Query 019937
Match_columns 333
No_of_seqs 167 out of 256
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 09:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d7ya3 d.87.1.1 (A:309-405) N 32.5 10 0.00073 27.7 2.1 36 270-305 53-88 (97)
2 d1ni5a4 d.229.1.1 (A:227-314) 30.4 28 0.002 24.6 4.3 59 269-328 15-75 (88)
3 d1q1ra3 d.87.1.1 (A:320-422) P 23.2 17 0.0013 26.7 2.0 36 270-305 51-86 (103)
4 d1vi0a1 a.4.1.9 (A:6-77) Hypot 14.9 14 0.001 24.8 -0.4 19 196-214 30-48 (72)
5 d3etja2 c.30.1.1 (A:1-78) N5-c 13.3 32 0.0023 24.4 1.3 22 131-152 8-35 (78)
6 d2fbqa1 a.4.1.9 (A:2-80) Trans 12.9 18 0.0013 24.7 -0.3 18 197-214 34-51 (79)
7 d1rp3a1 a.4.13.1 (A:87-163) Si 11.6 77 0.0056 21.4 2.9 28 279-306 9-37 (77)
8 d2daxa1 d.20.1.3 (A:8-147) Unc 11.1 80 0.0058 23.0 3.1 15 68-83 71-85 (140)
9 d1ku2a1 a.4.13.1 (A:273-332) S 10.7 94 0.0068 20.5 3.0 25 281-305 13-38 (60)
10 d1f5na1 a.114.1.1 (A:284-583) 10.2 74 0.0054 25.7 2.9 24 276-299 4-30 (300)
No 1
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=32.52 E-value=10 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=30.9
Q ss_pred hcccCCCccHHHHHHHHHHHHhcCCCCCHHHHhhcc
Q 019937 270 RAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYRE 305 (333)
Q Consensus 270 r~v~l~TLN~~R~~iv~~~~l~~g~V~sp~evn~~E 305 (333)
|.+-.-++|+.|-....+..++.|..|+|+++...+
T Consensus 53 ~lvgv~~vn~~~~~~~~rrli~~~~~~~~~~LaD~~ 88 (97)
T d1d7ya3 53 RIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPA 88 (97)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHHSSC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHCCCCCCHHHhcCCC
Confidence 555667899999999999999999999999988643
No 2
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain {Escherichia coli [TaxId: 562]}
Probab=30.38 E-value=28 Score=24.60 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=40.0
Q ss_pred hhcccCCCccHHHHHHHHHHHHhcC--CCCCHHHHhhccCcccCCCcccCCCceeeeccccc
Q 019937 269 MRAAPVNTLNPQRTAMIVADFVKTG--RISSPADLRYREDLLFPGRLIEDAGNVKMDRHGIR 328 (333)
Q Consensus 269 vr~v~l~TLN~~R~~iv~~~~l~~g--~V~sp~evn~~E~i~~~~~~~~~~~~v~lG~s~~~ 328 (333)
+..-.+..|...|..-+++.|++.. ..||.+++.+.-.-+...+.. ....|++|--.+|
T Consensus 15 L~i~~l~~Ls~~R~~nlLR~WL~~~~~~~Ps~~~L~ei~~ql~~a~~D-a~p~i~~~~~~ir 75 (88)
T d1ni5a4 15 LQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALARED-ASPCLRLGAFEIR 75 (88)
T ss_dssp EESGGGTTSCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTSCGG-GCCEEEETTEEEE
T ss_pred cCHHHHHhCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCC-CCcEEEECCEEEE
Confidence 4455688999999999999999953 567888888765544444322 2445666654443
No 3
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=23.17 E-value=17 Score=26.68 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=30.9
Q ss_pred hcccCCCccHHHHHHHHHHHHhcCCCCCHHHHhhcc
Q 019937 270 RAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYRE 305 (333)
Q Consensus 270 r~v~l~TLN~~R~~iv~~~~l~~g~V~sp~evn~~E 305 (333)
+.+-..++|+.|-....+..++.+..|+|+++...+
T Consensus 51 ~lvav~~vn~~~~~~~~r~li~~~~~~~~~~L~D~~ 86 (103)
T d1q1ra3 51 RVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDES 86 (103)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCTT
T ss_pred eEEEEEEeCCHHHHHHHHHHHHCCCCcCHHHhcCCC
Confidence 556667999999999999999999999999887644
No 4
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=14.89 E-value=14 Score=24.84 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.4
Q ss_pred hhhcchhhhhhhhhhcCCc
Q 019937 196 AARATRLPIYSSFAKEGNL 214 (333)
Q Consensus 196 a~~aTraai~~hFA~~~Nl 214 (333)
.+|.+|++++.||.-+++|
T Consensus 30 ~agvs~~~~y~~F~~K~~L 48 (72)
T d1vi0a1 30 QAGVADGTIYLYFKNKEDI 48 (72)
T ss_dssp HHTSCHHHHHHHCSSHHHH
T ss_pred HHCcCHHHHHHHCcCHHHH
Confidence 3579999999999876554
No 5
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}
Probab=13.25 E-value=32 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=15.6
Q ss_pred hhhHHHHHHH--h-hccC---ccCCCCc
Q 019937 131 GMQHVGKLIC--S-NLGA---RMDSEPK 152 (333)
Q Consensus 131 g~G~lg~ilf--a-~~G~---~~D~d~K 152 (333)
|-|+||+++. | ++|- -+|+++.
T Consensus 8 G~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 8 GNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp BCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6799999974 4 5884 3666544
No 6
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.86 E-value=18 Score=24.68 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.8
Q ss_pred hhcchhhhhhhhhhcCCc
Q 019937 197 ARATRLPIYSSFAKEGNL 214 (333)
Q Consensus 197 ~~aTraai~~hFA~~~Nl 214 (333)
+|.||++|+.||.-+++|
T Consensus 34 agvs~~s~y~~F~~K~~l 51 (79)
T d2fbqa1 34 AGVNLAAVNYHFGSKKAL 51 (79)
T ss_dssp HTSCHHHHHHHTCSHHHH
T ss_pred HCcChhHHHHHCcCHHHH
Confidence 579999999999866544
No 7
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=11.64 E-value=77 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHhhccC
Q 019937 279 PQRTAMIVADFVK-TGRISSPADLRYRED 306 (333)
Q Consensus 279 ~~R~~iv~~~~l~-~g~V~sp~evn~~E~ 306 (333)
.+++.-+.+.+.+ .|+-||++||++.=+
T Consensus 9 ~~ki~~a~~~L~~~lGR~Pt~~EiA~~lg 37 (77)
T d1rp3a1 9 ERRIKEVVEKLKEKLGREPTDEEVAKELG 37 (77)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHHHHC
Confidence 3456666677766 499999999987533
No 8
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.07 E-value=80 Score=23.00 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=11.0
Q ss_pred HhhcCCCCCCccccCc
Q 019937 68 NKFFPSGYPFSVNEGY 83 (333)
Q Consensus 68 ~~FLP~GYP~SVs~dY 83 (333)
.+-||..||++ .|..
T Consensus 71 ~~~lP~~YP~~-~P~i 85 (140)
T d2daxa1 71 ACILPFKYPAV-LPEI 85 (140)
T ss_dssp EEEECSSTTSS-CCCC
T ss_pred EEEecCcCCCc-CCce
Confidence 46799999975 4543
No 9
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=10.75 E-value=94 Score=20.52 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=18.6
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHhhcc
Q 019937 281 RTAMIVADFVK-TGRISSPADLRYRE 305 (333)
Q Consensus 281 R~~iv~~~~l~-~g~V~sp~evn~~E 305 (333)
|..-+-+++.+ .|+-||++|+++.=
T Consensus 13 rv~r~~~~l~qe~gRePt~eEiA~~l 38 (60)
T d1ku2a1 13 KLSRTARQLQQELGREPSYEEIAEAM 38 (60)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44555666666 59999999999763
No 10
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.21 E-value=74 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.9
Q ss_pred CccHHHHHHHHHHHHh---cCCCCCHH
Q 019937 276 TLNPQRTAMIVADFVK---TGRISSPA 299 (333)
Q Consensus 276 TLN~~R~~iv~~~~l~---~g~V~sp~ 299 (333)
|||...+..++..|++ +|.||++.
T Consensus 4 ~~~g~~l~~l~~~yv~ain~g~~P~i~ 30 (300)
T d1f5na1 4 QVNGPRLESLVLTYVNAISSGDLPCME 30 (300)
T ss_dssp ECBHHHHHHHHHHHHHHHHHTSCCBHH
T ss_pred eeeHHHHHHHHHHHHHHHcCCCCCChh
Confidence 7899999999999997 68999854
Done!