLMTTVHATTA 270 (334)
Q Consensus 245 APvlKvL~d~fGI~~g~mTTVHA~T~ 270 (334)
...++.+++...+ ..++||++.+.
T Consensus 132 ~~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 132 VAAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHHhhccccE--EEEEEEEeecc
Confidence 9999999988755 66788998886
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.77 E-value=7.2e-09 Score=86.65 Aligned_cols=112 Identities=29% Similarity=0.299 Sum_probs=77.1
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCH-HHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDA-KYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~-~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
||+|.| +|.+|+.++|.|.++++++++.+-....+. ..+... |+.+.+ ...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~------~~~~~~-------------~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEV------FPHPKG-------------FEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHT------TGGGTT-------------TEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehh------cccccc-------------ccceeEee-cc
Confidence 799999 999999999999999999998886531101 111111 111111 11223322 23
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC-----CCCeEEeecCccccC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-----DAPMFVVGVNEKTYK 228 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~-----D~p~~V~GVN~~~y~ 228 (334)
++.+ .++|+||.|++...+++.+...++.|+ .||+..+. +.|+++++||.+.+.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 389999999999999999999999999 78877652 489999999987653
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.07 E-value=1.6e-05 Score=78.85 Aligned_cols=141 Identities=21% Similarity=0.258 Sum_probs=92.9
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCE-EEEEEe
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGK-LIKVFS 165 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk-~I~V~~ 165 (334)
|++||+|.| .|-.|-.++|.|.++|++|+..+... ++ .|+--.++ .....|- .++ ++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~----~~----------~g~~~~~~------~p~l~g~~~l~-~~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR----ER----------AGKPVSDV------HPNLRGLVDLP-FQ 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech----hh----------cCCchHHh------Ccccccccccc-cc
Confidence 568999999 99999999999999999996555432 00 11100000 0001110 011 12
Q ss_pred ccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCC----C-------------C----CeEEeec--
Q 019933 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA----D-------------A----PMFVVGV-- 222 (334)
Q Consensus 166 ~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~----D-------------~----p~~V~GV-- 222 (334)
..|++.+ ...++|+||-|++--.+++.+...++.|+| ||+.+.+ | . .--|||.
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 2344444 233689999999999999999999999995 6755431 0 0 2455553
Q ss_pred -CccccCCCCCEEecCCchhhhHHHHHHHHhhh
Q 019933 223 -NEKTYKPNMNIVSNASCTTNCLAPLAKVVHEE 254 (334)
Q Consensus 223 -N~~~y~~~~~IVSnASCTTncLAPvlKvL~d~ 254 (334)
|.+++. .-+.|+||-|-.+|.-..+++|-++
T Consensus 136 l~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 136 LHREKIR-GAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred cCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc
Confidence 444444 3589999999999988888888766
No 45
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.03 E-value=1.1e-05 Score=66.95 Aligned_cols=111 Identities=24% Similarity=0.222 Sum_probs=68.0
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
||+|.| .|++|+.+++.+.+.++++++++-+. +.+ ..-.++ ..|++ + . .+ ++ .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~--~~~-~~~~~~--~~~~~------------~--~--~~-~~--~~~ 56 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS--ARS-AGKRVS--EAGPH------------L--K--GE-VV--LEL 56 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec--hhh-cCcCHH--HHCcc------------c--c--cc-cc--ccc
Confidence 689999 79999999999999888999999442 110 000000 00110 0 0 00 01 112
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHH---HHHHcCCCEEEEeCCC-----CCCCeEEeecCcccc
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKAS---AHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTY 227 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~---~hl~aGaKkVIISaPs-----~D~p~~V~GVN~~~y 227 (334)
+...|.+.++|+||-|++.-...+... ..++.|+ +||+..+ .|.|.++++||.+.+
T Consensus 57 ~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 57 EPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred ccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 222344458999999999877776433 2234554 7886654 257999999998754
No 46
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.03 E-value=4.8e-06 Score=79.98 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=88.1
Q ss_pred CceeEEEEcCChhHHHHHHHHHcC--CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEe
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~--~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~ 165 (334)
|+.||||+|+|.||+.+.+.+... +.+++++|++. +++....+. + . ..+
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~~~~~-----------------~-~-------~~~-- 51 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLPPALA-----------------G-R-------VAL-- 51 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHhh-----------------c-c-------Ccc--
Confidence 678999999999999999998764 34899999885 222111111 0 0 111
Q ss_pred ccCCCCC-CCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-CCCCeEEeecCccccC---CCCCEEecCCch
Q 019933 166 KRDPAEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-ADAPMFVVGVNEKTYK---PNMNIVSNASCT 240 (334)
Q Consensus 166 ~~dP~~i-~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-~D~p~~V~GVN~~~y~---~~~~IVSnASCT 240 (334)
..+.+++ .| ..|+|+||.|.-.-+|.++..|++|+.-+|+|-.. +|. -| ..+..+ ....-|--+|=-
T Consensus 52 ~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~-~~----~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 52 LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADD-AL----RARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCH-HH----HHHHHHHHHhCCCEEEEeChH
Confidence 1344443 44 68999999999999999999999999988887542 331 11 111111 012223334444
Q ss_pred hhhHHHHHHHHhhhcCeeEEEEEEEeec
Q 019933 241 TNCLAPLAKVVHEEFGILEGLMTTVHAT 268 (334)
Q Consensus 241 TncLAPvlKvL~d~fGI~~g~mTTVHA~ 268 (334)
.-.|--+-. . ...|+.++.+||.-..
T Consensus 124 igGlD~l~a-a-~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 124 IAGLDYLQA-V-AGRDDAEVVYESRKPV 149 (267)
T ss_pred HHhHHHHHH-h-hccCceEEEEEEecCh
Confidence 444433322 2 3468999999887444
No 47
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.88 E-value=1.4e-05 Score=75.82 Aligned_cols=92 Identities=25% Similarity=0.309 Sum_probs=61.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+||||.|+|+||+.+++.+.+.+++++++|-+.....+...- .+ +..+.++ .|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---------------------~~---~~~~~~~--~d~ 55 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---------------------AL---GEAVRVV--SSV 55 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---------------------hh---ccCCeee--CCH
Confidence 699999999999999999988888999888643111111000 00 0012222 233
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
+++ +..+|+|+|||+.-...+.+...|++|.. |++-.|
T Consensus 56 ~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 56 DAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred HHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 444 24689999999998888999999999864 444333
No 48
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.64 E-value=8.7e-05 Score=70.54 Aligned_cols=95 Identities=20% Similarity=0.355 Sum_probs=61.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+||+|+| +|++|+.+++.+.+.+++++|++-|. .+++.. .+|. +.+.+ +.-.| +.++ .|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~-~~~~~~----~~~~--~~~~~---------~~~~g--v~~~--~d 61 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER-HGSSLQ----GTDA--GELAG---------IGKVG--VPVT--DD 61 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCcccc----CCCH--HHhcC---------cCcCC--ceee--CC
Confidence 6999999 89999999999998889999999873 122110 0010 10000 00001 2222 23
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.+++ ...+|+|||+|......+.+...++.|.. ||+
T Consensus 62 ~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 62 LEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred HHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 3333 13589999999988888888888998864 445
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.64 E-value=9.6e-05 Score=72.87 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=62.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
++||||.|+|+||+.+++++.+++++++|+|-|. .+++.+.- + +.++...|
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr-~~~~~~~~-------------------~---------~~v~~~~d 53 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR-RGAETLDT-------------------E---------TPVYAVAD 53 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC-CcHHHHhh-------------------c---------CCccccCC
Confidence 4899999999999999999998899999999875 22221110 0 01111111
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
..++ ..++|+|+-|++.....+.+...|++|.. ||-|.+
T Consensus 54 ~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~ 92 (324)
T TIGR01921 54 DEKH---LDDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFD 92 (324)
T ss_pred HHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCC
Confidence 1111 13689999999999999999999999874 455543
No 50
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.58 E-value=0.00026 Score=69.62 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=30.7
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~---------d~eiVAIND~ 122 (334)
|++||+|.|||.||+.+++.+.+++ +++||+|-|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 6789999999999999999987653 6999999874
No 51
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.50 E-value=0.00037 Score=66.54 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=59.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHcC-CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~-~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
++||||+|+|+||+.+++.+... +++++++|-|. +++...-+.+ -+|. . .. ..
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~---~----------------~~--~~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR---P----------------PP--VV 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC---C----------------cc--cC
Confidence 58999999999999999998873 67999999885 4443222111 0110 0 00 01
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaK 204 (334)
+++++- .++|+|++|++...-.|.+...+++|..
T Consensus 60 ~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 60 PLDQLA---THADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred CHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 233332 1579999999998888888888998853
No 52
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.33 E-value=0.00042 Score=65.45 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=56.4
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+||+|+|. |+||+.+++.+.+.+++++|++-|. +++.... + + . ..+.+ ..|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~--~~~~~~~----------~------~-~-------~~i~~--~~d 53 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR--PGSPLVG----------Q------G-A-------LGVAI--TDD 53 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec--CCccccc----------c------C-C-------CCccc--cCC
Confidence 69999996 9999999999988888999999885 2211100 0 0 0 00111 122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaK 204 (334)
.+++- . ++|+|+|+|......+.+...+++|..
T Consensus 54 l~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~ 86 (257)
T PRK00048 54 LEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP 86 (257)
T ss_pred HHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC
Confidence 22221 1 589999999877778888888899874
No 53
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.32 E-value=0.00062 Score=64.58 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=60.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+||||+|+|+||+.+++.+.+.+ ++++++|-|. +++....+.+ .+| . .++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~---~~~-----------------~---~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS---KTG-----------------A---KAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH---hcC-----------------C---eeE--CC
Confidence 59999999999999999988764 7999999885 4443333221 000 0 111 22
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.+++- .++|+|++|++...-.+.+...+++|.. |++
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv 90 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VII 90 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEE
Confidence 33332 2689999999988888888888888864 444
No 54
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.31 E-value=0.0007 Score=64.26 Aligned_cols=149 Identities=26% Similarity=0.209 Sum_probs=87.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcC-CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~-~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
++|||+|+|.||..+++.+.+. -+|+++++-|- +.+..-.+.+ + +.++ .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~~--~------------------~~~~--------~ 50 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELEA--S------------------VGRR--------C 50 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHHh--h------------------cCCC--------c
Confidence 4899999999999999998764 36999999883 5554444432 1 1110 0
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-CCCCeEEeecCccccCCCCCEEecCCchhhhHHHH
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-ADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 247 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPv 247 (334)
+.++|=.-..+|+++||.+.---+|...+.|++|..-+|+|... +| |-+.--. .+.......-|--+|-..-+|--+
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad-~~l~erl-~~lak~~~~rv~~pSGAiGGlD~l 128 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALAD-EGLRERL-RELAKCGGARVYLPSGAIGGLDAL 128 (255)
T ss_pred cccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccC-hHHHHHH-HHHHhcCCcEEEecCccchhHHHH
Confidence 11111111378999999998888888889999999988887753 22 1010000 000000112222333333333222
Q ss_pred HHHHhhhcCeeEEEEEEEeecCCCC
Q 019933 248 AKVVHEEFGILEGLMTTVHATTATQ 272 (334)
Q Consensus 248 lKvL~d~fGI~~g~mTTVHA~T~~Q 272 (334)
+.+. --+|+++..||.-....-|
T Consensus 129 -~aar-~g~i~~V~lttrKpp~~lg 151 (255)
T COG1712 129 -AAAR-VGGIEEVVLTTRKPPAELG 151 (255)
T ss_pred -HHhh-cCCeeEEEEEeecChHHhC
Confidence 2221 2389999999997776444
No 55
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0011 Score=63.98 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=63.1
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
|+|||+|+| .||+||.++|++.+.+++++++.-+.. +. ...|+-.+++-. ++-..+.++.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~-~~----------~~~g~d~ge~~g-------~~~~gv~v~~- 61 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRP-GS----------LSLGSDAGELAG-------LGLLGVPVTD- 61 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecC-Cc----------cccccchhhhcc-------ccccCceeec-
Confidence 347999999 699999999999999999999887641 11 111221111100 0001122211
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
| +.-...+.|++||-|-.-.+.+.++..++.|.+-||=|..
T Consensus 62 -~---~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 62 -D---LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred -c---hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCC
Confidence 1 1122347899999888888888888888888654443544
No 56
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.12 E-value=0.0006 Score=67.12 Aligned_cols=35 Identities=40% Similarity=0.637 Sum_probs=29.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~---------d~eiVAIND~ 122 (334)
|++||+|.|||.||+.++|.+.++. +++|++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 6789999999999999999987631 4889999874
No 57
>PRK11579 putative oxidoreductase; Provisional
Probab=97.11 E-value=0.002 Score=62.58 Aligned_cols=93 Identities=24% Similarity=0.399 Sum_probs=63.9
Q ss_pred ceeEEEEcCChhHHH-HHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgINGfGrIGR~-vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
++||||+|+|.||+. .++++...++++++||-|+ +.+...- +| .. +.++ .
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~~-------~~----------------~~~~--~ 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--DW-------PT----------------VTVV--S 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--hC-------CC----------------Ccee--C
Confidence 589999999999984 5677777778999999985 4443220 11 00 0111 1
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
|.+++ -.+.++|+|+-||+.....+.+...+++| |-|++--|-
T Consensus 55 ~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 55 EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 12211 01236899999999999999999999998 567777773
No 58
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.08 E-value=0.00068 Score=57.29 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=30.9
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
|||+|+|+ ||+||.+.+.+.++++++||++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence 59999997 9999999999999999999999875
No 59
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.97 E-value=0.001 Score=67.39 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=56.1
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGK 159 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~---------d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk 159 (334)
++||||.|+|.||+.+++.+.++. ++++++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~~-~~~-------------~--------~~~- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEKD-RGV-------------D--------LPG- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhhc-cCC-------------C--------Ccc-
Confidence 589999999999999999886642 5889999774 22110 000 0 000
Q ss_pred EEEEEeccCCCCCCCCccCccEEEeccCCC-CCHHHHHHHHHcCCCEEEEeCC
Q 019933 160 LIKVFSKRDPAEIPWGDYGVDYVVESSGVF-TTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 160 ~I~V~~~~dP~~i~W~~~gvDiVvEsTG~f-~t~e~a~~hl~aGaKkVIISaP 211 (334)
..++ .|++++ ..+.++|+|+||||.. ...+.....|++|. -||..++
T Consensus 58 -~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 -ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred -ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 0111 122222 1234789999999864 33566767788874 4444344
No 60
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.94 E-value=0.0021 Score=63.39 Aligned_cols=33 Identities=36% Similarity=0.666 Sum_probs=28.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcC-------CCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFR-------DDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~-------~d~eiVAIND~ 122 (334)
|||+|.|||.||+.+++.+.++ .+++||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 3999999999999999998874 35889999874
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.86 E-value=0.0015 Score=64.87 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=28.6
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC---------CceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~---------d~eiVAIND 121 (334)
|+++|+|.|||.||+.+++.+.++. ++.|++|-+
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~ 43 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG 43 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe
Confidence 5689999999999999999987542 578888866
No 62
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.84 E-value=0.0039 Score=60.75 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=63.3
Q ss_pred CCceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEe
Q 019933 87 DGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (334)
Q Consensus 87 ~M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~ 165 (334)
.|.+||.||| .||+|+.+++++.+ ++|++|+..|+..+.+ +-.+.+.|..+.++.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~-----------------------~~~~~~~g~~v~~~~ 64 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGV-----------------------GVTVEVCGVEVRLVG 64 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccc-----------------------cccceeccceeeeec
Confidence 3457999999 99999999999999 8899999877511000 011234444566652
Q ss_pred ccCCCCCC--CCccCcc-EEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 166 KRDPAEIP--WGDYGVD-YVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 166 ~~dP~~i~--W~~~gvD-iVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
..|.++.- -....+| ++||-|-.-...+..+..++.|..-||=|..
T Consensus 65 ~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 65 PSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred CccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 22222110 0111478 7888777666667777777788765444443
No 63
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.78 E-value=0.003 Score=51.36 Aligned_cols=93 Identities=31% Similarity=0.416 Sum_probs=66.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcC-CCceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~-~d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+||||+|+|.+|+..++.+.+. +++++++|-|+ +++......+ |.. . .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~~~~~-------~-~~----------------~-- 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFAEKYGI-------P-VY----------------T-- 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHHHHTTS-------E-EE----------------S--
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHHHHhcc-------c-ch----------------h--
Confidence 5999999999999999988877 78999999996 5543322211 111 1 11 0
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
|.+++ ..+.++|+|+-||+.....+.+..-+++|. .|++--|-
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 11111 112378999999999999999999999988 67787774
No 64
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.60 E-value=0.033 Score=52.15 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=30.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
+.+||+|-|||.||+.+++.|.+. ...||+|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 457999999999999999999887 4999999984
No 65
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0095 Score=59.21 Aligned_cols=35 Identities=40% Similarity=0.628 Sum_probs=29.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC---------CceEEEEeCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~---------d~eiVAIND~ 122 (334)
|++||+|.|||.||+.++|.+.+++ ++++++|-+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 5789999999999999999998752 4788888774
No 66
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.00 E-value=0.062 Score=55.52 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=66.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCC---eEE--ECCE--
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGK-- 159 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~---~L~--inGk-- 159 (334)
.||+|.| +|.||...++.+.+++ +|+++++.- ....+.++-..+ |.. .-+.+.++. .|. ..+.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaa-g~Ni~lL~~q~~~f~p------~~v~v~d~~~~~~l~~~l~~~~~ 130 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAA-GSNVTLLADQVRKFKP------KLVAVRNESLVDELKEALADLDD 130 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEEC-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHhhcCCCC
Confidence 5999999 8999999999998764 599999875 345555544332 221 112221110 000 0110
Q ss_pred EEEEEecc-CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 160 LIKVFSKR-DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 160 ~I~V~~~~-dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.++++... +..++- ....+|+|+++.+.+...+..-..+++| |+|.+.
T Consensus 131 ~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALA 179 (454)
T PLN02696 131 KPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 179 (454)
T ss_pred CcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEe
Confidence 13333311 111110 1226899999999998888888889998 666553
No 67
>PRK10206 putative oxidoreductase; Provisional
Probab=95.85 E-value=0.021 Score=55.92 Aligned_cols=94 Identities=23% Similarity=0.248 Sum_probs=60.8
Q ss_pred eeEEEEcCChhHH-HHHHHHHcC-CCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGINGFGRIGR-LVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgINGfGrIGR-~vlRal~~~-~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+||||+|+|+|++ ..++.+... ++++|+||-|+ +.+-....-+|. + +.++ .
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~--~~~~~~~~~~~~---------------------~--~~~~--~ 54 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR--HAKPEEQAPIYS---------------------H--IHFT--S 54 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC--ChhHHHHHHhcC---------------------C--Cccc--C
Confidence 7999999999875 346766443 57999999996 333211111111 0 0111 1
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
|.+++ ..+.++|.|+-||+.....+.+...+++| |-|++--|-
T Consensus 55 ~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 55 DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 11111 12237899999999999999999999998 567777773
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.81 E-value=0.011 Score=59.91 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=66.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCC---eEE--ECCEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGKLI 161 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~---~L~--inGk~I 161 (334)
.||+|.| +|.||+..++++...+ .|+|+++.- ..+.+.+.-+.+ |.. .-+-+.++. .|. +.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa-~~n~~~l~~q~~~f~p------~~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSA-GKNVELLAEQAREFRP------KYVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHhhccCCc
Confidence 4999999 9999999999987654 699999973 135554444432 222 112221110 010 112123
Q ss_pred EEEeccC-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 162 KVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 162 ~V~~~~d-P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
+++...+ ..++ -...++|+|+++++.+...+..-..+++| |+|.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 3444332 1111 11236999999999999999888889999 55555
No 69
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.80 E-value=0.045 Score=56.38 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=60.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CCHHHHhhhhcccccc-ccCCCeEEEeCCCeEEECCE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDSTH-GVFKGTINVVDDSTLEINGK 159 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~--------~d~~~~ayLlkYDSth-Gkf~~~v~~e~~~~L~inGk 159 (334)
-.||+|-|||.||+.+++.|.+.+ ..||+|.|.. .|++. |++|--.+ |.+.+ +.+. . +.+
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~~---~~~~--~--~~~ 300 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRISE---YAEE--F--GAE 300 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchhh---hhhh--c--CCe
Confidence 469999999999999999998875 9999998821 14433 33322111 21110 0000 0 001
Q ss_pred EEEEEeccCCCCCCCCccCccEEEecc-CCCCCHHHHHHHHHcCCCEEEE
Q 019933 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 160 ~I~V~~~~dP~~i~W~~~gvDiVvEsT-G~f~t~e~a~~hl~aGaKkVII 208 (334)
. -++++ .| +..+|+.+.|+ +.-.+.+.+..+++.+||- |+
T Consensus 301 ---~---i~~~~-i~-~~d~DVliPaAl~n~It~~~a~~i~~~~aki-Iv 341 (445)
T PRK09414 301 ---Y---LEGGS-PW-SVPCDIALPCATQNELDEEDAKTLIANGVKA-VA 341 (445)
T ss_pred ---e---cCCcc-cc-ccCCcEEEecCCcCcCCHHHHHHHHHcCCeE-EE
Confidence 1 11222 24 35789999996 5566778888887777753 44
No 70
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.80 E-value=0.14 Score=47.64 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=30.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
..||+|-|||.+|+.+.+.|.+.+ ..+|+|.|.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G-~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEG-GKVLAVSDP 55 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEEcC
Confidence 469999999999999999999874 899999996
No 71
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.78 E-value=0.0014 Score=54.00 Aligned_cols=83 Identities=29% Similarity=0.356 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHcCC---CceEEEEeCCC--CCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 96 GFGRIGRLVLRVAAFRD---DVDVVAVNDPF--IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 96 GfGrIGR~vlRal~~~~---d~eiVAIND~~--~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
|||.||+.+++.+.++. +++|++|-+.. .+.+....+ . + .... .+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~-------~-~~~~----------~~~~ 52 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P-------D-EAFT----------TDLE 52 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T-------H-SCEE----------SSHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c-------c-cccc----------CCHH
Confidence 89999999999999875 79999997741 000000000 0 0 0000 1111
Q ss_pred C-CCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 171 E-IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 171 ~-i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
+ +.+ ..+|+|||||+.-...+.....|+.|. -||++
T Consensus 53 ~~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 53 ELIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp HHHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred HHhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 1 111 168999999998777777778888887 45544
No 72
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.63 E-value=0.018 Score=58.04 Aligned_cols=93 Identities=28% Similarity=0.379 Sum_probs=56.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeE---EECCEEEEEEe
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL---EINGKLIKVFS 165 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L---~inGk~I~V~~ 165 (334)
++|||++|-|..|+-++-....-+.|++|||.|...+....+ ||..++.-...++..+-.++ +-.| +|.+..
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~aG-Ki~vT~ 91 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIEAG-KIAVTD 91 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHhcC-cEEEec
Confidence 489999999999998777776667899999999765554444 46655543322222100000 0112 233321
Q ss_pred ccCCCCCCCCccCccEEEeccCCC
Q 019933 166 KRDPAEIPWGDYGVDYVVESSGVF 189 (334)
Q Consensus 166 ~~dP~~i~W~~~gvDiVvEsTG~f 189 (334)
|. ++-.....+|+|||+||.-
T Consensus 92 --D~-~~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 92 --DA-ELIIANDLIDVIIDATGVP 112 (438)
T ss_pred --ch-hhhhcCCcceEEEEcCCCc
Confidence 22 2223344799999999964
No 73
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.51 E-value=0.024 Score=54.99 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=56.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe-CCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec-
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK- 166 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN-D~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~- 166 (334)
+||.||| .|++||.+++++.. ++|++|+.. |+ . + . +++...+.|..|.+..-
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~----~-----------~---~------~~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGG----E-----------E---E------AENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccc----c-----------c---c------ccchhhhcccceeeeccc
Confidence 5899999 99999999999888 789999862 21 0 0 0 00112233334444211
Q ss_pred ---cCCCCCCCCccCcc-EEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 167 ---RDPAEIPWGDYGVD-YVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 167 ---~dP~~i~W~~~gvD-iVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
.+.+.+. +...| ++||-|-.-...+.++..++.|..-|+=+..
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGTTG 102 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcCCC
Confidence 1222221 11267 8888777776777777777788754443433
No 74
>PLN02477 glutamate dehydrogenase
Probab=95.47 E-value=0.15 Score=52.04 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=29.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
.||+|-|||.||+.+++.|.+.+ ..||||.|.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~ 238 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI 238 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence 59999999999999999998875 999999885
No 75
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.22 E-value=0.095 Score=49.83 Aligned_cols=96 Identities=26% Similarity=0.320 Sum_probs=63.7
Q ss_pred CceeEEEEcCChhHH-HHHHHHHcCCC-ceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEe
Q 019933 88 GNTKVGINGFGRIGR-LVLRVAAFRDD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (334)
Q Consensus 88 M~ikVgINGfGrIGR-~vlRal~~~~d-~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~ 165 (334)
|++||||+|.|.|++ ..++++.+.++ +++|+|-|+ +++....+.+ .||. . ..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a~---~~~~---~----------------~~~~ 57 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFAE---EFGI---A----------------KAYT 57 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHHH---HcCC---C----------------cccC
Confidence 468999999997765 57888887776 799999885 5554333322 1110 0 0000
Q ss_pred ccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 166 ~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
|.+++ -.+.++|+|+=||+.....+.+...|++|. -|++--|
T Consensus 58 --~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 58 --DLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred --CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 11100 011258999999999999999999999986 5677666
No 76
>PLN02700 homoserine dehydrogenase family protein
Probab=95.16 E-value=0.038 Score=55.81 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=28.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC--------CceEEEEeCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVNDP 122 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~--------d~eiVAIND~ 122 (334)
|+++|+|.|+|.||+.+++.+.++. ++.|++|.+.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 3689999999999999999876532 4778888663
No 77
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.15 E-value=0.2 Score=48.06 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=36.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC--------CCCHHHHhhhhcccc
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDS 137 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~--------~~d~~~~ayLlkYDS 137 (334)
.||+|-|||.||+.+.+.|.+.+ ..||+|.|. ..|++.+..|++|+.
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~ 93 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELG-AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKE 93 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCceEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999998875 999999872 234555555555544
No 78
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.92 E-value=0.049 Score=51.66 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=51.0
Q ss_pred CccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCC--CCCEEecCCchhhhHHHHHHHHhh
Q 019933 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP--NMNIVSNASCTTNCLAPLAKVVHE 253 (334)
Q Consensus 178 gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~--~~~IVSnASCTTncLAPvlKvL~d 253 (334)
++|+|||+|......+.+.++.++|.+.+=+ .|.+=-|-+|+-||.+.-.. +-+.| .|-..+--|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idl-tpaaigp~vvp~~n~~eh~~a~nvnmv---tcggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDL-TPAAIGPYVVPVVNLEEHVDALNVNMV---TCGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeec-chhccCCeeccccchHHhcCCCCcceE---eecCcccchhhhhhhh
Confidence 6789999999999999999999999954222 34343689999999876543 33444 4555555666665554
No 79
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.70 E-value=0.082 Score=49.21 Aligned_cols=99 Identities=23% Similarity=0.234 Sum_probs=60.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhc--cccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK--YDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlk--YDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+++.|+|.|++|+.++|.|.+++ .+++.|-+ |.+.....++ +|. .-+..++....++.+-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT--------------HVVIGDATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce--------------EEEEecCCCHHHHHhc
Confidence 38999999999999999999875 77777754 4554433222 221 0122222222222221
Q ss_pred CCCCCCCCccCccEEEeccCCCCCH-HHHHHHHH-cCCCEEEEeCCCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTI-AKASAHMK-GGAKKVVISAPSA 213 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~-e~a~~hl~-aGaKkVIISaPs~ 213 (334)
. -..+|+|+=+||..... -.+..+++ -|.+++|.-+.+.
T Consensus 63 g-------i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 63 G-------IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred C-------CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 1 12679999999985444 33344444 6999988876653
No 80
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.65 E-value=0.029 Score=61.54 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=28.8
Q ss_pred CCceeEEEEcCChhHHHHHHHHHcCC--------CceEEEEeC
Q 019933 87 DGNTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVND 121 (334)
Q Consensus 87 ~M~ikVgINGfGrIGR~vlRal~~~~--------d~eiVAIND 121 (334)
.++++|+|.|||.||+.+++.+.++. ++.|++|-+
T Consensus 463 ~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~ 505 (819)
T PRK09436 463 DQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN 505 (819)
T ss_pred cccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 35689999999999999999987542 477888865
No 81
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.41 E-value=0.055 Score=48.13 Aligned_cols=31 Identities=39% Similarity=0.597 Sum_probs=26.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+||+.+.+.+...+ ++|.+.+.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 67 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYDR 67 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEEEcCCcCeEeeeeecCC-ceeEEecc
Confidence 48999999999999999998775 89888876
No 82
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.38 E-value=0.036 Score=60.86 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=28.9
Q ss_pred CCceeEEEEcCChhHHHHHHHHHcCC---------CceEEEEeC
Q 019933 87 DGNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVND 121 (334)
Q Consensus 87 ~M~ikVgINGfGrIGR~vlRal~~~~---------d~eiVAIND 121 (334)
.+.++|+|.|||.||+.++|.+.++. ++.|++|-+
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 35689999999999999999987642 477888865
No 83
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.10 E-value=0.27 Score=50.96 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=62.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CCHHHHhhhhcccccc-ccCCCeEEEeCCCeEEECCEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDSTH-GVFKGTINVVDDSTLEINGKL 160 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~--------~d~~~~ayLlkYDSth-Gkf~~~v~~e~~~~L~inGk~ 160 (334)
.+|+|-|||.+|+.+.+.|.+.+ ..||+|.|.. .|.+.+.+|++|-..+ |+...-.. . ..|.
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~G-akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~------~-~~~a- 308 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLG-AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAK------H-SSTA- 308 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhh------c-cCCc-
Confidence 59999999999999999998875 8999999863 2355665655443221 21110000 0 0010
Q ss_pred EEEEeccCCCCCCCCccCccEEEec-cCCCCCHHHHHHHHHcCCCE
Q 019933 161 IKVFSKRDPAEIPWGDYGVDYVVES-SGVFTTIAKASAHMKGGAKK 205 (334)
Q Consensus 161 I~V~~~~dP~~i~W~~~gvDiVvEs-TG~f~t~e~a~~hl~aGaKk 205 (334)
+.. ++ +=.|. ..+|+.+=| ++.-.+.+.+..-++.|||-
T Consensus 309 -~~~---~~-~~~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 309 -KYV---PG-KKPWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred -EEe---CC-cCccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 111 11 12364 578888876 56677778887766788864
No 84
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.92 E-value=0.31 Score=44.50 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
.+|+|.|||++|+.+.+.|.+.+ .+|+ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 48999999999999999998875 7888 5553
No 85
>PLN00016 RNA-binding protein; Provisional
Probab=93.47 E-value=0.23 Score=48.65 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCCceeEEEE----c-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 86 SDGNTKVGIN----G-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 86 ~~M~ikVgIN----G-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
..|+.||.|. | +|.||+.+++.|.+++ .+|.++..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 3455699999 8 9999999999999875 78877764
No 86
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.47 E-value=0.17 Score=46.35 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=60.1
Q ss_pred eeEEEEcCChhHHHHHHHHH-cCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~-~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
.||+|.|.|.+|+.+++.+. ...+++++++=|. +++.. | . .++|.++ ....+
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~------------~-~i~g~~v--~~~~~ 137 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------G------------T-KIGGIPV--YHIDE 137 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------C------------C-EeCCeEE--cCHHH
Confidence 59999999999999988643 3346999998763 22110 0 0 1123222 11122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
..++ ..+.++|+|+.|++.....+....-+++|.+.|+...|-
T Consensus 138 l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 138 LEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 2221 133479999999998776666777778998776665664
No 87
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.34 E-value=0.074 Score=52.37 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=55.0
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCCC
Q 019933 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAE 171 (334)
Q Consensus 92 VgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~~ 171 (334)
|.|.|.|.||+.+++.|.++.+++-|.|-| .+.+.+..+.+.- . ...++. ......|++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~--r~~~~~~~~~~~~--~---~~~~~~-------------~~~d~~~~~~ 60 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVAD--RNPEKAERLAEKL--L---GDRVEA-------------VQVDVNDPES 60 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEE--SSHHHHHHHHT----T---TTTEEE-------------EE--TTTHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEE--CCHHHHHHHHhhc--c---ccceeE-------------EEEecCCHHH
Confidence 689999999999999999987773344555 3566555554210 0 001111 1111123222
Q ss_pred CCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 172 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 172 i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
+.=--.+.|+||.|.|.|....-++.-++.|+. .++
T Consensus 61 l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~--yvD 96 (386)
T PF03435_consen 61 LAELLRGCDVVINCAGPFFGEPVARACIEAGVH--YVD 96 (386)
T ss_dssp HHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E--EEE
T ss_pred HHHHHhcCCEEEECCccchhHHHHHHHHHhCCC--eec
Confidence 110012679999999999888888888999994 455
No 88
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.45 E-value=1.3 Score=42.67 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|++||+|.|.|.||..+...|.+.+ .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC-CcEEEEec
Confidence 5579999999999999999998874 56665653
No 89
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.16 E-value=0.31 Score=46.46 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 899999 9999999999999875 78888864
No 90
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.07 E-value=0.33 Score=46.05 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
||+|+|.|.||..+.+.+.+.+ ++|.+++- +.+.+..+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~---~~~~~~~a 39 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSR---RESTCERA 39 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEEC---CHHHHHHH
Confidence 8999999999999999998774 77777753 44444333
No 91
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.01 E-value=0.18 Score=49.11 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=26.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-.+|||.|||+|||.+.+.+...+ ++|.+.+-
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC-CEEEEECC
Confidence 358999999999999999987664 78777653
No 92
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.97 E-value=1.5 Score=45.44 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=59.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC--------CCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL 160 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~--------~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~ 160 (334)
-.||+|-|||.+|+.+++.|.+.+ ..||+|.|. ..|++.+.+|++|-..+|..-... .+ .+.|.
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G-akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~-~~-----~~~ga- 299 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG-AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPY-AE-----KFPGS- 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHH-Hh-----cCCCC-
Confidence 369999999999999999998875 899997543 245555667777644333211000 00 01110
Q ss_pred EEEEeccCCCCCCCCccCccEEEec-cCCCCCHHHHHHHHHcCCCE
Q 019933 161 IKVFSKRDPAEIPWGDYGVDYVVES-SGVFTTIAKASAHMKGGAKK 205 (334)
Q Consensus 161 I~V~~~~dP~~i~W~~~gvDiVvEs-TG~f~t~e~a~~hl~aGaKk 205 (334)
+.. ++++ .| +..+|+.+=| ++.-.+.+.+..-.+.+||-
T Consensus 300 -~~i---~~~~-~~-~~~cDVliPcAl~n~I~~~na~~l~~~~ak~ 339 (445)
T PRK14030 300 -TFF---AGKK-PW-EQKVDIALPCATQNELNGEDADKLIKNGVLC 339 (445)
T ss_pred -EEc---CCcc-ce-eccccEEeeccccccCCHHHHHHHHHcCCeE
Confidence 010 1111 24 2467776655 56666667766655666643
No 93
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.80 E-value=0.2 Score=48.97 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+|||.+.|.+...+ ++|++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fg-m~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 48999999999999999997664 88877654
No 94
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=91.55 E-value=0.35 Score=45.19 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=65.1
Q ss_pred eeEEEEcCChhHHHHHHHHHc-CCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~-~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
.+|.|+|.|.+||.++.--+. +.+|+|+++=|. +++. -|+.-+. +.|..-.+
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~----------VG~~~~~---------------v~V~~~d~ 137 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDK----------VGTKIGD---------------VPVYDLDD 137 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHH----------hCcccCC---------------eeeechHH
Confidence 699999999999988776554 457999999874 4431 2333322 22322122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
.+++ -.+.++|+++-|.+.-...+-+..-+++|.|-++--+|.
T Consensus 138 le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 138 LEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 1111 123489999999998888888888899999986666774
No 95
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.39 E-value=0.61 Score=45.90 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=56.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECC-EEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inG-k~I~V~~~~dP 169 (334)
+|.|.|.|.||.+.+.++.-.+--+|+++ |. +++-+.+.-++.- ....++. +.... ...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g--------------~~~~~~~~~~~~~---~~~ 230 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG--------------ADVVVNPSEDDAG---AEI 230 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC--------------CeEeecCccccHH---HHH
Confidence 79999999999998777776654566666 53 4444444333211 0111211 11000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
.++.. ..|+|+||||+|...+.+.+-..++.|-.-+++.-+.
T Consensus 231 ~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 231 LELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 01111 1489999999996655566666666555445554443
No 96
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.32 E-value=0.83 Score=47.25 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=57.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC--------CCHHHHhhhhccccc-cccCCCeEEEeCCCeEEECCE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDST-HGVFKGTINVVDDSTLEINGK 159 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~--------~d~~~~ayLlkYDSt-hGkf~~~v~~e~~~~L~inGk 159 (334)
-.||+|-|||.+|...++.|.+.+ ..||+|.|.. .|++.+.|+.+|... +++... +.+. . |
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~G-AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~---~~~~----~-g- 297 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELG-GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIRE---YAEK----Y-G- 297 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhh---hHhh----c-C-
Confidence 359999999999999999999875 8999999821 255555555443221 111110 0000 0 1
Q ss_pred EEEEEeccCCCCCCCCccCccEEEec-cCCCCCHHHHHHHHHcCC
Q 019933 160 LIKVFSKRDPAEIPWGDYGVDYVVES-SGVFTTIAKASAHMKGGA 203 (334)
Q Consensus 160 ~I~V~~~~dP~~i~W~~~gvDiVvEs-TG~f~t~e~a~~hl~aGa 203 (334)
.... +++ =.|. ..+|+.+=| ++.-.+.+.+..-...|+
T Consensus 298 -a~~i---~~d-~~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~ 336 (444)
T PRK14031 298 -CKYV---EGA-RPWG-EKGDIALPSATQNELNGDDARQLVANGV 336 (444)
T ss_pred -CEEc---CCc-cccc-CCCcEEeecccccccCHHHHHHHHhcCC
Confidence 1111 111 1342 477888766 455567777776545566
No 97
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.26 E-value=0.25 Score=48.32 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|||+|||.+.+.+...+ ++|++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg-~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALG-MKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEEC
Confidence 58999999999999999987664 7776654
No 98
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.25 E-value=0.85 Score=42.70 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=27.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|||||.| .|++|..+++-+..|+ -|++||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEe
Confidence 4999999 9999999999999986 89999864
No 99
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.23 E-value=0.26 Score=44.57 Aligned_cols=95 Identities=23% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 92 VgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
|.|.| +|.+|+.++++|... .++|.++... ..+..+.-|+. .| -++ ++. ...|++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~--~~~~~~~~l~~---~g---~~v-v~~--------------d~~~~~ 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRD--PSSDRAQQLQA---LG---AEV-VEA--------------DYDDPE 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESS--SHHHHHHHHHH---TT---TEE-EES---------------TT-HH
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEec--cchhhhhhhhc---cc---ceE-eec--------------ccCCHH
Confidence 68999 999999999999994 5999887653 12223332321 11 011 110 111233
Q ss_pred CCCCCccCccEEEeccCCCCC-H-----HHHHHHHHcCCCEEEEeC
Q 019933 171 EIPWGDYGVDYVVESSGVFTT-I-----AKASAHMKGGAKKVVISA 210 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t-~-----e~a~~hl~aGaKkVIISa 210 (334)
.+.=.=.|+|.||.+++.+.. . .-..+..++|+|++|.|.
T Consensus 57 ~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 57 SLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 222111289999999997632 2 223455678999988754
No 100
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.90 E-value=2.5 Score=40.74 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=72.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|.|.|-||...++++...+ .+++++...-.+.+....+-+ +|- +. + +-+.-.+ .+ .
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~----~Ga---~~-v--------~~~~~~~-~~---~ 233 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEE----LGA---TY-V--------NSSKTPV-AE---V 233 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHH----cCC---EE-e--------cCCccch-hh---h
Confidence 7999999999999999888775 577777531012333332221 111 10 1 1000000 00 0
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCe-EE-eecCccccCCCCCEEecCCchhhhHHHHH
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPM-FV-VGVNEKTYKPNMNIVSNASCTTNCLAPLA 248 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~-~V-~GVN~~~y~~~~~IVSnASCTTncLAPvl 248 (334)
. .+ .++|+||||+|.-...+.+-..++.|-+-+++..+..+.+. +- ..++...+..+..|+..-.++..-+..++
T Consensus 234 ~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 310 (355)
T cd08230 234 K-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAV 310 (355)
T ss_pred h-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHH
Confidence 0 11 27899999999655556666677766644444444321111 11 01112223234556666556655566677
Q ss_pred HHHhh
Q 019933 249 KVVHE 253 (334)
Q Consensus 249 KvL~d 253 (334)
+.|.+
T Consensus 311 ~~l~~ 315 (355)
T cd08230 311 EDLAQ 315 (355)
T ss_pred HHHHh
Confidence 77655
No 101
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.85 E-value=0.73 Score=52.25 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=61.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce------------EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEEC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD------------VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN 157 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e------------iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~in 157 (334)
.||+|.|.|+||+.+++.|.+.++++ +|+|.|+ +++....+.+ .+++
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~------------- 628 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIEN------------- 628 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHH------hcCC-------------
Confidence 49999999999999999998877666 7889885 4544433322 0000
Q ss_pred CEEEEEEeccCCCCCC-CCccCccEEEeccCCCCCHHHHHHHHHcCCCE
Q 019933 158 GKLIKVFSKRDPAEIP-WGDYGVDYVVESSGVFTTIAKASAHMKGGAKK 205 (334)
Q Consensus 158 Gk~I~V~~~~dP~~i~-W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKk 205 (334)
-+.+.+ .-.|++++. +- .++|+|+-|++.+...+-+...+++|..-
T Consensus 629 ~~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkHv 675 (1042)
T PLN02819 629 AEAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKHL 675 (1042)
T ss_pred CceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCCE
Confidence 011111 012222221 10 26899999999999999999999999743
No 102
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.71 E-value=0.84 Score=46.50 Aligned_cols=99 Identities=21% Similarity=0.246 Sum_probs=62.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+||-|.|.|+||+.+++.|..+.+.+|. |-| .+.+..+-... ++.+ .++ .+.++- .|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAd--Rs~~~~~~i~~--~~~~----~v~-----~~~vD~--------~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IAD--RSKEKCARIAE--LIGG----KVE-----ALQVDA--------ADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEe--CCHHHHHHHHh--hccc----cce-----eEEecc--------cCh
Confidence 5999999999999999999888776754 444 35555544432 2222 111 222221 111
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
+.+.=--.+.|+||.|.+.|.+..-.++-++.|..-|-+|.
T Consensus 60 ~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 60 DALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred HHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEccc
Confidence 10000001449999999999999999999999997655543
No 103
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.46 E-value=1.7 Score=41.74 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=75.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhc-----cc--cccccCCCeEEEeCCCeEEECCEEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK-----YD--STHGVFKGTINVVDDSTLEINGKLIKV 163 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlk-----YD--SthGkf~~~v~~e~~~~L~inGk~I~V 163 (334)
||||.|.|.+|+.+...+...+ ++++..+- +++.+....+ +| -..|.+.... . +..+ ..|++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~--~~~~----~~l~~ 75 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG-VDVLVFET---TEELATAGRNRIEKSLERAVSRGKLTERE-R--DAAL----ARLRF 75 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEEC---CHHHHHHHHHHHHHHHHHHHhcccCChhh-H--HHHH----hCeEe
Confidence 8999999999999998887764 78665543 4444333111 00 0112221110 0 0000 12333
Q ss_pred EeccCCCCCCCCccCccEEEeccCCCCCHHHHH-HHHHcCC---CEEEEeCCCC----------CCCeEEee---cCccc
Q 019933 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKAS-AHMKGGA---KKVVISAPSA----------DAPMFVVG---VNEKT 226 (334)
Q Consensus 164 ~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~-~hl~aGa---KkVIISaPs~----------D~p~~V~G---VN~~~ 226 (334)
. .|.+.+ .++|+||||...-...+..- ..++.-+ ..+|.|+.|. ..|--+.| .|+-.
T Consensus 76 ~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~ 149 (286)
T PRK07819 76 T--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVP 149 (286)
T ss_pred e--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence 2 233332 38999999976544433221 1222222 2377777652 12322222 23222
Q ss_pred cCCCCCEEecCCchhhhHHHHHHHHhhhcCe
Q 019933 227 YKPNMNIVSNASCTTNCLAPLAKVVHEEFGI 257 (334)
Q Consensus 227 y~~~~~IVSnASCTTncLAPvlKvL~d~fGI 257 (334)
+.+--.||....+.-..++-+...+.+.+|-
T Consensus 150 ~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 150 VLPLVELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 2222357777777777777766666655553
No 104
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.42 E-value=1.3 Score=42.18 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=66.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|+|.|.||...++++...+ ...|.+-|. +.+.+....+| ..+|- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~--~~~rl~~a~~~------------------~~i~~--------~~~- 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET--NPRRRDGATGY------------------EVLDP--------EKD- 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC--CHHHHHhhhhc------------------cccCh--------hhc-
Confidence 6899999999999999887775 654444342 33322111110 01110 000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCc-cccCCCCCEEecCCchhhhHHHHHH
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNE-KTYKPNMNIVSNASCTTNCLAPLAK 249 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~-~~y~~~~~IVSnASCTTncLAPvlK 249 (334)
...++|+||||+|.-.+.+.+-..++.|.+-+++..+.. ++ .+|- ..+..+..++.....+..-+.-+++
T Consensus 197 ----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 267 (308)
T TIGR01202 197 ----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE--PV---NFDFVPAFMKEARLRIAAEWQPGDLHAVRE 267 (308)
T ss_pred ----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC--Cc---ccccchhhhcceEEEEecccchhHHHHHHH
Confidence 123789999999976555666666776664444433321 10 1111 1122234555554444455666666
Q ss_pred HHhh
Q 019933 250 VVHE 253 (334)
Q Consensus 250 vL~d 253 (334)
.+.+
T Consensus 268 l~~~ 271 (308)
T TIGR01202 268 LIES 271 (308)
T ss_pred HHHc
Confidence 6654
No 105
>PLN02928 oxidoreductase family protein
Probab=90.38 E-value=0.33 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=27.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+||+.+.+.+...+ ++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG-VKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 48999999999999999998775 88888764
No 106
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=90.20 E-value=2.3 Score=41.57 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=29.1
Q ss_pred ceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||..| -|--|+.++|++..+|.||+..+..
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvss 52 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSS 52 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeeh
Confidence 47999999 9999999999999999999766653
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.16 E-value=0.36 Score=47.72 Aligned_cols=31 Identities=35% Similarity=0.547 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+||+.|.+.+...+ |+|.+.+-
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d~ 173 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYDP 173 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEECC
Confidence 48999999999999999988775 88877653
No 108
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=90.12 E-value=0.98 Score=41.96 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.0
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|.| +|.||+.+++.|.+++ .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeC
Confidence 578999 9999999999998874 78777654
No 109
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.11 E-value=0.95 Score=43.40 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCC-ceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDD-VDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d-~eiVAIN 120 (334)
.||+|.|+|.||+.+.+.+...+. .+|.+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 589999999999999999887642 2555443
No 110
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.80 E-value=0.4 Score=46.81 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|+|+||+.+.+.+... +++|++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEECC
Confidence 5899999999999999987655 488888774
No 111
>PRK07574 formate dehydrogenase; Provisional
Probab=89.70 E-value=0.4 Score=48.53 Aligned_cols=31 Identities=42% Similarity=0.471 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+||+.++|.+...+ ++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 48999999999999999998764 88777764
No 112
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.68 E-value=0.39 Score=38.64 Aligned_cols=91 Identities=29% Similarity=0.325 Sum_probs=57.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEE-eccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF-SKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~-~~~d 168 (334)
.||.|.|.|+.|+.++...+....++++++=|. +++ +.. -.++| +.++ ..++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~-------------~~G----------~~i~g--ipV~~~~~~ 56 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPE-------------KIG----------KEIGG--IPVYGSMDE 56 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTT-------------TTT----------SEETT--EEEESSHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCC-------------ccC----------cEECC--EEeeccHHH
Confidence 589999999999987755555446888887662 221 111 12333 4454 2222
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
..+.- ++|+.+-|.+.....+.+...+++|.|.++.-+|
T Consensus 57 l~~~~----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 57 LEEFI----EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHC----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred hhhhh----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 21111 3899999998777778888888999998876554
No 113
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.60 E-value=0.42 Score=47.05 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|+|+||+.+.+.+...+ ++|.+.+-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG-MRILYYSR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEECC
Confidence 58999999999999999998764 88877653
No 114
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.54 E-value=0.43 Score=46.92 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHH-cCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~-~~~d~eiVAI 119 (334)
.+|||.|||+|||.+.|.+. .. +++|++.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~ 175 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYN 175 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEEE
Confidence 58999999999999999886 55 3776644
No 115
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.53 E-value=0.53 Score=41.13 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=28.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLl 133 (334)
+|||++|+|++|+.+.+.|...+ ++|.+-|- +++...-+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d~---~~~~~~~~~ 41 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG-YEVTVYDR---SPEKAEALA 41 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT-TEEEEEES---SHHHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcC-CeEEeecc---chhhhhhhH
Confidence 59999999999999999998875 88776652 444443433
No 116
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.52 E-value=0.42 Score=48.46 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|||+||+.+.+.+...+ ++|++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 48999999999999999998764 8887765
No 117
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.30 E-value=0.45 Score=44.86 Aligned_cols=159 Identities=20% Similarity=0.193 Sum_probs=74.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhh-hhccccccccCCCeEEEeCCCeEEECC-EEEEEEe
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAY-MFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFS 165 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ay-LlkYDSthGkf~~~v~~e~~~~L~inG-k~I~V~~ 165 (334)
..||.|.|.|-+|..+++.|...+ + ++.-|.+-..++..+-. ++...++-|+..-++..+ .-..+|- -.|..+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~--~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAE--RIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHH--HHHHHCCCcEEEEee
Confidence 358999999999999999998664 3 22223211223333322 222234556533221110 0011221 1122221
Q ss_pred cc-CCCCCC-CCccCccEEEeccCCCCCHHHHHHHH-HcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhh
Q 019933 166 KR-DPAEIP-WGDYGVDYVVESSGVFTTIAKASAHM-KGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTN 242 (334)
Q Consensus 166 ~~-dP~~i~-W~~~gvDiVvEsTG~f~t~e~a~~hl-~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTn 242 (334)
+. ++++++ +-..+.||||+|+..+..+...-.+. +.+ .|+|..+-...++|+..--|..-+.|.+
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~------------ip~I~s~g~g~~~dp~~i~i~di~~t~~ 155 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK------------IPVISSMGAGGKLDPTRIRVADISKTSG 155 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC------------CCEEEEeCCcCCCCCCeEEEccEecccc
Confidence 11 111111 11235899999998776553333222 222 2333333334455554334555566666
Q ss_pred hHHHHHHHHh---hhcCeeEEEEEEE
Q 019933 243 CLAPLAKVVH---EEFGILEGLMTTV 265 (334)
Q Consensus 243 cLAPvlKvL~---d~fGI~~g~mTTV 265 (334)
| |+++.+. ++-||..+ +..|
T Consensus 156 ~--pla~~~R~~Lrk~~~~~~-~~~v 178 (231)
T cd00755 156 D--PLARKVRKRLRKRGIFFG-VPVV 178 (231)
T ss_pred C--cHHHHHHHHHHHcCCCCC-eEEE
Confidence 5 6665554 44455432 3444
No 118
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.23 E-value=0.33 Score=41.85 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=27.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||+|+|.||+|..+.++|.+.+ ++|++|-.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~s 41 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAG-HEVVGVYS 41 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTT-SEEEEESS
T ss_pred cEEEEECCCHHHHHHHHHHHHCC-CeEEEEEe
Confidence 59999999999999999998875 89988854
No 119
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.09 E-value=1.2 Score=37.30 Aligned_cols=83 Identities=24% Similarity=0.222 Sum_probs=53.1
Q ss_pred eEEEEc----CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 91 KVGING----FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 91 kVgING----fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
+|+|.| -++.|+.+++.+.+++ ++|..||-- |+. +.|.+ ++.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~------------~~~------------------i~G~~--~y~- 47 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK------------GGE------------------ILGIK--CYP- 47 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT------------CSE------------------ETTEE---BS-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC------------ceE------------------ECcEE--eec-
Confidence 689999 6999999999999864 899999862 122 22321 211
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
+.+++| ..+|+++-++..-...+..+.-.+.|+|.|++...
T Consensus 48 -sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 48 -SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 111111 27899999999877777777777789999888544
No 120
>PLN02712 arogenate dehydrogenase
Probab=89.06 E-value=0.81 Score=49.41 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=26.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||||+|+|+||+.+.+.+.+.+ ++|++++.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr 83 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQG-HTVLAHSR 83 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 49999999999999999998775 78888765
No 121
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=88.94 E-value=1.1 Score=44.68 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=58.1
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
++||||.|. ++|+..++++.+.+ ++++|||-|. +.+...-+-+ .||. + .+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A~---~~gi-~-------------------~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALAH---RLGV-P-------------------LY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHHH---HhCC-C-------------------cc--C
Confidence 369999999 68999999998876 7999999995 5543322221 1110 0 00 1
Q ss_pred CCCCCCCCccCccEEEe--ccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 168 DPAEIPWGDYGVDYVVE--SSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvE--sTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
|.+++. .+.++|.|.= ++......+.+...+++| |-|++--|-
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~EKPl 99 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQEHPL 99 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEEcCCC
Confidence 122221 1224555554 234566788888899998 467776664
No 122
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.94 E-value=0.53 Score=44.59 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.2
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|++||+|.|+|.+|+.+.+.+...+ +++.+.|
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g-~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG-YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC-CeEEEEc
Confidence 4569999999999999999888764 7776654
No 123
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=88.77 E-value=0.98 Score=35.34 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=31.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCC--CceEEEEeCCCCCHHHHhhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~--d~eiVAIND~~~d~~~~ayLl 133 (334)
||||.|+|++|..+++.+.+.+ .-+|.-+++ .+++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~--r~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS--RSPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE--SSHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc--CcHHHHHHHH
Confidence 7999999999999999998874 256554645 3677666664
No 124
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.49 E-value=0.59 Score=45.76 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||.||+.+.+.+...+ ++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998764 88777653
No 125
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.42 E-value=0.57 Score=46.37 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|+||||+.+.|.+... +++|..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 4899999999999999999854 37765554
No 126
>PLN02712 arogenate dehydrogenase
Probab=88.33 E-value=0.76 Score=49.63 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=45.9
Q ss_pred ceeeccCCCCCCCCccccccccccCCcccccccCCccccCCCCCCceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 44 SIFGTSVPSGSSSSSLQTCAAKGIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-.+|..+. ++.+.-+....-||.........- ....+++||||+|+|+||+.+.+.+.+.+ .+|++++.
T Consensus 332 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~dr 400 (667)
T PLN02712 332 HTYGAAFL----SSLDMMRFQGVAQKYEYNAQVSGC----VNDGSKLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYSR 400 (667)
T ss_pred ccchHHhh----hhhhhhhhhcccCCCCccchhhhc----cCCCCCCEEEEEecCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 44555532 555666666777887765422111 11123469999999999999999998764 78888775
No 127
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.28 E-value=1.1 Score=43.55 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-||.|.|+|++|+.+++.|...+ .+|..++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r 183 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGAR 183 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 59999999999999999998775 67666654
No 128
>PLN02256 arogenate dehydrogenase
Probab=87.98 E-value=0.7 Score=45.08 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=27.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.++||+|.|+|.||..+.+.+.+.+ .+|++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~ 67 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSR 67 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 3569999999999999999998764 78887775
No 129
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=87.78 E-value=1.5 Score=45.00 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=34.5
Q ss_pred ccccCCcccccccCCccccCCCCCCceeEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 64 AKGIQPIRATATEIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~M~ikVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
..++.|...+-.+.........+.-+..|-|.| +|++||++.+.|.+++ |.+-+.
T Consensus 54 ~~~~~~~~~~~~e~~v~~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~ 109 (411)
T KOG1203|consen 54 KTPISPVTGTTSEAEVSPPNNNSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRAL 109 (411)
T ss_pred cCCCCccccccceeeeccCCCCCCCCCeEEEecCCCchhHHHHHHHHHCC-Ceeeee
Confidence 445555555544442221111111135899999 9999999999999997 765554
No 130
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.77 E-value=2.3 Score=45.42 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=33.5
Q ss_pred CCcccccccCCccccCCCCCCceeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 68 QPIRATATEIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+.+++.......+....+.+.-.|.|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~ 111 (576)
T PLN03209 59 GATKFSSAAIEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGV 111 (576)
T ss_pred cchhhhhhhhhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 44444444433333333323334688999 9999999999998875 7777664
No 131
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.76 E-value=0.7 Score=45.55 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|+|+||+.+.+.+...+ ++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence 48999999999999999998764 7877765
No 132
>PLN02306 hydroxypyruvate reductase
Probab=87.72 E-value=0.67 Score=46.87 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHH-cCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~-~~~d~eiVAIN 120 (334)
.+|||.|||+||+.+.|.+. .. +++|.+.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d 196 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD 196 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEEC
Confidence 58999999999999999874 44 47877664
No 133
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.65 E-value=2.7 Score=41.15 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||+|.|-|.||..+...+..++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC
Confidence 49999999999999988877664
No 134
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.30 E-value=0.72 Score=46.66 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||+|+|+||+.+.+.+...+ +++.+.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG-IKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998764 8877654
No 135
>PLN03139 formate dehydrogenase; Provisional
Probab=87.03 E-value=0.7 Score=46.84 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|+|+||+.+++.+... +++|.+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~d 229 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYHD 229 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEC
Confidence 4899999999999999999865 47876654
No 136
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.38 E-value=4 Score=39.16 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=52.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.||...++++...+ . .|+++.. +.+.+..+.+ +|- + ..++-+.-.+ .+ .
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~----lGa---~--------~vi~~~~~~~-~~--~ 229 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLARE----MGA---D--------KLVNPQNDDL-DH--Y 229 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHH----cCC---c--------EEecCCcccH-HH--H
Confidence 7999999999999999888775 5 4555432 3344433332 221 0 1111110001 00 0
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.+ .. .++|+||||+|.-.+.+.+-..++.|-+-|++
T Consensus 230 ~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 230 KA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred hc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00 01 15899999999755556666778777644444
No 137
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.20 E-value=3.2 Score=38.74 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=71.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.||.+.++.+...+ .. |+++ +. +.+.+..+-+ +|- + ..++.+.. . ...
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~-~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~---~-~~~ 179 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG-AARVVAA-DP--SPDRRELALS----FGA---T--------ALAEPEVL---A-ERQ 179 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE-CC--CHHHHHHHHH----cCC---c--------EecCchhh---H-HHH
Confidence 7899999999999999887775 65 6666 42 3333333222 121 0 11111100 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccc-cCCCCCEEecCCchhhhHHHHH
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKT-YKPNMNIVSNASCTTNCLAPLA 248 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~-y~~~~~IVSnASCTTncLAPvl 248 (334)
.++. ...++|+||||+|.-...+.+-..++.|.+-+++.......+ ..++... +..+..|+..-..+...+.-++
T Consensus 180 ~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~ 255 (280)
T TIGR03366 180 GGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQAV 255 (280)
T ss_pred HHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHHH
Confidence 0011 123799999999976666667777777665444543321111 1222222 2234456655444445566777
Q ss_pred HHHhh
Q 019933 249 KVVHE 253 (334)
Q Consensus 249 KvL~d 253 (334)
+.|.+
T Consensus 256 ~~l~~ 260 (280)
T TIGR03366 256 RFLAA 260 (280)
T ss_pred HHHHh
Confidence 77765
No 138
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.09 E-value=0.67 Score=43.17 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.7
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
|++||+|.|+|.||..+.+.+.+.+
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCC
Confidence 4579999999999999999887653
No 139
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.03 E-value=1.3 Score=42.31 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=55.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC----------CceEEEEeCC-CCCHHHHhhhhccccccccCCCeEEEeCCCeEEEC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD----------DVDVVAVNDP-FIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN 157 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~----------d~eiVAIND~-~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~in 157 (334)
..||.|.|.|-+|-.+++.|...+ .++|+-| |. .++...+-..+-++..-|+...++-.+ .--.++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lv-D~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~--ri~~~~ 87 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVY-DDDTVSEANVGRQAFYPADVGQNKAIVLVN--RLNQAM 87 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEE-CCCEEccchhhcccCChhHCCcHHHHHHHH--HHHhcc
Confidence 469999999999999999887531 2344333 32 233333322222345556654433221 111123
Q ss_pred CEEEEEEecc-CCCCCCCCccCccEEEeccCCCCCHHHHH
Q 019933 158 GKLIKVFSKR-DPAEIPWGDYGVDYVVESSGVFTTIAKAS 196 (334)
Q Consensus 158 Gk~I~V~~~~-dP~~i~W~~~gvDiVvEsTG~f~t~e~a~ 196 (334)
+-.++.+.++ +++++ . .+.|+||+|+..+.++...-
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~ 124 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAIL 124 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHH
Confidence 4344443322 22222 2 26899999999988876553
No 140
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=86.02 E-value=0.96 Score=44.80 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.6
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|.++|-|.|||.+|+..+|.+..++.+++|+.=+
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv 34 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWV 34 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEe
Confidence 6679999999999999999999998999998754
No 141
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=85.56 E-value=1.8 Score=37.70 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=57.8
Q ss_pred EEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCC-------eEEECCEEE
Q 019933 92 VGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS-------TLEINGKLI 161 (334)
Q Consensus 92 VgING-fGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~-------~L~inGk~I 161 (334)
|.|.| +|-||+..++.+.+.+ +|+|+++.- ..+.+.+..+.+ |.. .-+.+.++. .+.-.+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~p------~~v~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQAREFKP------KYVVIADEEAYEELKKALPSKGPGI 73 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHHHHHT-------SEEEESSHHHHHHHHHHHHHTTSSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHHhhhcCCCC
Confidence 68999 9999999999998875 699999876 456666555543 211 112221100 000011123
Q ss_pred EEEeccC-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 162 KVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 162 ~V~~~~d-P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
+++...+ ..++- .+.++|+|+-+.-.|...+-.-..++.| |++-+
T Consensus 74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaL 119 (129)
T PF02670_consen 74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIAL 119 (129)
T ss_dssp EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE
T ss_pred EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEE
Confidence 3332221 00000 1136778887777777777666677776 45444
No 142
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.11 E-value=4.8 Score=38.53 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=23.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
+||+|.|.|.+|..++..+...+-.+|+-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 599999999999999988877641255444
No 143
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.35 E-value=1.2 Score=46.61 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=26.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+||+.+.+.+...+ ++|++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 48999999999999999998764 88887753
No 144
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.24 E-value=1.9 Score=42.41 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
.||+|.|-|.+|..+...+..++-.+ +.+-|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 48999999999999988877664235 444453
No 145
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=84.14 E-value=1.3 Score=44.33 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
.+|||+|+|+||+.+.+.|...+ ++|++.|++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence 48999999999999999998875 898777764
No 146
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.07 E-value=1.3 Score=44.84 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||+|+|.||+.+.+.+...+ +++++.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998764 8876653
No 147
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.07 E-value=1.7 Score=39.86 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=26.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC--Cce-EEEEeC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD--DVD-VVAVND 121 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~--d~e-iVAIND 121 (334)
.+||+|.|.|++|+.+++.+..++ +++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 469999999999999999887653 354 666665
No 148
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.89 E-value=1.4 Score=43.29 Aligned_cols=31 Identities=42% Similarity=0.475 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|+|+||+.+.+.+...-+++|.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 4899999999999999988432246776654
No 149
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.73 E-value=1.3 Score=46.34 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=26.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||.|||+||+.+.+.+...+ ++|++.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~ 171 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG-MKVIAYDP 171 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 48999999999999999998764 88888764
No 150
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.03 E-value=4.2 Score=38.60 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-+|.|+|.|.||..+++.+...+ .. ++++.. +.+...++.+ +|- + ..++.+.-.. ..
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~---~~~~~~~~~~----~ga---~--------~~i~~~~~~~---~~ 222 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG-AEDVIGVDP---SPERLELAKA----LGA---D--------FVINSGQDDV---QE 222 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHHHHHHH----hCC---C--------EEEcCCcchH---HH
Confidence 38999999999999999887765 66 776643 3333333322 221 0 1111110000 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhhhHHHHH
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 248 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPvl 248 (334)
..++. ...++|+||||+|.-...+.+-..++.+.+-+++..+. + +.+-+ ....+..+..|+..-.++..-+.-++
T Consensus 223 ~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~~~ 297 (339)
T cd08239 223 IRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG-E-LTIEV--SNDLIRKQRTLIGSWYFSVPDMEECA 297 (339)
T ss_pred HHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC-C-cccCc--HHHHHhCCCEEEEEecCCHHHHHHHH
Confidence 00000 11279999999997665566667787776544454332 1 11111 01122223445544444445566666
Q ss_pred HHHhh
Q 019933 249 KVVHE 253 (334)
Q Consensus 249 KvL~d 253 (334)
+.+.+
T Consensus 298 ~~~~~ 302 (339)
T cd08239 298 EFLAR 302 (339)
T ss_pred HHHHc
Confidence 66654
No 151
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.88 E-value=21 Score=33.40 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=69.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|+|.|.+|+.+++.+...+ ++++++.+. .+...++-+ +|- + ..++.+. .+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~---~~~~~~~~~----~g~---~--------~~~~~~~-------~~- 222 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRS---GEHQELARE----LGA---D--------WAGDSDD-------LP- 222 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCC---hHHHHHHHH----hCC---c--------EEeccCc-------cC-
Confidence 7889999999999999887765 788777553 222222211 120 0 0111100 01
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhhhHHHHHHH
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKV 250 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPvlKv 250 (334)
+.++|++++++|.....+.+..+++.+.+-+++... .. -+.+++...+.....+.....-....+..+++.
T Consensus 223 -----~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~-~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 293 (329)
T cd08298 223 -----PEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIH-MS---DIPAFDYELLWGEKTIRSVANLTRQDGEEFLKL 293 (329)
T ss_pred -----CCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCC-CC---CCCccchhhhhCceEEEEecCCCHHHHHHHHHH
Confidence 236899999988777778888899877644433211 11 112333222222334444444445556666655
Q ss_pred Hhh
Q 019933 251 VHE 253 (334)
Q Consensus 251 L~d 253 (334)
+.+
T Consensus 294 ~~~ 296 (329)
T cd08298 294 AAE 296 (329)
T ss_pred HHc
Confidence 543
No 152
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.33 E-value=1.3 Score=42.86 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
..+|.|.|.|-+|-.+++.|...+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998764
No 153
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.10 E-value=10 Score=35.39 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=53.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
-+|.|+|.|.+|+.+++.+...+ .+++++.. +.+...++.+|..+ . .++-+ +.
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~---~~~~~~~~~~~g~~-------~--------~~~~~--------~~ 209 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG-PDVVLVGR---HSEKLALARRLGVE-------T--------VLPDE--------AE 209 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHcCCc-------E--------EeCcc--------cc
Confidence 37899999999999999998875 77666643 34444444432210 0 01100 00
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkV 206 (334)
.++ .++|+++||+|.-...+.+..+++.+.+-+
T Consensus 210 --~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 210 --SEG--GGFDVVVEATGSPSGLELALRLVRPRGTVV 242 (319)
T ss_pred --ccC--CCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 122 379999999987555666777787766443
No 154
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.61 E-value=1.3 Score=37.59 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~ 112 (334)
||.|.|.|.+|..+++.|...+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G 22 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG 22 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999998765
No 155
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.95 E-value=2.1 Score=43.15 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=32.6
Q ss_pred CCceeEEEEcCChhHHHHHHHHHcCC--CceEEEEeCC
Q 019933 87 DGNTKVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDP 122 (334)
Q Consensus 87 ~M~ikVgINGfGrIGR~vlRal~~~~--d~eiVAIND~ 122 (334)
.+.+|+||.|.|+|+|-+++++..-+ +..||||-|+
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~ 41 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP 41 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc
Confidence 45699999999999999999998766 7999999997
No 156
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=80.83 E-value=6.4 Score=39.39 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=51.2
Q ss_pred ceeEEEEc-CChhHHHHHHHHHcCCCceEEE-EeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec
Q 019933 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVA-VNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (334)
Q Consensus 89 ~ikVgING-fGrIGR~vlRal~~~~d~eiVA-IND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~ 166 (334)
..+|-|-| .|-||.-+++.|++|+ ..|.| |-|+ -+.+...||.+.+. ++++++++..
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~-~~~k~~~~L~~l~~-------------------a~~~l~l~~a 64 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDP-EDEKKTEHLRKLEG-------------------AKERLKLFKA 64 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCc-chhhhHHHHHhccc-------------------CcccceEEec
Confidence 45999999 9999999999999997 56555 4554 56666667776442 1111222221
Q ss_pred --cCCCCCCCCccCccEEEeccCCC
Q 019933 167 --RDPAEIPWGDYGVDYVVESSGVF 189 (334)
Q Consensus 167 --~dP~~i~W~~~gvDiVvEsTG~f 189 (334)
.|+..++=.-.|+|+||.+.-.+
T Consensus 65 DL~d~~sf~~ai~gcdgVfH~Asp~ 89 (327)
T KOG1502|consen 65 DLLDEGSFDKAIDGCDGVFHTASPV 89 (327)
T ss_pred cccccchHHHHHhCCCEEEEeCccC
Confidence 24444443445788888775543
No 157
>PLN02602 lactate dehydrogenase
Probab=80.51 E-value=4 Score=40.86 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||+|.|.|.||..++-.+..++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~ 60 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD 60 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 59999999999999988887765
No 158
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=80.37 E-value=3.4 Score=39.91 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIN 120 (334)
||+|.|.|.+|+.++..|..++-. +|+-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999999887533 455444
No 159
>PLN02572 UDP-sulfoquinovose synthase
Probab=80.09 E-value=3.9 Score=41.64 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=31.4
Q ss_pred CccccCCCCCCceeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 78 PPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 78 ~~~~~~~~~~M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|..++.+...+..||-|-| .|.||+.++|.|.+++ .+|+++.
T Consensus 36 ~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 36 PSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 4444444444446899999 9999999999999875 7887764
No 160
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=79.99 E-value=1.4 Score=39.70 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHhhh-cCeeEEEEEEEeecCCCCCC------------ccCCCCCCCCcccccccccccCCcc
Q 019933 248 AKVVHEE-FGILEGLMTTVHATTATQKT------------VDGPSMKDWRGGRGASQNIIPSSTG 299 (334)
Q Consensus 248 lKvL~d~-fGI~~g~mTTVHA~T~~Q~~------------~D~~~~kd~R~~RaA~~NIIPtsTG 299 (334)
|++|+++ ++++++.++|++++|+.=+- +-+...+.---....+.|++|+.-+
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~ 65 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGG 65 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSST
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCC
Confidence 5788998 99999999999999998431 0000001112234567899988765
No 161
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=79.63 E-value=13 Score=35.90 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=21.7
Q ss_pred eEEEEcCChhHHHHHHHHHc-CCCceEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAF-RDDVDVVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~-~~d~eiVAI 119 (334)
+|.|.|.|.||..+++.+.. .....++++
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~ 195 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVF 195 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 79999999999988887754 333456555
No 162
>PLN02688 pyrroline-5-carboxylate reductase
Probab=79.48 E-value=4.1 Score=37.91 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCC---ceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d---~eiVAIND 121 (334)
+||+++|+|.+|..+++.|.+.+. .+|+..++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~ 35 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADD 35 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC
Confidence 389999999999999999987641 26776745
No 163
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.00 E-value=2.6 Score=40.75 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-+|+|.|+|+||+.+++.|...+ .+|...|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998876 67776664
No 164
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.00 E-value=3 Score=35.85 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.3
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 92 VgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|.|.| +|.+|+.+++.|.+++ .+|.++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence 67999 9999999999999987 99988875
No 165
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=78.74 E-value=2.5 Score=43.16 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=61.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCC---eEE--EC--CE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--IN--GK 159 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~---~L~--in--Gk 159 (334)
.||.|.| +|.||...++.+...+ +|+|+++.- ..+.+.+..+.+ |.. .-+.+.++. .+. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa-~~n~~~L~~q~~~f~p------~~v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSA-GKNVALMVEQILEFRP------KFVAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHcCC------CEEEEcCHHHHHHHHHHhhcCCC
Confidence 4899999 9999999999987654 599999865 345554444432 111 122221110 010 01 22
Q ss_pred EEEEEeccCC-CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 160 LIKVFSKRDP-AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 160 ~I~V~~~~dP-~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.++++...+- .++- ....+|+|+-+.-.|....-.-..+++| |++-+
T Consensus 75 ~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaL 122 (389)
T TIGR00243 75 RTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIAL 122 (389)
T ss_pred CcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEE
Confidence 2444443321 1110 1125799998877777666666667776 44444
No 166
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.55 E-value=2.8 Score=40.24 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||||.|+|++|+.+.+.|.+.+ ++|+..|.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g-~~v~v~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG-HEVVGYDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC-CeEEEEEC
Confidence 8999999999999999998774 77766653
No 167
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=78.44 E-value=16 Score=37.82 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=29.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF 123 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~ 123 (334)
.||+|-|||.+|+.+.+.+.+. .-+||++.|..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~ 240 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSK 240 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 5999999999999999999776 48999998863
No 168
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=78.36 E-value=6.2 Score=34.06 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=44.5
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+||+|.|. |.||..++-.|..++-. ||+=+.. +.+ .+.=...|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~---~~~-~~~g~a~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI---NED-KAEGEALDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES---SHH-HHHHHHHHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc---Ccc-cceeeehhhhhhhhhc-------------cccccccc-c
Confidence 49999998 99999999888877533 3333322 111 1111122333332221 11233333 4
Q ss_pred CCCCCCCCccCccEEEeccCCCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFT 190 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~ 190 (334)
+.+++. ++|+||-+.|.-.
T Consensus 63 ~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SGGGGT----TESEEEETTSTSS
T ss_pred cccccc----cccEEEEeccccc
Confidence 455553 8999999998753
No 169
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.29 E-value=9.9 Score=39.21 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=48.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
-||.|.|+|++|+.+++.|..++ .+++ +.|. ..+....+.+ +| + .+ +.+ ...+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~-~~D~--~~~~~~~l~~----~g-----~------~~-~~~-------~~~~ 65 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPT-VCDD--DPDALRPHAE----RG-----V------AT-VST-------SDAV 65 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEE-EEcC--CHHHHHHHHh----CC-----C------EE-EcC-------cchH
Confidence 38999999999999999888775 5644 4663 2322222211 11 0 01 111 1112
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGa 203 (334)
+.+. +.|+||.|.|.-.+........+.|+
T Consensus 66 ~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 66 QQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2221 56999999998777655554445554
No 170
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.26 E-value=11 Score=36.73 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=54.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.||..+++++.... . +|+++.. +.+...++-+ +|- . ..++.+.-.. . +..
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~---~~~r~~~a~~----~Ga-~----------~~i~~~~~~~-~-~~i 252 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG-ASQVVAVDL---NEDKLALARE----LGA-T----------ATVNAGDPNA-V-EQV 252 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC---CHHHHHHHHH----cCC-c----------eEeCCCchhH-H-HHH
Confidence 7999999999999999888775 5 4655532 3444443332 221 0 1111110000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
.++. ..++|+||||+|.-.+.+.+-..++.|-+-|++..+
T Consensus 253 ~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 253 RELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred HHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 0111 127899999999765666666777776654445443
No 171
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.25 E-value=20 Score=36.46 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||.|.|.|.+|..+++.|.+++ .+|+.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999998875 7766554
No 172
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.18 E-value=3.3 Score=44.25 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=30.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
-+|-|.||||+|+.+.|.|.+++ +++++|. .|++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID---~d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLD---HDPDHIETL 439 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEE---CCHHHHHHH
Confidence 38999999999999999998874 8888884 266655444
No 173
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=77.71 E-value=3.1 Score=40.39 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
|.++|+|.|+|.||+.+.|.+.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3469999999999999999998875
No 174
>PLN00106 malate dehydrogenase
Probab=77.39 E-value=18 Score=35.91 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~ 112 (334)
.||+|.|. |+||..+...|..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999997 999999999888664
No 175
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.87 E-value=3.9 Score=32.85 Aligned_cols=29 Identities=38% Similarity=0.586 Sum_probs=23.4
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 92 VgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|-|.|+|++|+.+++.|.++ ..+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 46899999999999999984 478887864
No 176
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.64 E-value=3.4 Score=39.64 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||||+|+|++|..+.+.+.+.+ ++|+..|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEEC
Confidence 8999999999999999998764 78776653
No 177
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.58 E-value=3.5 Score=37.30 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=22.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
|||+|.|.|.+|-...-.+.+.+ ++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEE
Confidence 49999999999998888877775 888887
No 178
>PRK08507 prephenate dehydrogenase; Validated
Probab=76.31 E-value=3.7 Score=38.71 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=27.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayL 132 (334)
||+|+|+|.+|..+.+.+.+.+ ..+|++++- +.+.+..+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~---~~~~~~~~ 41 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH---NELHLKKA 41 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC---CHHHHHHH
Confidence 8999999999999999998764 235655542 44444333
No 179
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.78 E-value=8.2 Score=39.15 Aligned_cols=100 Identities=24% Similarity=0.369 Sum_probs=58.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEE-EEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~-V~~~~d 168 (334)
-.|+|.|.|-||-.++..+..-+.=.|+||- + .++.+.+-.++--|| .+|.++.. +.+ -
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD-~--~~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~--~ 246 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVD-I--NPEKLELAKKFGATH---------------FVNPKEVDDVVE--A 246 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEe-C--CHHHHHHHHhcCCce---------------eecchhhhhHHH--H
Confidence 3699999999999998888766656788883 2 444444444432222 23333221 100 0
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
..++ .+.|+|++|||+|....++.+-.....+=+-|+|--|
T Consensus 247 i~~~--T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 247 IVEL--TDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred HHHh--cCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 0111 1239999999999887776665444444444555333
No 180
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=75.72 E-value=4.6 Score=38.42 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|+|.|.+|..+++.+...+ ++|+..+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 37999999999999999988775 7877665
No 181
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=75.68 E-value=3.7 Score=39.47 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
||||+|+|++|..+.+.+.+.+ ++|+..|- +++....+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g-~~V~~~dr---~~~~~~~l 39 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG-HDCVGYDH---DQDAVKAM 39 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC-CEEEEEEC---CHHHHHHH
Confidence 8999999999999999988764 78776653 45444333
No 182
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=75.60 E-value=6.2 Score=40.29 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=61.9
Q ss_pred EEc-CChhHHHHHHHHHcC-CCceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCC---eEE--ECCEEEEEEe
Q 019933 94 ING-FGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGKLIKVFS 165 (334)
Q Consensus 94 ING-fGrIGR~vlRal~~~-~d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~---~L~--inGk~I~V~~ 165 (334)
|.| +|.||+..++.+... ++|+||++.- ..+.+.+..+.+ |.. .-+.+.++. .|. ..+..++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa-~~n~~~L~~q~~~f~p------~~v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTA-NYNIELLEQQIKRFQP------RIVSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEEC-CCCHHHHHHHHHHhCC------CEEEEcCHHHHHHHHHhccCCCcEEEE
Confidence 568 999999999998865 4699999976 345555554443 211 112221110 010 1222244444
Q ss_pred ccC-CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 166 KRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 166 ~~d-P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
..+ ..++- ....+|+|+-+.-.+...+-.-..+++| |++-+.
T Consensus 74 G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLA 116 (383)
T PRK12464 74 GTDGLIAVA-THPGSDLVLSSVVGAAGLLPTIEALKAK-KDIALA 116 (383)
T ss_pred CHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEe
Confidence 332 11110 1126899999988888887777788888 555553
No 183
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=75.55 E-value=3.2 Score=39.34 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
||||.|+|.+|+.+.+.+.+.+ ++|+..|- +++....+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~dr---~~~~~~~~ 38 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVTTI---GPEVADEL 38 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEEcC---CHHHHHHH
Confidence 6999999999999999988775 88776653 44444333
No 184
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.47 E-value=30 Score=33.23 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=71.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEe-ccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS-KRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~-~~d 168 (334)
-+|.|.|.|.||..+++++...+ ..++++.. +.+.+..+.++ |- . ..++-+...... .+.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----Ga-~----------~~i~~~~~~~~~~~~~ 228 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDI---DPEKLEMMKGF----GA-D----------LTLNPKDKSAREVKKL 228 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHh----CC-c----------eEecCccccHHHHHHH
Confidence 37999999999999999888775 67766632 34444444322 21 0 111110000000 000
Q ss_pred CCCCCCCccCc----cEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCc-cccCCCCCEEecCCchhhh
Q 019933 169 PAEIPWGDYGV----DYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNE-KTYKPNMNIVSNASCTTNC 243 (334)
Q Consensus 169 P~~i~W~~~gv----DiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~-~~y~~~~~IVSnASCTTnc 243 (334)
..++ .+..|+ |+||||+|.-...+.+-..++.|-+-+++..+....+ ++. +.+..+..++.+-.|+...
T Consensus 229 ~~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~ 302 (349)
T TIGR03201 229 IKAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTE-----YRLSNLMAFHARALGNWGCPPDR 302 (349)
T ss_pred HHhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcc-----cCHHHHhhcccEEEEEecCCHHH
Confidence 0000 011244 4899999976666666677877764444433332111 111 1122233556555555556
Q ss_pred HHHHHHHHhh
Q 019933 244 LAPLAKVVHE 253 (334)
Q Consensus 244 LAPvlKvL~d 253 (334)
+.-+++.|.+
T Consensus 303 ~~~~~~~i~~ 312 (349)
T TIGR03201 303 YPAALDLVLD 312 (349)
T ss_pred HHHHHHHHHc
Confidence 6667777764
No 185
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=75.39 E-value=7.4 Score=38.85 Aligned_cols=31 Identities=39% Similarity=0.496 Sum_probs=26.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 5899999 9999999999998875 78777653
No 186
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=75.31 E-value=4.6 Score=40.10 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
+||+|.|-|.||..++-+|..+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 39999999999999988886653
No 187
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.31 E-value=5.7 Score=37.04 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=26.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMA 130 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~a 130 (334)
||||+|+|+||+.+++.+...+ ....+.+-+. +.+...
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r--~~~~~~ 40 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR--NAQIAA 40 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC--CHHHHH
Confidence 8999999999999999998764 2222344442 444433
No 188
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=74.62 E-value=4 Score=42.72 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|+|.|+|+|||.+++.+...+ ++|+.++
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999998775 6765553
No 189
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.60 E-value=2.3 Score=42.65 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.3
Q ss_pred CCceeEEEEcCChhHHHHHHHHHcCC
Q 019933 87 DGNTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 87 ~M~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.+--+|||.|+||||+.+++.|...+
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc
Confidence 33458999999999999999887644
No 190
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=74.50 E-value=21 Score=35.03 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDD 113 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d 113 (334)
.||+|.|.|.||..+.-.+..++-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~ 30 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGI 30 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC
Confidence 499999999999999988887753
No 191
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=74.44 E-value=13 Score=36.38 Aligned_cols=93 Identities=12% Similarity=0.233 Sum_probs=50.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|.|.|.||..+++.+.... .+++++... +.+ ...+.+ .+|- .-.++.+.. .+..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~--~~~-~~~~~~---~~Ga-----------~~vi~~~~~-----~~~~ 242 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISSS--SNK-EDEAIN---RLGA-----------DSFLVSTDP-----EKMK 242 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC--cch-hhhHHH---hCCC-----------cEEEcCCCH-----HHHH
Confidence 7899999999999999888775 666665431 111 111110 1121 011111100 0000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
++ . .++|+||||+|.-.+.+.+-..++.|-+-|++.
T Consensus 243 ~~--~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 243 AA--I-GTMDYIIDTVSAVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred hh--c-CCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeC
Confidence 11 1 168999999996445556667777776544453
No 192
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=74.06 E-value=5.3 Score=42.49 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=31.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
.+|-|.||||+|+.+.|.|.+++ +++++|.. |++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEEC---CHHHHHHH
Confidence 48999999999999999998764 88888853 66655444
No 193
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.91 E-value=4.7 Score=38.20 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC---CceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD---DVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~---d~eiVAIN 120 (334)
+||+|+|.|.+|+.+++.+.+++ ..+|+..|
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 49999999999999999998764 24555555
No 194
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=73.90 E-value=4 Score=38.75 Aligned_cols=31 Identities=42% Similarity=0.616 Sum_probs=28.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|+|=|||.+|+.+++.|.+.+ ..+|+|.|
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD 63 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSD 63 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEec
Confidence 59999999999999999999985 89999954
No 195
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.60 E-value=4.8 Score=38.49 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=29.7
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCC---ceEEEEeCCCCCHHHHhhhh
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDD---VDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d---~eiVAIND~~~d~~~~ayLl 133 (334)
|.+||+|+|.|.+|..+++.+.+++- .+|.+.|. +.+....+.
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r---~~~~~~~l~ 46 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL---NVSNLKNAS 46 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC---CHHHHHHHH
Confidence 55699999999999999999987641 24555542 444444443
No 196
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=73.53 E-value=6.8 Score=38.15 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=23.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCc-eEEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDV-DVVAV 119 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~-eiVAI 119 (334)
+||+|.| .|.+|..++..+.+.+-. +|+.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv 32 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI 32 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence 4999999 599999999998887532 45555
No 197
>PRK08818 prephenate dehydrogenase; Provisional
Probab=73.13 E-value=4.9 Score=40.61 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.9
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHcCCCceEEEE
Q 019933 89 NTKVGINGF-GRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 89 ~ikVgINGf-GrIGR~vlRal~~~~d~eiVAI 119 (334)
+.||+|+|+ |.||+.+.+++.++...+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 459999998 9999999999986544666554
No 198
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=73.05 E-value=3.3 Score=41.04 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
..||.|.|.|.+|..+++.|...+ +.-+.|-|
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD 55 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-IGKLTIAD 55 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 358999999999999999998765 54344434
No 199
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=72.86 E-value=4.8 Score=40.27 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=24.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|.| +|.||+.+.+.+...+ ++|..++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 5999999 9999999999998875 6655444
No 200
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=72.77 E-value=31 Score=32.75 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=51.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|.|.|.+|+.+++.+...+ .+++.+.. +.+...++-+ +| . + ..++.+.... ..
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~---~~~~~~~~~~----~g-~--~--------~vi~~~~~~~-----~~ 227 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSR---SPSKKEDALK----LG-A--D--------EFIATKDPEA-----MK 227 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHH----cC-C--c--------EEecCcchhh-----hh
Confidence 7888899999999988887764 67666543 2233333322 12 0 0 1111110000 00
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.+ ..++|+||||+|.-...+.+-.+++.+.+-+.+.
T Consensus 228 ~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 228 KA---AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred hc---cCCceEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence 11 2379999999997655666777777665443343
No 201
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.19 E-value=4.9 Score=40.05 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||.|.|+|++|+.+.+.|.+++ .+++.|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g-~~v~vid~ 31 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN-NDVTVIDT 31 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CcEEEEEC
Confidence 8999999999999999998764 78887753
No 202
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.19 E-value=13 Score=36.04 Aligned_cols=136 Identities=14% Similarity=0.220 Sum_probs=70.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|+|.|.||..+++++...+ ..++++.+ +.+....+++ .+|- +..+ .....-.+ .
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~---~~~~~~~~~~---~~Ga---~~~i-------~~~~~~~~------~ 239 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMG-HHVTVISS---SDKKREEALE---HLGA---DDYL-------VSSDAAEM------Q 239 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CeEEEEeC---CHHHHHHHHH---hcCC---cEEe-------cCCChHHH------H
Confidence 7889999999999999888775 67666644 2222222221 1221 0001 00000001 0
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccc-cCCCCCEEecCCchhhhHHHHHH
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKT-YKPNMNIVSNASCTTNCLAPLAK 249 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~-y~~~~~IVSnASCTTncLAPvlK 249 (334)
+.. .++|+||||+|.-.+.+.+-..++.|.+-|++..+....+ ++... +..+..+...-.++..-+.-+++
T Consensus 240 ~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 311 (357)
T PLN02514 240 EAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQ-----FVTPMLMLGRKVITGSFIGSMKETEEMLE 311 (357)
T ss_pred Hhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCc-----ccHHHHhhCCcEEEEEecCCHHHHHHHHH
Confidence 111 1689999999965566666677777765555544322111 11111 11234555554444445555666
Q ss_pred HHhhhcCee
Q 019933 250 VVHEEFGIL 258 (334)
Q Consensus 250 vL~d~fGI~ 258 (334)
.+.+. .++
T Consensus 312 ~~~~g-~l~ 319 (357)
T PLN02514 312 FCKEK-GLT 319 (357)
T ss_pred HHHhC-CCc
Confidence 55553 343
No 203
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.06 E-value=5.2 Score=40.59 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=29.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~a 130 (334)
+||+|.|.|.+|..+...|.+++ ++|++++- +.+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~---~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDI---NQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeC---CHHHHH
Confidence 59999999999999999998875 88888753 555444
No 204
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.82 E-value=7.9 Score=37.94 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||+|.|.|.||..++-.+..++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~ 26 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKG 26 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 49999999999999888887765
No 205
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=71.71 E-value=6 Score=37.23 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
+||+|.|.|.+|..+++.+.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 48999999999999999998764
No 206
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.31 E-value=5.6 Score=38.30 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||+|.|.|.+|+.+.+.|...+ .+|...|.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~r 35 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG-HRVRVWSR 35 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 38999999999999999998775 67665553
No 207
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=71.29 E-value=6 Score=37.51 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+||+|.|.|.+|..+.+.|.+.+ .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 49999999999999999988764 6655554
No 208
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=71.25 E-value=12 Score=36.14 Aligned_cols=97 Identities=27% Similarity=0.328 Sum_probs=52.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEE--EEEec
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLI--KVFSK 166 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I--~V~~~ 166 (334)
-+|.|.|.|.||..+++.+...+ . .++++.. +.+...++-+ +|- . ..++-+.. .+ .
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~---~~~~~~~~~~----~Ga-~----------~~i~~~~~~~~~-~- 247 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVDL---NPSKFEQAKK----FGV-T----------EFVNPKDHDKPV-Q- 247 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC---CHHHHHHHHH----cCC-c----------eEEcccccchhH-H-
Confidence 37999999999999999888765 6 5666643 3344444322 221 0 11111100 00 0
Q ss_pred cCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcC-CCEEEEe
Q 019933 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGG-AKKVVIS 209 (334)
Q Consensus 167 ~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aG-aKkVIIS 209 (334)
+...++.- .++|+||||+|.-...+.+-.+++.| -+-+++.
T Consensus 248 ~~v~~~~~--~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 248 EVIAEMTG--GGVDYSFECTGNIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred HHHHHHhC--CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEEC
Confidence 00011111 27999999999755556666666664 4333343
No 209
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=70.89 E-value=21 Score=37.21 Aligned_cols=88 Identities=23% Similarity=0.186 Sum_probs=55.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
.||.|.|+|+-|+.++|.|.+++ .+ |.++|....+.. .. . ..+... .|.+...+.+
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G-~~-v~v~D~~~~~~~--~~------------~------~~~~~~--~i~~~~g~~~ 63 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG-AE-VTVSDDRPAPEG--LA------------A------QPLLLE--GIEVELGSHD 63 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCC-Ce-EEEEcCCCCccc--hh------------h------hhhhcc--CceeecCccc
Confidence 59999999999999999999876 44 456663111100 00 0 000001 1222222222
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaK 204 (334)
. .+|. ..|+||-+=|...+....++..+.|++
T Consensus 64 ~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 64 D-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred h-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 2 4454 789999999999999888888888884
No 210
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=70.43 E-value=10 Score=36.87 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=61.4
Q ss_pred eEEEEcCChhHHHHHHHHHc----------CCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEEC---
Q 019933 91 KVGINGFGRIGRLVLRVAAF----------RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN--- 157 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~----------~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~in--- 157 (334)
+|.|.|.|-+|.-++++|.. .+++.+--+|. ++.-|+ ++.|+-.-++..| .-..||
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NR------Qi~A~~---~~iGk~Kv~vm~e--ri~~InP~c 100 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNR------QIHALL---GDIGKPKVEVMKE--RIKQINPEC 100 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccch------hhHhhh---hhcccHHHHHHHH--HHHhhCCCc
Confidence 79999999999999999974 35676655664 333444 3455533221110 111111
Q ss_pred ---CEEEEEEeccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeE
Q 019933 158 ---GKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMF 218 (334)
Q Consensus 158 ---Gk~I~V~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~ 218 (334)
....-+ .+.+-+++-. .+.||||||......+-..-.+...--.+||-|..... +|+-
T Consensus 101 ~V~~~~~f~-t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTr 163 (263)
T COG1179 101 EVTAINDFI-TEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTR 163 (263)
T ss_pred eEeehHhhh-CHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCce
Confidence 111111 1222233322 27899999999887775555444432335555554432 5643
No 211
>PLN02494 adenosylhomocysteinase
Probab=69.86 E-value=6 Score=41.48 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|+|.|+|.||+.+++.+...+ .+|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999998775 7776664
No 212
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=69.77 E-value=8.8 Score=39.18 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=34.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCC-CceEEEEeCCCCCHHHHhhhh
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~-d~eiVAIND~~~d~~~~ayLl 133 (334)
.|+.|.| +|.||...|+.+.+.+ .|+|+++.- ....+.+.-+.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~a-g~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAA-GKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEec-CCcHHHHHHHH
Confidence 4899999 9999999999998875 599999976 34555554444
No 213
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.73 E-value=8.3 Score=37.74 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV 114 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~ 114 (334)
||+|.|.|.||..++..+..++-+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~ 24 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF 24 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC
Confidence 799999999999998888776533
No 214
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=69.47 E-value=6 Score=39.72 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||+|.|.|.+|..+...+.+.+ ++|++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 8999999999999999988765 7777775
No 215
>PRK07201 short chain dehydrogenase; Provisional
Probab=69.31 E-value=35 Score=35.70 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=25.5
Q ss_pred eEEEEc-CChhHHHHHHHHHc-CCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAF-RDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~-~~d~eiVAIND 121 (334)
||-|-| +|.||+.+++.|.+ ..+.+|+++..
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 899999 99999999999985 23477777765
No 216
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=69.00 E-value=25 Score=35.14 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=24.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
||.|.|.|.+|+.++|.|.+++ .+ |.+.|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~-V~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AE-VTVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CE-EEEEeC
Confidence 5789999999999999998876 55 445663
No 217
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.90 E-value=28 Score=33.59 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAIN 120 (334)
-+|.|+|-|.||..+++.+...+ .+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG-ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 37999999999999999888775 64 66663
No 218
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=68.79 E-value=6.1 Score=39.44 Aligned_cols=31 Identities=32% Similarity=0.270 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|||+|+|.+|+.+++.|...+ ++++..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 48999999999999999998775 77765544
No 219
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=68.62 E-value=6.7 Score=37.81 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||||+|.|++|..+.+.|.+.+ +++...|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEEe
Confidence 8999999999999999998875 6765554
No 220
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=68.57 E-value=26 Score=32.60 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=53.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|-|+| .|.+|..+++++...+ .+++++.. +.+...++.+ +|- . . .++.+.-.+ .+ ..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~---s~~~~~~l~~----~Ga-~---------~-vi~~~~~~~-~~-~v 204 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAG---SDDKVAWLKE----LGF-D---------A-VFNYKTVSL-EE-AL 204 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-C---------E-EEeCCCccH-HH-HH
Confidence 788999 8999999999988775 77776653 3344444432 221 0 0 111100000 00 00
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
. .+...++|+|||++|. ...+.+-.+++.+.+-|.+
T Consensus 205 ~--~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 205 K--EAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred H--HHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 0 0112379999999997 4556666677766644444
No 221
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.38 E-value=7.3 Score=37.49 Aligned_cols=31 Identities=32% Similarity=0.224 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||+|+|.|.+|..+...+..++ ++|+.++-
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEEeC
Confidence 38999999999999999988875 77766653
No 222
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=68.33 E-value=7.6 Score=37.26 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=27.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||-|-| .|.||+.+++.|.++...+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4899999 8999999999998765588888864
No 223
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.27 E-value=31 Score=34.72 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=76.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
-+|+|.|+|-.|...++.+.... .+|+||.- +.+......+. | ....+|.+ |+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~---~~~K~e~a~~l----G-----------Ad~~i~~~--------~~ 220 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR---SEEKLELAKKL----G-----------ADHVINSS--------DS 220 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC---ChHHHHHHHHh----C-----------CcEEEEcC--------Cc
Confidence 48999999999999999887666 89998864 33333222210 0 12333321 11
Q ss_pred CCCC-CCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-CCCCeEEeecCcc-ccCCCCCEEecCCchhhhHHH
Q 019933 170 AEIP-WGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-ADAPMFVVGVNEK-TYKPNMNIVSNASCTTNCLAP 246 (334)
Q Consensus 170 ~~i~-W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-~D~p~~V~GVN~~-~y~~~~~IVSnASCTTncLAP 246 (334)
+.++ ..+ -+|+++++.+ ..+.+.+-..|+.|-+-|++-.|. .+.+.+ +.- ..-.+..|+.+..=|-+=+-=
T Consensus 221 ~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~----~~~~li~~~~~i~GS~~g~~~d~~e 294 (339)
T COG1064 221 DALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLL----PAFLLILKEISIVGSLVGTRADLEE 294 (339)
T ss_pred hhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCC----CHHHhhhcCeEEEEEecCCHHHHHH
Confidence 1111 111 1899999999 888888888888877677777763 221211 000 011134566666666555555
Q ss_pred HHHHHhh
Q 019933 247 LAKVVHE 253 (334)
Q Consensus 247 vlKvL~d 253 (334)
+++...+
T Consensus 295 ~l~f~~~ 301 (339)
T COG1064 295 ALDFAAE 301 (339)
T ss_pred HHHHHHh
Confidence 5555443
No 224
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.16 E-value=8.7 Score=40.16 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHH
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ 129 (334)
|+=+|-|.|+|++||.+.|.+.+++ .+++.|.. |++..
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~---d~~~~ 453 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAG-IPLVVIET---SRTRV 453 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCC-CCEEEEEC---CHHHH
Confidence 3448899999999999999998875 78888853 45543
No 225
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=67.89 E-value=20 Score=35.01 Aligned_cols=86 Identities=21% Similarity=0.118 Sum_probs=49.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-||-|.| +|++|+.+++.+...+--.+.+||- |++..++ .| ++++ +.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p------------------~~~~~~v----------~G--~~~y--~s 54 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTP------------------GKGGTTV----------LG--LPVF--DS 54 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECC------------------CCCccee----------cC--eecc--CC
Confidence 4899999 9999999999887765224445663 1111111 11 1111 12
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.+++|..- ++|+++-+.+...-.+..+...+.|+|.+||
T Consensus 55 v~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 55 VKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred HHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 23333211 2677777777666666666666677776544
No 226
>PLN02427 UDP-apiose/xylose synthase
Probab=67.80 E-value=7.7 Score=37.97 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=27.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||-|-| .|.||+.+++.|.+++..+|+++..
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4899999 9999999999999875478888864
No 227
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=67.69 E-value=37 Score=33.54 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=67.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|.|.|.||..+++++...+ .+++++... +.+...++-+ +|- + ..++.+.. ....
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~--~~~~~~~a~~----lGa---~--------~~i~~~~~-----~~v~ 237 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG-LRVTVISRS--SEKEREAIDR----LGA---D--------SFLVTTDS-----QKMK 237 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC-CeEEEEeCC--hHHhHHHHHh----CCC---c--------EEEcCcCH-----HHHH
Confidence 7899999999999999888775 676666431 1111112211 121 0 11221100 0000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCcc-ccCCCCCEEecCCchhhhHHHHHH
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEK-TYKPNMNIVSNASCTTNCLAPLAK 249 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~-~y~~~~~IVSnASCTTncLAPvlK 249 (334)
+.. .++|+||||+|.-...+.+-..++.|-+-|.+..+..+.+ ++.. .+..+..|...-.++...+.-+++
T Consensus 238 ~~~---~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 309 (375)
T PLN02178 238 EAV---GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLD-----LPIFPLVLGRKMVGGSQIGGMKETQEMLE 309 (375)
T ss_pred Hhh---CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCc-----cCHHHHHhCCeEEEEeCccCHHHHHHHHH
Confidence 111 1689999999976555566666776664444544322211 1111 111233454444445556666777
Q ss_pred HHhh
Q 019933 250 VVHE 253 (334)
Q Consensus 250 vL~d 253 (334)
.+.+
T Consensus 310 l~~~ 313 (375)
T PLN02178 310 FCAK 313 (375)
T ss_pred HHHh
Confidence 7654
No 228
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.68 E-value=7.9 Score=37.40 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||+|.|.|.+|..+.+.|...+ .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG-VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 49999999999999999988764 67666654
No 229
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=67.62 E-value=12 Score=39.87 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCCceeEEEEc-CChhHHHHHHHHHcCCCceE-EEEeCCCCCHHHHhhhh
Q 019933 86 SDGNTKVGING-FGRIGRLVLRVAAFRDDVDV-VAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 86 ~~M~ikVgING-fGrIGR~vlRal~~~~d~ei-VAIND~~~d~~~~ayLl 133 (334)
.++.|||-|-| .|.||+.+.+.|.+++ .++ ++..|+ .|.+.+.-++
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~l-~d~~~v~~~i 424 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGRL-EDRSSLLADI 424 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhCC-CeEEeecccc-ccHHHHHHHH
Confidence 33456999999 9999999999998764 666 455553 4555443333
No 230
>PLN02778 3,5-epimerase/4-reductase
Probab=67.60 E-value=16 Score=34.87 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCceeEEEEc-CChhHHHHHHHHHcCCCceEEE
Q 019933 87 DGNTKVGING-FGRIGRLVLRVAAFRDDVDVVA 118 (334)
Q Consensus 87 ~M~ikVgING-fGrIGR~vlRal~~~~d~eiVA 118 (334)
+|++||-|-| .|.||+.+++.|.+++ .+++.
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 4556999999 9999999999998875 56543
No 231
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=66.84 E-value=7.4 Score=39.91 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|+|.|+|.||+.+++.+...+ .+|+++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEEe
Confidence 38999999999999999998764 7766653
No 232
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.71 E-value=8.4 Score=36.67 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCC---ceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d---~eiVAIND 121 (334)
+||+|.|.|.+|..+.+.+.+.+. .+|+.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 589999999999999999887642 46776764
No 233
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=66.58 E-value=11 Score=35.49 Aligned_cols=92 Identities=20% Similarity=0.055 Sum_probs=55.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
++++|.|+|.||..+.+.+...+ .||+-.|. ..++..+-+.+|-. .. |+-. ..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~--r~~~~~~a~a~~l~---------------~~------i~~~--~~~ 55 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSS--RGPKALAAAAAALG---------------PL------ITGG--SNE 55 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecC--CChhHHHHHHHhhc---------------cc------cccC--ChH
Confidence 59999999999999999887764 77665654 34554444443210 01 1111 111
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
+- -...|+||-+.+-..-.+-.+.+.+.=-.|+||+.-
T Consensus 56 dA----~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 56 DA----AALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HH----HhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 11 125789999888666666565555422257888654
No 234
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=66.58 E-value=5.7 Score=40.42 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=22.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
.+||.||||||+.|.+.+.... +.++.-
T Consensus 148 TLgvlG~GrIGseVA~r~k~~g-m~vI~~ 175 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMG-MHVIGY 175 (406)
T ss_pred EEEEeecccchHHHHHHHHhcC-ceEEee
Confidence 5899999999999999887654 554443
No 235
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=66.54 E-value=11 Score=36.99 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||.|-| .|-||+.+++.|.+++ .+|+++.-
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 4899999 9999999999998875 78877753
No 236
>PRK06988 putative formyltransferase; Provisional
Probab=66.47 E-value=7.9 Score=37.91 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
|++||.+.|++.+|..+|+.|.+++ ++|++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG-VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC-CCEEEE
Confidence 4479999999999999999998864 777766
No 237
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=66.47 E-value=7.8 Score=37.21 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.||+|.|.|.+|..+.+.+.+.+ ++|...|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 38999999999999999998775 67666653
No 238
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.30 E-value=94 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.||-|.|.|.+|...++.|.+.+ .+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 38999999999999999998875 56666653
No 239
>PLN02740 Alcohol dehydrogenase-like
Probab=65.64 E-value=18 Score=35.43 Aligned_cols=99 Identities=25% Similarity=0.315 Sum_probs=52.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEE-EEeccC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VFSKRD 168 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~-V~~~~d 168 (334)
+|.|+|.|.||..+++++...+ . +|+++.. +.+.+..+-+ +|- + -.++-+... -+. +.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~---~~~r~~~a~~----~Ga---~--------~~i~~~~~~~~~~-~~ 260 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGVDI---NPEKFEKGKE----MGI---T--------DFINPKDSDKPVH-ER 260 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEEcC---ChHHHHHHHH----cCC---c--------EEEecccccchHH-HH
Confidence 7999999999999999988775 5 4666532 2233222221 121 0 111111000 000 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcC-CCEEEEeCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGG-AKKVVISAP 211 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aG-aKkVIISaP 211 (334)
..++. .. ++|+||||+|.....+.+-..++.| -+-|++..+
T Consensus 261 v~~~~-~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 261 IREMT-GG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HHHHh-CC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccC
Confidence 00111 12 7999999999765566665666554 444555444
No 240
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.62 E-value=8.2 Score=38.01 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.||+|+|+|++|+.+++.|.+.+ ++++..++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEEC
Confidence 38999999999999999998775 67655444
No 241
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.41 E-value=10 Score=36.19 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|.|.|.+|..+...+...+ ++|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999999888764 7776664
No 242
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=65.27 E-value=36 Score=31.90 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=52.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|.|-|-+|+.+++.+...+ ++++++.. +.+...++-+ +| . + ..++.+...... +
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~---~~~~~~~~~~----~g-~--~--------~~~~~~~~~~~~-~--- 221 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMG-FETVAITR---SPDKRELARK----LG-A--D--------EVVDSGAELDEQ-A--- 221 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC---CHHHHHHHHH----hC-C--c--------EEeccCCcchHH-h---
Confidence 7899998889999999888765 77766654 2333434322 11 0 0 111111000000 0
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
. ..++|+|++|.|.....+.+-.+++.+.+.+.++
T Consensus 222 -~---~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 222 -A---AGGADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -c---cCCCCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 1 1268999999876555566666777655444444
No 243
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=65.12 E-value=3.2 Score=38.32 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
..||.|.|.|-+|..+++.|...+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999987664
No 244
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=64.99 E-value=36 Score=33.04 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~-eiVAIN 120 (334)
-+|.|.|-|.+|..+++++...+ . .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 37899999999999999888775 6 465553
No 245
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=64.60 E-value=10 Score=34.00 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=65.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHH-------hhhhccccccccCCCeEEEeCCCeEEECCEEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM-------AYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKV 163 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~-------ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V 163 (334)
||+|.|.|.+|+.+...+...+ ++|+-+. + +++.+ ...|+..--.|++.... .+ .. . ..|++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d-~--~~~~l~~~~~~i~~~l~~~~~~~~~~~~~-~~--~~--~--~~i~~ 69 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYD-R--SPEALERARKRIERLLDRLVRKGRLSQEE-AD--AA--L--ARISF 69 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE--S--SHHHHHHHHHHHHHHHHHHHHTTTTTHHH-HH--HH--H--HTEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEE-C--ChHHHHhhhhHHHHHHhhhhhhccchhhh-hh--hh--h--hhccc
Confidence 7999999999999998888774 7755553 2 33322 22222111123332110 00 00 0 12333
Q ss_pred EeccCCCCCCCCccCccEEEeccCCCCCHHHH-HHHHHcC--CCEEEEeCCCC----------CCC--eEEe-ecCcccc
Q 019933 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKA-SAHMKGG--AKKVVISAPSA----------DAP--MFVV-GVNEKTY 227 (334)
Q Consensus 164 ~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a-~~hl~aG--aKkVIISaPs~----------D~p--~~V~-GVN~~~y 227 (334)
. .|.+++ .++|+||||...-...++. -+.++.- ...+|.|+.|. +.| .+.+ -.|+-..
T Consensus 70 ~--~dl~~~----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~ 143 (180)
T PF02737_consen 70 T--TDLEEA----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHL 143 (180)
T ss_dssp E--SSGGGG----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT
T ss_pred c--cCHHHH----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEeccccccc
Confidence 2 233332 2899999998754333221 1334432 23466677652 122 2222 2233222
Q ss_pred CCCCCEEecCCchhhhHHHHHHHHh
Q 019933 228 KPNMNIVSNASCTTNCLAPLAKVVH 252 (334)
Q Consensus 228 ~~~~~IVSnASCTTncLAPvlKvL~ 252 (334)
.+--.||..+...-..+.-+...+.
T Consensus 144 ~~lVEvv~~~~T~~~~~~~~~~~~~ 168 (180)
T PF02737_consen 144 MPLVEVVPGPKTSPETVDRVRALLR 168 (180)
T ss_dssp --EEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHH
Confidence 2222577777766666665555554
No 246
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=64.54 E-value=8.9 Score=37.23 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|.|.|.||+.+++.+....--+|..+|
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~ 209 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4999999999999999999875423444454
No 247
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.53 E-value=9.7 Score=35.98 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|+|.|.+|..+...+..++ ++++.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999999988775 6776664
No 248
>PRK06444 prephenate dehydrogenase; Provisional
Probab=64.48 E-value=8.1 Score=35.65 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~ 112 (334)
+||+|+| .|++||.+.+.+.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC
Confidence 3899999 8999999999887653
No 249
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=64.42 E-value=10 Score=34.57 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
|||+|.| .|.+|..+.+.|.+.+ .+|+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 3899997 9999999999998775 565544
No 250
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=63.95 E-value=9.7 Score=34.38 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=26.3
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|-| +|.||+.+++.|.++. .++++++.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r 32 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARG-HEVRAAVR 32 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCC-CEEEEEEe
Confidence 789999 9999999999999984 78777764
No 251
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=63.85 E-value=34 Score=32.68 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=51.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|+.+++.+...+ + .++++.. +.+...++-+ +|. + ..++-+...+ . ++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~---~~~~~~~~~~----~ga---~--------~~i~~~~~~~-~-~~l 233 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG-ASKIIVSEP---SEARRELAEE----LGA---T--------IVLDPTEVDV-V-AEV 233 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHHHHHHH----hCC---C--------EEECCCccCH-H-HHH
Confidence 7899999999999999988775 6 5555532 3333333322 221 0 1122111000 0 000
Q ss_pred CCCCC-CccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPW-GDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W-~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
. .+ ...++|+||||+|.-...+.+-.+++.|.+-+.+
T Consensus 234 ~--~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 234 R--KLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred H--HHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 0 01 1136999999998544455566667766543334
No 252
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=63.81 E-value=7.6 Score=38.24 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=27.2
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC--------CceEEEEeCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVNDP 122 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~--------d~eiVAIND~ 122 (334)
+++|+|+|.|-|||.+++.+.... .+.+|+|.|.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 579999999999999998776432 3678888874
No 253
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=63.49 E-value=1e+02 Score=30.69 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-+|.|.|.|.||..+++++...+ ..++.+.|
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d 217 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG-AAVVIVGD 217 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CceEEEeC
Confidence 37889999999999999888775 66554555
No 254
>PRK05865 hypothetical protein; Provisional
Probab=63.37 E-value=23 Score=39.76 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=25.8
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 899999 8999999999998875 78777754
No 255
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.17 E-value=20 Score=35.36 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~ 112 (334)
.||+|.|. |.||..++-.+..++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc
Confidence 59999997 999999988887654
No 256
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=62.99 E-value=67 Score=30.23 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=52.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.+|+.+++.+...+ .+ ++++.. +.+...++.+|... ..++.+.... .+.--
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g-~~~v~~~~~---s~~~~~~~~~~g~~---------------~~~~~~~~~~-~~~i~ 227 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASG-ARKVIVSDL---NEFRLEFAKKLGAD---------------YTIDAAEEDL-VEKVR 227 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHhCCc---------------EEecCCccCH-HHHHH
Confidence 7899999999999999887764 66 555532 34444444332210 1111110000 00000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
...+ +.++|+||+|+|.-...+.+..+++.+.+-+.+.
T Consensus 228 ~~~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 228 ELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred HHhC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 0011 2368999999986444555667777776544443
No 257
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.94 E-value=30 Score=32.83 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=54.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|.|.|.+|+.+++.+...+ .+++++.. +.+...++-++ |- ...++.+.-.+. +...
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----g~-----------~~~i~~~~~~~~--~~~~ 224 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG-FRTVAISR---GSDKADLARKL----GA-----------HHYIDTSKEDVA--EALQ 224 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeC---ChHHHHHHHHc----CC-----------cEEecCCCccHH--HHHH
Confidence 7899999999999999988875 67777654 23333333222 20 011221110000 0001
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
.++ ++|+|+|++|.-...+.+-.+++.+..-|.+..
T Consensus 225 --~~~--~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 225 --ELG--GAKLILATAPNAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred --hcC--CCCEEEECCCchHHHHHHHHHcccCCEEEEEec
Confidence 122 689999998755566666777776665444543
No 258
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=62.68 E-value=4 Score=36.45 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~ 112 (334)
||.|.|.|-+|..++..|...+
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999887664
No 259
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.48 E-value=21 Score=34.87 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=53.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-+|.|+|.|.||.+.++++...+ . +|+++.. +.+...++.++ |- . -.++...- ..+
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~---~~~~~~~a~~~----Ga-~----------~~i~~~~~----~~~ 243 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDI---NPAKFELAKKL----GA-T----------DCVNPNDY----DKP 243 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC---CHHHHHHHHHh----CC-C----------eEEccccc----chh
Confidence 37999999999999999887775 5 5666632 34444444332 21 0 01111000 000
Q ss_pred C-CCC-CCCccCccEEEeccCCCCCHHHHHHHHHcC-CCEEEEeCC
Q 019933 169 P-AEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGG-AKKVVISAP 211 (334)
Q Consensus 169 P-~~i-~W~~~gvDiVvEsTG~f~t~e~a~~hl~aG-aKkVIISaP 211 (334)
. +.+ .....++|+||||+|.-.+.+.+-..++.| .+-|++..+
T Consensus 244 ~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 244 IQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred HHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEecc
Confidence 0 000 001127999999999654555565666554 434445443
No 260
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.32 E-value=13 Score=35.90 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=23.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC-CceEEEE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAV 119 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~-d~eiVAI 119 (334)
++||+|.|.|.||..+...|.+.+ ++.+++-
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 359999999999999998887753 3444433
No 261
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=61.90 E-value=57 Score=29.69 Aligned_cols=90 Identities=24% Similarity=0.350 Sum_probs=51.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+....+-+ +|... .+ ++...
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~---~~~~~~~~~~----~g~~~---------~~-~~~~~--------- 152 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG-AREVVGVDP---DAARRELAEA----LGPAD---------PV-AADTA--------- 152 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEECC---CHHHHHHHHH----cCCCc---------cc-cccch---------
Confidence 7899999999999999888765 66 666632 3333332222 22100 01 11000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.. +...++|++|+|+|.-...+.+..+++.+.+-+.+.
T Consensus 153 ~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 153 DE--IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEe
Confidence 00 122379999999886545555666776665433343
No 262
>PRK07680 late competence protein ComER; Validated
Probab=61.78 E-value=11 Score=35.39 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~ 112 (334)
||+|+|.|.+|+.+++.+.+.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCC
Confidence 7999999999999999988764
No 263
>PRK06545 prephenate dehydrogenase; Validated
Probab=61.68 E-value=10 Score=37.55 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCC-CceEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~-d~eiVAI 119 (334)
||+|+|+|.||..+.+.+...+ ++.+...
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~ 31 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGY 31 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEe
Confidence 7999999999999999998764 3444443
No 264
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=61.59 E-value=12 Score=38.81 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=25.1
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+||||+|.|.||+.+...+...+ ++|+..+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G-~~V~v~D 34 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAG-IDVAVFD 34 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCC-CeEEEEe
Confidence 348999999999999999888775 7765554
No 265
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.57 E-value=36 Score=34.06 Aligned_cols=88 Identities=25% Similarity=0.248 Sum_probs=49.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
.+|.|.|-|++|+.+++.|.+++ .+|+.+ |. .+.+.+...++ + |.-.| ++++....+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~-~~~~~~~~~~~-~-----------------l~~~~--~~~~~~~~~ 62 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG-AKVILT-DE-KEEDQLKEALE-E-----------------LGELG--IELVLGEYP 62 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC-CchHHHHHHHH-H-----------------HHhcC--CEEEeCCcc
Confidence 58999999999999999999886 565444 53 22121211111 0 00001 112221112
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGa 203 (334)
.++ ..+.|+||-++|...+.+......+.|.
T Consensus 63 ~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 63 EEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred hhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 111 1268999999998777765555555555
No 266
>PRK10083 putative oxidoreductase; Provisional
Probab=61.45 E-value=39 Score=31.88 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred eEEEEcCChhHHHHHHHHHc-CCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~-~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.+|..+++.+.. .+ ..++.+-+. +.+.+..+.+ +|. + ..++-+.-.+ . +..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~--~~~~~~~~~~----~Ga-~----------~~i~~~~~~~-~-~~~ 222 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYN-VKAVIVADR--IDERLALAKE----SGA-D----------WVINNAQEPL-G-EAL 222 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcC--CHHHHHHHHH----hCC-c----------EEecCccccH-H-HHH
Confidence 78999999999999888764 34 553433332 3444433332 221 0 0111110000 0 001
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
... ..++|+||||+|.-.+...+..+++.|.+-+.+..
T Consensus 223 ~~~---g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 223 EEK---GIKPTLIIDAACHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred hcC---CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 111 12568999999964445566677777765554543
No 267
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=61.30 E-value=51 Score=31.22 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=52.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEE-EEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL-IKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~-I~V~~~~dP 169 (334)
+|.|+|.|.+|+.+++.+...+ ++++++.. +.+..-.+.+ +|. . -.++.+. -.+ . +..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~----~g~-~----------~~i~~~~~~~~-~-~~~ 226 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG-ARVIAVDI---DDDKLELARE----LGA-V----------ATVNASEVEDV-A-AAV 226 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEeC---CHHHHHHHHH----hCC-C----------EEEccccchhH-H-HHH
Confidence 7999999999999999888774 78777643 2333333322 221 0 0111110 000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
..+..+ ++|+||+|+|.-...+.+-.+++.+.+-+.+.
T Consensus 227 ~~~~~~--~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 227 RDLTGG--GAHVSVDALGIPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred HHHhCC--CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeC
Confidence 111122 78999999985444555667777666443343
No 268
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.19 E-value=12 Score=35.60 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-||+|.|.|.+|+.+...+..++ ++|+.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEe
Confidence 37999999999999999988775 7776664
No 269
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=61.04 E-value=12 Score=35.50 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|||-|.| .|.+|+.+.+.+.++ .+++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence 5999999 999999999999876 489999853
No 270
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.03 E-value=44 Score=34.32 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-||+|.|+|+-|+.++|.|..++ .++ .+.|
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d 38 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQ-ALTL 38 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEE-EEEc
Confidence 48999999999999999998875 553 3455
No 271
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.80 E-value=11 Score=38.82 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|+|.|+|.||+.+++.+...+ .+|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 38999999999999999998775 6755543
No 272
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=60.47 E-value=27 Score=32.16 Aligned_cols=96 Identities=23% Similarity=0.262 Sum_probs=51.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|..+++.+...+ ++ ++++.. +.+...++-+ +|- . -.++.+.-...+ .--
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g-~~~v~~~~~---~~~~~~~~~~----~g~---~--------~~~~~~~~~~~~-~l~ 191 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAG-ARRVIAIDR---RPARLALARE----LGA---T--------EVVTDDSEAIVE-RVR 191 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHH----hCC---c--------eEecCCCcCHHH-HHH
Confidence 7899999999999999888774 77 766654 3333332222 121 0 011110000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
+..+ ..++|++++|.|.-...+.+..+++.+.+-+.+
T Consensus 192 ~~~~--~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 192 ELTG--GAGADVVIEAVGHQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred HHcC--CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 0011 237999999998654556666777766533334
No 273
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.35 E-value=30 Score=32.38 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=52.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+...++-++ |. + ..++.+.... ..+
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~---~~~~~~~~~~~----g~---~--------~~~~~~~~~~-~~~-- 219 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEP---NEEKLELAKKL----GA---T--------ETVDPSREDP-EAQ-- 219 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHh----CC---e--------EEecCCCCCH-HHH--
Confidence 7899999999999999888775 65 544432 34444444222 10 0 1111110000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
...+ ..++|++|+|+|.-...+.+..+++.+.+-+.++
T Consensus 220 ~~~~--~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 220 KEDN--PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred HHhc--CCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence 0011 2379999999985445556667787766444343
No 274
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.29 E-value=12 Score=35.49 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
||+|.|.|.+|+.+...+.+++ ++|+.++- +++.+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~---~~~~~~~~ 40 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDI---KQEQLESA 40 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeC---CHHHHHHH
Confidence 8999999999999999888764 67665542 44444443
No 275
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.21 E-value=53 Score=31.87 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCc-eEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~-eiVAI 119 (334)
-+|.|+|-|.||...++.+...+ . .++++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~ 217 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG-ASRIIGI 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37999999999999999888775 5 46655
No 276
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.13 E-value=59 Score=33.40 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||.|.|+|..|+.+++.|...+ .++ .+.|
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G-~~V-~~~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG-CDV-VVAD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEE-EEEC
Confidence 7999999999999999998876 554 4445
No 277
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=59.92 E-value=35 Score=32.23 Aligned_cols=95 Identities=29% Similarity=0.347 Sum_probs=51.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|+.+++.+...+ ++ ++++.. +.+...++-+ +|. ...++.+... .+ +.
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~---~~~~~~~l~~----~g~-----------~~~~~~~~~~-~~--~~ 219 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG-AKRVIAVDI---DDEKLAVARE----LGA-----------DDTINPKEED-VE--KV 219 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHH----cCC-----------CEEecCcccc-HH--HH
Confidence 7899999999999999887765 65 666643 2333333322 121 0111111000 00 00
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
..+. ...++|+|++|+|.-...+.+..+++.+.+-+.+
T Consensus 220 ~~~~-~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 220 RELT-EGRGADLVIEAAGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0000 1125899999998655556666777766543333
No 278
>PLN02827 Alcohol dehydrogenase-like
Probab=59.80 E-value=25 Score=34.59 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=23.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAI 119 (334)
-+|.|+|.|.||..+++++...+ .. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37899999999999999888775 64 5554
No 279
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=59.54 E-value=41 Score=31.28 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=53.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| -|.+|..+++.+...+ ++++++.. +.+..-++-++ |- . ..++.+... .+.-
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~~----g~--~---------~v~~~~~~~---~~~~ 206 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG-YEVVASTG---KADAADYLKKL----GA--K---------EVIPREELQ---EESI 206 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CeEEEEec---CHHHHHHHHHc----CC--C---------EEEcchhHH---HHHH
Confidence 789999 4999999999998775 77776654 22333333221 10 0 111111100 0000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
.. +...++|+|+||+|. ...+.+-.+++.+..-+.+..
T Consensus 207 ~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 207 KP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred Hh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 11 122368999999997 455666677776664444443
No 280
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.42 E-value=28 Score=33.26 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAI 119 (334)
+|.|+|-|.+|..+++.+...+ .+ ++++
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~ 191 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG-AKSVTAI 191 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 8999999999999999888775 65 4444
No 281
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=59.30 E-value=16 Score=30.69 Aligned_cols=31 Identities=35% Similarity=0.274 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|.|.|.+|+.+++.+.+.+..++..++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 4899999999999999999876422344343
No 282
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.90 E-value=14 Score=34.56 Aligned_cols=29 Identities=38% Similarity=0.381 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||+|.|.|.+|..+...|.+.+ .+|..+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 8999999999999999888764 5555554
No 283
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=58.84 E-value=4.2 Score=37.60 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=24.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
..||.|.|.|-+|..+++.|...+ +.-+.|-|
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD 52 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD 52 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 459999999999999999997764 44333433
No 284
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=58.76 E-value=92 Score=27.53 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|.|+|.|.+|+.+++.+...+ .+++++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~ 165 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG-ARVIVTD 165 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEc
Confidence 37999997779999999888765 7776664
No 285
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.75 E-value=72 Score=30.56 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=24.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIN 120 (334)
+|.|+|.|.+|+.+++.+...+ . .++++.
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~ 209 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG-ARRVIVID 209 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 7899999999999999888775 6 676664
No 286
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=58.74 E-value=59 Score=31.52 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=51.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEE-EEEEeccC
Q 019933 91 KVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL-IKVFSKRD 168 (334)
Q Consensus 91 kVgINGf-GrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~-I~V~~~~d 168 (334)
+|.|+|- |.||..+++++...+ .+++++-. +.+...++.+ .+|- ...++.+. -.+ .+ .
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~---~~~k~~~~~~---~lGa-----------~~vi~~~~~~~~-~~-~ 220 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG-CYVVGSAG---SSQKVDLLKN---KLGF-----------DEAFNYKEEPDL-DA-A 220 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEcC---CHHHHHHHHH---hcCC-----------CEEEECCCcccH-HH-H
Confidence 7999995 999999999888775 67766532 3333333321 0120 01111100 000 00 0
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
..++ ...++|+||||+|.- ..+.+-.+++.|.+-|++
T Consensus 221 i~~~--~~~gvD~v~d~vG~~-~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 221 LKRY--FPEGIDIYFDNVGGD-MLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHH--CCCCcEEEEECCCHH-HHHHHHHHhccCCEEEEE
Confidence 0011 112799999999963 445555667766654444
No 287
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.61 E-value=16 Score=36.97 Aligned_cols=96 Identities=29% Similarity=0.389 Sum_probs=54.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEE--EEEeccC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLI--KVFSKRD 168 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I--~V~~~~d 168 (334)
.|+|-|+|.+|..+++-+..++-=.|++|. +.++. |++--.+| .-. .+|-+.. .+ +|.
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvD---iN~~K----f~~ak~fG----aTe-------~iNp~d~~~~i-~ev- 254 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVD---INPDK----FEKAKEFG----ATE-------FINPKDLKKPI-QEV- 254 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEe---cCHHH----HHHHHhcC----cce-------ecChhhccccH-HHH-
Confidence 689999999999999888777656677762 12332 22111122 111 1222100 11 111
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcC-CCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGG-AKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aG-aKkVII 208 (334)
..++ .+.|+||-|||+|.-.++..|-.--..| =+.|+|
T Consensus 255 i~Em--TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 255 IIEM--TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHHH--hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 0111 2359999999999888877665444455 334565
No 288
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=58.61 E-value=81 Score=30.41 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=51.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+..-++-++ |. + -.++.+.... .+.--
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~---s~~~~~~~~~~----g~---~--------~v~~~~~~~~-~~~l~ 249 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDV---RDEKLAKAKEL----GA---T--------HTVNAAKEDA-VAAIR 249 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHHh----CC---c--------eEecCCcccH-HHHHH
Confidence 7889999999999999998765 66 665543 22333233221 11 0 0111110000 00000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
...+ +.++|+||+|+|.-...+.+..+++.+.+-|.+.
T Consensus 250 ~~~~--~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 250 EITG--GRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred HHhC--CCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 0011 2368999999986423455667888776444443
No 289
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.55 E-value=16 Score=34.64 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|.|.|.+|..+...+...+ ++|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 58999999999999999888774 7766554
No 290
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=58.54 E-value=25 Score=32.72 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=53.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|-|+|-|.+|+.+++++...+ +.++++.. +.+...++-+ +|. . . .++.+.. ...+. ..
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G-~~V~~~~~---s~~~~~~~~~----~g~-~-~---------~~~~~~~-~~~~~-~~ 226 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG-AAVIAVDI---KEEKLELAKE----LGA-D-E---------VLNSLDD-SPKDK-KA 226 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CEEEEEcC---CHHHHHHHHH----hCC-C-E---------EEcCCCc-CHHHH-HH
Confidence 7888899999999999888775 77766643 3344434322 121 0 0 0110000 00000 00
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
..+ ..++|+|++|.|.-...+.+..+++.|.+-+.+
T Consensus 227 ~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred Hhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 111 237899999998655566677888877754444
No 291
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=58.38 E-value=22 Score=33.50 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=51.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC-
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD- 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d- 168 (334)
-+|.|+|.|.+|..+++.+...+ .+++.+.+ ...+...++-+| |. . ..++.+....+....
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~--~~~~~~~~~~~~----g~-~----------~~i~~~~~~~~~~~~~ 224 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKARG-VGPIVASD--FSPERRALALAM----GA-D----------IVVDPAADSPFAAWAA 224 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEC--CCHHHHHHHHHc----CC-c----------EEEcCCCcCHHHHHHH
Confidence 37899999999999998887765 66444444 234444444332 21 0 011110000000000
Q ss_pred -CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 -PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 -P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
-...+ ..++|+||||.|.......+-.+++.+..-+.+
T Consensus 225 ~~~~~~--~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 225 ELARAG--GPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred HHHHhC--CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 00011 136999999998643445556677766643333
No 292
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=58.34 E-value=67 Score=30.26 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=52.5
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| -|.||..+++.+...+ .+++++.. +.+....+.+ +|- . ..++.+.-..+.+. .
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~---s~~~~~~~~~----lGa-~----------~vi~~~~~~~~~~~-~ 200 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAG---SDEKVAYLKK----LGF-D----------VAFNYKTVKSLEET-L 200 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-C----------EEEeccccccHHHH-H
Confidence 789999 7999999999888775 67766643 3344444422 221 0 11111100000000 0
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.... ..++|+||||+|.- ..+.+-.+++.|.+-|.+.
T Consensus 201 ~~~~--~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 201 KKAS--PDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHhC--CCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEec
Confidence 0111 13799999999964 3355556677666544443
No 293
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=58.12 E-value=26 Score=34.00 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=52.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.+|..+++++...+ .+ ++++.. +.+....+-+ +|. ...++.+...+. +..
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~---~~~k~~~~~~----~g~-----------~~~i~~~~~~~~--~~v 247 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDI---VDSRLELAKE----LGA-----------THVINPKEEDLV--AAI 247 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHH----cCC-----------cEEecCCCcCHH--HHH
Confidence 7899999999999999888775 64 555533 2232222211 221 011111100000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.+.. ..++|+|+||+|.-...+.+..+++.+.+-|.+.
T Consensus 248 ~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 248 REIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred HHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 1111 2379999999986445566677787776444443
No 294
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=57.66 E-value=6.9 Score=36.90 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
..||.|.|.|-+|..+++.|...+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 359999999999999999988764
No 295
>PRK08655 prephenate dehydrogenase; Provisional
Probab=57.43 E-value=14 Score=37.82 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||+|.| +|.||+.+.+.+.+.+ .+|..++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 899998 9999999999998765 6665554
No 296
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=56.94 E-value=26 Score=35.74 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=27.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr 152 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDN 152 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4999999 9999999999999885 78888854
No 297
>PLN02702 L-idonate 5-dehydrogenase
Probab=56.73 E-value=28 Score=33.57 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=52.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec-cCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-RDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~-~dP 169 (334)
+|.|+|-|.+|..+++++...+ .+++.+.+. +.+....+-+ +|- + . .+.++.+.-...+. ...
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~--~~~~~~~~~~----~g~-~-~-------~~~~~~~~~~~~~~~~~~ 247 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFG-APRIVIVDV--DDERLSVAKQ----LGA-D-E-------IVLVSTNIEDVESEVEEI 247 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC--CHHHHHHHHH----hCC-C-E-------EEecCcccccHHHHHHHH
Confidence 7899999999999999888765 553333342 3333322222 221 0 0 11111110000000 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.+.. + .++|+||||+|.-...+.+-.+++.+.+-|++.
T Consensus 248 ~~~~-~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 248 QKAM-G-GGIDVSFDCVGFNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hhhc-C-CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 0011 1 268999999996445667777888776444443
No 298
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=56.49 E-value=23 Score=34.36 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=29.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCC---ceEEEEeCCCCCHHHHhhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d---~eiVAIND~~~d~~~~ayLl 133 (334)
+|||+.|+|.+|+.+++-+.+++. .+|. |.++ +.+...++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~--~~e~~~~l~ 45 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNR--SEEKRAALA 45 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCC--CHHHHHHHH
Confidence 599999999999999999988762 3444 4443 455554443
No 299
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=56.44 E-value=13 Score=38.74 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=30.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLl 133 (334)
.+|||+|+|.+|..+.+.|.+++ ++|...|- +.+.+.-+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~dr---~~~~~~~l~ 41 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYNR---TYEKTEEFV 41 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEeC---CHHHHHHHH
Confidence 48999999999999999999875 78766653 555544443
No 300
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=55.96 E-value=72 Score=30.30 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=51.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECC-EEEEEEeccC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSKRD 168 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inG-k~I~V~~~~d 168 (334)
+|.|+| .|.+|..+++.+..++ .+++++.. +.+....+-+ .+|- . ..++. +...+ . +.
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~---~~~~~~~~~~---~lGa-~----------~vi~~~~~~~~-~-~~ 213 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG-CYVVGSAG---SDEKVDLLKN---KLGF-D----------DAFNYKEEPDL-D-AA 213 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH---hcCC-c----------eeEEcCCcccH-H-HH
Confidence 789999 5999999999888775 67666543 2333333321 0121 0 01110 00000 0 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
..... ..++|+|||++|. ...+.+-.+++.+.+-|.+
T Consensus 214 i~~~~--~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 214 LKRYF--PNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred HHHhC--CCCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 01111 1379999999996 4455666677766644444
No 301
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=55.69 E-value=1.4e+02 Score=27.42 Aligned_cols=89 Identities=26% Similarity=0.372 Sum_probs=53.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-+|.|.| .|.+|+.+.+.+...+ .++.++.. +.+..-++.+ +|. . ......+ +
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~-~---------~~~~~~~--------~ 187 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG-AHVVAVVG---SPARAEGLRE----LGA-A---------EVVVGGS--------E 187 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-c---------EEEeccc--------c
Confidence 3788999 5999999999888765 67666643 2333333322 221 0 0111111 0
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
+.+.++|+|+||+|.- ..+.+-.+++.+.+-|.+..
T Consensus 188 -----~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 188 -----LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVGS 223 (305)
T ss_pred -----ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEec
Confidence 1123799999999964 55667778887765555543
No 302
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.61 E-value=61 Score=33.31 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||.|.|+|+.|+.++|.|..++ .++.+ .|
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G-~~v~~-~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG-ARLRV-AD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC-CEEEE-Ec
Confidence 7999999999999999999886 66544 45
No 303
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=55.54 E-value=57 Score=33.11 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHH-HHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~-vlRal~~~~d~eiVAIND~ 122 (334)
.||.|.|.|..|+. ++|.|.+++ .+| .+.|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECC
Confidence 38999999999999 799998875 664 45664
No 304
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=55.38 E-value=23 Score=27.58 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFR 111 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~ 111 (334)
.+++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999998876
No 305
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=55.28 E-value=16 Score=37.07 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|+|.|+|.||+.+++.|...+-.+|+.+|.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 48999999999999999998765245666664
No 306
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=55.09 E-value=69 Score=29.60 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=51.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| .|.+|..+++++...+ .+++.+.. +.+...++.++ |- ...++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~~----g~-----------~~~~~~~~~~----~~~ 205 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG-YTVVALTG---KEEQADYLKSL----GA-----------SEVLDREDLL----DES 205 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHhc----CC-----------cEEEcchhHH----HHH
Confidence 689999 6999999999888765 66555433 33444444332 21 0111111100 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.+ .+...++|+|++|+|. ...+.+..++..+..-|.+.
T Consensus 206 ~~-~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g 243 (325)
T cd05280 206 KK-PLLKARWAGAIDTVGG-DVLANLLKQTKYGGVVASCG 243 (325)
T ss_pred HH-HhcCCCccEEEECCch-HHHHHHHHhhcCCCEEEEEe
Confidence 00 0122368999999997 45566666776555333343
No 307
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=54.76 E-value=1.3e+02 Score=27.72 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=25.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-+|.|+| .|.+|+.+++++...+ .+++++.+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~ 172 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG-INVINLVR 172 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC-CeEEEEec
Confidence 3789998 7999999999988875 77777765
No 308
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.72 E-value=12 Score=36.59 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=32.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccc
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYD 136 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYD 136 (334)
++||.+|+||.|..+.+.+.++. -++|+- | .+++.+..|-.|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y-D--~n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY-D--VNQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE-c--CCHHHHHHHHhcC
Confidence 38999999999999999998875 777775 2 3566666666544
No 309
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.62 E-value=17 Score=36.21 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|.|+|++|+.+++.|.+++ .+++.|.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~-~~v~vid 261 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEG-YSVKLIE 261 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 58999999999999999988764 7777774
No 310
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=54.42 E-value=26 Score=33.16 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=22.9
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
||-|-| .|-||+.+.+.|.+++ +++++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 899999 8999999999998876 45555
No 311
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=54.23 E-value=54 Score=31.05 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=26.7
Q ss_pred ceeEEEEc-CChhHHHHHHHHHcCCCce-EEEEeC
Q 019933 89 NTKVGING-FGRIGRLVLRVAAFRDDVD-VVAVND 121 (334)
Q Consensus 89 ~ikVgING-fGrIGR~vlRal~~~~d~e-iVAIND 121 (334)
++.+-|.| +|..|+-+++.+.|.+.|- +++|-.
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 35788999 9999999999999998774 555543
No 312
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=54.06 E-value=26 Score=31.98 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=25.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CEEEEEec
Confidence 4999999 8999999999998874 77776643
No 313
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.01 E-value=35 Score=34.75 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||+|.|+|+.|+.+++.|..++ .++ .+.|
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D 44 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLG-AKV-TAFD 44 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CEE-EEEC
Confidence 8999999999999999998876 553 4455
No 314
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=53.91 E-value=15 Score=37.67 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
+.+|||.|||..|+.+.+-+...+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 689999999999999999888765
No 315
>PRK08219 short chain dehydrogenase; Provisional
Probab=53.77 E-value=18 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=24.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.++-|-| .|.||+.+++.|.++ .+|+++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 4789999 999999999999876 67777753
No 316
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.39 E-value=18 Score=36.31 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-||.|.|+|.+|+.+++.+.+++ .+|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~g~D 33 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG-VYVIGVD 33 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999998876 5655543
No 317
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=53.34 E-value=70 Score=33.88 Aligned_cols=32 Identities=28% Similarity=0.161 Sum_probs=25.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
.-||.|.|.|.||...++.+...+ -+|++ -|.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a-~D~ 196 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG-AIVRA-FDT 196 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CEEEE-EeC
Confidence 359999999999999999988776 35444 453
No 318
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=53.14 E-value=74 Score=29.61 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=51.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-+|.|+| .|.+|+.+++.+...+ .+++++.. +.+...++.+ .+|. . . .++.+.... . +.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~---~~g~-~-~---------~~~~~~~~~-~-~~ 206 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAG---SDEKCRWLVE---ELGF-D-A---------AINYKTPDL-A-EA 206 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHh---hcCC-c-e---------EEecCChhH-H-HH
Confidence 3789999 7999999999888765 67766643 3344444432 1121 0 0 011000000 0 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
... +...++|+||||+|.. ..+.+-.+++.+.+-+.+
T Consensus 207 v~~--~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 207 LKE--AAPDGIDVYFDNVGGE-ILDAALTLLNKGGRIALC 243 (329)
T ss_pred HHH--hccCCceEEEEcchHH-HHHHHHHhcCCCceEEEE
Confidence 011 1123799999999973 445556677666543334
No 319
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=53.14 E-value=19 Score=34.79 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=21.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
.+||+|.|.|.||..+.-.|.+.+ .+|.-|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv 31 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLI 31 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEE
Confidence 459999999999998877776553 343333
No 320
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.01 E-value=84 Score=31.75 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=49.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCC-ceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEec-c
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-R 167 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d-~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~-~ 167 (334)
.||.|.|.|..|+..++.|+.... .+|. +.|....+... +.|.- | ++++.. .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~----------------------~~l~~-g--~~~~~g~~ 61 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQ----------------------EQLPE-D--VELHSGGW 61 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhH----------------------HHhhc-C--CEEEeCCC
Confidence 379999999999999999987743 5543 55631111000 01210 1 223222 3
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGa 203 (334)
++++++ +.|+||-|.|.-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 455552 57899999998766655554455554
No 321
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=52.98 E-value=25 Score=33.84 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||-|.| .|.||+.+++.|.+++ .+|+++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 3899999 9999999999999875 78877644
No 322
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.84 E-value=63 Score=32.32 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=23.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|.|.|++|+..++.|.+.+ .+|+. .|
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d 35 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG-ANVTV-ND 35 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC-CEEEE-Ec
Confidence 7899999999999999998876 66444 45
No 323
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.65 E-value=6.8 Score=36.94 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||.|.|.|-+|..+++.|...+
T Consensus 25 ~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998764
No 324
>PLN02240 UDP-glucose 4-epimerase
Probab=52.22 E-value=24 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.0
Q ss_pred ceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
..||-|-| +|.||+.+++.|.+++ .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 35899999 9999999999998875 78888753
No 325
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=52.09 E-value=6.4 Score=36.12 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=24.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
..||+|.|.|.+|..++..|...+ +.-+.+-|
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD 52 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVD 52 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 458999999999999999887764 54333444
No 326
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=52.08 E-value=51 Score=30.98 Aligned_cols=97 Identities=22% Similarity=0.335 Sum_probs=52.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|+|-|.+|..+++++...+...++++.. +.+....+-+ +|- . -.++.+.. + .+ ...
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~----~g~-~----------~~~~~~~~-~-~~-~i~ 228 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR---SEEALKLAER----LGA-D----------HVLNASDD-V-VE-EVR 228 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHH----hCC-c----------EEEcCCcc-H-HH-HHH
Confidence 7899997779999999888765477777654 2233323322 221 0 01111110 0 00 000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
++. ...++|+|+||+|.-...+.+-.++..+.+-+.++
T Consensus 229 ~~~-~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 229 ELT-GGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred HHh-CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 000 11368999999996444555666777666444443
No 327
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=52.01 E-value=50 Score=32.36 Aligned_cols=85 Identities=20% Similarity=0.100 Sum_probs=49.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
.||-|.| +|.+|+.+++.+.+.+ + .+..||--. -||. +.|. +.+ +
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~~----------~~~~------------------v~G~--~~y--~ 55 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPGK----------GGTT------------------VLGL--PVF--N 55 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCCC----------CCCe------------------EeCe--ecc--C
Confidence 5899999 9999999999998754 4 444676410 0111 1121 111 1
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
+.+++|=.. ++|++|-+++.....+..+.-.+.|+|.+||
T Consensus 56 sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 56 TVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 223333100 2678877777666666666666777776444
No 328
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=51.87 E-value=20 Score=35.91 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-||.|.|+|++|+.+++.+...+ .+|+.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999998775 6766665
No 329
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=51.79 E-value=26 Score=30.74 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.||.|.|.|++|+..++++...+ .+++.+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred eEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 59999999999999999998876 77777655
No 330
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=51.71 E-value=67 Score=35.39 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHH-HHHHHcCCCceEEEEeCC
Q 019933 91 KVGINGFGRIGRLV-LRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 91 kVgINGfGrIGR~v-lRal~~~~d~eiVAIND~ 122 (334)
+|.|.|.|..|+.. +|.|.+++ .+| .+.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G-~~V-~~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG-YSV-SGSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC-CeE-EEECC
Confidence 69999999999997 88888875 664 45664
No 331
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=51.69 E-value=19 Score=36.43 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhc
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK 134 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlk 134 (334)
||+|.|.|.+|..+...+. . .++|++++- +.+.+.-+.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~---d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDI---LPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEEC---CHHHHHHHHc
Confidence 8999999999998886554 4 488888863 5666655544
No 332
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=51.38 E-value=20 Score=38.59 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.2
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC-CceEEEEe
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVN 120 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~-d~eiVAIN 120 (334)
..||+|.|+|.+|+.+.+.+...+ ..+|++++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d 35 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVD 35 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 358999999999999999998765 23566654
No 333
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.20 E-value=36 Score=32.16 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=32.8
Q ss_pred cCCcccccccCCccccCCCCCC-ceeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 67 IQPIRATATEIPPTIQKSRSDG-NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~M-~ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+-|.+.+.+..+..... ...| ..+|-|.| .|-||+.+++.+.+++ .+|+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~ 71 (293)
T PRK05866 18 MRPPISPQLLINRPPRQ-PVDLTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVA 71 (293)
T ss_pred cCCCCCchhhcCCCCCC-CcCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 34444444444432222 2223 24688999 8999999999998875 6776664
No 334
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=51.10 E-value=61 Score=34.38 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=72.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
-||.|.|.|++|+..++.+...+ ..++++ |. +.+.+...-++.-.+-.++. . +++ =.-+|..-.+.++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~v~-d~--~~~rle~a~~lGa~~v~v~~--~-e~g--~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVRAF-DT--RPEVKEQVQSMGAEFLELDF--K-EEG--GSGDGYAKVMSEEFIA 235 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC--CHHHHHHHHHcCCeEEeccc--c-ccc--cccccceeecCHHHHH
Confidence 59999999999999999988775 344333 42 33333322222111101110 0 000 0011211112111110
Q ss_pred ---CCCCCCccCccEEEecc---CC----CCCHHHHHHHHHcCCCEEEEeCCC---CC------CCeEEe--ecCccccC
Q 019933 170 ---AEIPWGDYGVDYVVESS---GV----FTTIAKASAHMKGGAKKVVISAPS---AD------APMFVV--GVNEKTYK 228 (334)
Q Consensus 170 ---~~i~W~~~gvDiVvEsT---G~----f~t~e~a~~hl~aGaKkVIISaPs---~D------~p~~V~--GVN~~~y~ 228 (334)
+.++=.-.++|+||.|. |. +++.+. -.-++.|. ||+.-.. -+ .++++. ||.+--++
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~em-v~~MKpGs--vIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~ 312 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPAPKLITEEM-VDSMKAGS--VIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT 312 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHH-HhhCCCCC--EEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence 00110013699999999 54 355555 44577787 6763321 11 356664 57766666
Q ss_pred CCCCEEe--cCCchhhhHHHHHHHHh
Q 019933 229 PNMNIVS--NASCTTNCLAPLAKVVH 252 (334)
Q Consensus 229 ~~~~IVS--nASCTTncLAPvlKvL~ 252 (334)
+-..-+. ..-=-.|.|.+.++-|-
T Consensus 313 nlPs~~p~~AS~l~s~nl~~~l~~l~ 338 (511)
T TIGR00561 313 DLPSRLPTQSSQLYGTNLVNLLKLLC 338 (511)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHH
Confidence 5211111 11223566777777774
No 335
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=50.80 E-value=18 Score=36.09 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|||.+.|.|.|||.++..++.+.+.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 3899999999999776666665568887775
No 336
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.74 E-value=25 Score=31.57 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.5
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|..+|-|.| .|.||+.+++.+.+++ ..++++..
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 334788999 9999999999999875 77777643
No 337
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=50.65 E-value=29 Score=32.73 Aligned_cols=92 Identities=24% Similarity=0.275 Sum_probs=51.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-+|.|+|.|.+|..+++.+..++ + .++++ +. +.+...++-+| |.. .+...+. . +.. .+ .+..
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~-~~--~~~~~~~~~~~----g~~--~~~~~~~-~--~~~---~l-~~~~ 231 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG-AARVFAV-DP--VPERLERAAAL----GAE--PINFEDA-E--PVE---RV-REAT 231 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CceEEEE-cC--CHHHHHHHHHh----CCe--EEecCCc-C--HHH---HH-HHHh
Confidence 37899999999999999998875 5 67777 32 33444443332 210 0111000 0 000 00 0000
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCC
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaK 204 (334)
...++|++|||+|.-...+.+-.+++.+.+
T Consensus 232 ------~~~~~dvvid~~~~~~~~~~~~~~l~~~g~ 261 (344)
T cd08284 232 ------EGRGADVVLEAVGGAAALDLAFDLVRPGGV 261 (344)
T ss_pred ------CCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 123789999999864445566667766653
No 338
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=50.45 E-value=22 Score=36.58 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
-+|+|.|+|.||+.+++.+...+ .+++.+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999998775 565554
No 339
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=50.20 E-value=23 Score=33.42 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.7
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~ 32 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVVILDN 32 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC-CeEEEEec
Confidence 899999 9999999999998874 78877753
No 340
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=50.14 E-value=67 Score=30.01 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=53.9
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| .|.+|+.+++++...+..+++++.. +.+..-++-+ +|- + ..++.+. .. . +..
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~---~~~~~~~~~~----~g~---~--------~~~~~~~-~~-~-~~i 210 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVIATAS---RPESIAWVKE----LGA---D--------HVINHHQ-DL-A-EQL 210 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCcEEEEEcC---ChhhHHHHHh----cCC---c--------EEEeCCc-cH-H-HHH
Confidence 789999 7999999999888775477777644 2333333322 221 0 1122111 00 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
..... .++|++++|+|.-...+.+-.+++.+.+-+.++
T Consensus 211 ~~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 211 EALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred HhhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence 11122 379999999986445666667777666444444
No 341
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.13 E-value=66 Score=32.42 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=24.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
-|.|.|.|.+|+.++|.|.+++ .+ |.+.|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~-v~~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IP-FAVMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-Ce-EEEEeC
Confidence 5899999999999999999886 55 445663
No 342
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=49.93 E-value=76 Score=31.55 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=53.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCC-C-ceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEecc
Q 019933 91 KVGING-FGRIGRLVLRVAAFRD-D-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~-d-~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~ 167 (334)
+|.|+| .|.||...++.+.... . ..++++ |. +.+.+..+.++ +|. ... ..+-....++-+...-+.+
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~-~~--~~~r~~~a~~~---~~~-~~~--~~Ga~~~~i~~~~~~~~~~- 247 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT-DV--NDERLARAQRL---FPP-EAA--SRGIELLYVNPATIDDLHA- 247 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEE-cC--CHHHHHHHHHh---ccc-ccc--ccCceEEEECCCccccHHH-
Confidence 789998 8999999998887653 1 245555 32 33333333221 000 000 0000001122110000000
Q ss_pred CCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 168 dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
...++ ....++|+|||++|.-.+.+.+-.+++.+-+.+++..
T Consensus 248 ~v~~~-t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 248 TLMEL-TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHH-hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 00001 0223799999999876666667777775555555544
No 343
>PRK05442 malate dehydrogenase; Provisional
Probab=49.65 E-value=28 Score=34.44 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.7
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFR 111 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~ 111 (334)
.||+|.|- |.||..++-.+..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh
Confidence 59999996 99999988777654
No 344
>PLN02206 UDP-glucuronate decarboxylase
Probab=49.54 E-value=21 Score=36.50 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 5899999 9999999999999885 78888753
No 345
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=49.51 E-value=71 Score=30.09 Aligned_cols=139 Identities=21% Similarity=0.290 Sum_probs=71.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
.|.|+|.|.+|+.+++++...+ +.++.+... .+.+...++-+| |- . .+ +.+.-.. . +...
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G-~~v~~~~~~-~~~~~~~~~~~~----g~-~-~~----------~~~~~~~-~-~~l~ 226 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG-ATVVVVGTE-KDEVRLDVAKEL----GA-D-AV----------NGGEEDL-A-ELVN 226 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CEEEEECCC-CCHHHHHHHHHh----CC-c-cc----------CCCcCCH-H-HHHH
Confidence 6788999999999999998875 777665221 233333333222 21 0 00 1000000 0 0000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCccccCCCCCEEecCCchhhhHHHHHHH
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKV 250 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPvlKv 250 (334)
.+ ....++|+++||.|.-...+....+++.+.+-+.+.... +.+ +...+.+ .+.....|..+-.++...+.-+++.
T Consensus 227 ~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~-~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~ 302 (306)
T cd08258 227 EI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-PLA-ASIDVER-IIQKELSVIGSRSSTPASWETALRL 302 (306)
T ss_pred HH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-CCC-cccCHHH-HhhcCcEEEEEecCchHhHHHHHHH
Confidence 00 122368999999975444455667777666444454443 111 1111111 1222345666666677777777777
Q ss_pred Hhh
Q 019933 251 VHE 253 (334)
Q Consensus 251 L~d 253 (334)
+++
T Consensus 303 ~~~ 305 (306)
T cd08258 303 LAS 305 (306)
T ss_pred Hhc
Confidence 664
No 346
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=49.29 E-value=19 Score=34.56 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 92 VGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 92 VgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
|+|.|.|.+|..+...+..++-.+|+-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 6899999999998887776541254444
No 347
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.25 E-value=1e+02 Score=29.43 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAI 119 (334)
-+|.|+|.|.||..+++++...+ .+ ++++
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~ 197 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG-AGRIIAV 197 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37899999999999999887765 54 4444
No 348
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=48.97 E-value=18 Score=37.64 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhh
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLl 133 (334)
+|||+|+|++|+.+.+.+.+++ ++|+..|. +.+...-+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~dr---t~~~~~~l~ 39 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNR---TPEKTDEFL 39 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeC---CHHHHHHHH
Confidence 4899999999999999998875 78777664 455444444
No 349
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=48.92 E-value=7.7 Score=35.36 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=21.1
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
..||.|.|.|-+|..+++.|...+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998765
No 350
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=48.88 E-value=24 Score=33.17 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=22.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
|||+|.|.|.||..+...|.+.+ .+|..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEE
Confidence 38999999999999999888764 444444
No 351
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=48.82 E-value=1.6e+02 Score=27.74 Aligned_cols=93 Identities=24% Similarity=0.244 Sum_probs=50.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|-+|+.+++++...+ + .++++.. +.+....+-+ +|. . ..++.+...+ +..
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~---s~~~~~~~~~----~g~-~----------~vi~~~~~~~-~~~-- 225 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAG-AAEIVATDL---ADAPLAVARA----MGA-D----------ETVNLARDPL-AAY-- 225 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHH----cCC-C----------EEEcCCchhh-hhh--
Confidence 7889999999999998887764 5 5555532 2222222222 121 0 0111110001 100
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.+ ...++|+||+|+|.-...+..-.+++.+.+-+.+
T Consensus 226 --~~-~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 226 --AA-DKGDFDVVFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred --hc-cCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 00 1126899999998644456667788776644334
No 352
>PRK06046 alanine dehydrogenase; Validated
Probab=48.48 E-value=27 Score=34.22 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=28.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~ 122 (334)
.+|+|.|.|.+|+..++++...+.++.|.|-+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 589999999999999999886667999998885
No 353
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=48.15 E-value=69 Score=30.25 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|.|.|.+||.+++.+.+.+ .++..+|.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g-~~v~v~~R 148 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKAD-CNVIIANR 148 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 7899999999999999998875 57666664
No 354
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=48.13 E-value=80 Score=29.19 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.0
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|.|+| .|.+|+.+++.+...+ ..++++.
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~ 194 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALG-ARVIAVT 194 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CeEEEEe
Confidence 789999 7999999999998775 7766654
No 355
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=47.54 E-value=23 Score=36.21 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=28.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayL 132 (334)
+||+|.|+|.+|..+...+.+ . +++++++- +.+.+.-|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~---~~~~ve~l 44 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDV---NKKRILEL 44 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-C-CEEEEEeC---CHHHHHHH
Confidence 499999999999988887655 3 89888763 44444433
No 356
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=47.36 E-value=32 Score=31.18 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
++.|.|||.+||-+.+.|.... .. |.|-|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e 53 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLG-AR-VTVTE 53 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--E-EEEE-
T ss_pred EEEEeCCCcccHHHHHHHhhCC-CE-EEEEE
Confidence 7899999999999999998775 22 34555
No 357
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=46.72 E-value=6.4 Score=39.07 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=19.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~ 112 (334)
||.|.|.|-+|-.+++.|...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998764
No 358
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=46.54 E-value=48 Score=30.97 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.0
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|-|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred EEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 899999 9999999999999875 6776654
No 359
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=46.40 E-value=1.4e+02 Score=28.30 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
-+|.|+|.|.+|+.+++.+...+...++++
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~ 197 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMV 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 378899999999999998877764566665
No 360
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=46.24 E-value=25 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=25.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCC-CceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRD-DVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~-d~eiVAIND 121 (334)
||.|-| +|.||+.+++.|.+++ +.+|++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 578999 9999999999998764 478887753
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.11 E-value=30 Score=32.89 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.||+|.|.|.+|..+...+...+ .+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 48999999999999999887764 6655553
No 362
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.07 E-value=1.5e+02 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
.+|.|.|.|.+|+.+.|.|.+++ .++++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~ 34 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAY 34 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999998886 665544
No 363
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.83 E-value=29 Score=34.33 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
-||||+|.|.||+.+...+...+ ++|+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~ 36 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAW 36 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEE
Confidence 38999999999999998888774 786544
No 364
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.80 E-value=1.1e+02 Score=30.64 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=50.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEe-ccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS-KRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~-~~d 168 (334)
.||.|.|+|..|+..++.|..++ .++.+ .|......... .|. .| +.++. ..+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~~~~~~~~~----------------------~l~-~g--~~~~~~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV-IDTRITPPGLD----------------------KLP-EN--VERHTGSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcCCCCchhHH----------------------HHh-cC--CEEEeCCCC
Confidence 37999999999999999887765 56544 45311110000 110 02 11222 122
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
+..++ +.|+||-+.|.-.+.+......+.|++ |++
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 22221 468999999987776666667788884 454
No 365
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=45.31 E-value=36 Score=31.98 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.1
Q ss_pred EEEEcC-ChhHHHHHHHHHcCC
Q 019933 92 VGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 92 VgINGf-GrIGR~vlRal~~~~ 112 (334)
|+|.|- |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689998 999999999887765
No 366
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.28 E-value=33 Score=33.82 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.7
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGf-GrIGR~vlRal~~~~ 112 (334)
++||+|.|- |.||..+++.|..++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCc
Confidence 369999995 999999999988754
No 367
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=45.24 E-value=50 Score=35.68 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=0.0
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|-|-| .|.||..++|.+++.+-=+|+-...- |+-.|.++.+- +++..-..-.-.+-+.+|.
T Consensus 252 ~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~----E~~~~~i~~el-------------~~~~~~~~~~~~igdVrD~ 314 (588)
T COG1086 252 TVLVTGGGGSIGSELCRQILKFNPKEIILFSRD----EYKLYLIDMEL-------------REKFPELKLRFYIGDVRDR 314 (588)
T ss_pred EEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc----hHHHHHHHHHH-------------HhhCCCcceEEEecccccH
Q ss_pred CCCC--CCccCccEEEec------------------cCCCCCHHHHHHHHHcCCCEEEEeCCCCC-CCeEEee
Q 019933 170 AEIP--WGDYGVDYVVES------------------SGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVG 221 (334)
Q Consensus 170 ~~i~--W~~~gvDiVvEs------------------TG~f~t~e~a~~hl~aGaKkVIISaPs~D-~p~~V~G 221 (334)
+.+. ..+..+|+|+.+ |-.+-|..-+++.++.|+|++|.-..-+- .|+=|||
T Consensus 315 ~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 315 DRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhh
No 368
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=45.12 E-value=30 Score=33.49 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=27.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.||-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4899999 9999999999999885 78888843
No 369
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=45.06 E-value=2e+02 Score=27.06 Aligned_cols=95 Identities=24% Similarity=0.302 Sum_probs=52.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC-
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP- 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP- 169 (334)
+|-|+|.|.+|+.+++++.... ++++++.. +.+...++-+ +| .. . .++.+...+ . +..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~---s~~~~~~~~~----~g-~~---------~-v~~~~~~~~-~-~~l~ 220 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG-ARVIVVDI---DDERLEFARE----LG-AD---------D-TINVGDEDV-A-ARLR 220 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEECC---CHHHHHHHHH----hC-CC---------E-EecCcccCH-H-HHHH
Confidence 7889999999999999988775 77777743 3444444322 22 00 0 111110000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
...+ +.++|++++|.|.-...+.+..+++.+.+.+.+
T Consensus 221 ~~~~--~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 221 ELTD--GEGADVVIDATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HHhC--CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0111 236899999987544445556677766543333
No 370
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=45.03 E-value=62 Score=33.23 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=51.5
Q ss_pred eeEEEEcC----ChhHHHHHHHHHcCCCc--eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEE
Q 019933 90 TKVGINGF----GRIGRLVLRVAAFRDDV--DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKV 163 (334)
Q Consensus 90 ikVgINGf----GrIGR~vlRal~~~~d~--eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V 163 (334)
-+|+|+|. |.+|+.+++.+.+.+ | +|..||-- |+..+ |. .+
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~i~------------------G~--~~ 54 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGEIL------------------GV--KA 54 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCccC------------------Cc--cc
Confidence 47999995 889999999998765 5 67777741 12222 21 11
Q ss_pred EeccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 164 ~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
+ .+.+++| ..+|+++-+++.-...+..+...+.|+|.+||
T Consensus 55 ~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 Y--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred c--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1122332 25788888877766666666667778887654
No 371
>PRK08017 oxidoreductase; Provisional
Probab=44.70 E-value=36 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.133 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|-|.| .|.||+.+++.+.+++ .+++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 3689999 7999999999998875 6776664
No 372
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.68 E-value=47 Score=33.67 Aligned_cols=102 Identities=25% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCCCceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEE
Q 019933 85 RSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (334)
Q Consensus 85 ~~~M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~ 164 (334)
+..+--||.|.|-|.||-.....+...+--+|| |.|+...-=.+|.-|-. ++-. ....+. .+-
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VV-i~d~~~~Rle~Ak~~Ga---------~~~~------~~~~~~-~~~ 228 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVV-ITDLVANRLELAKKFGA---------TVTD------PSSHKS-SPQ 228 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEE-EeecCHHHHHHHHHhCC---------eEEe------eccccc-cHH
Confidence 445556899999999998777766554433433 44542111122222211 1100 000100 000
Q ss_pred eccCCCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCC
Q 019933 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (334)
Q Consensus 165 ~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGa 203 (334)
..++--+--.++...|++|||||.-.+.+.+-..++.|=
T Consensus 229 ~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 229 ELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred HHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCC
Confidence 000000001122348999999999999998877777544
No 373
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=44.61 E-value=62 Score=30.79 Aligned_cols=93 Identities=24% Similarity=0.242 Sum_probs=50.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|..+.+.+...+ . .++++.. +.+...++-++ |- + ..++.+.....+ . .
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~---~~~~~~~~~~~----g~---~--------~~~~~~~~~~~~-~-~ 236 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG-PANIIVVDI---DEAKLEAAKAA----GA---D--------VVVNGSDPDAAK-R-I 236 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHHh----CC---c--------EEecCCCccHHH-H-H
Confidence 7899999999999999888765 6 3444422 23333333222 10 0 112211111100 0 0
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkV 206 (334)
.. .+.+ ++|+|||++|.-...+.+-.++..+..-|
T Consensus 237 ~~-~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 237 IK-AAGG-GVDAVIDFVNNSATASLAFDILAKGGKLV 271 (350)
T ss_pred HH-HhCC-CCcEEEECCCCHHHHHHHHHHhhcCCeEE
Confidence 00 0223 79999999996555666777777665333
No 374
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=44.38 E-value=30 Score=31.79 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||.|.| .|.||+.+++.|.+++ .+++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeC
Confidence 578999 8999999999998874 6777664
No 375
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=44.23 E-value=22 Score=37.38 Aligned_cols=128 Identities=14% Similarity=0.227 Sum_probs=68.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhc-ccccccc-----CCCeEEEeCCCeEEECCEEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK-YDSTHGV-----FKGTINVVDDSTLEINGKLIKV 163 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlk-YDSthGk-----f~~~v~~e~~~~L~inGk~I~V 163 (334)
.+||++|+|.+|+.+.+.|.+++ ++|+.-|- +++...-+.+ ... .|. .....++.+ .| ..-.+-+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~NR---t~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~--~l--~~~dvIi 77 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG-FPISVYNR---TTSKVDETVERAKK-EGNLPLYGFKDPEDFVL--SI--QKPRSVI 77 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC-CeEEEECC---CHHHHHHHHHhhhh-cCCcccccCCCHHHHHh--cC--CCCCEEE
Confidence 48999999999999999998875 88777764 4443333322 000 021 000000000 00 0011111
Q ss_pred EeccCCCC--------CCCCccCccEEEeccCCC--CCHHHHHHHHHcCCCEEEEeCCC------C-CCCeEEeecCccc
Q 019933 164 FSKRDPAE--------IPWGDYGVDYVVESSGVF--TTIAKASAHMKGGAKKVVISAPS------A-DAPMFVVGVNEKT 226 (334)
Q Consensus 164 ~~~~dP~~--------i~W~~~gvDiVvEsTG~f--~t~e~a~~hl~aGaKkVIISaPs------~-D~p~~V~GVN~~~ 226 (334)
+.-.+.+. ++--+ .=|++||++-.. .+.+.++...+.|+ -.|.+|- + .-|++++|-+.+.
T Consensus 78 ~~v~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~a 154 (493)
T PLN02350 78 ILVKAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFEA 154 (493)
T ss_pred EECCCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHHH
Confidence 11122111 11111 238999997764 34455555556788 4678873 1 3568999988888
Q ss_pred cCC
Q 019933 227 YKP 229 (334)
Q Consensus 227 y~~ 229 (334)
|+.
T Consensus 155 ~~~ 157 (493)
T PLN02350 155 YKN 157 (493)
T ss_pred HHH
Confidence 764
No 376
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=43.96 E-value=57 Score=31.63 Aligned_cols=96 Identities=24% Similarity=0.316 Sum_probs=50.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEE-EEeccC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VFSKRD 168 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~-V~~~~d 168 (334)
+|.|+|-|.+|..+++.+...+ .. ++++.- +.+...++-++ |. . -.++.+... -+. +.
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~---~~~~~~~~~~~----g~-~----------~~v~~~~~~~~~~-~~ 245 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDI---NKDKFEKAKQL----GA-T----------ECINPRDQDKPIV-EV 245 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHHh----CC-C----------eecccccccchHH-HH
Confidence 7899999999999999888775 54 444431 33333343222 21 0 011110000 000 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHH-cCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMK-GGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~-aGaKkVII 208 (334)
..++. ..++|+|||++|.-...+.+-.+++ .+.+-+.+
T Consensus 246 l~~~~--~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 246 LTEMT--DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred HHHHh--CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 00111 1379999999986445566667777 66644333
No 377
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=43.91 E-value=8.3 Score=31.28 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=51.1
Q ss_pred hHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCCCCCCCccCc
Q 019933 100 IGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGV 179 (334)
Q Consensus 100 IGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~~i~W~~~gv 179 (334)
||...++++...+ .+|+++-. +.+.+.++-+ +| . + ..++.+.-.+ . ....++- ++.++
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~---~~~k~~~~~~----~G-a--~--------~~~~~~~~~~-~-~~i~~~~-~~~~~ 59 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDR---SEEKLELAKE----LG-A--D--------HVIDYSDDDF-V-EQIRELT-GGRGV 59 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEES---SHHHHHHHHH----TT-E--S--------EEEETTTSSH-H-HHHHHHT-TTSSE
T ss_pred hHHHHHHHHHHcC-CEEEEEEC---CHHHHHHHHh----hc-c--c--------cccccccccc-c-ccccccc-ccccc
Confidence 7888888888877 78777753 4555555543 22 0 0 0111000000 0 0001111 12489
Q ss_pred cEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC
Q 019933 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (334)
Q Consensus 180 DiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs 212 (334)
|+||||+|.-...+.+-..++.|.+-|++..+.
T Consensus 60 d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 60 DVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred eEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 999999997666677767777777666665554
No 378
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=43.84 E-value=56 Score=28.72 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|-|.| .|.||+.+++.+.+++ .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 5899999 9999999999998875 66666654
No 379
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.65 E-value=33 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|-|-| .|.||+.+++.|.++ ..+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 488999 999999999999987 488888875
No 380
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.63 E-value=33 Score=33.34 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~ 112 (334)
||+|.|.|.+|..++..+..++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 8999999999999999888775
No 381
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=43.19 E-value=56 Score=30.53 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=24.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-+|.|+| .|.+|+.+++.+...+ .+++++-.
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~G-~~v~~~~~ 173 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKALG-AKLIGTVG 173 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHcC-CEEEEEeC
Confidence 3788997 9999999998887775 77776643
No 382
>PRK07326 short chain dehydrogenase; Provisional
Probab=43.05 E-value=39 Score=29.90 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=25.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|.| .|.||+.+++.+.++ +.+|+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 4789999 999999999999887 47877775
No 383
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=42.84 E-value=33 Score=36.71 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=27.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+||-|-| .|-||+.+++.|.++.+.+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 4899999 9999999999999865589888864
No 384
>PTZ00325 malate dehydrogenase; Provisional
Probab=42.68 E-value=47 Score=32.92 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=43.9
Q ss_pred CccEEEeccCCCCCH-----HH-----------HHHHHHcCCCEEEE--eCCCCCCCeEEee---cCccccCCCCCEEec
Q 019933 178 GVDYVVESSGVFTTI-----AK-----------ASAHMKGGAKKVVI--SAPSADAPMFVVG---VNEKTYKPNMNIVSN 236 (334)
Q Consensus 178 gvDiVvEsTG~f~t~-----e~-----------a~~hl~aGaKkVII--SaPs~D~p~~V~G---VN~~~y~~~~~IVSn 236 (334)
|+|+||-+.|.-... +. .++-.+.|.+++|+ |+|. |.-+.+.. -....+. ..+++..
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv-dv~~~~~~~~~~~~sg~p-~~~viG~ 153 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV-NSTVPIAAETLKKAGVYD-PRKLFGV 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH-HHHHHHHHhhhhhccCCC-hhheeec
Confidence 899999999985441 11 11223467777665 5553 21111110 0111122 3577777
Q ss_pred CCchhhhHHHHHHHHhhhcCeeE
Q 019933 237 ASCTTNCLAPLAKVVHEEFGILE 259 (334)
Q Consensus 237 ASCTTncLAPvlKvL~d~fGI~~ 259 (334)
. +-=-+++-..|-+++++.-
T Consensus 154 g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 154 T---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred h---hHHHHHHHHHHHHHhCcCh
Confidence 3 3666788899999999874
No 385
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=42.45 E-value=34 Score=35.64 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC-CceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~-d~eiVAIN 120 (334)
|||+|.|.|.+|-.+.-.+.+++ +++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 59999999999998877777653 58888773
No 386
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=42.42 E-value=34 Score=34.73 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCc-eEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~-eiVAIND 121 (334)
.+|+|.|.|.||+.+++.+...+ + +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 48999999999999999998764 5 5555554
No 387
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=42.38 E-value=48 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAIND 121 (334)
-||.|.|.|-+||.++..|.+.+ +. |.-+|.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 48999999999999999999885 54 666775
No 388
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=42.21 E-value=35 Score=31.70 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=25.5
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 789999 8999999999998875 67777754
No 389
>PRK07877 hypothetical protein; Provisional
Probab=42.09 E-value=10 Score=41.69 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=52.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC-CCCHHHHhhhhccccccccCCCeEEEeCCCeEEECC-EEEEEEec
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP-FIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSK 166 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~-~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inG-k~I~V~~~ 166 (334)
.-||+|.|.| +|-.++..|...+-+.-..|-|. ..++..+-..+--.+.-|+.+-++-. ..-..+|- -.|..+.+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~--~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAA--RRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHH--HHHHHHCCCCEEEEEec
Confidence 3589999999 89999888775541111112221 12222222221111223433221111 00111231 23444443
Q ss_pred c-CCCCCCCCccCccEEEeccCCCCCHHHHHH-HHHcCC
Q 019933 167 R-DPAEIPWGDYGVDYVVESSGVFTTIAKASA-HMKGGA 203 (334)
Q Consensus 167 ~-dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~-hl~aGa 203 (334)
. ++++++=--.++|+||||+..|.++-.... -.+.|.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 2 333332001379999999999987754432 234444
No 390
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=41.52 E-value=23 Score=33.46 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.5
Q ss_pred eEEEEcCChhHHHHHHHHHcCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~ 112 (334)
||.|.|.|-+|-.+++.|...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~G 22 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG 22 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999987664
No 391
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=41.44 E-value=49 Score=34.29 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=31.5
Q ss_pred cCCcccccccCCccccCCCCCCceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 67 IQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~M~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
+||.+...+...... ...+|+.+|.|+|-|..|-.+...|..++ ++++-|
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~vi 52 (547)
T PRK08132 3 YQTPKFPYRPHADQD--ADDPARHPVVVVGAGPVGLALAIDLAQQG-VPVVLL 52 (547)
T ss_pred CcccCccCCCCcccc--CCCCCcCCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 455555544432222 22345679999999999998887776653 555444
No 392
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=41.33 E-value=2.3e+02 Score=26.85 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=22.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAI 119 (334)
+|.|+|.|.+|+.+++.+...+ . .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G-~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG-ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 7889999999999999888765 5 46666
No 393
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.04 E-value=48 Score=32.69 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.8
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~ 112 (334)
.||+|.|- |+||..++..|..++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999996 999999998887654
No 394
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=40.95 E-value=94 Score=31.16 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=30.7
Q ss_pred CccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC-CCCCCeEEeecC
Q 019933 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP-SADAPMFVVGVN 223 (334)
Q Consensus 178 gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP-s~D~p~~V~GVN 223 (334)
..|++|.....-...+-...|++.|| +|+.+. .+|..+.|-.+|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~ 274 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVG 274 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCC
Confidence 45666666665666677889999999 999886 356545555555
No 395
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=40.90 E-value=1.6e+02 Score=28.68 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|.|.| .|.||..+++++...+ ++++++-
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~G-~~vv~~~ 225 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAAG-ANPVAVV 225 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 789999 5999999998887764 7766663
No 396
>PRK05586 biotin carboxylase; Validated
Probab=40.88 E-value=35 Score=34.56 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=27.7
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|..||+|.|-|.+|+.+++++.+.+ +++|++-
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG-~~~v~v~ 32 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMG-IETVAVY 32 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CcEEEEc
Confidence 3359999999999999999999885 8888883
No 397
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=40.56 E-value=15 Score=37.00 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=53.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccc-cccccCCCeEEEe----CCCeEEECCEEEE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYD-STHGVFKGTINVV----DDSTLEINGKLIK 162 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYD-SthGkf~~~v~~e----~~~~L~inGk~I~ 162 (334)
..||.|.|.|-+|..+++.|...+ + +|.-+.+-..++..+-.-+-|+ ..-|+...+.-.+ -+..+.+....-.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 458999999999999999998765 4 3333332223343333322222 1123221110000 0011222211112
Q ss_pred EEeccCCCCCCCCccCccEEEeccCCCCCHHHHHH-HHHcCCC
Q 019933 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASA-HMKGGAK 204 (334)
Q Consensus 163 V~~~~dP~~i~W~~~gvDiVvEsTG~f~t~e~a~~-hl~aGaK 204 (334)
+ +++++.---.++|+||+|+..|.++..... ..+.|..
T Consensus 120 i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 120 L----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred c----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 2 121211001368999999999988754332 2345553
No 398
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=40.36 E-value=62 Score=30.55 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=51.8
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
+|.|+| -|.+|..+++.+...+ . +++++.. +.+...++.+ .+|- + . .++.+...+ . +.
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~---s~~~~~~~~~---~lGa---~-------~-vi~~~~~~~-~-~~ 216 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLG-CSRVVGICG---SDEKCQLLKS---ELGF---D-------A-AINYKTDNV-A-ER 216 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHH---hcCC---c-------E-EEECCCCCH-H-HH
Confidence 799999 5999999999888775 6 6777643 2333333321 1221 0 0 111100000 0 00
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
..++. ..++|+||||+|.-. .+.+-.+++.|.+-|.+
T Consensus 217 i~~~~--~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 217 LRELC--PEGVDVYFDNVGGEI-SDTVISQMNENSHIILC 253 (345)
T ss_pred HHHHC--CCCceEEEECCCcHH-HHHHHHHhccCCEEEEE
Confidence 01111 137999999999743 45566677777654444
No 399
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=40.12 E-value=15 Score=38.19 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.5
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHcC
Q 019933 89 NTKVGINGF-GRIGRLVLRVAAFR 111 (334)
Q Consensus 89 ~ikVgINGf-GrIGR~vlRal~~~ 111 (334)
++||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999997 99999999888766
No 400
>PRK06153 hypothetical protein; Provisional
Probab=40.03 E-value=15 Score=37.68 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||+|.|.|-+|-.++..|...+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~G 199 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTP 199 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcC
Confidence 48999999999999999998765
No 401
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=39.96 E-value=43 Score=33.18 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|||.|-|..||.+.+++.+.+ ++++.+.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG-~~v~~~d 32 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG-YKVIVLD 32 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 48999999999999999988875 7776663
No 402
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.51 E-value=69 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=24.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCC-CceEEEEeCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDP 122 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~-d~eiVAIND~ 122 (334)
||.|.|-|.||-.+...+.+.. ++.++.-++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 6899999999999999998765 3444444443
No 403
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=39.47 E-value=1.9e+02 Score=28.35 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=22.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
+|.|+| .|.||..+++++...+ ..++.+
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G-~~vi~~ 220 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGG-GNPVAV 220 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC-CeEEEE
Confidence 789999 5999999998887765 665555
No 404
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.45 E-value=1.3e+02 Score=27.57 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=51.1
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| .|.+|+.+++++...+ ++++++.. +.+..-++.++ |- + .+. +... .+ . ++.
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~~----g~---------~-~~~-~~~~-~~-~-~~i 202 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALG-ATVTATTR---SPERAALLKEL----GA---------D-EVV-IDDG-AI-A-EQL 202 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHhc----CC---------c-EEE-ecCc-cH-H-HHH
Confidence 789999 6999999999998875 77777654 23444343321 10 0 111 1000 00 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKK 205 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKk 205 (334)
. .+ ..++|+|++|+|.. ..+.+..++..+.+-
T Consensus 203 ~--~~-~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~ 234 (320)
T cd08243 203 R--AA-PGGFDKVLELVGTA-TLKDSLRHLRPGGIV 234 (320)
T ss_pred H--Hh-CCCceEEEECCChH-HHHHHHHHhccCCEE
Confidence 1 12 24799999999963 455566777766543
No 405
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.94 E-value=2e+02 Score=27.28 Aligned_cols=29 Identities=34% Similarity=0.308 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAI 119 (334)
-+|.|+|.|.+|..+++.+...+ .+ ++++
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~ 193 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG-ATKVVVT 193 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 37889999999999999888765 55 5454
No 406
>PLN02214 cinnamoyl-CoA reductase
Probab=38.89 E-value=48 Score=32.07 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=25.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|.|-| .|.||+.+++.|.+++ .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 4899999 8999999999999875 77777643
No 407
>PLN00198 anthocyanidin reductase; Provisional
Probab=38.63 E-value=46 Score=31.68 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
.+|.|-| .|-||+.+++.|.+++ .+|+++
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~ 39 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKG-YAVNTT 39 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 4899999 9999999999999875 677655
No 408
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=38.40 E-value=15 Score=36.49 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~ 112 (334)
..||.|.|.|-+|..+++.|...+
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 459999999999999999987654
No 409
>PRK07023 short chain dehydrogenase; Provisional
Probab=38.37 E-value=47 Score=29.76 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
++|-|.| .|.||+.+.+.+.+++ .+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEE
Confidence 4899999 9999999999998875 676555
No 410
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=38.25 E-value=2e+02 Score=26.75 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| .|.+|+.+++.+...+ .+++++.. +.+...++-+ +|. . .+ ++...... . +..
T Consensus 142 ~vlI~ga~g~ig~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~-~-~v---------~~~~~~~~-~-~~~ 200 (329)
T cd08250 142 TVLVTAAAGGTGQFAVQLAKLAG-CHVIGTCS---SDEKAEFLKS----LGC-D-RP---------INYKTEDL-G-EVL 200 (329)
T ss_pred EEEEEeCccHHHHHHHHHHHHcC-CeEEEEeC---cHHHHHHHHH----cCC-c-eE---------EeCCCccH-H-HHH
Confidence 789999 8999999988887764 77766644 2333333322 221 0 00 11100000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISa 210 (334)
... . +.++|+||+|+|. ...+.+..++..+.+-|.++.
T Consensus 201 ~~~-~-~~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v~~g~ 238 (329)
T cd08250 201 KKE-Y-PKGVDVVYESVGG-EMFDTCVDNLALKGRLIVIGF 238 (329)
T ss_pred HHh-c-CCCCeEEEECCcH-HHHHHHHHHhccCCeEEEEec
Confidence 001 1 2379999999996 344556667766664444543
No 411
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=38.14 E-value=43 Score=31.99 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=23.7
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||-|-| .|.||+.+++.|.+++.-.++++.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 899999 999999999999987533344443
No 412
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=38.13 E-value=9.8 Score=39.79 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|+|+|-|.+|-..+..|...+ .+++.+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G-~~V~v~e 167 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMG-HAVTIFE 167 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 48999999999999998887764 6755553
No 413
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=38.09 E-value=53 Score=28.83 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.9
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 92 VgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|-|.| +|-||+.+++.|.+++ .+++++..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccc
Confidence 56889 9999999999999886 56666655
No 414
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.03 E-value=78 Score=28.40 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.3
Q ss_pred eeEEEEcCChh-HHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRI-GRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrI-GR~vlRal~~~~d~eiVAIND 121 (334)
-||.|.|.|.+ |+.+++.|.++. ..+..+|.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 48999999985 998999998875 56666775
No 415
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=37.96 E-value=1.7e+02 Score=27.58 Aligned_cols=135 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.+|+.+++.+...+ .+ ++++.. +.+....+-+ +|- + -.++.+.... . ++.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~---~~~~~~~~~~----~ga---~--------~v~~~~~~~~-~-~~i 229 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG-AERIIAMSR---HEDRQALARE----FGA---T--------DIVAERGEEA-V-ARV 229 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHHHHHHH----cCC---c--------eEecCCcccH-H-HHH
Confidence 7888999999999998888775 65 556543 2222211111 121 0 1111111000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCCCCCCCeEEeecCc-cccCCCCCEEecCCchhhhHHHHH
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNE-KTYKPNMNIVSNASCTTNCLAPLA 248 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs~D~p~~V~GVN~-~~y~~~~~IVSnASCTTncLAPvl 248 (334)
..+. ...++|+++||+|.-...+.+..++..+..-++++.+.... .+|. ..+.....+.....+.-..+..++
T Consensus 230 ~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (345)
T cd08287 230 RELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGV-----ELDVRELFFRNVGLAGGPAPVRRYLPELL 303 (345)
T ss_pred HHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCC-----ccCHHHHHhcceEEEEecCCcHHHHHHHH
Confidence 0111 12368999999986556667777777665434344332111 1121 112223344444444444555555
Q ss_pred HHHh
Q 019933 249 KVVH 252 (334)
Q Consensus 249 KvL~ 252 (334)
+.+.
T Consensus 304 ~~~~ 307 (345)
T cd08287 304 DDVL 307 (345)
T ss_pred HHHH
Confidence 5443
No 416
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=37.93 E-value=39 Score=28.25 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=28.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|--||-|.|=|.|+..++|.+.+.+ ++.|+||.
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~G-i~tv~v~s 33 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELG-IETVAVNS 33 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC-CcceeccC
Confidence 4458999999999999999999985 99999986
No 417
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=37.42 E-value=37 Score=35.31 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=23.5
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
|..+|||.|+|-||--+.-+...+ .++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 347999999999998765555444 4888776
No 418
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=37.40 E-value=44 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|+|.|||.-|+.....|.+++ ++|+--+.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 38999999999999988888885 77654443
No 419
>PLN02858 fructose-bisphosphate aldolase
Probab=37.38 E-value=41 Score=39.70 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=27.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|..+||++|+|.+|..+.+.|...+ +++.+.|-
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G-~~V~v~dr 355 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSN-FSVCGYDV 355 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4468999999999999999998765 78766653
No 420
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.16 E-value=55 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=25.5
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|...|-|.| .|.||+.+++.|.+++ .+++.+.
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~ 33 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG-FDLAIND 33 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 333677889 9999999999999875 6777764
No 421
>PRK08618 ornithine cyclodeaminase; Validated
Probab=36.91 E-value=70 Score=31.25 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=52.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhc-cccccccCCCeEEEeCCCeEEECCEEEEEEeccC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlk-YDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~d 168 (334)
-+|+|.|.|.+||..++++.....++-|.|-+. +++....+.+ +...+ . -.+..+ .+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~~~~~~~~---~---------------~~~~~~--~~ 185 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFAQEIQSKF---N---------------TEIYVV--NS 185 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHHHHHHHhc---C---------------CcEEEe--CC
Confidence 479999999999999988765445777777663 4444333321 00000 0 011111 12
Q ss_pred CCCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 169 P~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
.++.- .++|+|+-||+.... ... ..++.|+ .|++
T Consensus 186 ~~~~~---~~aDiVi~aT~s~~p-~i~-~~l~~G~--hV~~ 219 (325)
T PRK08618 186 ADEAI---EEADIIVTVTNAKTP-VFS-EKLKKGV--HINA 219 (325)
T ss_pred HHHHH---hcCCEEEEccCCCCc-chH-HhcCCCc--EEEe
Confidence 11110 268999999997743 333 6778887 5543
No 422
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=36.87 E-value=46 Score=31.82 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=24.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.||-|-| +|-||+.+++.|.+++ .+++.+-+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 3899999 9999999999999875 45444433
No 423
>PLN02583 cinnamoyl-CoA reductase
Probab=36.73 E-value=50 Score=31.15 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|-|-| .|.||+.+++.|.+++ .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence 789999 9999999999999875 78877643
No 424
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.68 E-value=56 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.021 Sum_probs=24.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-||-|.|-|.+|...++.|.+.+ .+|+-|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 38999999999999999998864 5655554
No 425
>PLN00203 glutamyl-tRNA reductase
Probab=36.18 E-value=41 Score=35.61 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|+|.|.|.+|+.+++.|..++--+|+.+|.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 48999999999999999998875224666664
No 426
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=36.17 E-value=1.4e+02 Score=28.32 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=51.6
Q ss_pred EEEeccCCCCCHHHHHHHHHcCCCEEEEeCCC-CC----------C-CeEEeecCccccCCCCCEEecCCchhhhHH--H
Q 019933 181 YVVESSGVFTTIAKASAHMKGGAKKVVISAPS-AD----------A-PMFVVGVNEKTYKPNMNIVSNASCTTNCLA--P 246 (334)
Q Consensus 181 iVvEsTG~f~t~e~a~~hl~aGaKkVIISaPs-~D----------~-p~~V~GVN~~~y~~~~~IVSnASCTTncLA--P 246 (334)
+-++--|..++.|.++..++.||.||||..-. .+ - --+|.++.... +++...+.....+...+- -
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~-~g~~~~v~~~Gw~~~~~~~~~ 153 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLE-DGEWHTLGNRGWSDGGGDLEV 153 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEec-CCceEEEECCCeecCCCcHHH
Confidence 34566789999999999999999999984321 11 0 12455554321 222234444333333332 2
Q ss_pred HHHHHhhhcCeeEEEEEEEeec
Q 019933 247 LAKVVHEEFGILEGLMTTVHAT 268 (334)
Q Consensus 247 vlKvL~d~fGI~~g~mTTVHA~ 268 (334)
+++-+ +.+|..+.++|.+..-
T Consensus 154 ~~~~~-~~~g~~~ii~tdI~~d 174 (243)
T TIGR01919 154 LERLL-DSGGCSRVVVTDSKKD 174 (243)
T ss_pred HHHHH-HhCCCCEEEEEecCCc
Confidence 34444 6789999999988543
No 427
>PRK10537 voltage-gated potassium channel; Provisional
Probab=36.11 E-value=57 Score=33.22 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-.|-|.|+|++|+.+++.|.+++ .++|.|-+
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g-~~vvVId~ 271 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG-QAVTVIVP 271 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 35889999999999999988764 67766643
No 428
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=35.87 E-value=2.9e+02 Score=26.99 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAI 119 (334)
+|.|+|-|.+|..+++++...+ . .++++
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~ 234 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAG-ASKVIAF 234 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE
Confidence 7899999999999999988876 5 46555
No 429
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=35.76 E-value=48 Score=34.78 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=28.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~a 130 (334)
.||||+|.|.+|+-+.+.+...+ ++|+..+- +++.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~d~---~~e~l~ 42 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLYDI---RAEALA 42 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC-CeEEEEeC---CHHHHH
Confidence 38999999999999999888774 88766653 454443
No 430
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=35.63 E-value=41 Score=30.65 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.6
Q ss_pred EEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 93 GING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 93 gING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-|-| .|.||+.+++.|.+++ .+|++++.
T Consensus 2 lVtGatG~iG~~l~~~L~~~g-~~V~~~~r 30 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDG-HEVTILTR 30 (292)
T ss_pred EEEcccchhhHHHHHHHHHcC-CEEEEEeC
Confidence 4778 9999999999998875 88888765
No 431
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=35.45 E-value=63 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=25.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
.+|.|-| .|.||+.+++.+.+++ .+|+++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 4789999 9999999999998875 67776643
No 432
>PRK08328 hypothetical protein; Provisional
Probab=34.98 E-value=24 Score=32.98 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.4
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||.|.|.|-+|..+++.|...+
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999987764
No 433
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.74 E-value=57 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.0
Q ss_pred eeEEEEcC-ChhHHHHHHHHHcCC
Q 019933 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~~~ 112 (334)
+||+|.|. |.||..++-.+..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999997 999999988887665
No 434
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=34.74 E-value=32 Score=35.12 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHcCC
Q 019933 89 NTKVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 89 ~ikVgINGf-GrIGR~vlRal~~~~ 112 (334)
++||+|.|. |+||..++-.+..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 479999997 999999998887664
No 435
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=34.68 E-value=62 Score=28.93 Aligned_cols=31 Identities=32% Similarity=0.169 Sum_probs=24.9
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
|+.+|-|.| .|-||+.+++.+.+++ .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 445899999 9999999999998875 666543
No 436
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=34.67 E-value=51 Score=34.52 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-||||+|.|.+|+-+.+.+...+ ++|+..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEe
Confidence 47999999999999999888764 8876654
No 437
>PRK15076 alpha-galactosidase; Provisional
Probab=34.51 E-value=42 Score=34.52 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=11.6
Q ss_pred eeEEEEcCChhHH
Q 019933 90 TKVGINGFGRIGR 102 (334)
Q Consensus 90 ikVgINGfGrIGR 102 (334)
+||+|+|-|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5999999999984
No 438
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.30 E-value=60 Score=29.29 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.2
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|-|.| .|.||+.+.+.+.+++ .+|+.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 31 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQG-HKVIATG 31 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCC-CEEEEEE
Confidence 788999 9999999999998875 6766654
No 439
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=34.30 E-value=59 Score=31.64 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
+||+|.|.|.+|..++..+..++..+++-+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv 31 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLL 31 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEE
Confidence 399999999999999998887652354443
No 440
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=34.04 E-value=3.4e+02 Score=24.96 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|+| -|.+|..+++++...+ .+++++..
T Consensus 145 ~vlI~g~~~~~g~~~~~la~~~g-~~v~~~~~ 175 (324)
T cd08244 145 VVLVTAAAGGLGSLLVQLAKAAG-ATVVGAAG 175 (324)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CEEEEEeC
Confidence 789999 8999999999888775 77766643
No 441
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=33.92 E-value=50 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHcC-CCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFR-DDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~-~d~eiVAIND 121 (334)
+||.|-| +|.||+.+++.|.++ .+.+|+++..
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4899999 999999999999886 3588888754
No 442
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=33.82 E-value=94 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|-|-| .|.||+.+++.|.+++ .+|+++.+
T Consensus 7 ~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 7 LVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 899999 9999999999999875 67776543
No 443
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=33.78 E-value=55 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.245 Sum_probs=28.1
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|+-||.|.|-|.++..+++++.+.+ +++|++.
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG-~~vv~~~ 32 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELG-IKTVAVH 32 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcC-CeEEEEE
Confidence 3359999999999999999999885 9999984
No 444
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=33.38 E-value=63 Score=30.74 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-+|.|.|.|.+||.++++|.+.+--+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 37999999999999999998775235555554
No 445
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=33.19 E-value=57 Score=30.03 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||-|.| .|.||+.+++.|.+++ .+++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEe
Confidence 577999 9999999999998875 6766663
No 446
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=33.13 E-value=2.4e+02 Score=26.49 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
-+|.|+| .|.+|..+++.+...+ .+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG-AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEEeC
Confidence 3789999 7999999999887765 67777654
No 447
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=32.74 E-value=2.8e+02 Score=26.37 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=53.7
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+| .|.+|..+++++...+ +.++++..+ +...++-+ +|- ... ++.+.... . +..
T Consensus 157 ~vlI~ga~g~vg~~~~~~a~~~G-~~v~~~~~~----~~~~~~~~----~g~-~~v----------~~~~~~~~-~-~~l 214 (339)
T cd08249 157 PVLIWGGSSSVGTLAIQLAKLAG-YKVITTASP----KNFDLVKS----LGA-DAV----------FDYHDPDV-V-EDI 214 (339)
T ss_pred EEEEEcChhHHHHHHHHHHHHcC-CeEEEEECc----ccHHHHHh----cCC-CEE----------EECCCchH-H-HHH
Confidence 789999 6999999999988875 777666432 22223311 221 101 11100000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHc--CCCEEEEeC
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKG--GAKKVVISA 210 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~a--GaKkVIISa 210 (334)
.++. ..++|+|||++|.-...+.+..+++. |.+-|.+..
T Consensus 215 ~~~~--~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~ 255 (339)
T cd08249 215 RAAT--GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLP 255 (339)
T ss_pred HHhc--CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecC
Confidence 1111 23689999999964456667778877 665555543
No 448
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.72 E-value=67 Score=31.54 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.7
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
+||+|.|.|.+|..+...|.+..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC
Confidence 59999999999999999888765
No 449
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=32.63 E-value=1.5e+02 Score=28.62 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=52.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|.|.+|..+++.+...+ .. ++++.. +.+....+-+ +|- . -.++.+.... . ++.
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~---~~~~~~~~~~----~g~-~----------~vv~~~~~~~-~-~~l 243 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAG-ASRIIAVDP---VPEKLELARR----FGA-T----------HTVNASEDDA-V-EAV 243 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC---CHHHHHHHHH----hCC-e----------EEeCCCCccH-H-HHH
Confidence 7899999999999999888765 65 666643 2333333321 221 0 0111110000 0 000
Q ss_pred CCCCCC-ccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEe
Q 019933 170 AEIPWG-DYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (334)
Q Consensus 170 ~~i~W~-~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIIS 209 (334)
..+. ..++|++++|+|.-...+.+-.+++.+.+-+.++
T Consensus 244 --~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 244 --RDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred --HHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 0111 2368999999986445566667777766544443
No 450
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=32.59 E-value=89 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=23.8
Q ss_pred CCceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 87 ~M~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
..+.+|.|+|-|..|-.+...|..++ +++.-+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G-~~v~v~ 47 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG-LRIALI 47 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC-CEEEEE
Confidence 33579999999999998888886653 554433
No 451
>PRK08267 short chain dehydrogenase; Provisional
Probab=32.42 E-value=72 Score=28.84 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=24.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
++-|.| .|.||+.+++.+.+++ ..|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG-WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 688999 9999999999998875 6766664
No 452
>PRK06924 short chain dehydrogenase; Provisional
Probab=32.40 E-value=70 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.3
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|-|.| .|.||+.+++.+.+++ .+|+.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g-~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG-THVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC-CEEEEEe
Confidence 788999 9999999999998875 6766654
No 453
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=32.37 E-value=84 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.0
Q ss_pred EEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 92 VgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|-|-| .|-||+.+++.|.+++ .+++++-|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEec
Confidence 46888 9999999999999875 66666544
No 454
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=32.35 E-value=2e+02 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|.|+| .|.+|+.+++.+...+ ++++++..
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~ 169 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALG-ATVIGTVS 169 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcC-CEEEEEcC
Confidence 789999 8999999998887765 77776643
No 455
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=32.22 E-value=72 Score=27.48 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=25.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
++.|.|.|.-|+.+++.|.++ .+++|+.=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEc
Confidence 478999999999999998765 589988766
No 456
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=31.99 E-value=64 Score=30.86 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=25.6
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
+|-|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEec
Confidence 788999 9999999999999875 78887743
No 457
>PRK05993 short chain dehydrogenase; Provisional
Probab=31.81 E-value=78 Score=29.27 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=25.5
Q ss_pred CceeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 88 M~ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
|..+|-|.| .|.||+.+++.+.+++ .+|+.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG-WRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 334788999 8999999999998875 7777664
No 458
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.76 E-value=59 Score=32.93 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|||.|.|+|+.|+.++|.|. ++ .++ .+.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G-~~V-~~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF-GGV-DIFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC-CeE-EEEc
Confidence 38999999999999999998 65 554 3444
No 459
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=31.48 E-value=1.1e+02 Score=28.31 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=27.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhh
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLl 133 (334)
-+|.|+| -|.+|+.+++.+...+ ..++.+-+ +.+...++.
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~ 182 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYG-AATIITTS---SEEKVDFCK 182 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHH
Confidence 3799999 8999999999988775 66544432 344444443
No 460
>PRK12320 hypothetical protein; Provisional
Probab=31.27 E-value=62 Score=35.61 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=26.0
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeC
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND 121 (334)
||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 899999 9999999999998875 78777754
No 461
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.07 E-value=1.7e+02 Score=28.45 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=19.0
Q ss_pred eeEEEEcCCh-hHHHHHHHHHcCC
Q 019933 90 TKVGINGFGR-IGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGr-IGR~vlRal~~~~ 112 (334)
.+|.|.|.|. +||-+..+|.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 3899999887 9999988887765
No 462
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=30.95 E-value=76 Score=31.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHcCC
Q 019933 91 KVGINGF-GRIGRLVLRVAAFRD 112 (334)
Q Consensus 91 kVgINGf-GrIGR~vlRal~~~~ 112 (334)
||+|.|. |.||..++-.|..++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999997 999999988887765
No 463
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=30.55 E-value=17 Score=39.68 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.9
Q ss_pred eeEEEEcCChhHHHHHHHHHcCC
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRD 112 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~ 112 (334)
.||.|.|.|-+|-.++|.|...+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC
Confidence 68999999999999999998765
No 464
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=30.29 E-value=83 Score=26.30 Aligned_cols=29 Identities=34% Similarity=0.308 Sum_probs=22.5
Q ss_pred EEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 92 VgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|+|.|.|.||.++.-.|.+. ..++.-+-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEc
Confidence 78999999999998888774 366555544
No 465
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.18 E-value=83 Score=27.79 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
.+|-|.| .|.||+.+++.+.+++ .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 4789999 9999999999988774 777666
No 466
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=30.13 E-value=1.9e+02 Score=32.27 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEeCCCCC--CCeEEeecCccccCCCCCEEecCCchhhhHHHHHHHHhhhcCeeEEEEEE
Q 019933 187 GVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTT 264 (334)
Q Consensus 187 G~f~t~e~a~~hl~aGaKkVIISaPs~D--~p~~V~GVN~~~y~~~~~IVSnASCTTncLAPvlKvL~d~fGI~~g~mTT 264 (334)
..+.+++.|++|.+.|+ .|.--.|.| .|=+|+- ++.+-+|.-..-.+..|++.|-=-++.+..
T Consensus 595 pq~~t~~qA~~~~~~G~--~iwewas~d~gepdvV~A-------------~~Gd~~t~e~laAa~~L~e~~p~l~vRvVn 659 (793)
T COG3957 595 PQWLTMEQAEKHCTDGA--GIWEWASGDDGEPDVVMA-------------CAGDVPTIEVLAAAQILREEGPELRVRVVN 659 (793)
T ss_pred ceeecHHHHHHHhhcCc--EEEEeccCCCCCCCEEEE-------------ecCCcchHHHHHHHHHHHHhCccceEEEEE
Confidence 45678999999999999 777555543 5545553 344555666667788899988666777777
Q ss_pred EeecCCCCCCccCCCCCCCCcccccccccccCCcc
Q 019933 265 VHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTG 299 (334)
Q Consensus 265 VHA~T~~Q~~~D~~~~kd~R~~RaA~~NIIPtsTG 299 (334)
|.-..-=|+.-|-+|+-+ -+-..++.+++.-
T Consensus 660 Vvdl~rLq~~~~hphg~~----d~efd~lFt~d~p 690 (793)
T COG3957 660 VVDLMRLQPPHDHPHGLS----DAEFDSLFTTDKP 690 (793)
T ss_pred EecchhccCCccCCCCCC----HHHHHhcCCCCcc
Confidence 777777777777676522 2335666666643
No 467
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.84 E-value=80 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.5
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|-|.| .|.||+.+++.+.+++ .+|+.+.
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G-~~V~~~~ 36 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG-ARVVVTD 36 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 789999 9999999999999875 6766664
No 468
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=29.64 E-value=74 Score=32.72 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=28.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
|.-||-|.|-|.|+..++|++.+.+ +++|++..
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~G-i~~v~v~~ 33 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMG-IRSVAIYS 33 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC
Confidence 3349999999999999999999885 88888853
No 469
>PRK12827 short chain dehydrogenase; Provisional
Probab=29.63 E-value=85 Score=27.73 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 4899999 9999999999999875 6766654
No 470
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=29.48 E-value=1.1e+02 Score=32.76 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=25.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
..||||.|-|..||.+++++.+.+ ++++.+
T Consensus 22 ~k~IgIIGgGqlg~mla~aA~~lG-~~Vi~l 51 (577)
T PLN02948 22 ETVVGVLGGGQLGRMLCQAASQMG-IKVKVL 51 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 459999999999999999998875 777766
No 471
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=29.45 E-value=1.4e+02 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=22.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAIN 120 (334)
+|.|.|.|.+|..+++++...+ .. ++++.
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~ 206 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLKN-PKKLIVLD 206 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEc
Confidence 6788889999999999888775 44 34443
No 472
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=29.35 E-value=1.7e+02 Score=27.49 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=52.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|+|-|.+|..+++.+.......++++-. +.+..-++-+| |. + ..++.+...-+ .+...
T Consensus 165 ~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~----g~---~--------~v~~~~~~~~~-~~~v~ 225 (338)
T PRK09422 165 WIAIYGAGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEV----GA---D--------LTINSKRVEDV-AKIIQ 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHc----CC---c--------EEecccccccH-HHHHH
Confidence 7999999999999999887632367777743 33444444322 21 0 11221100000 00000
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEEeCC
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVIISaP 211 (334)
+. .. ++|++|++++.-...+.+-.+++.+.+-+.++.+
T Consensus 226 ~~--~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~ 263 (338)
T PRK09422 226 EK--TG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLP 263 (338)
T ss_pred Hh--cC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeC
Confidence 01 11 5787777766555566667777776655545433
No 473
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=29.32 E-value=2.7e+02 Score=26.12 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=22.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
+|.|.|.|.+|..+++.+...+.-.++++
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~~~v~~~ 198 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGAARIIAV 198 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 78888999999999998887652256666
No 474
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=29.10 E-value=84 Score=26.26 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=51.5
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCce-EEEEeCCCCCHHHHhhhhcccc-ccccCCCeEEEeCCCeEE-EC-CEEEEEEe
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDS-THGVFKGTINVVDDSTLE-IN-GKLIKVFS 165 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~e-iVAIND~~~d~~~~ayLlkYDS-thGkf~~~v~~e~~~~L~-in-Gk~I~V~~ 165 (334)
.||.|.|.|.+|..+++.|...+ +. +.-+-+-..+++.+..-+-|.. .-|+...+.-. +.|. +| +-.+..+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~---~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAK---ERLQEINPDVEVEAIP 78 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHH---HHHHHHSTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHH---HHHHHhcCceeeeeee
Confidence 48999999999999999987654 43 3333322345555544332322 22443221100 0111 11 22333333
Q ss_pred ccC-CCCCCCCc-cCccEEEeccCCCCCHHHHHHHH
Q 019933 166 KRD-PAEIPWGD-YGVDYVVESSGVFTTIAKASAHM 199 (334)
Q Consensus 166 ~~d-P~~i~W~~-~gvDiVvEsTG~f~t~e~a~~hl 199 (334)
..= .+++ +.. .+.|+||+|+..+..+.......
T Consensus 79 ~~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 79 EKIDEENI-EELLKDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp SHCSHHHH-HHHHHTSSEEEEESSSHHHHHHHHHHH
T ss_pred cccccccc-cccccCCCEEEEecCCHHHHHHHHHHH
Confidence 221 1111 111 27899999999866655444333
No 475
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=29.00 E-value=5e+02 Score=24.49 Aligned_cols=96 Identities=24% Similarity=0.249 Sum_probs=50.0
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP 169 (334)
+|.|+|-|.+|..+++.+...+ . .|+++.. ..+...++-+ .|. .-.++.+.-.+ . +..
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~---~~~~~~~~~~----lg~-----------~~~~~~~~~~~-~-~~~ 224 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVG-ARHVVITDV---NEYRLELARK----MGA-----------TRAVNVAKEDL-R-DVM 224 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHH----hCC-----------cEEecCccccH-H-HHH
Confidence 7889999999999988887765 5 4666632 2232222211 111 01111111000 0 000
Q ss_pred CCCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 170 ~~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
.++.. ..++|+||||.|.-...+....+++.+..-+.+
T Consensus 225 ~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 225 AELGM-TEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred HHhcC-CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11111 237999999998655555566677766533333
No 476
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=28.72 E-value=1.8e+02 Score=27.67 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=51.3
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCc-eEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEE---EEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK---VFS 165 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~-eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~---V~~ 165 (334)
+|.|+| .|.+|+.+++.+...... .++++.+. +....+-+ +|- . ..++.+... .+.
T Consensus 154 ~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~----~~~~~~~~----~g~-~----------~~i~~~~~~~~~~~~ 214 (352)
T cd08247 154 KVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSS----RSAELNKK----LGA-D----------HFIDYDAHSGVKLLK 214 (352)
T ss_pred eEEEECCCchHHHHHHHHHHhcCCcceEEEEeCh----hHHHHHHH----hCC-C----------EEEecCCCcccchHH
Confidence 788999 689999999988865434 45555432 11222211 121 0 111111100 000
Q ss_pred ccCCCCCCC--CccCccEEEeccCCCCCHHHHHHHHH---cCCCEEEEe
Q 019933 166 KRDPAEIPW--GDYGVDYVVESSGVFTTIAKASAHMK---GGAKKVVIS 209 (334)
Q Consensus 166 ~~dP~~i~W--~~~gvDiVvEsTG~f~t~e~a~~hl~---aGaKkVIIS 209 (334)
. -+.. +..++|+||+|.|.....+.+..++. .+.+-|.++
T Consensus 215 ~----~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~ 259 (352)
T cd08247 215 P----VLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIV 259 (352)
T ss_pred H----HHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEe
Confidence 0 0111 12379999999997656666677777 776444343
No 477
>PRK08163 salicylate hydroxylase; Provisional
Probab=28.54 E-value=85 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.067 Sum_probs=23.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHcCCCceEEEE
Q 019933 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 88 M~ikVgINGfGrIGR~vlRal~~~~d~eiVAI 119 (334)
|+.+|.|+|-|..|-.+..+|...+ +++.-+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g-~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG-IKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC-CcEEEE
Confidence 4569999999999998888776653 554433
No 478
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.33 E-value=84 Score=30.25 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.3
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVV 117 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiV 117 (334)
||+|.|.|.+|..+...|.+.+ .+|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999999887764 4443
No 479
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=28.29 E-value=57 Score=30.76 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.2
Q ss_pred CccEEEeccCCCCCHHHHHHHHHcCCCEEE
Q 019933 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVV 207 (334)
Q Consensus 178 gvDiVvEsTG~f~t~e~a~~hl~aGaKkVI 207 (334)
++|+|++||+...-.|.+.+.|++|..-++
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkhVl~ 66 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKDLLI 66 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 689999999999999999999999965433
No 480
>PRK06180 short chain dehydrogenase; Provisional
Probab=28.24 E-value=97 Score=28.57 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|.| .|-||+.+++.|.+++ .+|+++.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G-~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG-HRVVGTV 35 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc-CEEEEEe
Confidence 3688999 9999999999998875 7777664
No 481
>PLN02650 dihydroflavonol-4-reductase
Probab=28.21 E-value=75 Score=30.47 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEE
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAI 119 (334)
+|-|-| .|.||+.+++.|.+++ .+|+++
T Consensus 7 ~iLVTGatGfIGs~l~~~L~~~G-~~V~~~ 35 (351)
T PLN02650 7 TVCVTGASGFIGSWLVMRLLERG-YTVRAT 35 (351)
T ss_pred EEEEeCCcHHHHHHHHHHHHHCC-CEEEEE
Confidence 899999 9999999999999875 677665
No 482
>PRK07074 short chain dehydrogenase; Provisional
Probab=27.92 E-value=94 Score=27.97 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
++-|.| .|.||+.+.+.|.+++ .+|+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g-~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG-DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC-CEEEEEe
Confidence 688999 8999999999998875 6766654
No 483
>PRK14851 hypothetical protein; Provisional
Probab=27.81 E-value=19 Score=39.32 Aligned_cols=98 Identities=21% Similarity=0.219 Sum_probs=47.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEEeCC-CCCHHHHhhhhcc-ccccccCCCeEEEeCCCeEEEC-CEEEEEEec
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP-FIDAKYMAYMFKY-DSTHGVFKGTINVVDDSTLEIN-GKLIKVFSK 166 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAIND~-~~d~~~~ayLlkY-DSthGkf~~~v~~e~~~~L~in-Gk~I~V~~~ 166 (334)
.||+|.|.|-+|-.++..|.-.+ +.-..|-|. ..++..+-.-+-| ...-|+..-++-. +.-..+| +-.|+++.+
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~--~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMK--EQALSINPFLEITPFPA 120 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHH--HHHHHhCCCCeEEEEec
Confidence 58999999999999998887653 221122221 1222222221111 2223443322111 0011233 234455443
Q ss_pred c-CCCCCCCCccCccEEEeccCCCC
Q 019933 167 R-DPAEIPWGDYGVDYVVESSGVFT 190 (334)
Q Consensus 167 ~-dP~~i~W~~~gvDiVvEsTG~f~ 190 (334)
. ++++++---.++|+||||+..|.
T Consensus 121 ~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 121 GINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred CCChHHHHHHHhCCCEEEECCCCCc
Confidence 3 33333211137999999998764
No 484
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.75 E-value=1.1e+02 Score=26.90 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=23.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEE
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVA 118 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVA 118 (334)
.+|-|.| .|-||+.+++.+.+++ .+++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g-~~v~~ 35 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG-ADVVV 35 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CeEEE
Confidence 4899999 9999999999998875 45444
No 485
>PRK05086 malate dehydrogenase; Provisional
Probab=27.59 E-value=90 Score=30.54 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.8
Q ss_pred eeEEEEcC-ChhHHHHHHHHHc
Q 019933 90 TKVGINGF-GRIGRLVLRVAAF 110 (334)
Q Consensus 90 ikVgINGf-GrIGR~vlRal~~ 110 (334)
+||+|.|- |+||+.++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 49999995 9999999887754
No 486
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=27.31 E-value=1.1e+02 Score=29.23 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=25.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~ 37 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKG-YEVHGII 37 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEEe
Confidence 3799999 9999999999999875 7877764
No 487
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=27.22 E-value=94 Score=30.56 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=32.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEeCC---CCCHHHHhhhhc
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDP---FIDAKYMAYMFK 134 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIND~---~~d~~~~ayLlk 134 (334)
||.|.| .|..|..+.+.+. +.++++++... ..+++.+..+|+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~ 47 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIR 47 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccChHHHHHHHH
Confidence 699999 9999999988886 56888887422 256777777775
No 488
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=27.15 E-value=2e+02 Score=27.27 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCce-EEEE
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAV 119 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~e-iVAI 119 (334)
+|.|+|-|.+|..+++.+...+ .+ ++++
T Consensus 164 ~vlI~~~g~vg~~a~~la~~~G-~~~v~~~ 192 (340)
T TIGR00692 164 SVLVTGAGPIGLMAIAVAKASG-AYPVIVS 192 (340)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 7788899999999999888775 65 6566
No 489
>PRK07577 short chain dehydrogenase; Provisional
Probab=27.15 E-value=96 Score=27.34 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.4
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~ 34 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLG-HQVIGIA 34 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 688999 9999999999998875 6776664
No 490
>PRK07411 hypothetical protein; Validated
Probab=27.13 E-value=25 Score=35.56 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=23.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHcCCCceEEEEeC
Q 019933 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (334)
Q Consensus 89 ~ikVgINGfGrIGR~vlRal~~~~d~eiVAIND 121 (334)
..||.|.|.|-+|-.++..|...+ +.-+.|-|
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD 69 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVD 69 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 358999999999999999887654 43333433
No 491
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=26.88 E-value=1e+02 Score=27.19 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
-+|-|.| .|.||+.+++.+.+++ ..++.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~ 33 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG-YRVIATY 33 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEe
Confidence 3778888 9999999999998875 6766653
No 492
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=26.53 E-value=5.7e+02 Score=24.41 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=49.2
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEeCCCCCHHHHhhhhccccccccCCCeEEEeCCCeEEECCEEEEEEeccCCC
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIND~~~d~~~~ayLlkYDSthGkf~~~v~~e~~~~L~inGk~I~V~~~~dP~ 170 (334)
+|.|+|.|-+|...++.+...+ ..++++-. +.+....+.+ +|- ...++-. +..
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~---~~~~~~~a~~----~Ga-----------~~vi~~~--------~~~ 220 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQG-ATVHVMTR---GAAARRLALA----LGA-----------ASAGGAY--------DTP 220 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCC-CeEEEEeC---ChHHHHHHHH----hCC-----------ceecccc--------ccC
Confidence 7899999999999888887765 66665532 2333333322 221 1112210 110
Q ss_pred CCCCCccCccEEEeccCCCCCHHHHHHHHHcCCCEEEE
Q 019933 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (334)
Q Consensus 171 ~i~W~~~gvDiVvEsTG~f~t~e~a~~hl~aGaKkVII 208 (334)
..++|++++++|.-.+.+.+-..++.|-+-|++
T Consensus 221 -----~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 221 -----PEPLDAAILFAPAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred -----cccceEEEECCCcHHHHHHHHHhhCCCcEEEEE
Confidence 125788898888655556666677766543333
No 493
>PRK09135 pteridine reductase; Provisional
Probab=26.44 E-value=1.2e+02 Score=26.77 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|-| .|.||+.+.+.+.+++ .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG-YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc
Confidence 4788999 9999999999998875 7777764
No 494
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.42 E-value=3e+02 Score=25.48 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=23.1
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|.|+| .|.+|..+++++...+ ..++.+-
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~g-~~v~~~~ 171 (331)
T cd08273 142 RVLIHGASGGVGQALLELALLAG-AEVYGTA 171 (331)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CEEEEEe
Confidence 789999 6999999988887765 6666553
No 495
>PRK07024 short chain dehydrogenase; Provisional
Probab=26.22 E-value=1.1e+02 Score=27.85 Aligned_cols=30 Identities=30% Similarity=0.237 Sum_probs=24.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|-| .|-||+.+++.+.+++ ..|+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G-~~v~~~~ 33 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG-ATLGLVA 33 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 4788889 9999999999998875 5665553
No 496
>PRK07578 short chain dehydrogenase; Provisional
Probab=26.15 E-value=1.5e+02 Score=25.68 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=22.7
Q ss_pred eEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
++-|-| .|.||+.+.+.+.++ .+++.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 688999 899999999998876 5666554
No 497
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=26.03 E-value=88 Score=30.50 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=24.8
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
||+|.|-|..|+.+++++.+.+ ++++++.
T Consensus 1 kililG~g~~~~~l~~aa~~~G-~~v~~~d 29 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLG-VEVIAVD 29 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 7999999999999999998875 7777663
No 498
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=25.99 E-value=91 Score=30.35 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=24.6
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCceEEEEe
Q 019933 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 91 kVgINGfGrIGR~vlRal~~~~d~eiVAIN 120 (334)
+|||.|-|..|+.+.+++.+.+ ++++++.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG-~~v~~~d 29 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLG-IKVHVLD 29 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CEEEEEC
Confidence 4899999999999999998875 7777664
No 499
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=25.98 E-value=3.4e+02 Score=29.04 Aligned_cols=43 Identities=30% Similarity=0.387 Sum_probs=29.6
Q ss_pred eeEEEEcCChhHHHHHHHHHcCCCceEEEE--------eCCCCCHHHHhhhh
Q 019933 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV--------NDPFIDAKYMAYMF 133 (334)
Q Consensus 90 ikVgINGfGrIGR~vlRal~~~~d~eiVAI--------ND~~~d~~~~ayLl 133 (334)
.|+.|-|||.+|....+.+.+.+ =.+|+| |+-.+|++.+..+-
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~~G-~kvvavsD~~G~l~np~Gid~~eL~~~~ 302 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSEKG-AKVVAVSDSKGVLINPDGIDIEELLDLA 302 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHhcC-CEEEEEEcCceeEECCCCCCHHHHHHHH
Confidence 58999999999998888877653 344554 44455666655443
No 500
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.89 E-value=1e+02 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHcCCCceEEEEe
Q 019933 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (334)
Q Consensus 90 ikVgING-fGrIGR~vlRal~~~~d~eiVAIN 120 (334)
.+|-|.| .|.||+.+++.|.+++ .+|+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 4899999 9999999999998875 6766664
Done!