BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019938
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28955|NTAN1_PIG Protein N-terminal asparagine amidohydrolase OS=Sus scrofa GN=NTAN1
PE=1 SV=3
Length = 310
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 23/279 (8%)
Query: 59 SPSKYVYVFQREYATVDP--ALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEI--- 113
P +YV QRE A P V +G+D+ATTC +V+R+ N T + H D +
Sbjct: 42 GPQGLLYVQQRELAVTSPKDGSVCILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAE 101
Query: 114 VDIGLCQMLSLVVDHDLDAELDHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHV 173
V + + + S DH L G + +SD S L +L+ R+++ H+
Sbjct: 102 VSLIMSSIKSF-SDHTQRGRL----GVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIHL 156
Query: 174 QTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYE 233
TL V N + +++ N +PI +G V T + ASF R P+E +R RV +
Sbjct: 157 VTLCVTELNDREENE-NHFPIIYGIAVNVKTAEIYRASF--PDRGPEEELRAARVLT--- 210
Query: 234 DTSWNGKLLETYDTQTDRFVIAPCRWTVRKLHIVMSLQQLSDEEILRRCSTSPSAEGPDF 293
G ++ YD +T++ I P W H+ LQQ D++IL STSP AE P F
Sbjct: 211 ----GGPMISIYDAKTEQLRIGPYSWMPFP-HVDFWLQQ-DDKQILENLSTSPLAEPPHF 264
Query: 294 VENLRRQWNYLIKRPDWRET-FPWKQPRVFQRAADGGWR 331
VE++R +L K P T FP + V+++ D W+
Sbjct: 265 VEHIRSTLMFLKKYPSPTNTLFPGNKALVYKKNEDALWK 303
>sp|Q64311|NTAN1_MOUSE Protein N-terminal asparagine amidohydrolase OS=Mus musculus
GN=Ntan1 PE=2 SV=3
Length = 310
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 19/278 (6%)
Query: 59 SPSKYVYVFQREYATVDP--ALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEI-VD 115
P +YV QRE A P + +G+D+ATTC +V+R+ N T + H D + +
Sbjct: 42 GPQGLLYVQQRELAVTSPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGSDTKAE 101
Query: 116 IGLCQMLSLVVDHDLDAELDHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQT 175
+ L ++S + AE + +SD S L +L+ ++ + H+ T
Sbjct: 102 VPL--IMSSIKSFSEHAECGRLEVHLVG-GFSDDRQLSQKLTHQLLSEFDKQDDDIHLVT 158
Query: 176 LHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDT 235
L V N + +++ N +PI +G V T + ASF R P+E +R R +
Sbjct: 159 LCVTELNDREENE-NHFPIIYGIAVNIKTAEIYRASFQ--DRGPEEQLRAARALA----- 210
Query: 236 SWNGKLLETYDTQTDRFVIAPCRWTVRKLHIVMSLQQLSDEEILRRCSTSPSAEGPDFVE 295
G ++ YD +T++ I PC WT + LQQ D++IL STSP AE P FVE
Sbjct: 211 --GGPMISIYDAKTEQLRIGPCSWTPFP-QVDFWLQQ-DDKQILESLSTSPLAEPPHFVE 266
Query: 296 NLRRQWNYLIKRPDWRET-FPWKQPRVFQRAADGGWRR 332
++R +L K P FP + ++++ DG W +
Sbjct: 267 HIRSTLMFLKKFPSPENILFPGNKALLYKKNKDGLWEK 304
>sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens
GN=NTAN1 PE=1 SV=3
Length = 310
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 25/281 (8%)
Query: 59 SPSKYVYVFQREYATVDP--ALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDI 116
P +YV QRE A P + +G+D+ATTC +V+R+ N T + H D +
Sbjct: 42 GPQGLLYVQQRELAVTSPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTD---- 97
Query: 117 GLCQMLSLVVDHDLDAELDHAN----GTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFH 172
+ ++ + + + DHA + +SD S L +L+ R+++ H
Sbjct: 98 --TKAEVPLIMNSIKSFSDHAQCGRLEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIH 155
Query: 173 VQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSY 232
+ TL V N + +++ N +P+ +G V T + ASF R P+E +R R
Sbjct: 156 LVTLCVTELNDREENE-NHFPVIYGIAVNIKTAEIYRASFQ--DRGPEEQLRAAR----- 207
Query: 233 EDTSWNGKLLETYDTQTDRFVIAPCRWTVRKLHIVMSLQQLSDEEILRRCSTSPSAEGPD 292
T G ++ YD +T++ I P WT H+ L Q D++IL STSP AE P
Sbjct: 208 --TLAGGPMISIYDAETEQLRIGPYSWTPFP-HVDFWLHQ-DDKQILENLSTSPLAEPPH 263
Query: 293 FVENLRRQWNYLIKRPDWRET-FPWKQPRVFQRAADGGWRR 332
FVE++R +L K P T F + ++++ DG W +
Sbjct: 264 FVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEK 304
>sp|Q5JSL3|DOC11_HUMAN Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1
SV=2
Length = 2073
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 36/152 (23%)
Query: 91 VGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDHAN-GTTISECYSDM 149
VGL++R TSIA DN EI + + +L++ H D H N I++ Y
Sbjct: 1116 VGLLLRE-----TSIALQDNYEIRYTAISVIKNLLIKHAFDTRYQHKNQQAKIAQLY--- 1167
Query: 150 DGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDS-----------------QGNAY 192
LP L++ +QR + + + + ++ RD + AY
Sbjct: 1168 ----LPFVGLLLENIQRLAGRDTLYSCAAMPNSASRDEFPCGFTSPANRGSLSTDKDTAY 1223
Query: 193 PIF---HGFLVETCTGSLSPASFDGTSRCPDE 221
F HG E GSL P +G + PD+
Sbjct: 1224 GSFQNGHGIKREDSRGSLIP---EGATGFPDQ 1252
>sp|A2AF47|DOC11_MOUSE Dedicator of cytokinesis protein 11 OS=Mus musculus GN=Dock11 PE=1
SV=1
Length = 2073
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 91 VGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDHAN-GTTISECYSDM 149
VGL++R TSIA DN EI + + +L++ H D H N I++ Y
Sbjct: 1116 VGLLLRE-----TSIALQDNYEIRYTAISVIKNLLIKHAFDTRYQHKNQQAKIAQLY--- 1167
Query: 150 DGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLS 208
LP L++ +QR + + + + + RD +P GF+ T GSL+
Sbjct: 1168 ----LPFVGLLLENIQRLAGRDTLYSCAAMPSSASRDE----FPC--GFVSPTNRGSLA 1216
>sp|P47599|ACKA_MYCGE Acetate kinase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=ackA PE=3 SV=1
Length = 393
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 74 VDPALVDYVGTDEATTCVGLVIR-NRRNRMTSIAH-------MDNPEIVDIGLCQMLSLV 125
+DPA+V Y+ + +C +V N+++ M +I D PEI DI + ++ V
Sbjct: 241 IDPAIVSYIAEQQKLSCNDVVNELNKKSGMFAITGSSDMRDIFDKPEINDIAIKMYVNRV 300
Query: 126 VDHDLDAELDHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKR 185
D+ + L+ +G S ++ G + C +L+ ++ + LG T
Sbjct: 301 ADY-IAKYLNQLSGEIDSLVFTGGVGENASYCVQLI-----------IEKVASLGFKTNS 348
Query: 186 DSQGN 190
+ GN
Sbjct: 349 NLFGN 353
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 148 DMDGYSLPLCRKL-VDTLQRRQEKFHVQTLHVLGHNTKRDSQGN---AYPIFHGFLVETC 203
D+D + P RK D+L+R ++ LH++ + DS G+ +P F +
Sbjct: 62 DLDKWCKPTSRKFQFDSLKR------LRALHLI----EEDSSGSHIRLHPTFRQNFRDCL 111
Query: 204 TGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKL 241
TGS + +F S PDE I+ S+ W L
Sbjct: 112 TGSQARNAFGNLSTTPDEQSVSIKFLDSFALQKWESIL 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,147,127
Number of Sequences: 539616
Number of extensions: 5204625
Number of successful extensions: 12568
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12555
Number of HSP's gapped (non-prelim): 14
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)