Query 019936
Match_columns 333
No_of_seqs 173 out of 584
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 2.3E-29 7.9E-34 208.9 13.8 103 225-332 12-114 (117)
2 3nxb_A CAT eye syndrome critic 100.0 4.8E-29 1.6E-33 206.7 11.8 101 225-330 15-115 (116)
3 3d7c_A General control of amin 100.0 9.4E-29 3.2E-33 204.1 11.8 99 227-330 8-106 (112)
4 1e6i_A Transcriptional activat 100.0 1.9E-28 6.4E-33 205.4 12.8 100 226-330 13-112 (121)
5 2dat_A Possible global transcr 100.0 2.2E-28 7.4E-33 205.3 12.6 105 224-331 11-119 (123)
6 2d9e_A Peregrin; four-helix bu 100.0 2.5E-28 8.6E-33 204.8 12.3 100 226-330 7-106 (121)
7 2i7k_A Bromodomain-containing 100.0 3.3E-28 1.1E-32 203.4 11.3 100 228-332 10-109 (117)
8 3mb4_A Protein polybromo-1; PB 100.0 4.5E-28 1.5E-32 203.4 11.8 104 225-331 14-121 (124)
9 3p1f_A CREB-binding protein; s 100.0 6.4E-28 2.2E-32 200.8 12.5 105 225-332 10-115 (119)
10 3mb3_A PH-interacting protein; 99.9 6.2E-28 2.1E-32 205.1 12.2 103 225-332 20-123 (135)
11 2ouo_A HUNK1 protein, bromodom 99.9 2.2E-28 7.4E-33 207.5 9.4 104 226-330 22-126 (130)
12 2oss_A HUNK1 protein, bromodom 99.9 5.9E-28 2E-32 204.1 11.7 97 231-330 26-122 (127)
13 3fkm_X Signaling protein; brom 99.9 5.5E-28 1.9E-32 212.9 10.8 103 225-330 20-122 (166)
14 3hme_A Bromodomain-containing 99.9 1.2E-27 4E-32 201.0 11.5 101 225-330 12-112 (123)
15 2grc_A Probable global transcr 99.9 1.2E-27 4.3E-32 202.4 11.5 104 224-330 9-117 (129)
16 3iu5_A Protein polybromo-1; PB 99.9 1.8E-27 6.1E-32 197.5 12.2 103 226-331 5-111 (116)
17 4alg_A Bromodomain-containing 99.9 1.3E-27 4.6E-32 208.2 11.7 97 231-330 37-133 (154)
18 3q2e_A Bromodomain and WD repe 99.9 1.7E-27 5.8E-32 199.7 11.8 100 227-331 11-111 (123)
19 3jvl_A Bromodomain-containing 99.9 1E-27 3.5E-32 199.8 10.0 105 225-330 8-113 (120)
20 3rcw_A Bromodomain-containing 99.9 1.9E-27 6.6E-32 202.0 11.8 101 226-331 13-113 (135)
21 3mqm_A Probable histone-lysine 99.9 2E-27 6.9E-32 199.7 11.5 101 228-331 11-115 (126)
22 3k2j_A Protein polybromo-1; PB 99.9 3.7E-27 1.3E-31 200.3 12.2 103 226-331 17-123 (130)
23 3ljw_A Protein polybromo-1; al 99.9 3.9E-27 1.3E-31 196.7 11.8 102 226-330 8-113 (120)
24 2yyn_A Transcription intermedi 99.9 9E-27 3.1E-31 198.7 11.9 102 224-331 18-121 (135)
25 2ri7_A Nucleosome-remodeling f 99.9 4.8E-27 1.6E-31 205.8 10.2 102 225-331 71-172 (174)
26 3uv4_A Second bromodomain of h 99.9 2.5E-26 8.4E-31 201.3 11.0 97 229-330 28-129 (158)
27 3tlp_A Protein polybromo-1; PB 99.9 1.8E-26 6E-31 199.3 9.7 103 226-331 24-131 (150)
28 3dai_A ATPase family AAA domai 99.9 4.4E-26 1.5E-30 192.9 11.6 98 229-331 13-114 (130)
29 3o36_A Transcription intermedi 99.9 2.6E-25 9E-30 197.1 11.8 102 225-332 80-183 (184)
30 2dkw_A Hypothetical protein KI 99.9 8.2E-25 2.8E-29 186.3 9.3 95 228-332 14-112 (131)
31 3uv5_A Transcription initiatio 99.9 2.4E-24 8.4E-29 201.3 12.1 100 226-330 14-113 (265)
32 3u5n_A E3 ubiquitin-protein li 99.9 6E-24 2E-28 192.0 11.0 102 225-332 80-201 (207)
33 3uv5_A Transcription initiatio 99.9 6.6E-24 2.3E-28 198.3 11.6 95 231-330 141-236 (265)
34 2ro1_A Transcription intermedi 99.9 5.2E-24 1.8E-28 190.9 7.8 96 227-332 77-177 (189)
35 3aad_A Transcription initiatio 99.9 6.3E-24 2.2E-28 201.4 8.4 98 228-330 49-146 (292)
36 3aad_A Transcription initiatio 99.9 2.4E-23 8.1E-28 197.5 10.3 89 237-330 181-269 (292)
37 2r0y_A Chromatin structure-rem 99.9 3.9E-23 1.3E-27 198.1 10.1 87 240-331 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 5.9E-23 2E-27 200.0 10.2 86 241-331 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 1.1E-21 3.9E-26 191.0 6.8 96 230-330 82-178 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.1E-21 7.1E-26 186.1 7.3 96 230-330 32-128 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 1.3E-18 4.4E-23 151.5 11.0 99 225-330 6-108 (147)
42 3lqh_A Histone-lysine N-methyl 99.6 2.3E-15 7.8E-20 135.1 8.0 86 231-332 80-165 (183)
43 2elk_A SPCC24B10.08C protein; 95.4 0.0086 2.9E-07 43.5 2.8 30 3-40 25-55 (58)
44 1w0t_A Telomeric repeat bindin 95.1 0.01 3.5E-07 42.1 2.4 32 3-42 18-51 (53)
45 1x41_A Transcriptional adaptor 94.7 0.024 8.3E-07 41.2 3.4 30 3-40 24-53 (60)
46 3sjm_A Telomeric repeat-bindin 94.4 0.018 6E-07 43.0 2.2 32 3-42 27-60 (64)
47 1guu_A C-MYB, MYB proto-oncoge 93.7 0.029 9.8E-07 39.4 2.1 30 3-40 19-48 (52)
48 1ity_A TRF1; helix-turn-helix, 92.7 0.061 2.1E-06 40.0 2.6 34 3-44 26-61 (69)
49 2d9a_A B-MYB, MYB-related prot 92.6 0.06 2E-06 38.9 2.4 30 3-40 24-53 (60)
50 2yus_A SWI/SNF-related matrix- 92.5 0.048 1.6E-06 42.3 1.9 28 4-40 35-62 (79)
51 2dim_A Cell division cycle 5-l 92.5 0.072 2.4E-06 39.7 2.7 30 3-40 25-54 (70)
52 2ebi_A DNA binding protein GT- 91.8 0.12 4E-06 39.9 3.3 36 8-47 34-69 (86)
53 1gvd_A MYB proto-oncogene prot 91.8 0.053 1.8E-06 38.1 1.2 29 3-39 19-47 (52)
54 2llk_A Cyclin-D-binding MYB-li 91.1 0.096 3.3E-06 40.2 2.1 33 4-46 40-72 (73)
55 2cu7_A KIAA1915 protein; nucle 88.8 0.33 1.1E-05 36.3 3.5 34 4-46 26-59 (72)
56 2ckx_A NGTRF1, telomere bindin 88.4 0.24 8.1E-06 38.8 2.5 39 3-45 16-54 (83)
57 2k9n_A MYB24; R2R3 domain, DNA 88.1 0.27 9.3E-06 39.3 2.7 29 3-39 17-45 (107)
58 2din_A Cell division cycle 5-l 88.0 0.41 1.4E-05 35.1 3.5 32 4-45 26-57 (66)
59 2yum_A ZZZ3 protein, zinc fing 87.9 0.28 9.5E-06 36.8 2.5 33 4-44 25-63 (75)
60 1wgx_A KIAA1903 protein; MYB D 87.7 0.26 9E-06 37.9 2.3 35 5-47 29-63 (73)
61 2k9n_A MYB24; R2R3 domain, DNA 87.3 0.43 1.5E-05 38.1 3.5 33 4-45 70-102 (107)
62 2ltp_A Nuclear receptor corepr 85.7 0.16 5.4E-06 39.9 0.0 35 3-46 32-66 (89)
63 3zqc_A MYB3; transcription-DNA 84.6 0.26 8.9E-06 40.8 0.9 29 3-39 18-46 (131)
64 1gv2_A C-MYB, MYB proto-oncoge 84.2 0.31 1.1E-05 38.5 1.2 30 3-40 20-49 (105)
65 2roh_A RTBP1, telomere binding 84.0 0.59 2E-05 39.2 2.8 40 3-46 47-86 (122)
66 1h89_C C-MYB, MYB proto-oncoge 83.4 0.29 1E-05 41.6 0.7 30 2-39 21-50 (159)
67 2cqr_A RSGI RUH-043, DNAJ homo 83.1 0.27 9.2E-06 37.6 0.3 31 7-45 41-71 (73)
68 3osg_A MYB21; transcription-DN 81.9 0.56 1.9E-05 38.6 1.9 35 4-47 79-113 (126)
69 3osg_A MYB21; transcription-DN 81.4 0.59 2E-05 38.4 1.8 29 3-40 27-55 (126)
70 1h8a_C AMV V-MYB, MYB transfor 80.1 0.88 3E-05 37.3 2.5 29 3-39 43-71 (128)
71 1gv2_A C-MYB, MYB proto-oncoge 79.0 0.61 2.1E-05 36.8 1.1 31 4-43 73-103 (105)
72 2juh_A Telomere binding protei 78.0 0.96 3.3E-05 37.9 2.1 39 3-45 33-71 (121)
73 2cqq_A RSGI RUH-037, DNAJ homo 77.6 1.7 5.8E-05 33.0 3.2 28 8-44 32-59 (72)
74 2aje_A Telomere repeat-binding 77.3 0.69 2.4E-05 37.8 1.0 41 3-47 29-69 (105)
75 2cjj_A Radialis; plant develop 75.8 1.7 5.9E-05 34.6 2.9 30 7-44 31-60 (93)
76 1h89_C C-MYB, MYB proto-oncoge 67.2 2.1 7.3E-05 36.2 1.7 30 3-40 74-103 (159)
77 1zrj_A E1B-55KDA-associated pr 62.5 4.9 0.00017 28.7 2.6 33 66-98 10-43 (50)
78 2eqr_A N-COR1, N-COR, nuclear 59.9 5.2 0.00018 28.9 2.4 30 4-42 29-58 (61)
79 2do1_A Nuclear protein HCC-1; 59.2 4.8 0.00016 29.2 2.1 33 66-98 10-43 (55)
80 2iw5_B Protein corest, REST co 56.2 6.2 0.00021 36.5 2.8 33 4-45 150-182 (235)
81 3zqc_A MYB3; transcription-DNA 55.4 4.2 0.00014 33.4 1.4 35 4-47 71-106 (131)
82 3kxe_C Antitoxin protein PARD- 48.9 13 0.00046 29.1 3.3 30 273-303 15-44 (88)
83 2kvu_A MKL/myocardin-like prot 48.7 8.6 0.0003 29.7 2.1 35 65-99 25-60 (75)
84 1zxa_A CGMP-dependent protein 46.6 21 0.00072 27.0 3.9 33 65-97 21-53 (67)
85 3swk_A Vimentin; cytoskeleton, 43.5 41 0.0014 26.1 5.3 27 72-98 52-78 (86)
86 1h1j_S THO1 protein; SAP domai 41.7 17 0.00057 25.9 2.5 34 65-98 4-38 (51)
87 3ol1_A Vimentin; structural ge 41.6 61 0.0021 26.4 6.4 30 71-100 71-100 (119)
88 3htk_A Structural maintenance 39.3 25 0.00086 24.8 3.2 28 68-95 32-59 (60)
89 1yyb_A Programmed cell death p 36.4 22 0.00074 22.2 2.1 17 61-77 5-21 (27)
90 1t2k_D Cyclic-AMP-dependent tr 34.1 53 0.0018 23.5 4.3 33 67-99 20-52 (61)
91 3nmd_A CGMP dependent protein 29.4 62 0.0021 24.8 4.1 34 63-96 32-67 (72)
92 1jnm_A Proto-oncogene C-JUN; B 29.1 71 0.0024 22.9 4.3 34 67-100 20-53 (62)
93 2l5g_A GPS2 protein, G protein 25.4 37 0.0013 23.0 1.9 20 82-101 14-33 (38)
94 1gmj_A ATPase inhibitor; coile 24.9 97 0.0033 24.3 4.6 35 64-98 40-80 (84)
95 2xag_B REST corepressor 1; ami 24.5 30 0.001 35.0 2.0 33 4-45 397-429 (482)
96 2l5g_B Putative uncharacterize 23.1 1.2E+02 0.004 21.0 4.2 31 71-101 11-41 (42)
97 2jxn_A Uncharacterized protein 23.0 27 0.00091 29.3 1.1 15 61-75 3-17 (127)
98 3s9g_A Protein hexim1; cyclin 23.0 1.9E+02 0.0065 23.4 6.1 52 29-100 31-82 (104)
99 1ci6_A Transcription factor AT 22.4 1.1E+02 0.0038 22.1 4.3 38 62-99 16-53 (63)
100 2rnn_A E3 SUMO-protein ligase 20.8 66 0.0023 26.6 3.1 35 62-96 33-68 (114)
101 2hvu_A PDCD5-like protein; YMR 20.6 17 0.00057 30.2 -0.6 17 61-77 3-19 (116)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=2.3e-29 Score=208.93 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=98.2
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
....+.|..||+.|..|+. +|+|..||+. ..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+
T Consensus 12 ~~~~~~c~~il~~l~~~~~--s~~F~~pv~~--~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~ 86 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHED--AWPFLLPVNL--KLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE-TFALDVRLVFDNCE 86 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTT--CGGGSSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--chhhcCcCCh--hhcCChHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3456779999999999999 9999999999 88999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
.||+++|.+|.+|..|+++|.+.|++.+
T Consensus 87 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 87 TFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754
No 2
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.96 E-value=4.8e-29 Score=206.74 Aligned_cols=101 Identities=15% Similarity=0.341 Sum_probs=97.0
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
....+.|..||+.|+.|+. +|+|..||+. ..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+
T Consensus 15 ~~~~~~~~~il~~l~~~~~--s~~F~~pv~~--~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKD--SWPFLEPVDE--SYAPNYYQIIKAPMDISSMEKKLNGGLYCTKE-EFVNDMKTMFRNCR 89 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTT--CGGGSSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--cHhhcCcCCh--hhccChHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3456789999999999999 9999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
.||+++|.+|.+|..|+++|.+.|+|
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999975
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.96 E-value=9.4e-29 Score=204.06 Aligned_cols=99 Identities=26% Similarity=0.338 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
-...|..||+.|++|+. +++|..||+. .++||||++|++||||+||++||++|.|.++. +|.+||.|||.||+.|
T Consensus 8 l~~~~~~il~~l~~~~~--~~~F~~pvd~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 8 LYTTLKNLLAQIKSHPS--AWPFMEPVKK--SEAPDYYEVIRFPIDLKTMTERLRSRYYVTRK-LFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHSGG--GGGGSSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--chhhcCCCCc--ccccCHHHHccCCcCHHHHHHHHcCCCCcCHH-HHHHHHHHHHHHHHHH
Confidence 34679999999999999 9999999999 89999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 307 FPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 307 N~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
|+++|.+|.+|..|+++|.+.|++
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~ 106 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKE 106 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 4
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=1.9e-28 Score=205.40 Aligned_cols=100 Identities=21% Similarity=0.398 Sum_probs=96.1
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 019936 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 305 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 305 (333)
...+.|..||+.|++|+. +|+|..||+. .++||||++|++||||+||++||++|.|.++. +|.+||.|||+||+.
T Consensus 13 ~~~~~~~~il~~l~~~~~--a~~F~~pvd~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 87 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAA--AWPFLQPVNK--EEVPDYYDFIKEPMDLSTMEIKLESNKYQKME-DFIYDARLVFNNCRM 87 (121)
T ss_dssp TTHHHHHHHHHHHHHSTT--CGGGSSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--chhhCCCCCh--hhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 446789999999999999 9999999999 89999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 306 YFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 306 YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
||+++|.+|++|..|+++|.+.|++
T Consensus 88 yN~~~s~i~~~A~~L~~~f~~~~~~ 112 (121)
T 1e6i_A 88 YNGENTSYYKYANRLEKFFNNKVKE 112 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=205.32 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=97.7
Q ss_pred CccchhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHH
Q 019936 224 TYAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLL 299 (333)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lm 299 (333)
+....+.|..||+.|++|++ .++|+|.+||+. .++||||+||++||||+||++||++|.|.++. +|.+||.||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li 87 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLG-DLEKDVMLL 87 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCT--TTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHH
Confidence 34556779999999999974 369999999998 89999999999999999999999999999999 999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 300 FNNAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 300 f~NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
|+||+.||+++|.+|.+|..|+++|.+.+++.
T Consensus 88 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 88 CHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999998753
No 6
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=204.79 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=94.9
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 019936 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 305 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 305 (333)
+-...|..||+.|++|+. +|+|.+||+. .++||||+||++||||+||++||++|.|.++. +|.+||.|||.||+.
T Consensus 7 pl~~~l~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~ 81 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDT--GNIFSEPVPL--SEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFD-DFEEDFNLIVSNCLK 81 (121)
T ss_dssp HHHHHHHHHHHHHHHHCS--SCSSSSCCCT--TTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCc--cHhhCCcCCc--cccCCHHHHcCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 345679999999999999 9999999999 89999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 306 YFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 306 YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
||+++|.+|++|..|+++|.+.|++
T Consensus 82 yN~~~s~~~~~A~~L~~~~~~~l~~ 106 (121)
T 2d9e_A 82 YNAKDTIFYRAAVRLREQGGAVLRQ 106 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887754
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=3.3e-28 Score=203.35 Aligned_cols=100 Identities=15% Similarity=0.322 Sum_probs=95.5
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
...|..||+.|++++. +++|..||++ ..+||||+||++||||+||++||++|.|.++. +|.+||.|||+||+.||
T Consensus 10 ~~~l~~il~~L~~~~~--~~~F~~PVd~--~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Li~~Na~~yN 84 (117)
T 2i7k_A 10 QEALNQLMRQLQRKDP--SAFFSFPVTD--FIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE-ELKDNFKLMCTNAMIYN 84 (117)
T ss_dssp HHHHHHHHHHHHTSSG--GGTSSSCCCT--TTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHH-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCcc--cHHhcCCCCc--cccCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 4668999999999999 9999999999 89999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 308 PKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
+++|.+|++|..|+++|.+.+...+
T Consensus 85 ~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 85 KPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 8
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.95 E-value=4.5e-28 Score=203.44 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=96.2
Q ss_pred ccchhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLF 300 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf 300 (333)
.+..+.|..||+.|+++++ .++++|.+||+. .++||||+||++||||+||++||++|.|.++. +|..||.|||
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~ 90 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSR--SELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMF 90 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCc--cccCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Confidence 4566789999999999443 238999999999 89999999999999999999999999999999 9999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 301 NNAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 301 ~NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
.||+.||+++|.+|++|..|+++|.+.+++.
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 91 NNACTYNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988763
No 9
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=6.4e-28 Score=200.78 Aligned_cols=105 Identities=23% Similarity=0.373 Sum_probs=96.9
Q ss_pred ccchhhHHHHHHHHHh-CCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIRT-HNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~-hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
....+.|..+|+.|.. |+. +|+|..||++...++||||++|++||||+||++||++|.|.++. +|..||.|||.||
T Consensus 10 ~el~~~l~~~l~~l~~~~~~--s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 86 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPE--SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPW-QYVDDVWLMFNNA 86 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTT--TGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC--CchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHH
Confidence 3445779999999877 788 99999999995448999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
+.||+++|.+|.+|..|+++|.+.|.+.+
T Consensus 87 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 87 WLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987653
No 10
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=6.2e-28 Score=205.08 Aligned_cols=103 Identities=21% Similarity=0.370 Sum_probs=97.2
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
..-.+.|..||+.|..|+. +++|..||+. .++||||++|++||||+||++||++|.|.++. +|..||.|||.||+
T Consensus 20 ~~l~~~~~~il~~l~~~~~--s~~F~~pv~~--~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~ 94 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCED--SEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPM-ELCKDVRLIFSNSK 94 (135)
T ss_dssp STHHHHHHHHHHHHHHSGG--GGGGSSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--ChhhcCCCCh--hhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3445679999999999999 9999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCC-CCHHHHHHHHHHHHHHHHHHhhc
Q 019936 305 VYFPK-ASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 305 ~YN~~-~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
.||++ +|.+|.+|..|+++|.+.|.+.+
T Consensus 95 ~yN~~~~s~i~~~A~~L~~~f~~~~~~~~ 123 (135)
T 3mb3_A 95 AYTPSKRSRIYSMSLRLSAFFEEHISSVL 123 (135)
T ss_dssp HHSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 99999999999999999987643
No 11
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=2.2e-28 Score=207.49 Aligned_cols=104 Identities=17% Similarity=0.320 Sum_probs=95.9
Q ss_pred cchhhHHHHHHHHHhCCCC-CCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 226 AESEPLIRLLDLIRTHNHH-LPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~-~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
...+.|..||+.|..|++. ++|+|..||+....++||||+||++||||+||++||++|.|.++. +|.+||.|||+||+
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ-EFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHH
Confidence 3456799999999998742 489999999985457999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
.||+++|.+|.+|..|+++|.+.|.+
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 126 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAK 126 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 12
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=5.9e-28 Score=204.07 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 019936 231 LIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 310 (333)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 310 (333)
|..||+.|++|+. +|+|..||+.+..++||||+||++||||+||++||++|.|.++. +|.+||.|||+||+.||+++
T Consensus 26 ~~~il~~L~~~~~--a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~ 102 (127)
T 2oss_A 26 LRVVLKTLWKHQF--AWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ-ECIQDFNTMFTNCYIYNKPG 102 (127)
T ss_dssp HHTHHHHHHTSTT--CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCcc--chhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 4568999999999 99999999984468999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 019936 311 SLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 311 S~~~k~A~~L~~~v~k~m~k 330 (333)
|.+|.+|..|+++|.+.|++
T Consensus 103 s~i~~~A~~L~~~f~~~~~~ 122 (127)
T 2oss_A 103 DDIVLMAEALEKLFLQKINE 122 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 13
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=5.5e-28 Score=212.95 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=93.1
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
..-.+.|..||+.|+.|+. +|+|..||++...++||||+||++||||+||++||.+|.|.++. +|..||.|||.||+
T Consensus 20 ~~~~~~~~~il~~L~~~~~--s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEG--GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPS-EFVKDVQLIFDNCS 96 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTT--GGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--ChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3344668999999999999 99999999985468999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
.||+++|.+|.+|..|+++|.+.|.+
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~ 122 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIV 122 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 14
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=201.04 Aligned_cols=101 Identities=14% Similarity=0.271 Sum_probs=96.5
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
.+..+.|..||+.|..|+. +++|..||+. ..+||||++|++||||+||++||++|.|.++. +|.+||.|||.||+
T Consensus 12 ~p~~~~l~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~ 86 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDP--HGFFAFPVTD--AIAPGYSMIIKHPMDFGTMKDKIVANEYKSVT-EFKADFKLMCDNAM 86 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCT--TCSSSSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCc--cHhhcCCCCh--hhccCHHHHCCCCCCHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHH
Confidence 4456789999999999999 9999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
.||+++|.+|++|..|.+.|.+.|.+
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 15
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.95 E-value=1.2e-27 Score=202.40 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=96.9
Q ss_pred CccchhhHHHHHHHHHhCCC-----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHH
Q 019936 224 TYAESEPLIRLLDLIRTHNH-----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLL 298 (333)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~-----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~L 298 (333)
+....+.|..||+.|.+|++ .++++|..||+. ..+||||+||++||||+||++||.+|.|.++. +|.+||.|
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~L 85 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLN-DLEKDVML 85 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHH
Confidence 44556789999999999863 369999999998 89999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 299 LFNNAIVYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 299 mf~NA~~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
||.||+.||+++|.+|.+|..|+++|.+.+++
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 117 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQK 117 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 16
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=197.50 Aligned_cols=103 Identities=30% Similarity=0.355 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 019936 226 AESEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 301 (333)
...+.|..||+.|+++++ .++++|.+||+. .++|+||++|++||||+||++||++|.|.++. +|.+||.|||.
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~ 81 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR--RNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVN-LLTADFQLLFN 81 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG--GGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc--ccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence 345679999999999854 369999999999 99999999999999999999999999999999 99999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 302 NAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 302 NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
||+.||+++|.+|++|..|+++|.+.+++.
T Consensus 82 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l 111 (116)
T 3iu5_A 82 NAKSYYKPDSPEYKAACKLWDLYLRTRNEF 111 (116)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 17
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=1.3e-27 Score=208.21 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=91.8
Q ss_pred HHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 019936 231 LIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 310 (333)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 310 (333)
|..||+.|.+|+. +|+|..||+....++||||+||++||||+||++||++|.|.++. +|.+||.|||.||+.||+++
T Consensus 37 ~~~il~~l~~~~~--a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~YN~~~ 113 (154)
T 4alg_A 37 HKVVMKALWKHQF--AWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAAS-ECMQDFNTMFTNCYIYNKPT 113 (154)
T ss_dssp HHTHHHHHHTSTT--CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCcC--chhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 5567899999999 99999999985458999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 019936 311 SLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 311 S~~~k~A~~L~~~v~k~m~k 330 (333)
|.+|.+|..|+++|.+.|.+
T Consensus 114 s~i~~~A~~L~~~f~~~~~~ 133 (154)
T 4alg_A 114 DDIVLMAQTLEKIFLQKVAS 133 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 18
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=199.69 Aligned_cols=100 Identities=22% Similarity=0.424 Sum_probs=95.2
Q ss_pred chhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 019936 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 306 (333)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 306 (333)
-.+.|..||+.|..|+. +++|.+||+. .++||||++|++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 11 ~~~~c~~il~~l~~~~~--s~~F~~pv~~--~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 11 WKKQCKELVNLIFQCED--SEPFRQPVDL--VEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL-EFCKDIRLIFSNAKAY 85 (123)
T ss_dssp HHHHHHHHHHHHHTSGG--GGGGSSCCCT--TTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--cHhhcCCCCh--hhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 34569999999999999 9999999999 89999999999999999999999999999999 9999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHhh
Q 019936 307 FPK-ASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 307 N~~-~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
|++ +|.+|.+|..|+++|.+.|++.
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~ 111 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKI 111 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 996 9999999999999999998764
No 19
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=1e-27 Score=199.77 Aligned_cols=105 Identities=17% Similarity=0.312 Sum_probs=96.1
Q ss_pred ccchhhHHHHHHHHHhCCCC-CCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIRTHNHH-LPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~-~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
....+.|..||..|..|+.. ++|+|.+||+.....+||||++|++||||+||++||++|.|.++. +|..||.|||.||
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 86 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ-EFGADVRLMFSNC 86 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHH
Confidence 44556789999999988762 589999999994444999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+.||+++|.+|.+|..|+++|.+.|.+
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAK 113 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 20
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=202.04 Aligned_cols=101 Identities=20% Similarity=0.362 Sum_probs=95.7
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 019936 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 305 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 305 (333)
.-...|..||+.|+.|+. +|+|..||+. .++||||++|++||||+||++||++|.|.++. +|.+||.|||.||+.
T Consensus 13 ~l~~~l~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~ 87 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDP--ARIFAQPVSL--KEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH-EFEEDFDLIIDNCMK 87 (135)
T ss_dssp HHHHHHHHHHHHHHHTCT--TCSSSSCCCT--TTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--chhhcCCCCh--hhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 345679999999999999 9999999999 89999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 306 YFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 306 YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
||+++|.+|++|..|+++|.+.+++.
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 88 YNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 21
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=2e-27 Score=199.75 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=94.8
Q ss_pred hhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
.+.|..||+.|++|++ .++|+|.+||+. .++||||++|++||||+||++||++|.|.++. +|..||.|||.||
T Consensus 11 ~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na 87 (126)
T 3mqm_A 11 AQIFKEICDGIISYKDSSRQALAAPLLNLPPK--KKNADYYEKISDPLDLITIEKQILTGYYKTVE-AFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCG--GGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCChhHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 4568999999999864 479999999999 89999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
+.||+++|.+|++|..|+++|.+.+++.
T Consensus 88 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 115 (126)
T 3mqm_A 88 EKYYGRKSPVGRDVCRLRKAYYNARHEA 115 (126)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=3.7e-27 Score=200.28 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=95.7
Q ss_pred cchhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 019936 226 AESEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 301 (333)
-....|..||+.|.++.+ .+++||.+||+. ..+||||++|++||||+||++||++|.|.++. +|.+||.|||.
T Consensus 17 kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~--~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~ 93 (130)
T 3k2j_A 17 NLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSK--KKYPDYYQQIKMPISLQQIRTKLKNQEYETLD-HLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCccHhhcCCCCh--hhCccHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHH
Confidence 345678999999998765 479999999999 99999999999999999999999999999999 99999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 302 NAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 302 NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
||+.||+++|.+|++|..|+++|.+.+++.
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988753
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=3.9e-27 Score=196.69 Aligned_cols=102 Identities=24% Similarity=0.355 Sum_probs=95.5
Q ss_pred cchhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 019936 226 AESEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 301 (333)
...+.|..||+.|.++++ .++++|.+||+. .++||||+||++||||+||++||++|.|.++. +|..||.|||.
T Consensus 8 ~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~ 84 (120)
T 3ljw_A 8 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSK--VQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIH-AMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCc--ccCCChHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHH
Confidence 344668999999998766 479999999999 99999999999999999999999999999999 99999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 302 NAIVYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 302 NA~~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
||+.||+++|.+|++|..|+++|.+.+++
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875
No 24
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=9e-27 Score=198.68 Aligned_cols=102 Identities=24% Similarity=0.338 Sum_probs=95.4
Q ss_pred CccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhC--CCccCcHHHHHHHHHHHHH
Q 019936 224 TYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVER--GSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~--g~Y~S~~~EF~rDl~Lmf~ 301 (333)
.....+.|..||..|+.|+. +|+|..||+. ++||||+||++||||+||++||++ |.|.++. +|.+||.|||+
T Consensus 18 ~p~~~~~c~~il~~L~~~~~--s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~-ef~~Dv~Lif~ 91 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEM--SLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQ 91 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGG--GGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcc--chhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHH-HHHHHHHHHHH
Confidence 34455779999999999999 9999999987 699999999999999999999998 5999999 99999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 302 NAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 302 NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
||++||+++|.+|.+|..|+++|.+.|++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 121 (135)
T 2yyn_A 92 NCAEFNEPDSEVANAGIKLENYFEELLKNL 121 (135)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=4.8e-27 Score=205.84 Aligned_cols=102 Identities=24% Similarity=0.385 Sum_probs=96.8
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 304 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 304 (333)
....+.|..||+.|+.|+. +++|..||+. ..+|+||++|++||||+||++||++|.|.++. +|.+||.|||.||+
T Consensus 71 ~~~~~~l~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKM--AWPFLEPVDP--NDAPDYYGVIKEPMDLATMEERVQRRYYEKLT-EFVADMTKIFDNCR 145 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGG--GTTTSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh--hhhhhcCCCc--ccCCchHHHhCCcCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHH
Confidence 3455679999999999999 9999999999 89999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 305 VYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 305 ~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
.||+++|.+|++|..|+++|.++|++.
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998653
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.93 E-value=2.5e-26 Score=201.27 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=89.1
Q ss_pred hhHHHHHHHH-----HhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 229 EPLIRLLDLI-----RTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 229 q~L~~iL~~L-----~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
-.|..||+.| +.|+. +|||..||+. ..+||||+||++||||+||++||.+|.|.++. +|.+||.|||.||
T Consensus 28 ~~l~~iL~~i~~~kl~~~~~--s~~F~~PVd~--~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na 102 (158)
T 3uv4_A 28 VAFSFILDNIVTQKMMAVPD--SWPFHHPVNK--KFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANS 102 (158)
T ss_dssp HHHHHHHHHHHHHTTTTSTT--CGGGTSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC--chhhcCcCCh--hhcccHHHHcCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 3466666654 55788 9999999999 89999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 304 IVYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 304 ~~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+.||+++|.+|++|..|.++|.+.|++
T Consensus 103 ~~yN~~~s~i~~~A~~L~~~~~~~l~e 129 (158)
T 3uv4_A 103 VKYNGPESQYTKTAQEIVNVCYQTLTE 129 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=199.27 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=94.8
Q ss_pred cchhhHHHHHHHHHhCCC-----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHH
Q 019936 226 AESEPLIRLLDLIRTHNH-----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLF 300 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~-----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf 300 (333)
...+.|..||+.|.++.. .++++|..||+. .++||||+||++||||+||++||++|.|.++. +|..||.|||
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~ 100 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSK--KDYPDYYKIILEPMDLKIIEHNIRNDKYAGEE-GMIEDMKLMF 100 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCch--hhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHH
Confidence 446778888888887653 369999999999 99999999999999999999999999999999 9999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019936 301 NNAIVYFPKASLESEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 301 ~NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~ 331 (333)
.||+.||+++|.+|.+|..|+++|.+.+++.
T Consensus 101 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 131 (150)
T 3tlp_A 101 RNARHYNEEGSQVYNDAHILEKLLKEKRKEL 131 (150)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998753
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.93 E-value=4.4e-26 Score=192.91 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 019936 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
..|..+|+.|..|+. +++|..||+. ..+||||++|++||||+||++||++|.|.++. +|.+||.|||.||+.||+
T Consensus 13 ~~l~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~ 87 (130)
T 3dai_A 13 IFLRNVTHRLAIDKR--FRVFTKPVDP--DEVPDYVTVIKQPMDLSSVISKIDLHKYLTVK-DYLRDIDLICSNALEYNP 87 (130)
T ss_dssp HHHHHHHHHHHTSGG--GGGGSSCCCT--TTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCc--cHhhcCCCCh--hhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 458899999999999 9999999999 89999999999999999999999999999999 999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHHHHhh
Q 019936 309 KASLE----SEAAHQLRNLVSNEIKRT 331 (333)
Q Consensus 309 ~~S~~----~k~A~~L~~~v~k~m~k~ 331 (333)
++|++ +..|..|++.+...+++.
T Consensus 88 ~~s~~~~~i~~~A~~L~~~~~~~i~~e 114 (130)
T 3dai_A 88 DRDPGDRLIRHRACALRDTAYAIIKEE 114 (130)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 677888888887777643
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=2.6e-25 Score=197.08 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=95.5
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhC--CCccCcHHHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVER--GSYSACILTFYRDLLLLFNN 302 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~--g~Y~S~~~EF~rDl~Lmf~N 302 (333)
......|..||..|+.|+. +++|..||+. ++|+||+||++||||+||++||++ |.|.++. +|.+||.|||.|
T Consensus 80 ~~~~~~c~~il~~l~~~~~--s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~-ef~~Dv~li~~N 153 (184)
T 3o36_A 80 PIDKRKCERLLLFLYCHEM--SLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQN 153 (184)
T ss_dssp HHHHHHHHHHHHHHHHSTT--CHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchh--hhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHH
Confidence 4445679999999999999 9999999986 489999999999999999999998 7999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 303 AIVYFPKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 303 A~~YN~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
|+.||+++|.+|++|..|+++|.+.|++.+
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998754
No 30
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=8.2e-25 Score=186.29 Aligned_cols=95 Identities=21% Similarity=0.366 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
...|..||+.|+.|+. +++|..| +||||+||++||||+||++||.+|.|.++. +|..||.|||+||+.||
T Consensus 14 ~~~~~~il~~l~~~~~--~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN 83 (131)
T 2dkw_A 14 RLFLRDVTKRLATDKR--FNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAK-DFLKDIDLICSNALEYN 83 (131)
T ss_dssp HHHHHHHHHHHHHSGG--GCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSH-HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCcc--chhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3458899999999999 9999999 899999999999999999999999999999 99999999999999999
Q ss_pred CCCCHH----HHHHHHHHHHHHHHHHhhc
Q 019936 308 PKASLE----SEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 308 ~~~S~~----~k~A~~L~~~v~k~m~k~~ 332 (333)
+++|++ +..|..|++.+...|...|
T Consensus 84 ~~~s~~~~~i~~~A~~L~~~~~~~l~~~l 112 (131)
T 2dkw_A 84 PDKDPGDKIIRHRACTLKDTAHAIIAAEL 112 (131)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999965 6789999999888876544
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.91 E-value=2.4e-24 Score=201.26 Aligned_cols=100 Identities=17% Similarity=0.310 Sum_probs=95.7
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 019936 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 305 (333)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 305 (333)
.-...|..||+.|+.|+. +|+|..||+. ..+||||++|++||||+||++||.+|.|.++. +|..||.|||.||+.
T Consensus 14 ~l~~~l~~il~~l~~~~~--~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~ 88 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPN--TYPFHTPVNA--KVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSAT 88 (265)
T ss_dssp HHHHHHHHHHHHHHTSTT--CGGGTSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--chhhhCCCCh--hhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhhhh
Confidence 456679999999999999 9999999999 88999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 306 YFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 306 YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
||+++|.+|.+|..|.++|.+.|++
T Consensus 89 yN~~~s~i~~~A~~l~~~~~~~~~~ 113 (265)
T 3uv5_A 89 YNGPKHSLTQISQSMLDLCDEKLKE 113 (265)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988865
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=6e-24 Score=191.96 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=95.1
Q ss_pred ccchhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhC---CCccCcHHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVER---GSYSACILTFYRDLLLLFN 301 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~---g~Y~S~~~EF~rDl~Lmf~ 301 (333)
......|..||..|..|+. +++|..||+. ++|+||+||++||||+||++||++ |.|.++. +|.+||.|||.
T Consensus 80 ~~~~~~c~~il~~l~~~~~--s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~-~f~~Dv~li~~ 153 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHEL--SIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD-DFVADVRLIFK 153 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTT--CGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc--hhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHH-HHHHHHHHHHH
Confidence 3445668999999999999 9999999986 699999999999999999999997 7999999 99999999999
Q ss_pred HHhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 302 NAIVYFP-----------------KASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 302 NA~~YN~-----------------~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
||+.||+ +++.++++|..|+.+|.++|++..
T Consensus 154 Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 154 NCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 999999999999999999998753
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.6e-24 Score=198.33 Aligned_cols=95 Identities=18% Similarity=0.315 Sum_probs=87.8
Q ss_pred HHHHHH-HHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 019936 231 LIRLLD-LIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 309 (333)
Q Consensus 231 L~~iL~-~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 309 (333)
|..++. .|..|+. +|+|..||+. ..+||||++|++||||+||++||++|.|.++. +|.+||.|||.||+.||++
T Consensus 141 l~~i~~~~l~~~~~--~~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~lif~Na~~yN~~ 215 (265)
T 3uv5_A 141 LDNIVTQKMMAVPD--SWPFHHPVNK--KFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGP 215 (265)
T ss_dssp HHHHHHHTTTTSTT--CGGGTSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhhhh--hHHHhCCCCh--hHhCcHHHHhCCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 334443 3778888 9999999999 89999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 019936 310 ASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 310 ~S~~~k~A~~L~~~v~k~m~k 330 (333)
+|.+|.+|..|.++|.+.|++
T Consensus 216 ~s~~~~~A~~l~~~~~~~~~~ 236 (265)
T 3uv5_A 216 ESQYTKTAQEIVNVCYQTLTE 236 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=5.2e-24 Score=190.94 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=88.9
Q ss_pred chhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhc--cCCCHHHHHHHHhCC---CccCcHHHHHHHHHHHHH
Q 019936 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVR--QHVDLETIQTRVERG---SYSACILTFYRDLLLLFN 301 (333)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk--~PMDL~TIk~KL~~g---~Y~S~~~EF~rDl~Lmf~ 301 (333)
....|..||+.|..|+. +|||.+||+ |+||+||+ +||||+||++||++| .|.++. +|.+||.|||+
T Consensus 77 ~~~~c~~iL~~l~~~~~--s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~-eF~~Dv~Lif~ 147 (189)
T 2ro1_A 77 NQRKCERVLLALFCHEP--CRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQ-EFAQDVGRMFK 147 (189)
T ss_dssp HHHHHHHHHHHHHHSTT--HHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCcc--chhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHH-HHHHHHHHHHH
Confidence 34568999999999999 999999998 56999998 899999999999999 999999 99999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 019936 302 NAIVYFPKASLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 302 NA~~YN~~~S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
||++|| +++.+|.+|..|+++|.++|++..
T Consensus 148 N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 148 QFNKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 588889999999999999997753
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=6.3e-24 Score=201.44 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 019936 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 307 (333)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 307 (333)
+..|..||+.|+.|+. +|+|..||+. ..+||||+||++||||+||++||++|.|.+.. +|..||.|||+||+.||
T Consensus 49 ~~~~~~il~~l~~~~~--a~~F~~pV~~--~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 49 SSILESIINDMRDLPN--TYPFHTPVNA--KVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHSSSTT--CGGGSSSCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--chhhcCCCCc--hhcccHHHHcCCcCCHHHHHHHhhCCCcCCHH-HHHHHHHHHHHHHHHHc
Confidence 5668999999999999 9999999999 88999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 019936 308 PKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 308 ~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+++|.+|.+|..|.++|.+.+++
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGG
T ss_pred CCchHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999998876653
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=197.52 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=85.0
Q ss_pred HHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q 019936 237 LIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEA 316 (333)
Q Consensus 237 ~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~ 316 (333)
.|+.|+. +|+|..||+. ..+||||+||++||||+||++||.+|.|.++. +|..||.|||.||+.||+++|.+|.+
T Consensus 181 ~l~~~~~--s~~F~~pvd~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~i~~~ 255 (292)
T 3aad_A 181 KMMAVPD--SWPFHHPVNK--KFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKT 255 (292)
T ss_dssp TGGGSTT--CGGGTSCCCT--TTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred hhhcCcc--hhHHHhcccc--cccccHHHHcCCcCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3678888 9999999999 89999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 019936 317 AHQLRNLVSNEIKR 330 (333)
Q Consensus 317 A~~L~~~v~k~m~k 330 (333)
|..|+++|.+.|.+
T Consensus 256 A~~L~~~~~~~~~~ 269 (292)
T 3aad_A 256 AQEIVNVCYQTLTE 269 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.88 E-value=3.9e-23 Score=198.09 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=83.3
Q ss_pred hCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 019936 240 THNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQ 319 (333)
Q Consensus 240 ~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~A~~ 319 (333)
.|+. +|+|.+||+. .++||||+||++||||+||++||++|.|.++. +|.+||.|||.||+.||+++|.+|.+|..
T Consensus 177 ~~~~--s~~F~~pvd~--~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 251 (311)
T 2r0y_A 177 KVKL--SEPFMELVDK--DELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATT 251 (311)
T ss_dssp SSCT--TGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCcc--HHHHhCCCCh--hhcccHHHHhCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4666 9999999999 89999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 019936 320 LRNLVSNEIKRT 331 (333)
Q Consensus 320 L~~~v~k~m~k~ 331 (333)
|+++|.+.|++.
T Consensus 252 L~~~f~~~~~~~ 263 (311)
T 2r0y_A 252 LTNYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.88 E-value=5.9e-23 Score=200.01 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=82.6
Q ss_pred CCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 019936 241 HNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQL 320 (333)
Q Consensus 241 hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~k~A~~L 320 (333)
|+. +|+|.+||+. .++||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+++|.+|.+|..|
T Consensus 228 ~~~--s~~F~~pvd~--~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L 302 (361)
T 2r10_A 228 VKL--SEPFMELVDK--DELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTL 302 (361)
T ss_dssp SCT--TGGGSSCCCT--TTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred Ccc--hhcccCCCCh--hhcccHHHHhcCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 556 9999999999 89999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 019936 321 RNLVSNEIKRT 331 (333)
Q Consensus 321 ~~~v~k~m~k~ 331 (333)
+++|.+.|++.
T Consensus 303 ~~~f~~~~~~~ 313 (361)
T 2r10_A 303 TNYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=1.1e-21 Score=190.98 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCcc-CcHHHHHHHHHHHHHHHhhhCC
Q 019936 230 PLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYS-ACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~-S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
.|..+|+.|.+....++++|.+||+. .++||||+||++||||+||++|| +.|. ++. +|..||.|||+||+.||.
T Consensus 82 ~~~~~l~~l~~~~~~~~~~F~~p~~~--~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~-~f~~D~~li~~Na~~yN~ 156 (361)
T 2r10_A 82 FISFTLDVLIDKYKDIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNE 156 (361)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSCCCT--TTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHH-HHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHcCCcccHHhcCCCCc--ccCCChHhhcCCCcCHHHHHHHh--hccCCCHH-HHHHHHHHHHHHHhhcCC
Confidence 45667777765433358999999999 99999999999999999999999 5555 789 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 019936 309 KASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~v~k~m~k 330 (333)
++|.+|++|..|+++|.++|.+
T Consensus 157 ~~s~i~~~a~~l~~~~~~~~~k 178 (361)
T 2r10_A 157 YDSLIVKNSMQVVMLIEFEVLK 178 (361)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=2.1e-21 Score=186.12 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCcc-CcHHHHHHHHHHHHHHHhhhCC
Q 019936 230 PLIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYS-ACILTFYRDLLLLFNNAIVYFP 308 (333)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~-S~~~EF~rDl~Lmf~NA~~YN~ 308 (333)
.+..+|+.+.+.-..++++|.+||+. ..+||||+||++||||+||++|| +.|. ++. +|..||.|||+||+.||+
T Consensus 32 ~~~~~L~~~~~~~r~~~~~F~~p~~~--~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~-~f~~D~~li~~Na~~yN~ 106 (311)
T 2r0y_A 32 FISFTLDVLIDKYKDIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNE 106 (311)
T ss_dssp HHHHHHHHHHHHSHHHHGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCchhHHhcCCCCc--ccCCChHHHcCCCCCHHHHHHHH--hcccCCHH-HHHHHHHHHHHHHHHccC
Confidence 34456666665332359999999999 99999999999999999999999 5555 899 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 019936 309 KASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 309 ~~S~~~k~A~~L~~~v~k~m~k 330 (333)
++|.+|++|..|+++|.++|.+
T Consensus 107 ~~s~i~~~A~~l~~~~~~~~~k 128 (311)
T 2r0y_A 107 YDSLIVKNSMQVVMLIEFEVLK 128 (311)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=151.54 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=90.5
Q ss_pred ccchhhHHHHHHHHHhCCC----CCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHH
Q 019936 225 YAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLF 300 (333)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf 300 (333)
..-.+.|..||+.|.+|++ .++.+|.+.++. . |+||. ++||||.+|++||+.|.|.+++ +|..||.|||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk--~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld-~f~~D~~lmf 78 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAV--D--PNFPN--KPPLTFDIIRKNVENNRYRRLD-LFQEHMFEVL 78 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSS--C--TTSTT--SCCCCHHHHHHHHHTTCCCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCC--C--ccccC--CCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHH
Confidence 3445668999999999987 379999999887 4 89998 9999999999999999999999 9999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 019936 301 NNAIVYFPKASLESEAAHQLRNLVSNEIKR 330 (333)
Q Consensus 301 ~NA~~YN~~~S~~~k~A~~L~~~v~k~m~k 330 (333)
+||..||.++|.+|..|..|+++|.+...+
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~e 108 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDE 108 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.58 E-value=2.3e-15 Score=135.05 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCCCCCccccccCcchhhcCchhHhhhccCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 019936 231 LIRLLDLIRTHNHHLPSLFERRLKSQVQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 310 (333)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~~~e~pdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 310 (333)
|..||+.|..|+. +|+|.++. ++.||||.||++||++|.|.++. +|..||.|||.||+.||.++
T Consensus 80 l~~vl~~L~~~~~--s~~~~~y~-------------~k~PmDL~~i~kKl~~~~Y~s~~-eF~~Dv~lIf~n~~~~~~~~ 143 (183)
T 3lqh_A 80 LKQVLTALLNSRT--TSHLLRYR-------------QQQPLDLEGVKRKMDQGNYTSVL-EFSDDIVKIIQAAINSDGGQ 143 (183)
T ss_dssp HHHHHHHHHTCHH--HHHHHTCC-------------C--CCSHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhccc--cHhhhhhh-------------hcCCccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHhhccCCC
Confidence 7889999999999 99998752 48999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhc
Q 019936 311 SLESEAAHQLRNLVSNEIKRTK 332 (333)
Q Consensus 311 S~~~k~A~~L~~~v~k~m~k~~ 332 (333)
+.+.+++..|+.+|.+.|++++
T Consensus 144 ~e~~~ag~~l~~~f~~~l~~vf 165 (183)
T 3lqh_A 144 PEIKKANSMVKSFFIRQMERVF 165 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHC
Confidence 9999999999999999998864
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=95.42 E-value=0.0086 Score=43.54 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||..+|..||..|. .| |+..|+.||..+
T Consensus 25 ~~~G~~~W~~IA~~~~~~R--------t~~qcr~r~~~~ 55 (58)
T 2elk_A 25 ETLGLGNWADIADYVGNAR--------TKEECRDHYLKT 55 (58)
T ss_dssp HHTTTTCHHHHHHHHCSSC--------CHHHHHHHHHHH
T ss_pred HHHCcCCHHHHHHHHCCCC--------CHHHHHHHHHHH
Confidence 3699999999999998 67 689999999753
No 44
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.12 E-value=0.01 Score=42.08 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=27.2
Q ss_pred CCCCCCChhhHHHHHh--hcCCCCCCCCChHhHHHhHHHHHh
Q 019936 3 NVGGVGASMRLSVELQ--TKTSLPHLLTTPQCCKQKYRDLER 42 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq--~Rs~~~~~~~Tp~~Cr~Ky~dL~r 42 (333)
..||+..|..||..+. .| |+..|+.||+.|.+
T Consensus 18 ~~~G~~~W~~Ia~~~~~~~R--------t~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 18 RKYGEGNWSKILLHYKFNNR--------TSVMLKDRWRTMKK 51 (53)
T ss_dssp HHHCTTCHHHHHHHSCCSSC--------CHHHHHHHHHHHHT
T ss_pred HHHCcCCHHHHHHHcCCCCC--------CHHHHHHHHHHHHc
Confidence 4689999999999985 33 78999999998865
No 45
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.67 E-value=0.024 Score=41.24 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||...|..||..|..| |+..|+.||...
T Consensus 24 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~r~~~~ 53 (60)
T 1x41_A 24 MDCGFGNWQDVANQMCTK--------TKEECEKHYMKY 53 (60)
T ss_dssp HHTCTTCHHHHHHHHTTS--------CHHHHHHHHHHH
T ss_pred HHHCcCcHHHHHHHhCCC--------CHHHHHHHHHHH
Confidence 358999999999999776 689999999753
No 46
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=94.41 E-value=0.018 Score=42.96 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCCCCCChhhHHHHHh--hcCCCCCCCCChHhHHHhHHHHHh
Q 019936 3 NVGGVGASMRLSVELQ--TKTSLPHLLTTPQCCKQKYRDLER 42 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq--~Rs~~~~~~~Tp~~Cr~Ky~dL~r 42 (333)
.+||+.+|..||..+- .| |+..|+.||+-|.+
T Consensus 27 ~~~G~~~W~~Ia~~~~~~~R--------t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 27 QKYGEGNWAAISKNYPFVNR--------TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHCTTCHHHHHHHSCCSSC--------CHHHHHHHHHHHHH
T ss_pred HccCCCchHHHHhhcCCCCC--------CHHHHHHHHHHHhc
Confidence 4699999999998752 33 88999999998875
No 47
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=93.72 E-value=0.029 Score=39.38 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||...|..||..|..| |+..|+.||..+
T Consensus 19 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~Rw~~~ 48 (52)
T 1guu_A 19 EQNGTDDWKVIANYLPNR--------TDVQCQHRWQKV 48 (52)
T ss_dssp HHHCSSCHHHHHHTSTTC--------CHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHcCCC--------CHHHHHHHHHHH
Confidence 358999999999988655 789999999865
No 48
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=92.68 E-value=0.061 Score=40.04 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=28.2
Q ss_pred CCCCCCChhhHHHHHh--hcCCCCCCCCChHhHHHhHHHHHhhh
Q 019936 3 NVGGVGASMRLSVELQ--TKTSLPHLLTTPQCCKQKYRDLERRF 44 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq--~Rs~~~~~~~Tp~~Cr~Ky~dL~rRf 44 (333)
..||+..|..||..|. .| |+..|+.||+.+-+.-
T Consensus 26 ~~~G~~~W~~Ia~~~~~~~R--------t~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 26 RKYGEGNWSKILLHYKFNNR--------TSVMLKDRWRTMKKLK 61 (69)
T ss_dssp HHHCSSCHHHHHHHSCCSSC--------CHHHHHHHHHHHHHTS
T ss_pred HHHCCCcHHHHHHHcCcCCC--------CHHHHHHHHHHHcCCC
Confidence 3689999999999985 33 7899999999886654
No 49
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=92.61 E-value=0.06 Score=38.88 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||+..|..||.-|..| |+..|+.||..+
T Consensus 24 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~Rw~~~ 53 (60)
T 2d9a_A 24 RQFGQQDWKFLASHFPNR--------TDQQCQYRWLRV 53 (60)
T ss_dssp HHTCTTCHHHHHHHCSSS--------CHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHccCC--------CHHHHHHHHHHH
Confidence 368999999999998655 789999999864
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=92.53 E-value=0.048 Score=42.27 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
.|| .+|..||..|.+| |+..|+.+|..|
T Consensus 35 ~~G-~~W~~IA~~v~~R--------T~~qcr~r~~~~ 62 (79)
T 2yus_A 35 MYK-DDWNKVSEHVGSR--------TQDECILHFLRL 62 (79)
T ss_dssp HSS-SCHHHHHHHHSSC--------CHHHHHHHHTTS
T ss_pred HhC-CCHHHHHHHcCCC--------CHHHHHHHHHHh
Confidence 588 8999999999877 689999999754
No 51
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.46 E-value=0.072 Score=39.68 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||+..|..||..|..| |+..|+.||...
T Consensus 25 ~~~G~~~W~~Ia~~l~~R--------t~~qcr~Rw~~~ 54 (70)
T 2dim_A 25 MKYGKNQWSRIASLLHRK--------SAKQCKARWYEW 54 (70)
T ss_dssp HHTCSSCHHHHHHHSTTC--------CHHHHHHHHHHT
T ss_pred HHHCcCCHHHHHHHhcCC--------CHHHHHHHHHHH
Confidence 368999999999998765 689999999763
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=91.78 E-value=0.12 Score=39.93 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.8
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (333)
.-|..||..|+.+-- ..||.-|+.||..|+++|-.-
T Consensus 34 ~~W~~Ia~~m~~~G~----~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 34 HLWEQISSKMREKGF----DRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHH
Confidence 469999999998753 249999999999999999753
No 53
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=91.75 E-value=0.053 Score=38.06 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (333)
..||..+|..||.-|..| |+..|+.||..
T Consensus 19 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~Rw~~ 47 (52)
T 1gvd_A 19 QKYGPKRWSVIAKHLKGR--------IGKQCRERWHN 47 (52)
T ss_dssp HHHCTTCHHHHHTTSTTC--------CHHHHHHHHHH
T ss_pred HHHCcChHHHHHHHcCCC--------CHHHHHHHHHH
Confidence 358999999999887655 68999999975
No 54
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=91.10 E-value=0.096 Score=40.19 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.0
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
.||.. |..||..| .| |+..|+.||+-|++....
T Consensus 40 ~~G~k-W~~IA~~l-gR--------t~~q~knRw~~L~~~~~~ 72 (73)
T 2llk_A 40 KHGND-WATIGAAL-GR--------SASSVKDRCRLMKDTCNT 72 (73)
T ss_dssp HHSSC-HHHHHHHH-TS--------CHHHHHHHHHHCSCCCSC
T ss_pred HHCCC-HHHHHHHh-CC--------CHHHHHHHHHHHHHHccC
Confidence 47876 99999999 88 579999999999987653
No 55
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=88.83 E-value=0.33 Score=36.30 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=28.7
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
.||. .|..||.-|..| |+..|+.+|..+-++..-
T Consensus 26 ~~G~-~W~~Ia~~~~~R--------t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 26 KFGR-RWTKISKLIGSR--------TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HTCS-CHHHHHHHHSSS--------CHHHHHHHHHHHHHHHSC
T ss_pred HHCc-CHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHh
Confidence 5788 999999999887 679999999988777654
No 56
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=88.45 E-value=0.24 Score=38.82 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=28.1
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
.+||.+.|-.||..-- ..++ . .|+..|+.||+-|.++=+
T Consensus 16 ~k~G~g~W~~I~~~~~--~~~~-~-RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 16 EHLGTGRWRDVKMRAF--DNAD-H-RTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp HHHCSSCHHHHHHHHC--TTCT-T-SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHhhc--cccC-C-CCHHHHHHHHHHHHHhcc
Confidence 4699999999998521 1111 2 389999999999887544
No 57
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=88.07 E-value=0.27 Score=39.28 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=24.9
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (333)
..||+.+|..||..|-.| |+..|+.||..
T Consensus 17 ~~~g~~~W~~Ia~~~~~R--------t~~qcr~Rw~~ 45 (107)
T 2k9n_A 17 MRYGAKDWIRISQLMITR--------NPRQCRERWNN 45 (107)
T ss_dssp HHHCSSCHHHHHHHTTTS--------CHHHHHHHHHH
T ss_pred HHHCCCCHHHHhhhcCCC--------CHHHHHHHHHH
Confidence 468999999999998766 68999999975
No 58
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.02 E-value=0.41 Score=35.06 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
.||. .|..||. +..| |+..|+.||..+-+.--
T Consensus 26 ~~g~-~W~~Ia~-~~gR--------t~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 26 LMPT-QWRTIAP-IIGR--------TAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp HCTT-CHHHHHH-HHSS--------CHHHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHhc-ccCc--------CHHHHHHHHHHHhChHh
Confidence 4787 9999999 7665 78999999998866543
No 59
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.88 E-value=0.28 Score=36.82 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=25.9
Q ss_pred CCCC-----CChhhHHHHHhhcCCCCCCCCChHhHHHhH-HHHHhhh
Q 019936 4 VGGV-----GASMRLSVELQTKTSLPHLLTTPQCCKQKY-RDLERRF 44 (333)
Q Consensus 4 rHGt-----~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky-~dL~rRf 44 (333)
.||. ..|..||..|..| |+..|+.|| ..|.+.-
T Consensus 25 ~~g~~~~~~~~W~~IA~~~~~R--------t~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 25 KYPPEEVESRRWQKIADELGNR--------TAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HSCCCSCHHHHHHHHHHHHSSS--------CHHHHHHHHHHHHGGGS
T ss_pred HhCCCCCCcccHHHHHHHhCCC--------CHHHHHHHHHHHHHHHH
Confidence 4676 7899999999877 679999999 5555433
No 60
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.65 E-value=0.26 Score=37.93 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 019936 5 GGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (333)
Q Consensus 5 HGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (333)
+..+.|+.||+=|-.| |++.|+.+|..|++=|..+
T Consensus 29 ~tp~rWe~IA~~V~gK--------T~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 29 HKPGFWSEVAAAVGSR--------SPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSSSHHHHHHHHTTTS--------CHHHHHHHHHHSSSSSCCC
T ss_pred CCccHHHHHHHHcCCC--------CHHHHHHHHHHHHhccccc
Confidence 4456799999998877 6899999999998887655
No 61
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=87.33 E-value=0.43 Score=38.09 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
.||. .|..||..|..| |+..|+.||..|.++..
T Consensus 70 ~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 70 EYGP-KWNKISKFLKNR--------SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HTCS-CHHHHHHHHSSS--------CHHHHHHHHHHHHHHHH
T ss_pred HhCc-CHHHHHHHCCCC--------CHHHHHHHHHHHHhhHH
Confidence 4776 799999998766 67999999999999864
No 62
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=85.72 E-value=0.16 Score=39.90 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=29.8
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
..||. .|..||.-|..| |+..|+.+|.-+.+|+.-
T Consensus 32 ~~~G~-~W~~IA~~l~gR--------t~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 32 LEHGR-NWSAIARMVGSK--------TVSQCKNFYFNYKKRQNL 66 (89)
Confidence 46888 799999999888 568999999999988864
No 63
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=84.65 E-value=0.26 Score=40.78 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (333)
..||+.+|..||..|..| |+..|+.||..
T Consensus 18 ~~~g~~~W~~Ia~~~~~R--------t~~qcr~Rw~~ 46 (131)
T 3zqc_A 18 KENGPQNWPRITSFLPNR--------SPKQCRERWFN 46 (131)
T ss_dssp HHHCSCCGGGGTTSCTTS--------CHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHCCC--------CHHHHHHHHhh
Confidence 368999999999888665 68999999964
No 64
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=84.25 E-value=0.31 Score=38.52 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=24.7
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||..+|..||..|-.| |+..|+.||...
T Consensus 20 ~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~~ 49 (105)
T 1gv2_A 20 QKYGPKRWSVIAKHLKGR--------IGKQCRERWHNH 49 (105)
T ss_dssp HHHCTTCHHHHHTTSTTC--------CHHHHHHHHHHT
T ss_pred HHhCCCcHHHHhhhhcCC--------CHHHHHHHHHhc
Confidence 368999999999887655 689999999763
No 65
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=83.95 E-value=0.59 Score=39.24 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=30.0
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (333)
.+||++.|..||...-. . ... .|+..|+.||+.|.+.-.-
T Consensus 47 ~k~G~g~W~~I~~~~~~--~-~~~-RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 47 EHLGTGRWRDVKFRAFE--N-VHH-RTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp HHHSSSCHHHHHHHHHS--S-SCC-CCHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCChHHHHHHhcc--c-cCC-CCHHHHHHHHHHHHhhccC
Confidence 46999999999987531 1 112 3899999999999976543
No 66
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=83.42 E-value=0.29 Score=41.59 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=7.0
Q ss_pred CCCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 019936 2 GNVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (333)
Q Consensus 2 ~~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (333)
...||+.+|..||..|-.| |+..|+.||..
T Consensus 21 v~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~ 50 (159)
T 1h89_C 21 VEQNGTDDWKVIANYLPNR--------TDVQCQHRWQK 50 (159)
T ss_dssp ------------------------------CHHHHHHT
T ss_pred HHHhCCCCHHHHHHHcCCC--------CHHHHHHHHHH
Confidence 3579999999999998766 56889999975
No 67
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=83.06 E-value=0.27 Score=37.63 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 7 VGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 7 t~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
...|..||..|-.| |+..|+.||..|.+-++
T Consensus 41 ~~rW~~IA~~vpGR--------T~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 41 SDCWDKIARCVPSK--------SKEDCIARYKLLVSGPS 71 (73)
T ss_dssp HHHHHHHGGGCSSS--------CHHHHHHHHHHHHSSCC
T ss_pred CchHHHHHHHcCCC--------CHHHHHHHHHHHHHccc
Confidence 45799999888555 78999999999987665
No 68
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=81.94 E-value=0.56 Score=38.56 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=28.4
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (333)
.|| ..|..||..|..| |+..|+.||..|.+++.-.
T Consensus 79 ~~G-~~W~~Ia~~l~gR--------t~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 79 EYG-RQWAIIAKFFPGR--------TDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp HHC-SCHHHHHTTSTTC--------CHHHHHHHHHHHHHHTTC-
T ss_pred HHC-cCHHHHHHHcCCC--------CHHHHHHHHHHHHHhcCCC
Confidence 467 4799999877666 6899999999999998754
No 69
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=81.40 E-value=0.59 Score=38.42 Aligned_cols=29 Identities=7% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||+ +|..||..|-.| |+..|+.||...
T Consensus 27 ~~~G~-~W~~Ia~~~~~R--------t~~qcr~Rw~~~ 55 (126)
T 3osg_A 27 AQHGS-DWKMIAATFPNR--------NARQCRDRWKNY 55 (126)
T ss_dssp HHHTT-CHHHHHHTCTTC--------CHHHHHHHHHHH
T ss_pred HHhCC-CHHHHHHHcCCC--------CHHHHHHHHhhh
Confidence 36898 999999888666 679999999863
No 70
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=80.10 E-value=0.88 Score=37.25 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=24.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (333)
..||...|..||..|-.| |+..|+.||..
T Consensus 43 ~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~ 71 (128)
T 1h8a_C 43 QKYGPKRWSDIAKHLKGR--------IGKQCRERWHN 71 (128)
T ss_dssp HHTCSCCHHHHHHHSSSC--------CHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHhcCC--------cHHHHHHHHHH
Confidence 358999999999988655 67999999985
No 71
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=78.98 E-value=0.61 Score=36.79 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=24.4
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhh
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERR 43 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rR 43 (333)
.||. .|..||..|..| |+..|+.||+.|.+|
T Consensus 73 ~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 73 RLGN-RWAEIAKLLPGR--------TDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHSS-CHHHHHTTCTTC--------CHHHHHHHHHHHTC-
T ss_pred HhCC-CHHHHHHHcCCC--------CHHHHHHHHHHHHhc
Confidence 4674 799999776555 789999999998776
No 72
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=77.97 E-value=0.96 Score=37.87 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
.+||.+.|..||...-. . ... .|+..|+.||+-|.+.-.
T Consensus 33 ~k~G~G~W~~Ia~~~~~--~-f~~-RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 33 EHLGTGRWRDVKMRAFD--N-ADH-RTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp HHHGGGCHHHHHHHHCS--C-CSS-CCSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHhcc--c-cCC-CCHHHHHHHHHHHHhhhc
Confidence 46999999999988732 1 112 288999999999998644
No 73
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.58 E-value=1.7 Score=32.97 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhh
Q 019936 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRF 44 (333)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRf 44 (333)
..|..||.-| .| |+..|+.+|..|+.-+
T Consensus 32 ~RW~~IA~~l-gR--------t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 32 GRWEKIAHEL-GR--------SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp THHHHHHHHH-TS--------CHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHh-CC--------CHHHHHHHHHHHHHhc
Confidence 5699999998 44 7899999999999875
No 74
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=77.25 E-value=0.69 Score=37.80 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=29.9
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (333)
.+||.+.|..|+...- .. ... .|+..|+.||+-|.++-+-.
T Consensus 29 ~k~G~g~W~~I~~~~~--~~-f~~-RT~v~lKdrWrnllk~~~~~ 69 (105)
T 2aje_A 29 EKLGTGRWRDVKLCAF--ED-ADH-RTYVDLKDKWKTLVHTAKIS 69 (105)
T ss_dssp HHHCSSSHHHHHSSSS--SS-TTC-CCHHHHHHHHHHHHHTTTCC
T ss_pred HHhCCCChHHHHHHhc--cc-cCC-CCHHHHHHHHHHHHhhccCC
Confidence 4699999999996431 01 112 39999999999999876543
No 75
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=75.82 E-value=1.7 Score=34.58 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhh
Q 019936 7 VGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRF 44 (333)
Q Consensus 7 t~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRf 44 (333)
...|..||.-|-.| |+..|+.+|..|....
T Consensus 31 ~~rW~~IA~~vpGR--------T~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 31 PDRWANVARAVEGR--------TPEEVKKHYEILVEDI 60 (93)
T ss_dssp TTHHHHHHHHSTTC--------CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCC--------CHHHHHHHHHHHHHHH
Confidence 46799999999766 6899999999997664
No 76
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=67.23 E-value=2.1 Score=36.16 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=24.7
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 019936 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (333)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (333)
..||...|..||..|..| |+..|+.||..+
T Consensus 74 ~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~~ 103 (159)
T 1h89_C 74 QKYGPKRWSVIAKHLKGR--------IGKQCRERWHNH 103 (159)
T ss_dssp HHHCSCCHHHHHHTSTTC--------CHHHHHHHHHHT
T ss_pred HHhCcccHHHHHHHcCCC--------CHHHHHHHHHHH
Confidence 358888999999988655 689999999753
No 77
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=62.48 E-value=4.9 Score=28.68 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=26.7
Q ss_pred HhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHh
Q 019936 66 LRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEE 98 (333)
Q Consensus 66 LRklRVAELrRever~d~sI-gsLq~kvk~L~ee 98 (333)
+-++.|+|||.|+.+.-+++ |.=+-=|++|.+.
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 56899999999999999986 4445567888765
No 78
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.89 E-value=5.2 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.1
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHh
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLER 42 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~r 42 (333)
.|| ..|..||.-|.+| |+..|...|-.-++
T Consensus 29 ~~g-k~w~~Ia~~l~~r--------t~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 29 QHP-KNFGLIASYLERK--------SVPDCVLYYYLTKK 58 (61)
T ss_dssp HST-TCHHHHHHHCTTS--------CHHHHHHHHHHHTC
T ss_pred HhC-CCHHHHHHHcCCC--------CHHHHHHHHHHhcC
Confidence 377 5899999888776 56889998865543
No 79
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=59.21 E-value=4.8 Score=29.24 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=26.3
Q ss_pred HhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHh
Q 019936 66 LRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEE 98 (333)
Q Consensus 66 LRklRVAELrRever~d~sI-gsLq~kvk~L~ee 98 (333)
|-|+.|+|||.++.+..+++ |.=+-=|++|++-
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 67999999999999999986 4444466777764
No 80
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=56.19 E-value=6.2 Score=36.55 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
.|| .+|..||.-|.+| |...|+..|..-++||.
T Consensus 150 kYG-KDW~~IAk~VgTK--------T~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 150 KYG-RDFQAISDVIGNK--------SVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp HHS-SCHHHHHHHHSSC--------CHHHHHHHHHHTTTTTT
T ss_pred HHC-cCHHHHHHHcCCC--------CHHHHHHHHHHHHHHhh
Confidence 467 4799999999888 57899999999888885
No 81
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=55.38 E-value=4.2 Score=33.39 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH-HHhhhcCC
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD-LERRFNDD 47 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d-L~rRfs~~ 47 (333)
.|| ..|..||..|..| |+..|+.||+. |++++..+
T Consensus 71 ~~G-~~W~~Ia~~l~gR--------t~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 71 KLG-SKWSVIAKLIPGR--------TDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp HSC-SCHHHHTTTSTTC--------CHHHHHHHHHHTTGGGCCCC
T ss_pred HHC-cCHHHHHHHcCCC--------CHHHHHHHHHHHHHHHhhcC
Confidence 467 4699999877666 67999999976 55556543
No 82
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=48.92 E-value=13 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 019936 273 LETIQTRVERGSYSACILTFYRDLLLLFNNA 303 (333)
Q Consensus 273 L~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 303 (333)
..-|+..+.+|.|.|.+ |.+||.+.++..-
T Consensus 15 ~~~i~~~V~sG~Y~s~S-EviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSAS-EVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 34689999999999999 9999988887653
No 83
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=48.66 E-value=8.6 Score=29.73 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=28.7
Q ss_pred HHhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHhh
Q 019936 65 HLRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEER 99 (333)
Q Consensus 65 ELRklRVAELrRever~d~sI-gsLq~kvk~L~eer 99 (333)
.|-|+.|+|||.|+.+.-+++ |.=+-=|+||++.-
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~ 60 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQ 60 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 567999999999999999997 55555788888763
No 84
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=46.61 E-value=21 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=28.3
Q ss_pred HHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 019936 65 HLRKVRVDELKRELQRCDLSILSLQLQVKKLEE 97 (333)
Q Consensus 65 ELRklRVAELrRever~d~sIgsLq~kvk~L~e 97 (333)
..|..|+.||..+++..|.-|+.|+.++.++..
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999887653
No 85
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.45 E-value=41 Score=26.06 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 019936 72 DELKRELQRCDLSILSLQLQVKKLEEE 98 (333)
Q Consensus 72 AELrRever~d~sIgsLq~kvk~L~ee 98 (333)
.-||+.|.-+-+.-..||.||+.|.+|
T Consensus 52 ~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 52 QSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999997
No 86
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=41.71 E-value=17 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHh
Q 019936 65 HLRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEE 98 (333)
Q Consensus 65 ELRklRVAELrRever~d~sI-gsLq~kvk~L~ee 98 (333)
.|-++.|+|||.++.+.-+++ |.=+-=|+||.+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 366899999999999999986 4545567888765
No 87
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.65 E-value=61 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 019936 71 VDELKRELQRCDLSILSLQLQVKKLEEERE 100 (333)
Q Consensus 71 VAELrRever~d~sIgsLq~kvk~L~eere 100 (333)
+.-||+.|...-+...-||.+|+.|++|=.
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999843
No 88
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.27 E-value=25 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHhhhhhhhHHHHHHHHHH
Q 019936 68 KVRVDELKRELQRCDLSILSLQLQVKKL 95 (333)
Q Consensus 68 klRVAELrRever~d~sIgsLq~kvk~L 95 (333)
+.++..+..+|+.+..+|..|+.+|+.+
T Consensus 32 k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467788889999999999999988765
No 89
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=36.37 E-value=22 Score=22.20 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.2
Q ss_pred chHHHHhHhhHHHHHHH
Q 019936 61 PWLEHLRKVRVDELKRE 77 (333)
Q Consensus 61 ~W~eELRklRVAELrRe 77 (333)
+=|+.||..|+++|...
T Consensus 5 ~ELeair~~rl~~lq~~ 21 (27)
T 1yyb_A 5 EELEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45899999999999764
No 90
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.11 E-value=53 Score=23.52 Aligned_cols=33 Identities=30% Similarity=0.263 Sum_probs=24.8
Q ss_pred hHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 019936 67 RKVRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (333)
Q Consensus 67 RklRVAELrRever~d~sIgsLq~kvk~L~eer 99 (333)
+|.++.+|-.+|+....-...|+.+|..|.+|-
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777778888888887763
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.43 E-value=62 Score=24.76 Aligned_cols=34 Identities=38% Similarity=0.477 Sum_probs=25.8
Q ss_pred HHHHhH--hhHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 019936 63 LEHLRK--VRVDELKRELQRCDLSILSLQLQVKKLE 96 (333)
Q Consensus 63 ~eELRk--lRVAELrRever~d~sIgsLq~kvk~L~ 96 (333)
.+|||. .|+++|-.++...|.-|-.||+++-+++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344543 4888888889889999999988886653
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.10 E-value=71 Score=22.92 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.9
Q ss_pred hHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 019936 67 RKVRVDELKRELQRCDLSILSLQLQVKKLEEERE 100 (333)
Q Consensus 67 RklRVAELrRever~d~sIgsLq~kvk~L~eere 100 (333)
++.++.+|-.+|+....-...|+..|..|.++-.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777788888888887643
No 93
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.41 E-value=37 Score=22.98 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHhhcC
Q 019936 82 DLSILSLQLQVKKLEEEREK 101 (333)
Q Consensus 82 d~sIgsLq~kvk~L~eere~ 101 (333)
-.-|..|+.|+..|++|++.
T Consensus 14 keQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999874
No 94
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.90 E-value=97 Score=24.34 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=25.4
Q ss_pred HHHhHhh------HHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 019936 64 EHLRKVR------VDELKRELQRCDLSILSLQLQVKKLEEE 98 (333)
Q Consensus 64 eELRklR------VAELrRever~d~sIgsLq~kvk~L~ee 98 (333)
|.|.+|| +..-+.++++-.--|-.++.+|+.|+..
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5566666 5666677777778888888888888764
No 95
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=24.46 E-value=30 Score=35.04 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 019936 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (333)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (333)
.||. +|..||.=|.+| |+.-|+.-|..-++||.
T Consensus 397 ~yGk-dw~~IA~~VgTK--------T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 397 KYGR-DFQAISDVIGNK--------SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp HHTT-CHHHHHHHHSSC--------CHHHHHHHHHHTTTTTT
T ss_pred HHCc-CHHHHHHHhCCC--------CHHHHHHHHHHHHHHhC
Confidence 5786 899999999888 56899999988788885
No 96
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.14 E-value=1.2e+02 Score=21.00 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 019936 71 VDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (333)
Q Consensus 71 VAELrRever~d~sIgsLq~kvk~L~eere~ 101 (333)
++-.=||..+-.--|-.||.|++.|++.-.+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~a~k 41 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEEAAK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555689999999999999999999987443
No 97
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=23.01 E-value=27 Score=29.35 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=13.2
Q ss_pred chHHHHhHhhHHHHH
Q 019936 61 PWLEHLRKVRVDELK 75 (333)
Q Consensus 61 ~W~eELRklRVAELr 75 (333)
+=||+||+.|+|||.
T Consensus 3 ~ELeaIR~~Rl~ELq 17 (127)
T 2jxn_A 3 PELQCIRECRLAQLK 17 (127)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHH
Confidence 458999999999986
No 98
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.97 E-value=1.9e+02 Score=23.45 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=40.0
Q ss_pred ChHhHHHhHHHHHhhhcCCCCCCCCCCCCCccchHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 019936 29 TPQCCKQKYRDLERRFNDDPQPHNNNNHNVHVPWLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEERE 100 (333)
Q Consensus 29 Tp~~Cr~Ky~dL~rRfs~~~~~~~~~~~~~~~~W~eELRklRVAELrRever~d~sIgsLq~kvk~L~eere 100 (333)
|-+.-.+.|-+|-+|++. .-+|=++||.. -..++..|-.|+.+|++|..|-.
T Consensus 31 SKqELIqEYl~LE~~~s~---------------le~e~~rlr~~-----~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSR---------------MEDENNRLRLE-----SKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp CHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-----hccchhhHHHHHHHHHHHHHHHH
Confidence 567777899999999973 34566666655 45568999999999999998854
No 99
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.43 E-value=1.1e+02 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=25.8
Q ss_pred hHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 019936 62 WLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (333)
Q Consensus 62 W~eELRklRVAELrRever~d~sIgsLq~kvk~L~eer 99 (333)
.+-+=+|.+..+|-.+|+.-..-...|..+|..|+.|-
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777776666777777777777763
No 100
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=20.83 E-value=66 Score=26.57 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=26.1
Q ss_pred hHHHHhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHH
Q 019936 62 WLEHLRKVRVDELKRELQRCDLSI-LSLQLQVKKLE 96 (333)
Q Consensus 62 W~eELRklRVAELrRever~d~sI-gsLq~kvk~L~ 96 (333)
-+..|.|+.||||+..+....+++ |.=+.=+++++
T Consensus 33 ~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~ 68 (114)
T 2rnn_A 33 TITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIR 68 (114)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHH
Confidence 456699999999999999999997 43333344444
No 101
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=20.61 E-value=17 Score=30.22 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.3
Q ss_pred chHHHHhHhhHHHHHHH
Q 019936 61 PWLEHLRKVRVDELKRE 77 (333)
Q Consensus 61 ~W~eELRklRVAELrRe 77 (333)
+=||+||+.|++||.+.
T Consensus 3 ~ELe~IR~~rl~eLq~q 19 (116)
T 2hvu_A 3 PELQCIRECRLAQLKNN 19 (116)
T ss_dssp SHHHHHHHHHHHTCSCT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45899999999999754
Done!