BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019936
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 237 LIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDL 296
L R LP F + + Q+ +Y ++V+ +DL TI+ +++ G Y + D+
Sbjct: 28 LYRQDPESLP--FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEP-WQYVDDI 84
Query: 297 LLLFNNAIVYFPKASLESEAAHQLRNLVSNEI 328
L+FNNA +Y K S + +L + EI
Sbjct: 85 WLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEI 116
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 237 LIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDL 296
L R LP F + + Q+ +Y ++V+ +DL TI+ +++ G Y + D+
Sbjct: 23 LYRQDPESLP--FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP-WQYVDDV 79
Query: 297 LLLFNNAIVYFPKASLESEAAHQLRNLVSNEI 328
L+FNNA +Y K S + +L + EI
Sbjct: 80 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 111
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 237 LIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDL 296
L R LP F + + Q+ +Y ++V+ +DL TI+ +++ G Y + D+
Sbjct: 25 LYRQDPESLP--FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP-WQYVDDV 81
Query: 297 LLLFNNAIVYFPKASLESEAAHQLRNLVSNEI 328
L+FNNA +Y K S + +L + EI
Sbjct: 82 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 113
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 262 EYKELVRQHVDLETIQTRVERGSYSAC-ILTFYRDLLLLFNNAIVYFPKASLESEAAHQL 320
+Y E+V Q +DL IQ +++ Y +LT D LLFNNA Y+ S E +AA +L
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLT--ADFQLLFNNAKSYYKPDSPEYKAACKL 100
Query: 321 RNL 323
+L
Sbjct: 101 WDL 103
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 248 LFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306
LF++ L S+VQ + Y ++++ +DL+TI R++ GSY + I +D+ LL NA Y
Sbjct: 35 LFQK-LPSKVQYPD-YYAIIKEPIDLKTIAQRIQNGSYKS-IHAMAKDIDLLAKNAKTY 90
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 251 RRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306
++L S+VQ + Y ++++ +DL+TI R++ GSY + I +D+ LL NA Y
Sbjct: 36 QKLPSKVQYPD-YYAIIKEPIDLKTIAQRIQNGSYKS-IHAMAKDIDLLAKNAKTY 89
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 262 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 321
EY E+V + L ++ +E G YS I F D+LL+F NA ++ ++L + A L
Sbjct: 245 EYYEIVHSPMALSIVKQNLEIGQYSK-IYDFIIDMLLVFQNAHIFNDPSALIYKDATTLT 303
Query: 322 NLVSNEIKR 330
N + I++
Sbjct: 304 NYFNYLIQK 312
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 251 RRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306
++L S+VQ + Y ++++ +DL+TI R++ GSY + I +D+ LL NA Y
Sbjct: 34 QKLPSKVQYPDYY-AIIKEPIDLKTIAQRIQNGSYKS-IHAMAKDIDLLAKNAKTY 87
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 262 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 321
EY E+V + L ++ +E G YS I F D+LL+F NA ++ ++L + A L
Sbjct: 230 EYYEIVHSPMALSIVKQNLEIGQYSK-IYDFIIDMLLVFQNAHIFNDPSALIYKDATTLT 288
Query: 322 NLVSNEIKR 330
N + I++
Sbjct: 289 NYFNYLIQK 297
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 217 GGHIIEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETI 276
G + T + E L R+L ++ H P L ++ +Y ++++ +DL T+
Sbjct: 4 GSVLTPLTEKDYEGLKRVLRSLQAHKMAWPFL----EPVDPNDAPDYYGVIKEPMDLATM 59
Query: 277 QTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 332
+ RV+R Y + F D+ +F+N Y P S + A L + ++K K
Sbjct: 60 EERVQRRYYEK-LTEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYS 286
+ E L R+L ++ H P L ++ +Y ++++ +DL T++ RV+R Y
Sbjct: 73 DYEGLKRVLRSLQAHKMAWPFL----EPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 128
Query: 287 ACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 332
+ F D+ +F+N Y P S + A L + ++K K
Sbjct: 129 K-LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYS 286
+ E L R+L ++ H P L ++ +Y ++++ +DL T++ RV+R Y
Sbjct: 73 DYEGLKRVLRSLQAHKMAWPFL----EPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 128
Query: 287 ACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 332
+ F D+ +F+N Y P S + A L + ++K K
Sbjct: 129 K-LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 217 GGHIIEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETI 276
G + T + E L R+L ++ H P L ++ +Y ++++ +DL T+
Sbjct: 4 GSVLTPLTEKDYEGLKRVLRSLQAHKMAWPFL----EPVDPNDAPDYYGVIKEPMDLATM 59
Query: 277 QTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 332
+ RV+R Y + F D+ +F+N Y P S + A L + ++K K
Sbjct: 60 EERVQRRYYEK-LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYS 286
+ E L R+L ++ H P L ++ +Y ++++ +DL T++ RV+R Y
Sbjct: 21 DYEGLKRVLRSLQAHKMAWPFL----EPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 76
Query: 287 ACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 332
+ F D+ +F+N Y P S + A L + ++K K
Sbjct: 77 K-LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 121
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 234 LLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFY 293
+L + TH P L LK YK+++++ +D TI+ ++ G Y + TF
Sbjct: 21 ILTEMETHEDAWPFLLPVNLKLVPG----YKKVIKKPMDFSTIREKLSSGQYPN-LETFA 75
Query: 294 RDLLLLFNNAIVYFPKASLESEAAHQLR 321
D+ L+F+N + S A H +R
Sbjct: 76 LDVRLVFDNCETFNEDDSDIGRAGHNMR 103
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 258 QESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAA 317
+E +Y + +++ +DL T++ ++E Y + F D L+FNN +Y + + + A
Sbjct: 41 EEVPDYYDFIKEPMDLSTMEIKLESNKYQK-MEDFIYDARLVFNNCRMYNGENTSYYKYA 99
Query: 318 HQLRNLVSNEIK 329
++L +N++K
Sbjct: 100 NRLEKFFNNKVK 111
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 248 LFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307
+FE+ + ++ Q +Y ++++ I+T++++G Y A F +D+ L+F+N +Y
Sbjct: 41 IFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQY-AYPSEFVKDVQLIFDNCSLYN 99
Query: 308 PKASLESEAAHQLRNLVSNEI 328
S+ + + +N++
Sbjct: 100 TSNSVVAITGKNIETYFNNQL 120
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 234 LLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFY 293
+L + TH P L LK YK+++++ +D TI+ ++ G Y + TF
Sbjct: 18 ILTEMETHEDAWPFLLPVNLKLVPG----YKKVIKKPMDFSTIREKLSSGQYPN-LETFA 72
Query: 294 RDLLLLFNNAIVYFPKASLESEAAHQLR 321
D+ L+F+N + S A H +R
Sbjct: 73 LDVRLVFDNCETFNEDDSDIGRAGHNMR 100
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 259 ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308
E +Y++++ +D T++ ++ G+Y + L F +D+ L+F+NA Y P
Sbjct: 39 EYPDYRDIIDTPMDFGTVRETLDAGNYDS-PLEFCKDIRLIFSNAKAYTP 87
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 262 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 321
EY E+V L ++ +E G YS I F D LL+F NA ++ ++L + A L
Sbjct: 195 EYYEIVHSPXALSIVKQNLEIGQYSK-IYDFIIDXLLVFQNAHIFNDPSALIYKDATTLT 253
Query: 322 NLVSNEIKR 330
N + I++
Sbjct: 254 NYFNYLIQK 262
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 262 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 321
EY E+V L ++ +E G YS I F D LL+F NA ++ ++L + A L
Sbjct: 189 EYYEIVHSPXALSIVKQNLEIGQYSK-IYDFIIDXLLVFQNAHIFNDPSALIYKDATTLT 247
Query: 322 NLVSNEIKR 330
N + I++
Sbjct: 248 NYFNYLIQK 256
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 232 IRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSY---SAC 288
+ L DL + H+ P F+R + + + +Y +++ +DL TI+ R+E Y S C
Sbjct: 20 VVLKDLWK-HSFSWP--FQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASEC 76
Query: 289 ILTFYRDLLLLFNNAIVY 306
I D +F+N +Y
Sbjct: 77 I----EDFNTMFSNCYLY 90
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 259 ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308
E +Y++++ +D T++ +E G+Y + + +D+ L+F+N+ Y P
Sbjct: 50 EYPDYRDIIDTPMDFATVRETLEAGNYES-PMELCKDVRLIFSNSKAYTP 98
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 258 QESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAA 317
+++ +Y E + +DL TI+ ++ G Y + F D+L +F NA Y+ + S
Sbjct: 43 KKNADYYEKISDPLDLITIEKQILTGYYKT-VEAFDADMLKVFRNAEKYYGRKSPVGRDV 101
Query: 318 HQLRNLVSN 326
+LR N
Sbjct: 102 CRLRKAYYN 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,951,286
Number of Sequences: 62578
Number of extensions: 330590
Number of successful extensions: 646
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 33
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)