BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019934
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQB|A Chain A, Crystal Structure Of Heat Shock Protein Htpx Domain From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3CQB|B Chain B, Crystal Structure Of Heat Shock Protein Htpx Domain From
Vibrio Parahaemolyticus Rimd 2210633
Length = 107
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 127 AEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHL 185
A+ + P + + S NA+ V V T L+ TR E +AVLAHE+ H+
Sbjct: 36 AQQAGIGXPTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNXTRDEAEAVLAHEVSHI 94
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 140 RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 191
++S NAY + +V+ +LV + E+ AVLAHE+GH + +H V
Sbjct: 257 KRSSHSNAYFTGLPFTSKRIVLFDTLVNSNSTDEITAVLAHEIGHWQKNHIV 308
>pdb|2YHG|A Chain A, Ab Initio Phasing Of A Nucleoside Hydrolase-Related
Hypothetical Protein From Saccharophagus Degradans That
Is Associated With Carbohydrate Metabolism
Length = 437
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 236 ALLVSQDPKVVISVLMKLAGGCPSLA----------DQLNVDAFLEQARSYDKASSSPVG 285
A + DP+ V + GGC ++A Q +DAF+ + R YD G
Sbjct: 136 AAVDKDDPRPVWATCW---GGCNTIAQAVWKVQNTRSQAQLDAFISKLRVYDILGQDNAG 192
Query: 286 -WYIRNAQTRQLSHPLLVLRAREIDAWSRSQDY 317
W +N L+ +RAR + +W S Y
Sbjct: 193 TWLAKNFPN------LIYIRARSVYSWQPSDSY 219
>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase
Q74d82 At The Resolution 1.7 A. Northeast Structural
Genomics Consortium Target Gsr143a
pdb|3C37|B Chain B, X-ray Structure Of The Putative Zn-dependent Peptidase
Q74d82 At The Resolution 1.7 A. Northeast Structural
Genomics Consortium Target Gsr143a
Length = 253
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 150 LAISGKKPFVVVHTSLVELLTRK-ELQAVLAHELGHLKCDHG 190
AI G + V VHT L++ + EL VLAHE+ H HG
Sbjct: 77 FAIPGGR--VYVHTGLLKAADNETELAGVLAHEINHAVARHG 116
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 10/65 (15%)
Query: 77 DKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPD 136
D +N +L +P L+D+ T+ E +L ++ V+ NQ+ +A++ LN+EAP
Sbjct: 61 DGKN--VLSEVPVLSDVY-----TINE---VLRHLNAEVVFENNQVTIDASKELNIEAPF 110
Query: 137 LYVRQ 141
YVR+
Sbjct: 111 EYVRK 115
>pdb|3IS7|A Chain A, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|B Chain B, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|C Chain C, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|D Chain D, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|E Chain E, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|F Chain F, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|G Chain G, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|H Chain H, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|I Chain I, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|J Chain J, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|K Chain K, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|L Chain L, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|M Chain M, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|N Chain N, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|O Chain O, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|P Chain P, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|Q Chain Q, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|R Chain R, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|S Chain S, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|T Chain T, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|U Chain U, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|V Chain V, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|W Chain W, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|X Chain X, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS8|A Chain A, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|B Chain B, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|C Chain C, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|D Chain D, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|E Chain E, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|F Chain F, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|G Chain G, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|H Chain H, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|I Chain I, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|J Chain J, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|K Chain K, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|L Chain L, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|M Chain M, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|N Chain N, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|O Chain O, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|P Chain P, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|Q Chain Q, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|R Chain R, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|S Chain S, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|T Chain T, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|U Chain U, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|V Chain V, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|W Chain W, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|X Chain X, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3ISE|A Chain A, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|B Chain B, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|C Chain C, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|D Chain D, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|E Chain E, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|F Chain F, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|G Chain G, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|H Chain H, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|I Chain I, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|J Chain J, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|K Chain K, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|L Chain L, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|M Chain M, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|N Chain N, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|O Chain O, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|P Chain P, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|Q Chain Q, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|R Chain R, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|S Chain S, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|T Chain T, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|U Chain U, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|V Chain V, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|W Chain W, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|X Chain X, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISF|A Chain A, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|B Chain B, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|C Chain C, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|D Chain D, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|E Chain E, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|F Chain F, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|4E6K|A Chain A, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|B Chain B, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|C Chain C, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|D Chain D, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|E Chain E, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|F Chain F, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
Length = 158
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 70 DDFRHPLDK--QNTLLLRAIPGLNDLGRALLGTVTEQIM 106
D+ +H DK + L L +P L DLG+ L+G T++++
Sbjct: 50 DEMKHA-DKLIERILFLEGLPNLQDLGKLLIGENTQEML 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,572,736
Number of Sequences: 62578
Number of extensions: 308577
Number of successful extensions: 797
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)