Query 019936
Match_columns 333
No_of_seqs 173 out of 584
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05495 Bromo_cbp_like Bromodo 100.0 4.1E-29 8.9E-34 207.7 11.4 105 226-333 3-108 (108)
2 cd05497 Bromo_Brdt_I_like Brom 100.0 1.2E-28 2.6E-33 204.7 11.2 100 228-330 6-106 (107)
3 cd05507 Bromo_brd8_like Bromod 100.0 1.5E-28 3.2E-33 202.8 11.2 97 229-330 6-102 (104)
4 cd05505 Bromo_WSTF_like Bromod 100.0 3.1E-28 6.7E-33 199.2 10.6 95 228-327 2-96 (97)
5 cd05504 Bromo_Acf1_like Bromod 99.9 1.8E-27 3.8E-32 200.0 10.9 101 225-330 11-111 (115)
6 cd05496 Bromo_WDR9_II Bromodom 99.9 2.1E-27 4.5E-32 201.2 11.4 98 229-331 8-106 (119)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 2.7E-27 5.9E-32 194.5 10.4 95 228-328 5-99 (99)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 3.1E-27 6.8E-32 192.4 10.4 95 229-328 3-97 (97)
9 cd05509 Bromo_gcn5_like Bromod 99.9 9.3E-27 2E-31 189.8 11.4 98 228-330 3-100 (101)
10 cd05520 Bromo_polybromo_III Br 99.9 6.2E-27 1.3E-31 193.3 10.4 97 228-327 2-102 (103)
11 cd05510 Bromo_SPT7_like Bromod 99.9 1.2E-26 2.7E-31 194.5 11.4 100 226-330 7-108 (112)
12 cd05512 Bromo_brd1_like Bromod 99.9 1.5E-26 3.2E-31 189.5 10.2 90 229-323 4-93 (98)
13 cd05506 Bromo_plant1 Bromodoma 99.9 2.2E-26 4.8E-31 186.8 10.8 96 229-327 3-98 (99)
14 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.7E-26 5.8E-31 188.6 10.6 99 227-328 5-103 (103)
15 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.5E-26 5.5E-31 190.6 10.3 101 228-331 3-107 (107)
16 cd05513 Bromo_brd7_like Bromod 99.9 2.6E-26 5.7E-31 188.4 10.2 93 229-326 4-96 (98)
17 KOG1474 Transcription initiati 99.9 1.7E-26 3.6E-31 241.2 10.7 102 226-330 222-323 (640)
18 cd05498 Bromo_Brdt_II_like Bro 99.9 4.6E-26 9.9E-31 186.1 10.6 99 228-327 2-101 (102)
19 cd05528 Bromo_AAA Bromodomain; 99.9 7.5E-26 1.6E-30 189.6 11.1 97 230-331 7-107 (112)
20 cd05499 Bromo_BDF1_2_II Bromod 99.9 8.5E-26 1.8E-30 184.9 10.6 100 228-328 2-102 (102)
21 cd05502 Bromo_tif1_like Bromod 99.9 1.1E-25 2.5E-30 186.5 11.3 101 226-332 4-107 (109)
22 cd05511 Bromo_TFIID Bromodomai 99.9 1.4E-25 2.9E-30 187.7 11.5 98 228-330 2-99 (112)
23 cd05524 Bromo_polybromo_I Brom 99.9 1.2E-25 2.7E-30 188.4 10.7 101 229-332 5-109 (113)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.3E-25 2.9E-30 185.5 10.5 97 229-328 3-103 (105)
25 cd05525 Bromo_ASH1 Bromodomain 99.9 1E-24 2.3E-29 181.1 10.1 97 228-327 4-104 (106)
26 cd05517 Bromo_polybromo_II Bro 99.9 9.9E-25 2.1E-29 180.2 9.9 95 229-326 3-101 (103)
27 cd05501 Bromo_SP100C_like Brom 99.9 1.5E-24 3.3E-29 179.7 11.0 97 228-332 4-100 (102)
28 smart00297 BROMO bromo domain. 99.9 1.9E-24 4E-29 175.2 11.2 98 228-330 9-106 (107)
29 cd05519 Bromo_SNF2 Bromodomain 99.9 1.7E-24 3.6E-29 177.9 10.4 96 229-327 3-102 (103)
30 cd05518 Bromo_polybromo_IV Bro 99.9 1.9E-24 4.1E-29 178.6 10.0 95 229-326 3-101 (103)
31 cd05529 Bromo_WDR9_I_like Brom 99.9 2.7E-24 5.7E-29 183.9 11.2 100 225-329 23-126 (128)
32 PF00439 Bromodomain: Bromodom 99.9 1.9E-23 4.2E-28 162.5 9.9 84 231-319 1-84 (84)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.7E-23 5.9E-28 171.6 10.2 95 229-326 4-102 (104)
34 cd04369 Bromodomain Bromodomai 99.9 3.2E-23 7E-28 161.9 10.0 94 229-327 3-98 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 7.8E-23 1.7E-27 170.0 10.5 96 229-329 4-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.2E-22 4.9E-27 168.5 11.4 98 231-331 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.8 7.2E-19 1.6E-23 147.7 10.2 97 229-330 6-106 (110)
38 COG5076 Transcription factor i 99.7 2.1E-18 4.6E-23 169.4 8.5 96 231-329 150-246 (371)
39 KOG1245 Chromatin remodeling c 99.7 1.5E-18 3.3E-23 193.4 8.4 95 231-331 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.6 1.1E-16 2.5E-21 168.1 5.2 97 230-331 610-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 1.1E-13 2.3E-18 116.7 2.9 79 228-309 5-90 (114)
42 KOG0955 PHD finger protein BR1 99.3 6.9E-12 1.5E-16 137.0 7.4 98 228-330 567-664 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.1 7.8E-11 1.7E-15 100.5 4.3 44 267-311 61-104 (119)
44 KOG0008 Transcription initiati 99.1 9E-11 2E-15 129.2 5.8 89 234-327 1390-1478(1563)
45 KOG0386 Chromatin remodeling c 98.9 2.1E-09 4.6E-14 116.3 6.9 98 229-329 1027-1128(1157)
46 KOG1827 Chromatin remodeling c 98.9 2.4E-09 5.3E-14 112.0 6.7 98 228-328 54-155 (629)
47 KOG0008 Transcription initiati 98.8 6.3E-09 1.4E-13 115.0 7.1 98 227-329 1262-1359(1563)
48 KOG1472 Histone acetyltransfer 98.8 7E-09 1.5E-13 110.0 5.6 70 240-314 300-369 (720)
49 KOG1828 IRF-2-binding protein 98.7 2.2E-09 4.8E-14 106.5 -0.6 96 231-331 24-119 (418)
50 KOG1474 Transcription initiati 98.7 3.1E-09 6.7E-14 112.1 0.2 89 237-328 3-91 (640)
51 KOG1828 IRF-2-binding protein 98.4 1.3E-07 2.8E-12 94.2 3.9 88 229-322 211-298 (418)
52 COG5076 Transcription factor i 97.9 2.9E-06 6.2E-11 84.0 0.6 93 233-330 270-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.7 0.0025 5.4E-08 55.7 5.2 61 270-331 59-119 (131)
54 PF00249 Myb_DNA-binding: Myb- 95.9 0.007 1.5E-07 43.0 2.8 30 3-40 17-47 (48)
55 smart00717 SANT SANT SWI3, AD 94.8 0.023 4.9E-07 38.4 2.3 33 3-43 17-49 (49)
56 cd00167 SANT 'SWI3, ADA2, N-Co 92.7 0.1 2.2E-06 34.7 2.5 30 3-40 15-44 (45)
57 PF13837 Myb_DNA-bind_4: Myb/S 92.0 0.16 3.5E-06 39.6 3.2 37 8-48 35-71 (90)
58 PF13921 Myb_DNA-bind_6: Myb-l 91.9 0.093 2E-06 38.5 1.6 33 5-46 16-49 (60)
59 KOG0732 AAA+-type ATPase conta 91.3 0.1 2.3E-06 58.7 1.8 64 246-310 533-601 (1080)
60 KOG0644 Uncharacterized conser 90.5 0.16 3.4E-06 56.0 2.2 59 269-328 1052-1110(1113)
61 smart00595 MADF subfamily of S 85.8 0.71 1.5E-05 36.1 2.7 30 8-46 28-57 (89)
62 PF12776 Myb_DNA-bind_3: Myb/S 79.1 2.4 5.2E-05 33.4 3.4 36 8-46 32-67 (96)
63 TIGR02606 antidote_CC2985 puta 76.6 3.7 8.1E-05 31.8 3.7 27 274-301 12-38 (69)
64 PF10545 MADF_DNA_bdg: Alcohol 69.4 4.3 9.4E-05 30.6 2.5 32 8-46 27-58 (85)
65 PF03693 RHH_2: Uncharacterise 67.4 6.5 0.00014 31.4 3.2 27 274-301 15-41 (80)
66 PF05377 FlaC_arch: Flagella a 66.2 8.8 0.00019 29.1 3.5 32 70-101 1-32 (55)
67 PLN03212 Transcription repress 65.4 3.8 8.2E-05 39.6 1.8 29 3-39 41-70 (249)
68 PF12949 HeH: HeH/LEM domain; 52.9 5.3 0.00012 27.5 0.3 22 66-87 1-22 (35)
69 KOG4282 Transcription factor G 51.0 16 0.00035 35.8 3.5 37 7-47 83-119 (345)
70 PF13873 Myb_DNA-bind_5: Myb/S 49.1 27 0.00059 26.6 3.8 33 8-43 39-71 (78)
71 KOG1827 Chromatin remodeling c 47.8 2.1 4.5E-05 46.1 -3.4 64 258-322 223-286 (629)
72 PLN03091 hypothetical protein; 46.5 12 0.00025 39.2 1.7 28 3-38 30-58 (459)
73 COG5259 RSC8 RSC chromatin rem 45.0 13 0.00027 39.2 1.7 25 8-40 299-323 (531)
74 PF04859 DUF641: Plant protein 44.8 85 0.0018 27.6 6.6 62 36-98 56-123 (131)
75 KOG0644 Uncharacterized conser 44.4 6.2 0.00014 44.1 -0.5 85 225-323 73-186 (1113)
76 KOG4466 Component of histone d 43.4 32 0.00068 34.0 4.1 21 81-101 114-134 (291)
77 COG5067 DBF4 Protein kinase es 40.4 16 0.00035 37.8 1.6 34 30-68 425-466 (468)
78 PF08172 CASP_C: CASP C termin 39.4 39 0.00085 32.5 4.1 33 68-100 92-124 (248)
79 cd02987 Phd_like_Phd Phosducin 38.3 21 0.00045 32.0 1.9 19 60-78 37-55 (175)
80 COG5509 Uncharacterized small 37.1 46 0.00099 25.9 3.3 34 61-101 17-50 (65)
81 PF07716 bZIP_2: Basic region 36.9 73 0.0016 23.1 4.3 34 65-98 21-54 (54)
82 PF03962 Mnd1: Mnd1 family; I 35.8 50 0.0011 30.3 4.0 38 65-102 65-102 (188)
83 PF02037 SAP: SAP domain; Int 35.7 21 0.00046 24.0 1.2 31 66-96 1-32 (35)
84 PF06005 DUF904: Protein of un 31.7 80 0.0017 24.9 4.0 52 37-101 6-57 (72)
85 COG5481 Uncharacterized conser 30.8 90 0.002 24.3 4.0 31 68-98 10-46 (67)
86 cd02988 Phd_like_VIAF Phosduci 28.8 40 0.00087 30.8 2.2 18 61-78 59-76 (192)
87 COG3826 Uncharacterized protei 28.8 32 0.0007 32.4 1.5 36 2-37 5-41 (236)
88 PF08826 DMPK_coil: DMPK coile 25.0 1.8E+02 0.004 22.3 4.8 39 61-99 15-55 (61)
89 COG3609 Predicted transcriptio 24.8 87 0.0019 25.3 3.2 29 273-302 14-42 (89)
90 PRK04239 hypothetical protein; 23.5 1.2E+02 0.0026 26.0 3.9 18 63-80 3-20 (110)
91 smart00586 ZnF_DBF Zinc finger 22.1 42 0.00091 24.8 0.8 16 31-46 9-32 (49)
92 smart00338 BRLZ basic region l 21.8 1.8E+02 0.0038 21.7 4.2 33 67-99 24-56 (65)
93 PF09036 Bcr-Abl_Oligo: Bcr-Ab 20.3 1.3E+02 0.0029 24.3 3.3 29 63-93 22-50 (79)
94 PF14502 HTH_41: Helix-turn-he 20.2 86 0.0019 23.2 2.1 28 69-99 7-34 (48)
No 1
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.1e-29 Score=207.68 Aligned_cols=105 Identities=21% Similarity=0.377 Sum_probs=99.3
Q ss_pred cchhhHHHHHHHHHhC-CCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 226 AESEPLIRLLDLIRTH-NHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~h-k~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
...+.|+.+|+.|.+| +. ||+|..||++...++||||++|++||||+||++||++|.|.++. +|.+|+.|||+||+
T Consensus 3 ~l~~~~~~il~~l~~~~~~--s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~ 79 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPE--SLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPW-QYVDDVWLMFDNAW 79 (108)
T ss_pred HHHHHHHHHHHHHHHcCcc--cchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 3456799999999999 99 99999999996568999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKRTKR 333 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k~~~ 333 (333)
.||+++|.+|++|..|+++|.++|..++.
T Consensus 80 ~yN~~~s~i~~~a~~l~~~F~~~~~~~~~ 108 (108)
T cd05495 80 LYNRKTSRVYKYCTKLAEVFEQEIDPVMQ 108 (108)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998763
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-28 Score=204.74 Aligned_cols=100 Identities=19% Similarity=0.303 Sum_probs=93.5
Q ss_pred hhhH-HHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 228 SEPL-IRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 228 ~q~L-~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
.+.| ..||+.|.+|+. ||+|.+||++...++||||+||++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 6 ~~~~~~~il~~l~~~~~--s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~y 82 (107)
T cd05497 6 LQYLLKVVLKALWKHKF--AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSAS-ECIQDFNTMFTNCYIY 82 (107)
T ss_pred HHHHHHHHHHHHHhCCc--CccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3444 577999999999 99999999985558999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 307 FPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
|+++|+++.+|..|+++|.++|.+
T Consensus 83 N~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 83 NKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 3
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.5e-28 Score=202.80 Aligned_cols=97 Identities=25% Similarity=0.426 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
+.|+.+|+.|.+|+. |++|.+||+. ..+|+||++|++||||+||++||++|.|.++. +|.+||.|||+||++||+
T Consensus 6 ~~~~~il~~l~~~~~--a~~F~~pV~~--~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 6 KAILLVYRTLASHRY--ASVFLKPVTE--DIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA-EFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHcCCC--CHhhcCCCCc--cccCCHHHHhCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 569999999999999 9999999999 89999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 019936 309 KASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+++.+|.+|..|++.+.+.|..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999865
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.1e-28 Score=199.22 Aligned_cols=95 Identities=25% Similarity=0.392 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
-+.|..||+.|++|+. +|+|..||+. .++||||+||++||||+||++||++|.|.++. +|.+||.|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~--s~~F~~pv~~--~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN 76 (97)
T cd05505 2 LQKCEEILSKILKYRF--SWPFREPVTA--DEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQ-EFLDDMKLVFSNAEKYY 76 (97)
T ss_pred HHHHHHHHHHHHhCCC--cccccCCCCh--hhcccHHHHcCCcCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3679999999999999 9999999998 89999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 019936 308 PKASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~ 327 (333)
+++|.++.+|..|+++|.+.
T Consensus 77 ~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 77 ENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 5
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.8e-27 Score=200.03 Aligned_cols=101 Identities=24% Similarity=0.414 Sum_probs=97.3
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
..+.+.|..||+.|..|+. +|+|.+||+. ..+|+||++|++||||+||++||++|.|.++. +|..||.|||+||+
T Consensus 11 ~~~~~~c~~il~~l~~~~~--s~~F~~pvd~--~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~-~f~~Dv~LI~~Na~ 85 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKD--SWPFLRPVSK--IEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAE-EFLSDIQLVFSNCF 85 (115)
T ss_pred HHHHHHHHHHHHHHHhCCC--chhhcCCCCc--cccccHHHHhcCcccHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHH
Confidence 4566789999999999999 9999999998 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
.||+++|++|.+|..|+++|.++|++
T Consensus 86 ~yN~~~s~i~~~A~~l~~~f~~~~~~ 111 (115)
T cd05504 86 LYNPEHTSVYKAGTRLQRFFIKRCRK 111 (115)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975
No 6
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.1e-27 Score=201.23 Aligned_cols=98 Identities=21% Similarity=0.401 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
+.|..||+.|.+|+. +|+|..||+. .++||||+||++||||+||++||.+|.|.++. +|..||.|||.||+.||+
T Consensus 8 ~~c~~il~~l~~~~~--s~~F~~PVd~--~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~-ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 8 KQCKELVNLMWDCED--SEPFRQPVDL--LKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM-EFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHhCCc--cccccCCCCh--hhcCcHHHHhCCcccHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 568999999999999 9999999999 78999999999999999999999999999999 999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhh
Q 019936 309 K-ASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 309 ~-~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
+ +|.+|.+|..|.++|.++|++.
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l 106 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKI 106 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 9999999999999999988764
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.7e-27 Score=194.54 Aligned_cols=95 Identities=21% Similarity=0.340 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
+..|..+++.|+ |+. ||+|..||+. .++||||.+|++||||+||++||++|.|.++. +|.+|+.|||.||+.||
T Consensus 5 ~~~L~~~~~~~~-~~~--s~~F~~PV~~--~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 5 SKLLKFALERMK-QPG--AEPFLKPVDL--EQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTD-AFLADAKWILHNAIIYN 78 (99)
T ss_pred HHHHHHHHHHHh-CcC--cchhcCCCCh--hhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 456888899998 999 9999999999 89999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 019936 308 PKASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m 328 (333)
+++|.++.+|..|.+++..+|
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhhC
Confidence 999999999999999988765
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.1e-27 Score=192.36 Aligned_cols=95 Identities=21% Similarity=0.398 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
..|..||+.|..|+. +++|.+||+. ..+|+||++|++||||+||++||++|.|.++. +|..||.|||.||+.||+
T Consensus 3 ~~c~~il~~l~~~~~--~~~F~~pv~~--~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~ 77 (97)
T cd05503 3 ALCETILDEMEAHED--AWPFLEPVNT--KLVPGYRKIIKKPMDFSTIREKLESGQYKTLE-EFAEDVRLVFDNCETFNE 77 (97)
T ss_pred HHHHHHHHHHHcCCC--chhhcCCCCc--cccCCHHHHhCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 468999999999999 9999999999 88999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 019936 309 KASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~v~k~m 328 (333)
++|.++++|..|+++|.++|
T Consensus 78 ~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 78 DDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 9
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.3e-27 Score=189.84 Aligned_cols=98 Identities=23% Similarity=0.440 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
.+.|..||+.|.+|+. +++|.+||++ .++|+||++|++||||.||++||.+|.|.++. +|..||.|||.||+.||
T Consensus 3 ~~~~~~il~~l~~~~~--a~~F~~pv~~--~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN 77 (101)
T cd05509 3 YTQLKKVLDSLKNHKS--AWPFLEPVDK--EEAPDYYDVIKKPMDLSTMEEKLENGYYVTLE-EFVADLKLIFDNCRLYN 77 (101)
T ss_pred HHHHHHHHHHHHhCCC--chhhcCCCCh--hhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3568999999999999 9999999999 78999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 019936 308 PKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+++|.++++|..|+++|.+.|++
T Consensus 78 ~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 78 GPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 10
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=6.2e-27 Score=193.31 Aligned_cols=97 Identities=27% Similarity=0.408 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
+|||..|++.|+++++ .++++|.+|++. .+.||||++|++||||+||+.||++|.|.++. +|..||.|||.||
T Consensus 2 ~~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~--~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na 78 (103)
T cd05520 2 SNPLWQLYDTIRNARNNQGQLLAEPFLKLPSK--RKYPDYYQEIKNPISLQQIRTKLKNGEYETLE-ELEADLNLMFENA 78 (103)
T ss_pred CchHHHHHHHHHhhcCCCCCCccHhhhcCCCc--ccCCCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHH
Confidence 7899999999999986 489999999999 89999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~ 327 (333)
+.||+++|.+|.+|..|+++|.+.
T Consensus 79 ~~yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 79 KRYNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998763
No 11
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=194.46 Aligned_cols=100 Identities=21% Similarity=0.382 Sum_probs=93.6
Q ss_pred cchhhHHHHHHHHHhC-CCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 226 AESEPLIRLLDLIRTH-NHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~h-k~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
.-.+.|..||+.|++| +. +++|.+||++ .++||||++|++||||+||++||++|.|.++. +|..||.|||+||+
T Consensus 7 ~~~~~~~~il~~l~~~~~~--s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~Li~~N~~ 81 (112)
T cd05510 7 EFYESLDKVLNELKTYTEH--STPFLTKVSK--REAPDYYDIIKKPMDLGTMLKKLKNLQYKSKA-EFVDDLNLIWKNCL 81 (112)
T ss_pred HHHHHHHHHHHHHHhcCcc--ccchhcCCCh--hhcCCHHHHhcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3456799999999999 89 9999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCC-HHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKAS-LESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S-~~~k~A~~L~~~v~k~m~k 330 (333)
.||++++ +++++|..|++++.+.|..
T Consensus 82 ~yN~~~s~~~~~~A~~l~~~~~~~~~~ 108 (112)
T cd05510 82 LYNSDPSHPLRRHANFMKKKAEHLLKL 108 (112)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999765 7899999999999998854
No 12
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=189.48 Aligned_cols=90 Identities=24% Similarity=0.422 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
..|..+|+.|++|+. +++|.+||+. .++|+||++|++||||+||++||.+|.|.++. +|..||.|||.||+.||+
T Consensus 4 ~~l~~il~~l~~~~~--~~~F~~pVd~--~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~ 78 (98)
T cd05512 4 VLLRKTLDQLQEKDT--AEIFSEPVDL--SEVPDYLDHIKQPMDFSTMRKKLESQRYRTLE-DFEADFNLIINNCLAYNA 78 (98)
T ss_pred HHHHHHHHHHHhCCC--chhhcCCCCc--cccCCHHHHhcCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 468899999999999 9999999999 89999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 019936 309 KASLESEAAHQLRNL 323 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~ 323 (333)
++|.+|++|..|++.
T Consensus 79 ~~s~~~~~A~~l~~~ 93 (98)
T cd05512 79 KDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 13
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-26 Score=186.80 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
+.|..||+.|++|+. +++|..||+....++|+||++|++||||+||++||++|.|.++. +|..|+.|||.||+.||+
T Consensus 3 ~~c~~il~~l~~~~~--~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yn~ 79 (99)
T cd05506 3 KQCGTLLRKLMKHKW--GWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPE-EFAADVRLTFANAMRYNP 79 (99)
T ss_pred HHHHHHHHHHHhCCC--CccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 468999999999999 99999999985458999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 019936 309 KASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~v~k~ 327 (333)
++|.+|.+|..|+++|.++
T Consensus 80 ~~s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 80 PGNDVHTMAKELLKIFETR 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 14
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.7e-26 Score=188.55 Aligned_cols=99 Identities=14% Similarity=0.284 Sum_probs=94.0
Q ss_pred chhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
..+.|+++|+.|++|+. +++|..||++....+|+||++|++||||+||+.||.+|.|.++. +|..|+.|||.||+.|
T Consensus 5 ~~~~~~~ii~~l~~~~~--a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 81 (103)
T cd05500 5 QHKFLLSSIRSLKRLKD--ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVE-EFTADFNLMVDNCLTF 81 (103)
T ss_pred HHHHHHHHHHHHHcCCC--ChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 34679999999999999 99999999986568999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 019936 307 FPKASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~m 328 (333)
|+++|.++.+|..|++.|.+.|
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 15
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.5e-26 Score=190.56 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
.+.|..||+.|.+|++ .++++|.+||+. .++||||++|++||||+||++||.+|.|.++. +|..||.|||.||
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~--~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na 79 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLE-DLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc--ccCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHH
Confidence 4678899999999887 379999999999 89999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
+.||+++|.+|.+|..|+++|...|++.
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999863
No 16
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.6e-26 Score=188.37 Aligned_cols=93 Identities=17% Similarity=0.331 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
+-|..||+.|+.|+. +++|..||+. ..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.||+
T Consensus 4 ~~l~~il~~l~~~~~--~~~F~~PV~~--~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~ 78 (98)
T cd05513 4 KALEQLIRQLQRKDP--HGFFAFPVTD--FIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIE-EFKDDFKLMCENAMKYNK 78 (98)
T ss_pred HHHHHHHHHHHcCCc--cccccCcCCc--cccccHHHHHcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 458899999999999 9999999998 88999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 019936 309 KASLESEAAHQLRNLVSN 326 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~v~k 326 (333)
++|.+|++|..|.....+
T Consensus 79 ~~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 79 PDTIYYKAAKKLLHSGMK 96 (98)
T ss_pred CCCHHHHHHHHHHHhhhh
Confidence 999999999999875443
No 17
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.93 E-value=1.7e-26 Score=241.23 Aligned_cols=102 Identities=22% Similarity=0.401 Sum_probs=97.6
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 019936 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 305 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 305 (333)
.....|..||..|+.|++ +|||..|||.+..++||||+||++||||+|||.||++|.|.++. +|..||+|||+||+.
T Consensus 222 ~~lk~C~~iLk~l~~~k~--awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~-eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 222 ELLKQCLSILKRLMKHKH--AWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAE-EFAADVRLTFDNCMT 298 (640)
T ss_pred HHHHHHHHHHHHHHhccC--CCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHH-HHHHHHHHHHHHHHh
Confidence 344669999999999999 99999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 306 YFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 306 YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
||++++.+|.||..|+.+|..+|..
T Consensus 299 YNp~g~dV~~Ma~~L~~~Fe~rw~~ 323 (640)
T KOG1474|consen 299 YNPEGSDVYAMAKKLQEVFEERWAS 323 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988754
No 18
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.6e-26 Score=186.09 Aligned_cols=99 Identities=18% Similarity=0.366 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHhCCC-CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 228 SEPLIRLLDLIRTHNH-HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~-~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
.+.|..||+.|..|+. .++++|.+||++...+.|+||++|++||||+||++||.+|.|.++. +|..||.|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 80 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQ-EFAADVRLMFSNCYKY 80 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3568999999999933 2399999999985557999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 019936 307 FPKASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~ 327 (333)
|+++|.++.+|..|+++|.+.
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.93 E-value=7.5e-26 Score=189.62 Aligned_cols=97 Identities=26% Similarity=0.428 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 019936 230 PLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 309 (333)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 309 (333)
.|..||+.|++|+. +++|.+||+. .+.||||++|++||||+||++||++|.|.++. +|..||.|||+||+.||++
T Consensus 7 ~L~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~ 81 (112)
T cd05528 7 FLRDVLKRLASDKR--FNAFTKPVDE--EEVPDYYEIIKQPMDLQTILQKLDTHQYLTAK-DFLKDIDLIVTNALEYNPD 81 (112)
T ss_pred HHHHHHHHHHhCCC--chhhcCCCCc--cccCcHHHHHcCCCCHHHHHHHHcCCCcCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 48899999999999 9999999999 89999999999999999999999999999999 9999999999999999999
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhh
Q 019936 310 A----SLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 310 ~----S~~~k~A~~L~~~v~k~m~k~ 331 (333)
+ +.++.+|..|++.|.+.+.+.
T Consensus 82 ~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 82 RDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhc
Confidence 5 689999999999999988764
No 20
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.5e-26 Score=184.92 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHhCCC-CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 228 SEPLIRLLDLIRTHNH-HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~-~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
.+.|.+||+.|.+++. .++++|.+||++...+.|+||++|++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~-ef~~D~~li~~N~~~y 80 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAK-EFERDVRLIFKNCYTF 80 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3568999999999653 2599999999994449999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 019936 307 FPKASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~m 328 (333)
|+++|.+|.+|..|+++|.+.|
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 21
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=186.53 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=95.3
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhC---CCccCcHHHHHHHHHHHHHH
Q 019936 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVER---GSYSACILTFYRDLLLLFNN 302 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~---g~Y~S~~~EF~rDl~Lmf~N 302 (333)
.+...|..||..|..|+. |++|.+||+. +.|+||++|++||||+||++||+. |.|.++. +|.+||.|||.|
T Consensus 4 ~~~~~c~~il~~l~~~~~--s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~-~f~~D~~li~~N 77 (109)
T cd05502 4 IDQRKCERLLLELYCHEL--SLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPE-EFVADVRLMFKN 77 (109)
T ss_pred HHHHHHHHHHHHHHhCCC--ChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHH
Confidence 345669999999999999 9999999997 699999999999999999999998 6999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 303 AIVYFPKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 303 A~~YN~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
|+.||+++|.++.+|..|+++|.+.|++.+
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999998754
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.4e-25 Score=187.70 Aligned_cols=98 Identities=17% Similarity=0.365 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
+--|..|++.|++|+. +++|..||++ ...|+||++|++||||+||++||.+|.|.++. +|.+|+.|||.||+.||
T Consensus 2 ~~~l~~ii~~l~~~~~--s~~F~~pv~~--~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN 76 (112)
T cd05511 2 SFILDEIVNELKNLPD--SWPFHTPVNK--KKVPDYYKIIKRPMDLQTIRKKISKHKYQSRE-EFLEDIELIVDNSVLYN 76 (112)
T ss_pred HHHHHHHHHHHHhCCC--chhhcCCCCh--hhcccHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3458899999999999 9999999999 78999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 019936 308 PKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+++|.++++|..|++.+...|..
T Consensus 77 ~~~s~i~~~A~~l~~~~~~~~~~ 99 (112)
T cd05511 77 GPDSVYTKKAKEMLELAEELLAE 99 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.2e-25 Score=188.35 Aligned_cols=101 Identities=29% Similarity=0.332 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
+.|..||+.|++++. .++.+|.++++. ..+|+||++|++||||+||++||++|.|.++. +|..||.|||+||+
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~--~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~ 81 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKR--RNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVD-DLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCc--ccCCCHHHHhCCccCHHHHHHHhCcCCCCCHH-HHHHHHHHHHHHHH
Confidence 568889999997655 357899999998 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
.||+++|.+|++|..|+++|.+.+++.+
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887754
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.3e-25 Score=185.54 Aligned_cols=97 Identities=22% Similarity=0.394 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
|.|..||+.|..+++ .++++|.+||+. .+.||||++|++||||+||++||.+|.|.++. +|..||.|||.||+
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~--~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~l~~~Na~ 79 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSK--SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLD-DMVSDFVLMFDNAC 79 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCc--ccCCcHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHH
Confidence 457788888888765 479999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m 328 (333)
.||+++|++|.+|..|+++|.+.-
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 25
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1e-24 Score=181.12 Aligned_cols=97 Identities=26% Similarity=0.341 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
.+.|..||+.|..++. .++++|.+|++. .+.||||++|++||||+||++||.+|.|.++. +|..|+.|||.||
T Consensus 4 ~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k--~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~-ef~~D~~l~f~Na 80 (106)
T cd05525 4 AQVLKEICDAIITYKDSNGQSLAIPFINLPSK--KKNPDYYERITDPVDLSTIEKQILTGYYKTPE-AFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHhhccCCCcccHhhccCCCc--ccCCchhhhCCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHH
Confidence 3558888888888776 478999999999 99999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~ 327 (333)
+.||+++|.+|++|..|+++|...
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999998753
No 26
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=9.9e-25 Score=180.19 Aligned_cols=95 Identities=22% Similarity=0.377 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
|.|..||+.|.++.+ .++++|.++++. .+.|+||++|++||||+||++||.+|.|.++. +|..||.|||.||+
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~--~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~ 79 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSK--VLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIE-DMEKDLDLMVKNAK 79 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCC--CCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHH-HHHHHHHHHHHHHH
Confidence 568889999998777 478999999999 99999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSN 326 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k 326 (333)
.||+++|.+|.+|..|+++|..
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 27
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.5e-24 Score=179.68 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
...|-.||..|..|+. +++|..+ + ..+||||++|++||||+||++||.+|+|.++. +|.+||.|||+||+.||
T Consensus 4 l~~ce~il~~l~~~~~--s~~f~~~--p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~-ef~~D~~Lif~N~~~yN 76 (102)
T cd05501 4 LLKCEFLLLKVYCMSK--SGFFISK--P--YYIRDYCQGIKEPMWLNKVKERLNERVYHTVE-GFVRDMRLIFHNHKLFY 76 (102)
T ss_pred HHHHHHHHHHHHhCcc--cccccCC--C--CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHc
Confidence 3458899999999999 9999774 3 57999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 308 PKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
+++ .++.+|..|++.|.+.+++..
T Consensus 77 ~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 77 KDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999998753
No 28
>smart00297 BROMO bromo domain.
Probab=99.91 E-value=1.9e-24 Score=175.20 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
...|..|++.+.+|+. +++|.+||+. ...|+||++|++||||.||++||++|.|.++. +|..|+.|||.||+.||
T Consensus 9 ~~~~~~i~~~~~~~~~--~~~F~~~~~~--~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~~n 83 (107)
T smart00297 9 QSLLKAVLDKLDSHRL--SWPFLKPVDR--KEAPDYYDIIKKPMDLSTIKKKLENGKYSSVE-EFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHhCcc--chhhccCCCh--hhccCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3558899999999988 9999999999 78999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 019936 308 PKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+++|.++.+|..|+++|.+.|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 29
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=177.91 Aligned_cols=96 Identities=21% Similarity=0.408 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
+.|..||+.|.++++ .++++|.+|++. .+.|+||++|++||||+||++||+.|.|.++. +|..||.|||.||+
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~ 79 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSK--KLYPDYYVIIKRPIALDQIKRRIEGRAYKSLE-EFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCC--CCCcCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHH
Confidence 568899999996664 369999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~ 327 (333)
.||+++|.+|.+|..|++.|.+.
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.9e-24 Score=178.65 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
+-|..|++.|....+ .++.+|..||+. .++||||++|++||||+||++||.+|.|.++. +|..||.|||.||+
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~ 79 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSK--KDYPDYYKIILEPIDLKTIEHNIRNDKYATEE-ELMDDFKLMFRNAR 79 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCc--ccCccHHHHcCCCcCHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHH
Confidence 347777777777643 469999999999 99999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSN 326 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k 326 (333)
.||+++|++|.+|..|+++|.+
T Consensus 80 ~yN~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 80 HYNEEGSQVYEDANILEKVLKE 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 31
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=183.85 Aligned_cols=100 Identities=25% Similarity=0.278 Sum_probs=94.3
Q ss_pred ccchhhHHHHHHHHH---hCCCCCCccccccCcchhh-cCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIR---THNHHLPSLFERRLKSQVQ-ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLF 300 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~---~hk~~~a~~F~~PVd~~~~-e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf 300 (333)
....+.++.+|+.|. .|+. +++|..||+. . .+|+||++|++||||+||++||.+|.|.+.. +|..||.|||
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~--~~~F~~pv~~--~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~ 97 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEI--AEYFEYPVDL--RAWYPDYWNRVPVPMDLETIRSRLENRYYRSLE-ALRHDVRLIL 97 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcc--cccccCCCCc--cccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHH
Confidence 344566899999999 8988 9999999999 7 9999999999999999999999999999999 9999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 019936 301 NNAIVYFPKASLESEAAHQLRNLVSNEIK 329 (333)
Q Consensus 301 ~NA~~YN~~~S~~~k~A~~L~~~v~k~m~ 329 (333)
.||+.||+++|.++++|..|+++|.+.|+
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998875
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.90 E-value=1.9e-23 Score=162.50 Aligned_cols=84 Identities=30% Similarity=0.475 Sum_probs=79.5
Q ss_pred HHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 019936 231 LIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 310 (333)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 310 (333)
|..||+.|..|+. +++|.+||+. ...|+|+++|++||||.||++||++|.|.++. +|..||.+||.||+.||+++
T Consensus 1 C~~il~~l~~~~~--~~~F~~~~~~--~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~-~f~~Dv~~i~~Na~~yn~~~ 75 (84)
T PF00439_consen 1 CREILEELMKHPI--SSPFSKPVDP--KEYPDYYEIIKNPMDLSTIRKKLENGKYKSIE-EFEADVRLIFQNARRYNPPD 75 (84)
T ss_dssp HHHHHHHHHTSTT--GGGGSSSTHT--TTSTTHHHHSSSS--HHHHHHHHHTTSSSSHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHcCCC--chhhcCCCCh--hhCCCHHHHHhhccchhhhhHHhhccchhhHH-HHHHHHHHHHHHHHHHCCCc
Confidence 6789999999999 9999999988 99999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHH
Q 019936 311 SLESEAAHQ 319 (333)
Q Consensus 311 S~~~k~A~~ 319 (333)
|++|.+|.+
T Consensus 76 s~~~~~A~~ 84 (84)
T PF00439_consen 76 SPIYKAAEK 84 (84)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHhcC
Confidence 999999974
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.7e-23 Score=171.62 Aligned_cols=95 Identities=25% Similarity=0.354 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
+-+-.||+.|++.++ .++++|.++++. ...|+||++|++||||+||++||..|.|.++. +|..|+.|||.||+
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~--~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~ 80 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDK--AREPEYYQEISNPISLDDIKKKVKRRKYKSFD-QFLNDLNLMFENAK 80 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCc--cccCcHHHHhCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHH
Confidence 345666777766544 369999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSN 326 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k 326 (333)
.||+++|.+|.+|..|++.|.+
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.89 E-value=3.2e-23 Score=161.89 Aligned_cols=94 Identities=27% Similarity=0.429 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHhC--CCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 229 EPLIRLLDLIRTH--NHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 229 q~L~~iL~~L~~h--k~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
..|..+++.|..+ +. +++|..||+. ...|+|+++|++||||.||+.||.+|.|.++. +|..|+.|||.||+.|
T Consensus 3 ~~~~~i~~~l~~~~~~~--~~~F~~~~~~--~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~~ 77 (99)
T cd04369 3 KKLRSLLDALKKLKRDL--SEPFLEPVDP--KEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLE-EFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHHHHHHHhhcccc--cHHHhcCCCh--hcCCCHHHHHhCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4588999999999 88 9999999999 89999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 019936 307 FPKASLESEAAHQLRNLVSNE 327 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~ 327 (333)
|++++.++.+|..|+.+|.+.
T Consensus 78 n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 78 NGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=7.8e-23 Score=170.02 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
+.|..+|+.|.+.+. .++.+|..+++. .+.||||++|++||||+||++||++ |.++. +|..|+.|||.||.
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~--~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~-ef~~D~~li~~Na~ 78 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLR--KDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQ-EFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCcc--ccCccHHHHhcCCCCHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHH
Confidence 457788888887766 367899999998 8999999999999999999999998 99999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIK 329 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~ 329 (333)
.||+++|++|.+|..|+++|.+.|-
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998874
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.2e-22 Score=168.45 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=86.0
Q ss_pred HHHHHHHHHh-CCCCCCccccccCc---chhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 231 LIRLLDLIRT-HNHHLPSLFERRLK---SQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 231 L~~iL~~L~~-hk~~~a~~F~~PVd---~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
|-.++..+++ -|- .+||.-||. +..+++|+|+.+|++||||+||++||++|.|+++. ||.+||.|||+||++|
T Consensus 5 L~f~~~~~k~~lp~--~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 5 LKFIVSRMKSWLPP--DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLE-EFKADALLLLHNTAIF 81 (109)
T ss_pred HHHHHHHHHhcCcc--cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4455566666 455 889999996 32356999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 307 FPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
|+++|.+|.+|..|.+.+..+|.+-
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.78 E-value=7.2e-19 Score=147.72 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
+.|..|++.|.+|.+ .++.+|.+.+.. .|+||.+|++||||.+|++||++|.|.+++ +|.+||.|||+||.
T Consensus 6 ~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~----~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld-~~~~D~~lmf~NAr 80 (110)
T cd05526 6 ELLATLFVSVMNHQDEEGRCYSDSLAELPEL----AVDGVGPKKIPLTLDIIKRNVDKGRYRRLD-KFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHhccCCCCCCchHHHHHCCCc----ccCchhhhcCCccHHHHHHHHHcCCcCcHH-HHHHHHHHHHHHHH
Confidence 568999999999996 479999999874 367789999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
.||.++|.+|..|.+|+.+|.+.-.+
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876544
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.75 E-value=2.1e-18 Score=169.43 Aligned_cols=96 Identities=25% Similarity=0.374 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCCCC-CCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 019936 231 LIRLLDLIRTHNHH-LPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 309 (333)
Q Consensus 231 L~~iL~~L~~hk~~-~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 309 (333)
+..++..+.....+ +.++|..+|+. .+.|+||.||+.||||.||++||+.|.|.++. +|..|++|||+||..||.+
T Consensus 150 i~~~~~~~~~~~~~~~s~~F~~~p~k--~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~e-ef~~D~~lM~~N~~~yN~~ 226 (371)
T COG5076 150 IAKFKKQLFLRDGRFLSSIFLGLPSK--REYPDYYEIIKSPMDLLTIQKKLKNGRYKSFE-EFVSDLNLMFDNCKLYNGP 226 (371)
T ss_pred HHHHHHHhhcccccccccccccCCcc--ccCCChheeecchhhHHHHHHHHHhhhhhhHH-HHHHHHHHHHHhhhhccCC
Confidence 44444444443332 59999999999 99999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 019936 310 ASLESEAAHQLRNLVSNEIK 329 (333)
Q Consensus 310 ~S~~~k~A~~L~~~v~k~m~ 329 (333)
++.+|.+|..|++.+...|+
T Consensus 227 ~s~v~~~a~~l~~~~~~~i~ 246 (371)
T COG5076 227 DSSVYVDAKELEKYFLKLIE 246 (371)
T ss_pred CcchhhhhHHHHHHHHHHHH
Confidence 99999999999999999886
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.75 E-value=1.5e-18 Score=193.40 Aligned_cols=95 Identities=22% Similarity=0.385 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 019936 231 LIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 310 (333)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 310 (333)
|-.||..|..|+. ||||++||+. ..+||||+||++||||.||+.|+..|.|.+.. +|..||.|||.||..||.+
T Consensus 1306 ~e~il~e~~~~~~--awPFlepVn~--~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~e-ef~~Di~lvf~Nc~~yN~~- 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA--AWPFLEPVNP--KEVPDYYDIIKKPMDLSTIREKLSKGIYPSPE-EFATDIELVFDNCETYNED- 1379 (1404)
T ss_pred HHHHHHHHHHhhh--cchhhccCCh--hhcccHHHHhcChhHHHHHHHHHhcccCCCHH-HHHHHHHHHHHHHHHhccc-
Confidence 7899999999999 9999999999 99999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 019936 311 SLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 311 S~~~k~A~~L~~~v~k~m~k~ 331 (333)
|.+++++..|++||.+.+++.
T Consensus 1380 s~i~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1380 SEIGRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhhhhcchHHHHHHHHHHhh
Confidence 999999999999999865543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=1.1e-16 Score=168.09 Aligned_cols=97 Identities=20% Similarity=0.394 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 019936 230 PLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 309 (333)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 309 (333)
.+..+|..|++|.+ +|||.+||.. .++||||.+|++||||.||+-+|.++.|.... .|++|+.+||+||.+||+.
T Consensus 610 ~~~~il~~l~~h~~--awPf~~Pv~~--~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~-~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 610 AIQNILDQLQNHGD--AWPFLKPVNK--KEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVE-LFMADVVRVFANCRMYNGS 684 (720)
T ss_pred HHHhHHhhhhcCCc--cCCccCcccc--ccCCcHHHHhcccccHHHHhhhccccchhhHH-HHHHHHHHHHhhhhccCCc
Confidence 46789999999999 9999999999 99999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 019936 310 ASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 310 ~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
++.+|++|..|..++...|...
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred cchheecccchhhhhcchhhhh
Confidence 9999999999999999887654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.40 E-value=1.1e-13 Score=116.68 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCC-------ccCcHHHHHHHHHHHH
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGS-------YSACILTFYRDLLLLF 300 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~-------Y~S~~~EF~rDl~Lmf 300 (333)
.+.++.+|..+..|+. +|||..||++...++||||++|++||||+||+.||.++. |.--. .+..++..++
T Consensus 5 ~~~~l~~l~~~~~~~~--~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (114)
T cd05494 5 LERVLRELKRHRRNED--AWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQE-DPADKQIDDE 81 (114)
T ss_pred HHHHHHHHHHhhhCCC--CCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccc-cccccccccc
Confidence 3557777888888889 999999999987899999999999999999999999963 33333 6666777777
Q ss_pred HHHhhhCCC
Q 019936 301 NNAIVYFPK 309 (333)
Q Consensus 301 ~NA~~YN~~ 309 (333)
.||.-||..
T Consensus 82 ~~~~~~~~~ 90 (114)
T cd05494 82 GRRSPSNIY 90 (114)
T ss_pred cccCccccc
Confidence 776666554
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.26 E-value=6.9e-12 Score=136.96 Aligned_cols=98 Identities=22% Similarity=0.435 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
...|..+|+.|+.... ..+|..||+. .++|||.+||++||||.||+.++.+|.|+++. +|..|+.||+.||+.||
T Consensus 567 ~kLl~~~l~~lq~kD~--~gif~~pvd~--~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle-~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKKDS--YGIFAEPVDP--SELPDYIDIIKKPMDFFTMRLKLESGAYSTLE-PIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred HHHHHHHHHHhhcccc--cCceeeccCh--hhcccHHHHhcCccchhhhhhhccccchhhhh-HHHHhHhHhHhHHHHhh
Confidence 3445688899999999 9999999999 99999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 019936 308 PKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
..++.+|++|..|++++.+.+.+
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHh
Confidence 99999999999999988876543
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.09 E-value=7.8e-11 Score=100.45 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=40.9
Q ss_pred hccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 019936 267 VRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKAS 311 (333)
Q Consensus 267 Ik~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S 311 (333)
+-.||||+||++||.+|+|.++. +|+.||.|||+||..||.+++
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~-~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPK-DFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHhCCHHH
Confidence 34699999999999999999999 999999999999999998844
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.09 E-value=9e-11 Score=129.17 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=78.9
Q ss_pred HHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHH
Q 019936 234 LLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLE 313 (333)
Q Consensus 234 iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~ 313 (333)
+..++++-+. +|+|+.||++ ..+|+||.+|++||||.||.+++....|.+.. ||.+|+.+|+.||..||+..+.+
T Consensus 1390 ~vs~~~~ipe--s~~f~~~v~~--k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~-e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1390 IVSQMKEIPE--SWPFHEPVNK--KRVPDYYKKIKNPMDLETILKNIPPHKYDSRS-EFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred HHHHHHhcch--hcccccccch--hhchHHHHHhcChhhHHHHhhcCCccccccHH-HHhhhhHhhcccceeecCccccc
Confidence 3344555666 9999999999 89999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 019936 314 SEAAHQLRNLVSNE 327 (333)
Q Consensus 314 ~k~A~~L~~~v~k~ 327 (333)
..-|.++-.+....
T Consensus 1465 ~~k~~k~~ev~~~~ 1478 (1563)
T KOG0008|consen 1465 TKKARKIGEVGLAN 1478 (1563)
T ss_pred cHHHHHHHHHHHHH
Confidence 98888776554443
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=2.1e-09 Score=116.34 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
.++..|+.....|.+ .++.+|....+. .+.||||.||++|||+..|+++|.++.|.+.. ++..|+++||+||.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~--k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~na~ 1103 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSR--KEYPDYYEIIKKPVAIDKIKKRIENHKYNSLK-ELEKDFMLLFNNAR 1103 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccc--ccccchHHHhcchhhHHHHhhhccccccchHH-HHHHHHHhhcchhh
Confidence 568888888776655 368999999999 99999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIK 329 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~ 329 (333)
.||..+|.+|..|..|..++.....
T Consensus 1104 ~~~~egs~~y~d~~~l~~~~~~~~~ 1128 (1157)
T KOG0386|consen 1104 TYNEEGSRVYEDAIVLQSVFKSARQ 1128 (1157)
T ss_pred hhccCCceechhHHHHHHHHhhhHH
Confidence 9999999999999999998876543
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.88 E-value=2.4e-09 Score=111.97 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
...+..||..+..+.+ .+...|.+..+. ...|.||.+|-+||-|..|++|+..+.|.+.. .|+.|++||+.||
T Consensus 54 ~~~f~~il~~~~~~~d~~gk~~~d~feklp~~--~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~-~f~~D~~lm~ena 130 (629)
T KOG1827|consen 54 IPKFKTILASLLDLKDDEGKQLFDKFEKLPSR--KEFPEYYYVIQQPISLDQIKRKVKKGRYKRLS-FFQLDFLLMTENA 130 (629)
T ss_pred HHHHHHHHHHHHhhccccCcccchhHhhcccc--ccCCCcceeecCcccHHHHHHHHHhcccccHH-HHHHHHHHHHHHH
Confidence 3447778888877776 588999999999 99999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHH
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~m 328 (333)
..||.+++.+|++|..|...|....
T Consensus 131 ~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 131 RLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999998877643
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.81 E-value=6.3e-09 Score=115.01 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=89.5
Q ss_pred chhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
.+--|-.+.++++.-++ ..+|..||+. .+++|||.||+.||||.|||+.|....|.+-+ .|..|+.||+.|..+|
T Consensus 1262 ~ss~l~~i~n~~~~~~~--t~~f~~Pv~~--k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~-~fle~~~~~~~ns~~y 1336 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPN--TYPFPTPVNA--KEVKDYYRVITPPMDLQTQKKLVRKRLYESRE-HFLEELPLIVSNSTKY 1336 (1563)
T ss_pred cccchHHHHHHHhcCCC--CcCCCCccch--hhccchhhccCCCcchHHHHHHHHHHHHHHHH-HHHHHhHHHhhchhhh
Confidence 33346778899999999 9999999999 99999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 019936 307 FPKASLESEAAHQLRNLVSNEIK 329 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~m~ 329 (333)
|++.+.+...|..|..+....|.
T Consensus 1337 ng~~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1337 NGPLASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred cCchHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988777766653
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.77 E-value=7e-09 Score=109.99 Aligned_cols=70 Identities=21% Similarity=0.440 Sum_probs=66.3
Q ss_pred hCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 019936 240 THNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLES 314 (333)
Q Consensus 240 ~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~ 314 (333)
.|.+ +|+|..||+. .++|+||.||+-||||.|+..|+..+.|.+.. +|..|+.+||.||..||...+..-
T Consensus 300 ~~~~--s~~~~~kvs~--~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~-~fv~d~~~~~~n~~~~n~ee~~~~ 369 (720)
T KOG1472|consen 300 RTEH--STPFLEKVSK--EDAPNYYQIIKAPMDLSTELKKLKSGPYCSKE-EFVNDLMLIWRNCEKYNSEESHGL 369 (720)
T ss_pred cccc--ccccccCCCh--hhCcchHHhhhcchHHHHHHHHhccccccchh-HHHHHHHHHHhcchhhccccchhh
Confidence 5889 9999999999 99999999999999999999999999999999 999999999999999999765543
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.70 E-value=2.2e-09 Score=106.50 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=83.9
Q ss_pred HHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 019936 231 LIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 310 (333)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 310 (333)
.-.+|..+-+... -..|.-||.+ .=.|+|.+||..|||+.||+.||+.+.|.+.. +|.-|..||++||++||..+
T Consensus 24 ~ehhlrkl~sKdp--~q~fafplt~--~map~y~~iis~Pmd~~t~r~kidd~~yl~L~-~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 24 AEHHLRKLPSKDP--KQKFAFPLTD--KMAPNYLEIISEPMDRITKRSKIDDTRYLVLS-QMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred HHHHHHhccccCh--hhhhccccch--hhccchHhhhhcccccccccccCCCccceech-hhhhhhcccccchhhhhcCC
Confidence 3455556655555 6678888998 88999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 019936 311 SLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 311 S~~~k~A~~L~~~v~k~m~k~ 331 (333)
|.++.+|..|+.+.....+..
T Consensus 99 Tv~~~aaKrL~~v~~~~~qe~ 119 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGMTQER 119 (418)
T ss_pred ccccccccccchhhcchhhHH
Confidence 999999999998877665544
No 50
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.69 E-value=3.1e-09 Score=112.12 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=82.0
Q ss_pred HHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q 019936 237 LIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEA 316 (333)
Q Consensus 237 ~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~ 316 (333)
.+..|.+ +|+|..||+.+....|+||.+|++|||+.||+.++++..|.+.. +-.+|+.-+|.||.+||.+.-.++.+
T Consensus 3 ~~~~~~~--~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~-~~~~~f~~~~sn~~~~~~~~~~v~~~ 79 (640)
T KOG1474|consen 3 EARKHKL--AWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSAS-ECIADFKTKFSNCYLFNDSGDDVVRM 79 (640)
T ss_pred ccccccc--cccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHh-hhhhhccccccchhcccCCccchhhc
Confidence 3456767 99999999988889999999999999999999999998899999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 019936 317 AHQLRNLVSNEI 328 (333)
Q Consensus 317 A~~L~~~v~k~m 328 (333)
+..+..+|.+.+
T Consensus 80 ~~~~~~~~~~~~ 91 (640)
T KOG1474|consen 80 KQSLEKLFPKKL 91 (640)
T ss_pred cccchhhccccc
Confidence 999999887654
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.45 E-value=1.3e-07 Score=94.23 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
+.+....+++..-.. ...|.-|+-. ..+|.|.-+|++|+|+.|++.|+.++.|.| - +|..|..||+.||++||.
T Consensus 211 ~l~~~q~~kl~~~~p--~~~lnyg~ta--s~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~-~f~~D~kl~~l~amT~ge 284 (418)
T KOG1828|consen 211 QLQTLQEDKLNRVDP--VAYLNYGPTA--SFAPGYSMTITEVEPPGTYGDKSSANDYES-L-SFTQDRKLIALKAVTNGE 284 (418)
T ss_pred HHHHHHHHHhcccCc--hhhhcccchh--hhcccccccccccCCCcchhhhhhhhhhhh-h-hhhcccchhhHHHHhcCC
Confidence 334455566666666 8889999999 999999999999999999999999999999 5 999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 019936 309 KASLESEAAHQLRN 322 (333)
Q Consensus 309 ~~S~~~k~A~~L~~ 322 (333)
+.+.+|.+|+.+..
T Consensus 285 hsk~yyelank~lh 298 (418)
T KOG1828|consen 285 HSKSYYELANKQLH 298 (418)
T ss_pred cchHHHHHHHhhhh
Confidence 99999999987754
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.91 E-value=2.9e-06 Score=83.98 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=85.8
Q ss_pred HHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 019936 233 RLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASL 312 (333)
Q Consensus 233 ~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~ 312 (333)
.++..+..|.. +|+|.+|+.. ...|+|+++|..+||+.|++-++..+.|.... +|.+|..++++||..||.....
T Consensus 270 ~~i~~~~~~~~--~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
T COG5076 270 VLITNSQAHVG--AWPFLRPVSD--EEVPDYYKDIRDPMDLSTKELKLRNNYYRPEE-TFVRDAKLFFDNCVMYNGEVTD 344 (371)
T ss_pred hcccccccccc--cccccccCCc--ccccchhhhhhcccccccchhhhhcccCCCcc-ccccccchhhhcccccchhhhh
Confidence 33444478888 9999999999 99999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019936 313 ESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 313 ~~k~A~~L~~~v~k~m~k 330 (333)
+++.+..+..++.+.++-
T Consensus 345 ~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 345 YYKNANVLEDFVIKKTRL 362 (371)
T ss_pred hhhhccchhhhHhhhhhh
Confidence 999999999999887754
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.74 E-value=0.0025 Score=55.67 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 270 HVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 270 PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
|-||.-+++|++.|.|.|+. +|-.||..|+.=++.=-+...+.-++-..+.-+|.+.|..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~-~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVL-DFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHH-HHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 89999999999999999999 99999999999888776666666666666778888888654
No 54
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=95.90 E-value=0.007 Score=43.00 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||+.+|..||..|. +| |+..|+.+|..|
T Consensus 17 ~~~g~~~W~~Ia~~~~~~R--------t~~qc~~~~~~~ 47 (48)
T PF00249_consen 17 KKYGKDNWKKIAKRMPGGR--------TAKQCRSRYQNL 47 (48)
T ss_dssp HHSTTTHHHHHHHHHSSSS--------THHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHcCCCC--------CHHHHHHHHHhh
Confidence 3699999999999999 55 789999999876
No 55
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.80 E-value=0.023 Score=38.45 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=27.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhh
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERR 43 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rR 43 (333)
..||..+|..||..+.+| |+..|+.+|..|.++
T Consensus 17 ~~~g~~~w~~Ia~~~~~r--------t~~~~~~~~~~~~~~ 49 (49)
T smart00717 17 KKYGKNNWEKIAKELPGR--------TAEQCRERWNNLLKP 49 (49)
T ss_pred HHHCcCCHHHHHHHcCCC--------CHHHHHHHHHHHcCC
Confidence 357889999999999755 789999999988653
No 56
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=92.71 E-value=0.1 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=25.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||...|+.||..|..| |+..|+.+|.-+
T Consensus 15 ~~~g~~~w~~Ia~~~~~r--------s~~~~~~~~~~~ 44 (45)
T cd00167 15 KKYGKNNWEKIAKELPGR--------TPKQCRERWRNL 44 (45)
T ss_pred HHHCcCCHHHHHhHcCCC--------CHHHHHHHHHHh
Confidence 368889999999999875 679999999765
No 57
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=92.04 E-value=0.16 Score=39.55 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=29.5
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCCC
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDDP 48 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~~ 48 (333)
.-|..||.+|+.+-. - .||..|+.||..|.++|-.-.
T Consensus 35 ~~w~~Ia~~l~~~G~---~-rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 35 KVWKEIAEELAEHGY---N-RTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp HHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCC---C-CCHHHHHHHHHHHHHHHHHHH
Confidence 479999999998853 2 499999999999999998643
No 58
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=91.91 E-value=0.093 Score=38.46 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=25.1
Q ss_pred CCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH-HHhhhcC
Q 019936 5 GGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD-LERRFND 46 (333)
Q Consensus 5 HGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d-L~rRfs~ 46 (333)
|| .+|..||..|-.| ||..|+.||.. |+...+.
T Consensus 16 ~g-~~W~~Ia~~l~~R--------t~~~~~~r~~~~l~~~~~~ 49 (60)
T PF13921_consen 16 YG-NDWKKIAEHLGNR--------TPKQCRNRWRNHLRPKISR 49 (60)
T ss_dssp HT-S-HHHHHHHSTTS---------HHHHHHHHHHTTSTTSTS
T ss_pred HC-cCHHHHHHHHCcC--------CHHHHHHHHHHHCcccccC
Confidence 56 4899999998545 78999999999 8766554
No 59
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.1 Score=58.65 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=56.9
Q ss_pred CccccccCcchhh---cCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHH--HHHHHHHHHhhhCCCC
Q 019936 246 PSLFERRLKSQVQ---ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYR--DLLLLFNNAIVYFPKA 310 (333)
Q Consensus 246 a~~F~~PVd~~~~---e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~r--Dl~Lmf~NA~~YN~~~ 310 (333)
...|-+|+++... ..++|-.+|+++||+...-.|+..+.|.++. +|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~-~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVR-SFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHH-hhhcccchhhhcCcHHhcCCCc
Confidence 6788899885211 1569999999999999999999999999999 9999 9999999999999976
No 60
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.47 E-value=0.16 Score=56.03 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=51.3
Q ss_pred cCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 019936 269 QHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEI 328 (333)
Q Consensus 269 ~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~A~~L~~~v~k~m 328 (333)
=|.-|+.|+.+|++.+|.+.. .|..|+-.|..||-+|+..+-.+...+..|...|...+
T Consensus 1052 vpls~evi~~rlEn~yYrs~e-~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1052 VPLSLEVIRSRLENNYYRSQE-ALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CcccHHHHHHHHHhhhhhhhH-hhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 366789999999999999999 99999999999999999999877777777777666554
No 61
>smart00595 MADF subfamily of SANT domain.
Probab=85.81 E-value=0.71 Score=36.11 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=27.0
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
.+|..||.+|.. |+..|+.|+..|+.+|..
T Consensus 28 ~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~ 57 (89)
T smart00595 28 KAWEEIAEELGL---------SVEECKKRWKNLRDRYRR 57 (89)
T ss_pred HHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHH
Confidence 489999999976 789999999999999975
No 62
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=79.07 E-value=2.4 Score=33.39 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.9
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
..|..|+.++..++-.. .|...|+-||..|++.|..
T Consensus 32 ~~w~~i~~~~~~~~~~~---~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 32 EGWNNIAEEFNEKTGLN---YTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred HHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHHHHH
Confidence 46999999999976543 4999999999999999974
No 63
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=76.63 E-value=3.7 Score=31.84 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 019936 274 ETIQTRVERGSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 274 ~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 301 (333)
..|+.++.+|.|.|.+ |.++|.+.++.
T Consensus 12 ~~i~~~V~sG~Y~s~S-EVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSAS-EVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHH
Confidence 4689999999999999 99999999875
No 64
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=69.44 E-value=4.3 Score=30.64 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=26.5
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
.+|..||.++.... ++..|+.++..|..+|..
T Consensus 27 ~aw~~Ia~~l~~~~-------~~~~~~~~w~~Lr~~y~~ 58 (85)
T PF10545_consen 27 EAWQEIARELGKEF-------SVDDCKKRWKNLRDRYRR 58 (85)
T ss_pred HHHHHHHHHHccch-------hHHHHHHHHHHHHHHHHH
Confidence 47999999996542 678899999999998864
No 65
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=67.36 E-value=6.5 Score=31.45 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 019936 274 ETIQTRVERGSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 274 ~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 301 (333)
.-|+.+|.+|.|.|.+ |+++|.+.++.
T Consensus 15 ~~i~~~V~sG~Y~s~S-EvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSAS-EVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence 3589999999999999 99999887774
No 66
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.21 E-value=8.8 Score=29.11 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 019936 70 RVDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (333)
Q Consensus 70 RVAELrRever~d~sIgsLq~kvk~L~eere~ 101 (333)
||.||-.+|.+-+.+|++++...+.|+++=++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999887554
No 67
>PLN03212 Transcription repressor MYB5; Provisional
Probab=65.38 E-value=3.8 Score=39.58 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHHH
Q 019936 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYRD 39 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~d 39 (333)
.+||..+|..||..+. .| |+..||.||..
T Consensus 41 ~kyG~~nW~~IAk~~g~gR--------T~KQCReRW~N 70 (249)
T PLN03212 41 KKEGEGRWRSLPKRAGLLR--------CGKSCRLRWMN 70 (249)
T ss_pred HHhCcccHHHHHHhhhcCC--------CcchHHHHHHH
Confidence 5799999999998763 34 78999999974
No 68
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=52.88 E-value=5.3 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=13.9
Q ss_pred HhHhhHHHHHHHHhhhhhhhHH
Q 019936 66 LRKVRVDELKRELQRCDLSILS 87 (333)
Q Consensus 66 LRklRVAELrRever~d~sIgs 87 (333)
+.+++|++||+-+...++.+-|
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps 22 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPS 22 (35)
T ss_dssp STT--SHHHHHHHHHHT---SS
T ss_pred CCcCcHHHHHHHHHHcCCCCCC
Confidence 3579999999999988876543
No 69
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=51.01 E-value=16 Score=35.82 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=27.8
Q ss_pred CCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 019936 7 VGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (333)
Q Consensus 7 t~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (333)
..-|.-||.-++-.- .+ -||.-|+.||..|.+||-..
T Consensus 83 ~~~We~va~k~~~~g-~~---rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 83 GPLWEEVARKMAELG-YP---RSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred ccHHHHHHHHHHHhC-CC---CCHHHHHHHHHHHHHHHHHH
Confidence 567999998433221 12 39999999999999999754
No 70
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=49.10 E-value=27 Score=26.63 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=28.3
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhh
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERR 43 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rR 43 (333)
..|..||.+|-+..|. . .|+..|+.+|.+|+++
T Consensus 39 ~~W~~I~~~lN~~~~~--~-Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 39 KAWEEIAEELNALGPG--K-RSWKQLKKKWKNLKSK 71 (78)
T ss_pred HHHHHHHHHHHhcCCC--C-CCHHHHHHHHHHHHHH
Confidence 4699999999998763 3 4999999999999875
No 71
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=47.75 E-value=2.1 Score=46.14 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=59.6
Q ss_pred hcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 019936 258 QESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRN 322 (333)
Q Consensus 258 ~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~A~~L~~ 322 (333)
...|.|+.++|-||=+....+++..|.|.... .|..|+.++|-|+..|+....-++..+..|..
T Consensus 223 ~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~-~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 223 EKWPQGCWIYRPEETVHRADRKFYKQEVFKTS-LYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred ccccceeEeeCCccCccccccchhcccceecc-cccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 68999999999999999999999999999999 99999999999999999999888888877654
No 72
>PLN03091 hypothetical protein; Provisional
Probab=46.47 E-value=12 Score=39.15 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHH
Q 019936 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYR 38 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~ 38 (333)
..||..+|..||..+- .| |+..||.||.
T Consensus 30 ~kyG~~nWs~IAk~~g~gR--------T~KQCRERW~ 58 (459)
T PLN03091 30 TKYGHGCWSSVPKQAGLQR--------CGKSCRLRWI 58 (459)
T ss_pred HHhCcCCHHHHhhhhccCc--------CcchHhHHHH
Confidence 4699999999997653 23 7899999996
No 73
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=45.03 E-value=13 Score=39.22 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.4
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
++|+.||.=|+++ |++.|.+||-.|
T Consensus 299 DdW~kVA~HVgtK--------t~EqCIl~FL~L 323 (531)
T COG5259 299 DDWDKVARHVGTK--------TKEQCILHFLQL 323 (531)
T ss_pred hhHHHHHHHhCCC--------CHHHHHHHHHcC
Confidence 6899999999987 679999999776
No 74
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.76 E-value=85 Score=27.62 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCccchHHHHhHh------hHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 019936 36 KYRDLERRFNDDPQPHNNNNHNVHVPWLEHLRKV------RVDELKRELQRCDLSILSLQLQVKKLEEE 98 (333)
Q Consensus 36 Ky~dL~rRfs~~~~~~~~~~~~~~~~W~eELRkl------RVAELrRever~d~sIgsLq~kvk~L~ee 98 (333)
+-.+|+++|......++ -......+-+.|+|.+ -|-+|..||..-|.-|..|..++..+...
T Consensus 56 ~Ls~LK~~y~~~~~~~~-~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 56 RLSELKRRYRKKQSDPS-PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHcCCCCCC-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999987542111 0012334566787766 58899999999999999999999887654
No 75
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=44.43 E-value=6.2 Score=44.12 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=60.4
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCc--------------c----
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSY--------------S---- 286 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y--------------~---- 286 (333)
.++..-|++||.+|-- +++. +..|.|..+..-|.+|+|++..|.+-.| .
T Consensus 73 hI~kdhll~i~kqlv~-----------~~d~--~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~ 139 (1113)
T KOG0644|consen 73 HIAKDHLLQILKQLVP-----------MLDK--PIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHA 139 (1113)
T ss_pred ccchHHHHHHHHHhcc-----------CcCC--CCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccC
Confidence 3444457777776632 4455 6678899999999999999999997665 2
Q ss_pred ------CcH-----HHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 019936 287 ------ACI-----LTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNL 323 (333)
Q Consensus 287 ------S~~-----~EF~rDl~Lmf~NA~~YN~~~S~~~k~A~~L~~~ 323 (333)
+.. -+...-..+|-.||..++.|+| .++-++.++++
T Consensus 140 ~~~~~~sl~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 140 DQVRGVSLRSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred cccccceeccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHH
Confidence 222 0255667788999999999999 55555555554
No 76
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.45 E-value=32 Score=34.02 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHhhcC
Q 019936 81 CDLSILSLQLQVKKLEEEREK 101 (333)
Q Consensus 81 ~d~sIgsLq~kvk~L~eere~ 101 (333)
+|.-|++|+-|+++|+|+|.-
T Consensus 114 ke~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 114 KENLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999985
No 77
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=40.36 E-value=16 Score=37.75 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=22.1
Q ss_pred hHhHHHhHHHH--------HhhhcCCCCCCCCCCCCCccchHHHHhH
Q 019936 30 PQCCKQKYRDL--------ERRFNDDPQPHNNNNHNVHVPWLEHLRK 68 (333)
Q Consensus 30 p~~Cr~Ky~dL--------~rRfs~~~~~~~~~~~~~~~~W~eELRk 68 (333)
-++|+-||.+| ||||... +++=-+-+..|+-||+
T Consensus 425 CENCreky~~lE~Hi~s~~HrrFAEn-----d~NF~~lD~Lf~l~rr 466 (468)
T COG5067 425 CENCREKYESLEQHIVSEKHRRFAEN-----DLNFEALDSLFELLRR 466 (468)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhc-----ccchhhHHHHHHHhcC
Confidence 48999999998 6788632 1111445667776664
No 78
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.40 E-value=39 Score=32.47 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 019936 68 KVRVDELKRELQRCDLSILSLQLQVKKLEEERE 100 (333)
Q Consensus 68 klRVAELrRever~d~sIgsLq~kvk~L~eere 100 (333)
|.|++||=.|+.+----|.+|+..|++|+.+=-
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999743
No 79
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=38.33 E-value=21 Score=32.03 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.8
Q ss_pred cchHHHHhHhhHHHHHHHH
Q 019936 60 VPWLEHLRKVRVDELKREL 78 (333)
Q Consensus 60 ~~W~eELRklRVAELrRev 78 (333)
+.-|+++|+.|++||+.+.
T Consensus 37 e~~l~~~R~~R~~el~~~~ 55 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKL 55 (175)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999984
No 80
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=37.06 E-value=46 Score=25.93 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=27.9
Q ss_pred chHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 019936 61 PWLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (333)
Q Consensus 61 ~W~eELRklRVAELrRever~d~sIgsLq~kvk~L~eere~ 101 (333)
.-=|+|-=+=|+||- --|+-||..+++|+.|+.+
T Consensus 17 i~~d~LsllsV~El~-------eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 17 IGNDALSLLSVAELE-------ERIALLQAEIERLKAELAK 50 (65)
T ss_pred cchhHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 334568888999984 4599999999999999986
No 81
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.90 E-value=73 Score=23.12 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=28.7
Q ss_pred HHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 019936 65 HLRKVRVDELKRELQRCDLSILSLQLQVKKLEEE 98 (333)
Q Consensus 65 ELRklRVAELrRever~d~sIgsLq~kvk~L~ee 98 (333)
+=+|.++.+|..+|....-.+-.|+.+|..|+.|
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467888899999999888899999999999865
No 82
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.80 E-value=50 Score=30.28 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=33.8
Q ss_pred HHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCC
Q 019936 65 HLRKVRVDELKRELQRCDLSILSLQLQVKKLEEEREKP 102 (333)
Q Consensus 65 ELRklRVAELrRever~d~sIgsLq~kvk~L~eere~~ 102 (333)
.-|+.++++|..+++.....|..|+.+++.++.+|+.+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45778899999999999999999999999999888763
No 83
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=35.66 E-value=21 Score=23.99 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=21.4
Q ss_pred HhHhhHHHHHHHHhhhhhhhH-HHHHHHHHHH
Q 019936 66 LRKVRVDELKRELQRCDLSIL-SLQLQVKKLE 96 (333)
Q Consensus 66 LRklRVAELrRever~d~sIg-sLq~kvk~L~ 96 (333)
|-++.|+|||.++.+..+++. .=+.-|++|.
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~ 32 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLK 32 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 357899999999999998874 3333445554
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.73 E-value=80 Score=24.91 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCccchHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 019936 37 YRDLERRFNDDPQPHNNNNHNVHVPWLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (333)
Q Consensus 37 y~dL~rRfs~~~~~~~~~~~~~~~~W~eELRklRVAELrRever~d~sIgsLq~kvk~L~eere~ 101 (333)
|..|..++... +-=+.-| +..|+||+.+........-.|+...++|+.+++.
T Consensus 6 l~~LE~ki~~a------------veti~~L-q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 6 LEQLEEKIQQA------------VETIALL-QMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHH------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777631 1222222 5679999999998889999999999999998864
No 85
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=30.79 E-value=90 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHhhhhhhhHHHH------HHHHHHHHh
Q 019936 68 KVRVDELKRELQRCDLSILSLQ------LQVKKLEEE 98 (333)
Q Consensus 68 klRVAELrRever~d~sIgsLq------~kvk~L~ee 98 (333)
++++|-||.|-+.+|.+|-.+. +.+.+|+.-
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkK 46 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKK 46 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4899999999999999998763 456666554
No 86
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.83 E-value=40 Score=30.80 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=16.0
Q ss_pred chHHHHhHhhHHHHHHHH
Q 019936 61 PWLEHLRKVRVDELKREL 78 (333)
Q Consensus 61 ~W~eELRklRVAELrRev 78 (333)
.-|+++|+.|++||+++-
T Consensus 59 ~~Le~yR~kRl~el~~~~ 76 (192)
T cd02988 59 RFLEEYRRKRLAEMKALA 76 (192)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 489999999999999863
No 87
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.80 E-value=32 Score=32.44 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCCCCCCChhhHHHHHhhcCCC-CCCCCChHhHHHhH
Q 019936 2 GNVGGVGASMRLSVELQTKTSL-PHLLTTPQCCKQKY 37 (333)
Q Consensus 2 ~~rHGt~~WdsVA~Evq~Rs~~-~~~~~Tp~~Cr~Ky 37 (333)
++---|-+|..+|.|++.+--. ...+.||+.|+.--
T Consensus 5 ~~t~~~~dw~~~~~~l~~~gwa~~~~ll~P~~cr~~A 41 (236)
T COG3826 5 ANTSLTMDWTAIAAELDARGWALTGPLLTPETCRGVA 41 (236)
T ss_pred ccchhhchhHHHHHhhhcccceecccCCCccccchhh
Confidence 3444678999999999987532 22455999998743
No 88
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.98 E-value=1.8e+02 Score=22.34 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=32.3
Q ss_pred chHHHHhHhhHHHH--HHHHhhhhhhhHHHHHHHHHHHHhh
Q 019936 61 PWLEHLRKVRVDEL--KRELQRCDLSILSLQLQVKKLEEER 99 (333)
Q Consensus 61 ~W~eELRklRVAEL--rRever~d~sIgsLq~kvk~L~eer 99 (333)
..-|||+|.+-+-+ -.-|+-++.-+..|+.+|+.|+.+-
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35589999887754 5678889999999999999999874
No 89
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=24.81 E-value=87 Score=25.32 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCccCcHHHHHHHHHHHHHH
Q 019936 273 LETIQTRVERGSYSACILTFYRDLLLLFNN 302 (333)
Q Consensus 273 L~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 302 (333)
..-|..-++.|.|.|.+ +++|+.+..+-=
T Consensus 14 ~~~i~~lV~~G~y~s~S-eviR~alr~l~~ 42 (89)
T COG3609 14 VEFIDELVESGRYKSRS-EVIRAALRLLLE 42 (89)
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHH
Confidence 34688999999999999 999998776643
No 90
>PRK04239 hypothetical protein; Provisional
Probab=23.49 E-value=1.2e+02 Score=26.00 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=15.5
Q ss_pred HHHHhHhhHHHHHHHHhh
Q 019936 63 LEHLRKVRVDELKRELQR 80 (333)
Q Consensus 63 ~eELRklRVAELrRever 80 (333)
||+||+.|++||.+.-..
T Consensus 3 Le~IR~~rl~eLq~q~~~ 20 (110)
T PRK04239 3 LEEIRRRKLEELQKQAQE 20 (110)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 799999999999976653
No 91
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=22.08 E-value=42 Score=24.84 Aligned_cols=16 Identities=56% Similarity=1.198 Sum_probs=13.3
Q ss_pred HhHHHhHHHHH--------hhhcC
Q 019936 31 QCCKQKYRDLE--------RRFND 46 (333)
Q Consensus 31 ~~Cr~Ky~dL~--------rRfs~ 46 (333)
++|+.||.+|. |+|..
T Consensus 9 E~Cr~kfd~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 9 ENCREKYDDLETHLLSEKHRRFAE 32 (49)
T ss_pred ccHhHHHhhHHHHhccHHHHHHHc
Confidence 79999999985 67864
No 92
>smart00338 BRLZ basic region leucin zipper.
Probab=21.76 E-value=1.8e+02 Score=21.66 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=23.2
Q ss_pred hHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 019936 67 RKVRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (333)
Q Consensus 67 RklRVAELrRever~d~sIgsLq~kvk~L~eer 99 (333)
++..+.+|-.+|+....-+-.|+.+|..|+.+-
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777663
No 93
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=20.30 E-value=1.3e+02 Score=24.30 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=21.2
Q ss_pred HHHHhHhhHHHHHHHHhhhhhhhHHHHHHHH
Q 019936 63 LEHLRKVRVDELKRELQRCDLSILSLQLQVK 93 (333)
Q Consensus 63 ~eELRklRVAELrRever~d~sIgsLq~kvk 93 (333)
+=+|| =|-.+-.|+++|-.||--||..|-
T Consensus 22 ~m~l~--svgd~e~eLerCK~sirrLeqevn 50 (79)
T PF09036_consen 22 VMELR--SVGDIEQELERCKASIRRLEQEVN 50 (79)
T ss_dssp ----S--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HhccHHHHHHHHHHHHHHHHHHHH
Confidence 33566 466788999999999999998774
No 94
>PF14502 HTH_41: Helix-turn-helix domain
Probab=20.21 E-value=86 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 019936 69 VRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (333)
Q Consensus 69 lRVAELrRever~d~sIgsLq~kvk~L~eer 99 (333)
.+|.||- +++++|.|+.|.-++-|++..
T Consensus 7 ~tI~e~~---~~~~vs~GtiQ~Alk~Le~~g 34 (48)
T PF14502_consen 7 PTISEYS---EKFGVSRGTIQNALKFLEENG 34 (48)
T ss_pred CCHHHHH---HHhCcchhHHHHHHHHHHHCC
Confidence 3456654 568899999999999999864
Done!