BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019937
         (333 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K07|A Chain A, Crystal Structure Of Cusa
 pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter Cusa
 pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter Cusa
 pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
          Length = 1055

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 232  GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
            G GAG ++ S + + M G MI  PLLS+
Sbjct: 1009 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1036


>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
            From Escherichia Coli, R Mutant
          Length = 1054

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 232  GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
            G GAG ++ S + + M G MI  PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035


>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
            From Escherichia Coli, Mutant
          Length = 1054

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 232  GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
            G GAG ++ S + + M G MI  PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035


>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
            From Escherichia Coli, E716f Mutant
          Length = 1054

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 232  GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
            G GAG ++ S + + M G MI  PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035


>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion States
            Of The Cusba Adaptor-Transporter Complex
 pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
            Adaptor- Transporter Complex
 pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
            Adaptor- Transporter Complex
          Length = 1054

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 232  GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
            G GAG ++ S + + M G MI  PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035


>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
            From Escherichia Coli
          Length = 1054

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 232  GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
            G GAG ++ S + + M G MI  PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,007,766
Number of Sequences: 62578
Number of extensions: 355992
Number of successful extensions: 695
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 7
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)