RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019933
(334 letters)
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 229 bits (584), Expect = 5e-76
Identities = 97/168 (57%), Positives = 118/168 (70%), Gaps = 2/168 (1%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
+K+GINGFGRIGRLVLR AA VVAVNDPFI +YM YMFKYDSTHG+FKG +
Sbjct: 1 SKIGINGFGRIGRLVLR-AALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKA- 58
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
+D L ++GK I VF++ P IPW G +Y+VES+GVFTTI KASAH KGGAKKV+IS
Sbjct: 59 EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 210 APSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGI 257
APSADAPMFV GVN + Y +M +VSNAS + ++ +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 225 bits (574), Expect = 1e-74
Identities = 93/160 (58%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVG+NGFGRIGRLV R A VD+VA+NDPFID YM YMF+YDSTHG F GT+ +
Sbjct: 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV-KAE 61
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+ L ING I +F +RDP++I WGD G +YVVES+GVFTT+ KA AH++GGAK+V+ISA
Sbjct: 62 NGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA 121
Query: 211 PSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKV 250
PSADAPMFV+GVN + Y ++ I+SNAS + +
Sbjct: 122 PSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDL 161
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 209 bits (534), Expect = 2e-68
Identities = 75/171 (43%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDD--VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV 148
KV INGFGRIGR LR R D +DVV +ND K +++ KYDS G F +
Sbjct: 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKT 60
Query: 149 VDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208
DS + ++GK+IKV S R+P +PWGD G+D V+E +GVF A H++ GAKKV+I
Sbjct: 61 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120
Query: 209 SAP-SADAPMFVVGVNEKTYKPNMNIVSNASCT---TNCLAPLAKVVHEEF 255
+AP D P +VVGVNE+ Y I+SNAS + + LA +V ++
Sbjct: 121 TAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 206 bits (525), Expect = 4e-67
Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
Query: 91 KVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV 148
+V INGFGRIGRLV R+ R D++VVA+ND D K +A++ KYDS H F G +
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEY 60
Query: 149 VDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208
+++L ++GK IKVF++ DP+++PW D GVD+V+ES+GVF KA H++ GAKKV+I
Sbjct: 61 -TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119
Query: 209 SAPSADAPM-FVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVH 252
+AP+ + V+G NE KP I+S AS + +
Sbjct: 120 TAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLE 164
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 205 bits (522), Expect = 9e-67
Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVGINGFGRIGR+V R A R D+++VA+ND +DA YMAYM KYDSTHG F GT+ V
Sbjct: 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-K 60
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
D L +NGK I+V ++RDPA + W + GVD V E++G+F T A H+ GAKKVV++
Sbjct: 61 DGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 120
Query: 211 PSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHE 253
PS D PMFV G N Y +IVSNAS T + ++
Sbjct: 121 PSKDNTPMFVKGANFDKYA-GQDIVSNASNETGYSNKVLDLIAH 163
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 191 bits (487), Expect = 2e-61
Identities = 82/169 (48%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
TK+GINGFGRIGRLV R A R D++VVA+NDPF+D ++ Y+ KYDS HG F +
Sbjct: 1 TKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVT-H 59
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
D L I K + VF+++DP++IPWG VD V ES+GVF T AS+H+KGGAKKV++S
Sbjct: 60 ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119
Query: 210 APSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGI 257
AP D P++V+G+N Y IVSNAS +V+ I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 191 bits (487), Expect = 3e-61
Identities = 77/181 (42%), Positives = 103/181 (56%), Gaps = 14/181 (7%)
Query: 91 KVGINGFGRIGRLVLRVAA----FRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTI 146
KVGINGFGRIGR+V + ++DVVAV D DA+Y AY +YD+ HG FK +
Sbjct: 4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEV 63
Query: 147 NVVDDS-------TLEINGKLIKVFS-KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAH 198
S TL +NG I +R+PA++PWG GV+YV+ES+G+FT A A H
Sbjct: 64 TTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGH 123
Query: 199 MKGGAKKVVISAP-SADAPMFVVGVNEKTYKPN-MNIVSNASCTTNCLAPLAKVVHEEFG 256
++GGA+KVVISAP S A V+GVN Y P+ ++VSNA + +V
Sbjct: 124 LRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHMAS 183
Query: 257 I 257
Sbjct: 184 K 184
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 185 bits (470), Expect = 7e-59
Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVGINGFGRIGR V R A D++VVAVND DA +A++ KYDS HG V+
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLD-AEVSVN 60
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+ L +NGK I V ++RDP + WG+ GVD VVES+G FT A+ H++ GAKKV+ISA
Sbjct: 61 GNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 120
Query: 211 PS-ADAPMFVVGVNEKTYKP-NMNIVSNASCTTNCLAPLAKVVHEEFGILEGL 261
P+ + V+GVN+ Y P +++SNAS T + + + +GL
Sbjct: 121 PAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 171 bits (434), Expect = 2e-53
Identities = 23/178 (12%), Positives = 58/178 (32%), Gaps = 15/178 (8%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
V ING+G +G+ V A +DD+ V+ V+ D + + K + + +
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLF 61
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
+ + +E+ G + D V++ + + + G K +
Sbjct: 62 EKAGIEVAGT------------VDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQG 109
Query: 210 APSADAP--MFVVGVNEKTY-KPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTT 264
+ F N + + V + + + ++ +++ +
Sbjct: 110 GEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKA 167
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 165 bits (419), Expect = 2e-51
Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 8/169 (4%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
KVGINGFGRIGR V R V+V +ND D K +A++ KYDS + F G + D
Sbjct: 2 KVGINGFGRIGRQVFR-ILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDD 59
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
L ++GK I+ + +DP EIPW + GV V+ES+GVFT KA AH++GGAKKV+I+A
Sbjct: 60 Q-YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118
Query: 211 PSADAPM-FVVGVNEKTYKP-NMNIVSNASCT---TNCLAPLAKVVHEE 254
P+ + V+GVN + Y P +I+SNAS N +A L ++V +
Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 162 bits (411), Expect = 5e-50
Identities = 74/185 (40%), Positives = 105/185 (56%), Gaps = 21/185 (11%)
Query: 91 KVGINGFGRIGRLVLRVA---AFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTIN 147
+V ING+GRIGR +LR D+++VA+ND D K A++ +YD+ HG F GT++
Sbjct: 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207
V + S + +NG I+V + R+PA++PWG VD V+E +G FTT KA AH+KGGAKKV+
Sbjct: 62 V-NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 208 ISAPSAD--APMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTV 265
ISAP V GVN T K ++SNA E+G ++ T
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLDTT 166
Query: 266 HATTA 270
A +
Sbjct: 167 VALMS 171
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 155 bits (392), Expect = 4e-47
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 15/177 (8%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
KVG+NG+G IG+ V +DD++++ + D + + + I
Sbjct: 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRF 62
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
+ E+ G + VD +V+++ + K G K +
Sbjct: 63 EKEGFEVAG------------TLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110
Query: 210 APSADA--PMFVVGVNEKTY-KPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMT 263
AD FV N + N V + + + ++ + I + +
Sbjct: 111 GEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 144 bits (364), Expect = 8e-43
Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 31/190 (16%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
V +NG+G IG+ V + D+ +V V + + + + +
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIK-KF 60
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
++S + + G + D VV+++ +++ + +
Sbjct: 61 EESGIPVAGT------------VEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQ 107
Query: 210 APSADA---PMFVVGVNEKTY--KPNMNIVSNASCTTNCLAPL------------AKVVH 252
F N K + +VS + + + ++ +
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRITN 167
Query: 253 EEFGILEGLM 262
E GIL+G +
Sbjct: 168 ESLGILKGYL 177
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 121 bits (305), Expect = 2e-34
Identities = 54/64 (84%), Positives = 58/64 (90%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298
CTTNCLAPLAKV+H+ FGI+EGLMTTVHA TATQKTVDGPS K WR GRGA QNIIP+ST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 299 GAAK 302
GAAK
Sbjct: 61 GAAK 64
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 117 bits (294), Expect = 8e-33
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298
CTTNCLAP KV+ ++FGI++G MTT H+ T Q+ +D +D R R A NI+P+ST
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59
Query: 299 GAAK 302
GAAK
Sbjct: 60 GAAK 63
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 112 bits (282), Expect = 6e-31
Identities = 48/66 (72%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 238 SCTTNCLAPLAKV-VHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPS 296
SCTTNCLAP+ V V E FG+ GLMTT+H+ TATQKTVDG S+KDWRGGR A+ NIIPS
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 297 STGAAK 302
+TGAAK
Sbjct: 61 TTGAAK 66
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 110 bits (277), Expect = 3e-30
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298
CTTN LAP+ KV+ E FG+ + LMTTVH+ T Q+ +D P KD R R A+ NIIP++T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59
Query: 299 GAAKVK 304
GAAK
Sbjct: 60 GAAKAT 65
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 110 bits (277), Expect = 3e-30
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298
CTTNCLAP AKV+HE+FGI+ G+MTTVH+ T Q+ +D P KD R R A+++IIP++T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTT 59
Query: 299 GAAK 302
GAAK
Sbjct: 60 GAAK 63
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 95.4 bits (237), Expect = 2e-24
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 238 SCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSS 297
SCTTNCLAPL K ++++ G+ +GLMTTVHA T Q D +D R R A+ ++IP+
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59
Query: 298 TGAAKV 303
TGAA
Sbjct: 60 TGAAAA 65
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 77.2 bits (190), Expect = 9e-18
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 238 SCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSS 297
SC T L K +H+ FGI + V + +G IIP+
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49
Query: 298 TGAAK 302
Sbjct: 50 PKLPS 54
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 77.2 bits (190), Expect = 1e-17
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298
C T L V++ + + T V + + + G S P++
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51
Query: 299 GAAKVKYRYPVFADI 313
+ K V ++
Sbjct: 52 PSHHAKDVNSVIRNL 66
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 37.4 bits (86), Expect = 6e-04
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 31/172 (18%)
Query: 91 KVGINGFGRIGR-LVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
KV I G G IG L+++V +++ A+ IDA +
Sbjct: 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG--IDAASDGLARAQRMGVTTTYAGV--- 60
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
+ +D+V +++ + + + +I
Sbjct: 61 ------------------EGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLID 102
Query: 210 A-PSADAPMFVVGVN--EKTYKPNMNIVSNASCTT----NCLAPLAKVVHEE 254
P+A P V VN E K N+N+V+ A LA ++
Sbjct: 103 LTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERMAQSM 154
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 36.8 bits (84), Expect = 0.001
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTH 139
+V I G+G +GR V ++ A + D+D+V + +F
Sbjct: 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVD 53
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 35.0 bits (79), Expect = 0.006
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTH 139
++G+ G I R V R + + V ++
Sbjct: 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPES 51
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 32.5 bits (73), Expect = 0.039
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA-YMFKYDSTHGVFK 143
V + G GR G + LR + + + + + S +
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALR 62
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 31.1 bits (69), Expect = 0.11
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 91 KVGINGFGRIG-RLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTH 139
++G+ G G I + L V A D + P
Sbjct: 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYA 52
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 30.8 bits (69), Expect = 0.13
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 3/135 (2%)
Query: 77 IPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYD 136
I P ++ + N K+ + G G++G + D +A+ D D M
Sbjct: 8 IAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH 67
Query: 137 STHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKAS 196
+ + I D ++ N K++ V + E G+ ++ V + VF I
Sbjct: 68 GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQE---GESRLNLVQRNVNVFKFIIPQI 124
Query: 197 AHMKGGAKKVVISAP 211
+V+S P
Sbjct: 125 VKYSPDCIIIVVSNP 139
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 30.4 bits (67), Expect = 0.21
Identities = 20/175 (11%), Positives = 44/175 (25%), Gaps = 9/175 (5%)
Query: 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
I G G G ++ + + A+ + A+ H KG +++
Sbjct: 3 NTLIVGASGYAGAELVSYVNRHPHMTITAL---TVSAQSNDAGKLISDLHPQLKGIVDLP 59
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI- 208
++ V +++ V ++ A +
Sbjct: 60 LQPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYG 119
Query: 209 --SAPSADAPMFVVGVNEKTYK--PNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259
V G+ E N+++ A + + FG E
Sbjct: 120 FTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 29.3 bits (64), Expect = 0.48
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 63 AAKGIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR-LVLRVAAFRDDVDVVAVND 121
A P +P I+ D I G G+ +L A + A+
Sbjct: 7 AGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS 66
Query: 122 PFIDAKYMA 130
+ +
Sbjct: 67 GNAEKAKIV 75
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 28.5 bits (63), Expect = 0.51
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 91 KVGINGF-GRIGRLVLRVAAFRDDVDVVAV 119
+VG+ G G++G ++R A DD+ + A
Sbjct: 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE 30
>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 28.0 bits (62), Expect = 0.79
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 68 QPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAK 127
A EI K G KV ++ G++ + D+ V+ ++ P +
Sbjct: 14 SEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPKIEEGW-NADLVVIDLDLPEMFPV 72
Query: 128 YMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEI 172
+ G T+ V + +G+ + D E+
Sbjct: 73 QNIKNHLVHAFSGEVFATM--VAGKWIYFDGEYPTI----DSEEV 111
>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR
{Escherichia coli [TaxId: 562]}
Length = 109
Score = 27.8 bits (62), Expect = 0.80
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 73 TATEIPPTIQKSRSDGNTKVGINGFGRIGRL--VLRVAAFRDDVDVVAVNDPFIDA 126
P I + D T+ G+ + R+ + ++ + D+ I+A
Sbjct: 18 NKQTAPAGIFERHLDKGTRPGV--YPRLSVMHGAVKYLGYADEHSAEPDQVILIEA 71
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 28.3 bits (62), Expect = 0.88
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 91 KVGINGFGRIGRLVLR--VAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTH 139
++GI G G R + + ++ AV +
Sbjct: 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAV 55
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 28.1 bits (62), Expect = 0.91
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 89 NTKVGINGFGRIGRLVLRVAAFRDD 113
+ V I G G IG+ ++ + F
Sbjct: 2 HMTVLIIGMGNIGKKLVELGNFEKI 26
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 27.7 bits (61), Expect = 1.3
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 2/121 (1%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
K+ + G G +G A + + + D + Y+S T
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
+ + I + + P + G D +++++G+ + +V+S
Sbjct: 62 NDYADTANSDIVIITAGLPRKP--GMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119
Query: 211 P 211
P
Sbjct: 120 P 120
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 27.6 bits (61), Expect = 1.3
Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 3/122 (2%)
Query: 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
TK+ + G G +G + AA R + + D + + + +I+
Sbjct: 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
DD + + ++ + + G ++ V + + I + A ++I+
Sbjct: 62 DDPEICRDADMVVITAGPRQKP---GQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118
Query: 210 AP 211
P
Sbjct: 119 NP 120
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 27.9 bits (61), Expect = 1.3
Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 12/172 (6%)
Query: 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV 149
+ GI G G G ++R+ + + ++ K + +F + +
Sbjct: 3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEK 62
Query: 150 DDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209
++ + + D G +D + + + + + +
Sbjct: 63 VSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYREWYGKELSGYENIK- 121
Query: 210 APSADAPMFVVGVNEKTYK--PNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259
V G+ E + N +V N + ++ FG+ E
Sbjct: 122 --------RVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 205
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 128 YMAYMFKYDSTHGVFKGTINVVDDSTL-EINGKLIKV 163
+ K + DDST G I
Sbjct: 144 QTPQISKTKLLKKALDQNLEFTDDSTAIAAMGGKIWF 180
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 27.3 bits (60), Expect = 1.6
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINV 148
+ KV + G G +G A + + + D D + D+ F +
Sbjct: 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ--AFTAPKKI 62
Query: 149 VDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208
+ + V + P + G+ +D V ++ + ++I K +V
Sbjct: 63 YSGEYSDCKDADLVVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA 120
Query: 209 SAP 211
+ P
Sbjct: 121 ANP 123
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 1.8
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 186 SGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKPNMNIVSNASCTTN 242
SG TT AK + + KG ++ ++ A A + + EK P + ++ S +
Sbjct: 21 SGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESI 80
Query: 243 C 243
Sbjct: 81 R 81
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 70
Score = 25.8 bits (57), Expect = 1.9
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDW 283
L +VHE+FG +G+++ ++ +K D P +
Sbjct: 21 TLKALVHEKFG--DGIISAINFKLDVKKVAD-PEGGER 55
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 27.1 bits (59), Expect = 2.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 91 KVGINGFGRIG-RLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130
K+ + G G I + L V A D+++V +A
Sbjct: 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLA 43
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 26.9 bits (59), Expect = 2.4
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 9/126 (7%)
Query: 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHG-VFKGTIN 147
K+ + G G +G + D +A+ D D D HG +F T
Sbjct: 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTD---KLRGEALDLQHGSLFLSTPK 75
Query: 148 VVDDSTLEINGKLIKVFSKRDPAEIPW--GDYGVDYVVESSGVFTTIAKASAHMKGGAKK 205
+V ++ V A G +D + + + I K
Sbjct: 76 IVFGKDYNVSANSKLVI---ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI 132
Query: 206 VVISAP 211
+V++ P
Sbjct: 133 IVVTNP 138
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 26.6 bits (58), Expect = 2.6
Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 85 RSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHG--VF 142
+++G +V + G G +G + + D + + + A D HG
Sbjct: 2 KNNGGARVVVIGAGFVGASYVFALMNQGIADEIVL---IDANESKAIGDAMDFNHGKVFA 58
Query: 143 KGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGG 202
+++ + + V + G+ +D V ++ +F +I ++
Sbjct: 59 PKPVDIWHGDYDDCRDADLVVICAGANQKP--GETRLDLVDKNIAIFRSIVESVMASGFQ 116
Query: 203 AKKVVISAP 211
+V + P
Sbjct: 117 GLFLVATNP 125
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
protein PsbB {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 488
Score = 27.5 bits (61), Expect = 2.9
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 107 VAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING 158
V+ + +++ DP Y +F G I D TL +G
Sbjct: 398 VSFYGGELNGQTFTDPPTVKSYA--------RKAIF-GEIFEFDTETLNSDG 440
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 26.2 bits (57), Expect = 3.2
Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVD 150
K+GI G GR+G + + + D + T F N+
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP--FTRRANIYA 59
Query: 151 DSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210
++ G + + + P + G+ + + ++ V IA+ + + +V++
Sbjct: 60 GDYADLKGSDVVIVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117
Query: 211 P 211
P
Sbjct: 118 P 118
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 26.3 bits (57), Expect = 4.2
Identities = 11/99 (11%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT-QKTVDG--PSMKDWRGGRGASQNIIP 295
C+T + + V +++G+ +++T A + + +++ ++
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHA 60
Query: 296 SSTGAAKVKYRYPVFADIHDLKIVAWWYNFTKSDIAGCW 334
+ K YP+ + V ++T ++
Sbjct: 61 EILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTK 99
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 26.0 bits (57), Expect = 5.0
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 238 SCTTNCLAPLAKVVHEEFGILEGLM 262
SC T L + E + +M
Sbjct: 1 SCNTTGLVRTLSAIREYADYVYAVM 25
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 25.9 bits (56), Expect = 7.2
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271
CT + + ++E + T A +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGA 34
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.4 bits (55), Expect = 9.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 186 SGVFTTIAKASAHMKGGAKKVVISAPSADAP 216
G TTI K + + K V+++A
Sbjct: 20 VGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.383
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,187,465
Number of extensions: 53432
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 58
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)