BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019937
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86K80|U420_DICDI UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3
SV=1
Length = 527
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 130/247 (52%), Gaps = 7/247 (2%)
Query: 70 FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
F P+GYP SV Y Y + ++Q S L+T+++L G+ + A + W+
Sbjct: 63 FLPNGYPDSVTTDYFGYQFWDSIQALCSTITGTLATRAILKGYGVGDSSATVASATTQWL 122
Query: 128 LKDGMQHVGKLICS-NLGARMDSEPKRWRILADALYDLGTGLEVLSPL-CPQLFLEMAGL 185
++DGM +G+++ + G +D K+WR AD L ++G E++SPL QLFL ++ +
Sbjct: 123 IRDGMGMIGRIVFAWRKGTDLDCNSKKWRYTADILNNIGMAFEMISPLFSSQLFLPLSCI 182
Query: 186 GNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTV-- 243
G AK I VA T+ + FAK NL+D+ AK + T N+VG+ + ++S +
Sbjct: 183 GLIAKSICGVAGGCTKASLTQHFAKRDNLADVSAKDGSQETAVNLVGMLLSVIVSSFIND 242
Query: 244 CSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKT-GRISSPADLR 302
+S+ +V + +H++ + A + ++N R +I F+ G I SP+++
Sbjct: 243 NTSLIVTWLVFLFFTSLHLFCNYRAVSAVQLKSINRYRAYLIYDYFIHNQGSIPSPSEIS 302
Query: 303 YREDLLF 309
E++LF
Sbjct: 303 KLENILF 309
>sp|Q499P8|CP058_RAT UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 466
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 3/241 (1%)
Query: 70 FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
P G+P SV+ YL+Y + ++Q F S+ L+TQ++L G+ A A +W+
Sbjct: 75 LLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWL 134
Query: 128 LKDGMQHVGKLICSNL-GARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLG 186
+KD +G++I + G+++D K+WR+ AD L D LE+++P+ P F
Sbjct: 135 VKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTS 194
Query: 187 NFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSS 246
N AK I VA ATR + A+ N++D+ AK + T+ N+ GL + + V
Sbjct: 195 NLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDC 254
Query: 247 MQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYRED 306
+ + LL+ +H+Y+ +RA + TLN R +++ F++ G + PA E
Sbjct: 255 LSLSLGCFILLTALHIYANYRAVRALVLETLNESRLQLVLKHFLQRGEVLEPASANQMEP 314
Query: 307 L 307
L
Sbjct: 315 L 315
>sp|Q91W34|CP058_MOUSE UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1
Length = 466
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 7/243 (2%)
Query: 70 FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
P G+P SV+ YL Y + ++Q F S+ L+TQ++L G+ A A +W+
Sbjct: 75 LLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWL 134
Query: 128 LKDGMQHVGKLICSNL-GARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLG 186
+KD +G++I + G+++D K+WR+ AD L D+ LE+++P+ P F
Sbjct: 135 VKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTS 194
Query: 187 NFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTV--C 244
N AK I VA ATR + A+ N++D+ AK + T+ N+ GL + + V C
Sbjct: 195 NLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDC 254
Query: 245 SSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYR 304
S+ V LL+ +H+Y+ +RA + TLN R +++ F++ G + PA
Sbjct: 255 PSLSLGCFV--LLTALHIYANYRAVRALVLETLNESRLQLVLEHFLQRGEVLEPASANQM 312
Query: 305 EDL 307
E L
Sbjct: 313 EPL 315
>sp|Q5R8F6|CP058_PONAB UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1
Length = 468
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 5/276 (1%)
Query: 35 VTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQH 94
++R + +P+G S +V P + F P G+P SV+ YL Y + ++Q
Sbjct: 44 LSRAFTVKPEGRDSGEVGAPGAP--SPPLSGLQAVFLPQGFPDSVSPDYLPYQLWDSVQA 101
Query: 95 FTSAALSVLSTQSLLFAAGLRPTPA--QATVVSWILKDGMQHVGKLICSNL-GARMDSEP 151
F S L+TQ++L G+ A A +W++KD +G+++ + G+++D
Sbjct: 102 FASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNA 161
Query: 152 KRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKE 211
K+WR+ AD L D+ LE+++P+ P F N AK I VA ATR + A+
Sbjct: 162 KQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARR 221
Query: 212 GNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRA 271
N++D+ AK + TL N+VGL + + V + L+ +H+Y+ +RA
Sbjct: 222 NNMADVSAKDSSQETLVNLVGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRA 281
Query: 272 APVNTLNPQRTAMIVADFVKTGRISSPADLRYREDL 307
+ TLN R +++ +++ G + +P E L
Sbjct: 282 LVMETLNEGRLRLVLKHYLQRGEVLNPTAANRMEPL 317
>sp|Q96GQ5|CP058_HUMAN UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2
Length = 468
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 134/276 (48%), Gaps = 5/276 (1%)
Query: 35 VTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQH 94
++R + +P+G + +V P + F P G+P SV+ YL Y + ++Q
Sbjct: 44 LSRAFTVKPEGRDAGEVGASGAP--SPPLSGLQAVFLPQGFPDSVSPDYLPYQLWDSVQA 101
Query: 95 FTSAALSVLSTQSLLFAAGLRPTPA--QATVVSWILKDGMQHVGKLICSNL-GARMDSEP 151
F S+ L+TQ++L G+ A A +W++KD +G+++ + G+++D
Sbjct: 102 FASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNA 161
Query: 152 KRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKE 211
K+WR+ AD L D+ LE+++P+ P F N AK I VA ATR + A+
Sbjct: 162 KQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARR 221
Query: 212 GNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRA 271
N++D+ AK + TL N+ GL + + V + L+ +H+Y+ +RA
Sbjct: 222 NNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRA 281
Query: 272 APVNTLNPQRTAMIVADFVKTGRISSPADLRYREDL 307
+ TLN R +++ +++ G + P E L
Sbjct: 282 LVMETLNEGRLRLVLKHYLQRGEVLDPTAANRMEPL 317
>sp|Q5SM03|MURA_THET8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=murA
PE=3 SV=1
Length = 425
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 63 VDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRP------ 116
+D+ L+K + SG+ V E ++R FRA A V + + F L+P
Sbjct: 261 LDALLDKLWRSGHRLEVGEDWIR---FRATP--DPAPFHVEAREYPGFPTDLQPIATAYL 315
Query: 117 --TPAQATVVSWILKDGMQHVGKLICSNLGARMDSE 150
P Q+TVV I D HVG+L ARM +E
Sbjct: 316 ATVPGQSTVVDRIYPDRFTHVGEL------ARMGAE 345
>sp|Q72GJ4|MURA_THET2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=murA PE=3 SV=2
Length = 425
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 63 VDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRP------ 116
+D+ L+K + SG+ V E ++R FRA A V + + F L+P
Sbjct: 261 LDALLDKLWRSGHRLEVGEDWIR---FRATP--DPAPFHVEAREYPGFPTDLQPIATAYL 315
Query: 117 --TPAQATVVSWILKDGMQHVGKLICSNLGARMDSE 150
P Q+TVV I D HVG+L ARM +E
Sbjct: 316 ATVPGQSTVVDRIYPDRFTHVGEL------ARMGAE 345
>sp|Q86XI2|CNDG2_HUMAN Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1
Length = 1143
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 37 RHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSV 79
+ ++ P H+ V++ DSRPV R+V N F P P V
Sbjct: 493 KFWKICPMEHILVRLETDSRPVSRRLVSLIFNSFLPVNQPEEV 535
>sp|P42112|YXAM_BACSU Uncharacterized MFS-type transporter YxaM OS=Bacillus subtilis
(strain 168) GN=yxaM PE=3 SV=3
Length = 399
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 41 FQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYP---FSVNEG 82
F+P G + ++H +V S+LNKFFP Y FS+N G
Sbjct: 294 FRPLGIPCTAFLLAIEDIHHPIVTSYLNKFFPDSYKNTLFSLNSG 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,384,639
Number of Sequences: 539616
Number of extensions: 4911917
Number of successful extensions: 11547
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11531
Number of HSP's gapped (non-prelim): 11
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)