Query 019937
Match_columns 333
No_of_seqs 167 out of 256
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_A Kinetochore protein HEC 16.2 1.5E+02 0.0053 27.7 4.9 28 58-85 13-40 (315)
2 2w2s_A Matrix protein; viral a 11.8 1.3E+02 0.0044 26.3 2.7 19 1-19 1-19 (202)
3 2dg7_A Putative transcriptiona 10.6 79 0.0027 25.3 0.9 21 196-216 36-56 (195)
4 2rae_A Transcriptional regulat 9.7 95 0.0032 24.9 1.1 21 196-216 46-66 (207)
5 2ebm_A RWD domain-containing p 9.2 82 0.0028 24.9 0.5 15 68-83 60-74 (128)
6 2f07_A YVDT; helix-turn-helix, 8.2 1.1E+02 0.0038 24.8 0.9 21 196-216 39-59 (197)
7 1ujr_A Hypothetical protein AK 8.1 1.2E+02 0.004 24.6 1.0 11 76-86 1-11 (110)
8 2ebk_A RWD domain-containing p 7.8 1.2E+02 0.0041 24.0 0.9 15 68-83 61-75 (128)
9 3cjd_A Transcriptional regulat 7.8 74 0.0025 26.0 -0.4 20 196-215 41-60 (198)
10 2v57_A TETR family transcripti 7.7 74 0.0025 25.2 -0.4 28 184-216 34-61 (190)
No 1
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=16.17 E-value=1.5e+02 Score=27.73 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHhhcCCCCCCccccCccc
Q 019937 58 VYHRVVDSFLNKFFPSGYPFSVNEGYLR 85 (333)
Q Consensus 58 ~~~~~~~~l~~~FLP~GYP~SVs~dYl~ 85 (333)
..+.+.+.+.+++-..|||+++|+.=++
T Consensus 13 ~q~~~~~~i~~fL~~~~~~~~is~k~L~ 40 (315)
T 2ve7_A 13 FIQQCIRQLCEFLTENGYAHNVSMKSLQ 40 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCCTGGGS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccCC
Confidence 3456777888888899999988877664
No 2
>2w2s_A Matrix protein; viral assembly, viral morphogenesis, polymer, viral protein, VSV; 2.75A {Lagos bat virus}
Probab=11.81 E-value=1.3e+02 Score=26.30 Aligned_cols=19 Identities=42% Similarity=0.373 Sum_probs=0.0
Q ss_pred CchHHHHHhhcccCCCCCC
Q 019937 1 MNLLEKIKKQKKKEPDKSM 19 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (333)
||||.||-+.-|+|.++++
T Consensus 1 mnflrkivk~ckde~~~k~ 19 (202)
T 2w2s_A 1 MNFLRKIVKNCKDEEIPKP 19 (202)
T ss_dssp -------------------
T ss_pred CcHHHHHHhhcccccccCC
Confidence 8999988777555544443
No 3
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=10.56 E-value=79 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=17.1
Q ss_pred hhhcchhhhhhhhhhcCCcch
Q 019937 196 AARATRLPIYSSFAKEGNLSD 216 (333)
Q Consensus 196 a~~aTraai~~hFA~~~NlgD 216 (333)
.+|.+|++|+.||.-++.|-.
T Consensus 36 ~agvs~~t~Y~~F~sK~~Ll~ 56 (195)
T 2dg7_A 36 RAGLTRRSYFRYFPDKREVLF 56 (195)
T ss_dssp HTTCCHHHHHHHCSSTTGGGT
T ss_pred HhCCCHHHHHHHcCCHHHHHH
Confidence 468899999999988776653
No 4
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=9.67 E-value=95 Score=24.95 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.0
Q ss_pred hhhcchhhhhhhhhhcCCcch
Q 019937 196 AARATRLPIYSSFAKEGNLSD 216 (333)
Q Consensus 196 a~~aTraai~~hFA~~~NlgD 216 (333)
.+|.+|++|++||.-++.|-.
T Consensus 46 ~agvs~~t~Y~~F~sK~~Ll~ 66 (207)
T 2rae_A 46 ASGIARRTLFRYFPSKNAIPW 66 (207)
T ss_dssp HTTSCHHHHHHHCSSTTTGGG
T ss_pred HhCCCcchHhhhCCCHHHHHH
Confidence 367899999999988776643
No 5
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=9.24 E-value=82 Score=24.91 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=11.2
Q ss_pred HhhcCCCCCCccccCc
Q 019937 68 NKFFPSGYPFSVNEGY 83 (333)
Q Consensus 68 ~~FLP~GYP~SVs~dY 83 (333)
.+-+|.+||++ .|.+
T Consensus 60 ~v~~p~~YP~~-~P~i 74 (128)
T 2ebm_A 60 KFTYSEKYPDE-APLY 74 (128)
T ss_dssp EEECCSSTTTS-CCEE
T ss_pred EEEeCCCCCCC-CceE
Confidence 46789999994 5653
No 6
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=8.24 E-value=1.1e+02 Score=24.75 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.9
Q ss_pred hhhcchhhhhhhhhhcCCcch
Q 019937 196 AARATRLPIYSSFAKEGNLSD 216 (333)
Q Consensus 196 a~~aTraai~~hFA~~~NlgD 216 (333)
.+|.+|++|+.||.-++.|-.
T Consensus 39 ~Agvskgt~Y~yF~sKe~L~~ 59 (197)
T 2f07_A 39 KAGTAQGTFYLYFSSKNALIP 59 (197)
T ss_dssp HHTSCHHHHHHHCSSSTTHHH
T ss_pred HhCCCchHHHHhCCCHHHHHH
Confidence 357899999999988776654
No 7
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=8.14 E-value=1.2e+02 Score=24.59 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=9.0
Q ss_pred CCccccCccch
Q 019937 76 PFSVNEGYLRY 86 (333)
Q Consensus 76 P~SVs~dYl~Y 86 (333)
|.||++|||+-
T Consensus 1 ~~~~~~~~~~~ 11 (110)
T 1ujr_A 1 PSSGSSGFLDK 11 (110)
T ss_dssp CCCCCCCCCCC
T ss_pred CCcCChhhhhC
Confidence 78888888875
No 8
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.78 E-value=1.2e+02 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=11.7
Q ss_pred HhhcCCCCCCccccCc
Q 019937 68 NKFFPSGYPFSVNEGY 83 (333)
Q Consensus 68 ~~FLP~GYP~SVs~dY 83 (333)
.+-+|.+||+. .|.+
T Consensus 61 ~~~~p~~YP~~-~P~i 75 (128)
T 2ebk_A 61 VFHLPVNYPSC-LPGI 75 (128)
T ss_dssp EEEECSSTTSS-CCCC
T ss_pred EEECCCCCCCC-CCeE
Confidence 46789999998 5654
No 9
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=7.77 E-value=74 Score=26.03 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.6
Q ss_pred hhhcchhhhhhhhhhcCCcc
Q 019937 196 AARATRLPIYSSFAKEGNLS 215 (333)
Q Consensus 196 a~~aTraai~~hFA~~~Nlg 215 (333)
.+|.+|++||.||.-++.|-
T Consensus 41 ~agvs~~t~Y~hF~~Ke~Ll 60 (198)
T 3cjd_A 41 QADCAVGAIYTHFQDLNALT 60 (198)
T ss_dssp HHTSCHHHHHHHCSSHHHHH
T ss_pred HhCCCccHHHHHhCCHHHHH
Confidence 46889999999998655443
No 10
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=7.72 E-value=74 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhhhhcCCcch
Q 019937 184 GLGNFAKGIAVVAARATRLPIYSSFAKEGNLSD 216 (333)
Q Consensus 184 ~lan~~Kai~gva~~aTraai~~hFA~~~NlgD 216 (333)
++..+++. +|.+|++||.||.-++.|-+
T Consensus 34 t~~~Ia~~-----agvs~~t~Y~~F~sK~~L~~ 61 (190)
T 2v57_A 34 ALGDIAAA-----AGVGRSTVHRYYPERTDLLR 61 (190)
T ss_dssp CHHHHHHH-----HTCCHHHHHHHCSSHHHHHH
T ss_pred CHHHHHHH-----hCCCHHHHHHHcCCHHHHHH
Confidence 44444443 58899999999987665543
Done!