Query 019938
Match_columns 333
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14736 N_Asn_amidohyd: Prote 100.0 2E-111 5E-116 797.7 29.6 269 42-333 1-274 (274)
2 PRK13490 chemoreceptor glutami 95.6 0.38 8.2E-06 43.3 13.2 126 62-212 4-155 (162)
3 PRK13493 chemoreceptor glutami 95.4 0.36 7.7E-06 45.4 12.8 127 61-212 28-182 (213)
4 PRK13498 chemoreceptor glutami 95.4 0.53 1.2E-05 42.6 13.5 127 61-212 7-158 (167)
5 PRK13488 chemoreceptor glutami 95.2 0.62 1.4E-05 41.7 13.3 125 63-212 3-150 (157)
6 PRK13487 chemoreceptor glutami 95.0 0.68 1.5E-05 43.2 13.2 127 61-212 21-170 (201)
7 PRK13491 chemoreceptor glutami 94.4 0.47 1E-05 44.4 10.6 128 60-212 12-158 (199)
8 PRK13497 chemoreceptor glutami 94.4 0.48 1E-05 43.6 10.5 128 60-212 6-155 (184)
9 PRK13495 chemoreceptor glutami 94.1 0.63 1.4E-05 41.9 10.5 124 64-212 4-148 (159)
10 COG1871 CheD Chemotaxis protei 93.9 0.18 3.9E-06 45.8 6.7 97 60-167 6-126 (164)
11 PRK13494 chemoreceptor glutami 92.5 0.62 1.4E-05 42.2 7.9 124 61-209 11-154 (163)
12 PRK13489 chemoreceptor glutami 92.5 1.3 2.9E-05 42.3 10.4 128 61-213 18-169 (233)
13 PRK00766 hypothetical protein; 32.3 1.1E+02 0.0023 28.7 5.6 45 79-124 9-65 (194)
14 COG1628 Endonuclease V homolog 28.3 1.7E+02 0.0037 27.4 6.1 50 78-128 8-68 (185)
15 PF07369 DUF1488: Protein of u 22.6 64 0.0014 25.2 2.0 45 2-46 21-72 (83)
16 PF13950 Epimerase_Csub: UDP-g 22.5 1.1E+02 0.0024 23.2 3.2 33 274-309 28-60 (62)
17 cd03378 beta_CA_cladeC Carboni 21.2 34 0.00073 30.6 0.2 47 91-143 93-139 (154)
18 COG4848 Uncharacterized protei 20.4 61 0.0013 31.2 1.7 17 67-83 197-214 (265)
No 1
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=100.00 E-value=2.2e-111 Score=797.74 Aligned_cols=269 Identities=39% Similarity=0.630 Sum_probs=262.0
Q ss_pred hhccCcceEeecCCCCCCCCeEEEEecceeEeeCCC--ceeeeccCCCceeeEEEEEeCCCCceEEEeccCCcchhhhHH
Q 019938 42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC 119 (333)
Q Consensus 42 ~l~~~p~~~v~~~~~~~~~~~lLYV~QrE~A~~~P~--~v~~lGSDdATTChivVlR~~~sG~t~laH~Dgs~~v~~~v~ 119 (333)
+|+++|.+.++ |+|+|||+|||||||+|+ +|+|||||||||||||||||++|||||||||||+++ +++|+
T Consensus 1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~ 72 (274)
T PF14736_consen 1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA 72 (274)
T ss_pred CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence 58899999998 999999999999999999 699999999999999999999999999999999997 99999
Q ss_pred HHHHHhhcccccccccCCCccee---eccccCCCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEE
Q 019938 120 QMLSLVVDHDLDAELDHANGTTI---SECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFH 196 (333)
Q Consensus 120 ~ml~~i~~~s~~~~~~~~~grle---vGGf~D~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~ 196 (333)
+||+++++++.++ .+|+|| ||||.|++|||++|+.+||++||+++++|||+||||+++||+++ +|++|||||
T Consensus 73 ~ml~~v~~~~~~~----~~~~lelhLVGGF~D~~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt~~~-~g~~~Pii~ 147 (274)
T PF14736_consen 73 QMLSSVQSLSNGY----PEGRLELHLVGGFDDDRGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNTRVE-DGIHRPIIY 147 (274)
T ss_pred HHHHHHHhhccCC----CCCceEEEEEccccCcccchHHHHHHHHHHHHcCcceEEEEEEEEccCCCccC-CCccCcEEE
Confidence 9999999998877 899999 89999999999999999999999999999999999999999987 599999999
Q ss_pred EEEEEecCCeeecccCCCCCCCChHHHHHhhhhccccccCCCCeeeeeeeCCCCeEEeccccccccchhHHhhhccCCHH
Q 019938 197 GFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRWTVRKLHIVMSLQQLSDE 276 (333)
Q Consensus 197 Gi~VnvkTg~ifpAsF~~~~rGP~~~lR~aR~~~~~~~~~~gg~l~~iYD~~~~~l~I~Pf~~~p~~~~v~~~L~~~sD~ 276 (333)
||+||+|||+||||+| ++|||+|+||+||+++ ++++|+||||+++++|+|+||+|+|++ ++++|| +|||+
T Consensus 148 Gi~VnvkTG~IfpAsF--~~rGP~~~lR~aR~~~------~~~~l~~iYD~~~~~l~I~Pf~~~p~~-~~~~~l-~~~D~ 217 (274)
T PF14736_consen 148 GIAVNVKTGEIFPASF--PDRGPDEILRSARVFT------GGGRLLNIYDTETDQLRIGPFHWRPFP-HADFWL-SQSDS 217 (274)
T ss_pred EEEEEecCCeEecccC--cccCCcHHHHHHHHhc------CCCceEEEEECCCCeEEECCCcCCCcc-ChHHHh-hCCHH
Confidence 9999999999999999 9999999999999995 689999999999999999999999996 899999 89999
Q ss_pred HHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCCCcCCCCCCceEEeCCCCCeeeC
Q 019938 277 EILRRCSTSPSAEGPDFVENLRRQWNYLIKRPDWRETFPWKQPRVFQRAADGGWRRC 333 (333)
Q Consensus 277 ~iL~~lSTSP~aEpPhFv~~iR~tl~fl~~hP~~~~~Fp~~~P~~y~r~~~G~W~~~ 333 (333)
+|||+|||||+|||||||++||++|+||++||+|+++||+|||++|+|+++|+|++|
T Consensus 218 ~iL~~lSTSP~aEpp~Fv~~ir~~l~fl~~hP~p~~~Fp~~~p~~y~r~~~G~W~~~ 274 (274)
T PF14736_consen 218 EILQYLSTSPEAEPPHFVEHIRSTLRFLQEHPDPDTLFPDNQPRVYRRDEDGRWERV 274 (274)
T ss_pred HHHHhcCCCcCCCCchHHHHHHHHHHHHHHCCCHHHhCCCCCceEEEECCCCCEEeC
Confidence 999999999999999999999999999999999999999999999999999999996
No 2
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.60 E-value=0.38 Score=43.33 Aligned_cols=126 Identities=10% Similarity=0.188 Sum_probs=89.5
Q ss_pred eEEEEecceeEee-CCC-ceee-eccCCCceeeEEEEEeCCCCceEEEeccC------------CcchhhhHHHHHHHhh
Q 019938 62 KYVYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN------------PEIVDIGLCQMLSLVV 126 (333)
Q Consensus 62 ~lLYV~QrE~A~~-~P~-~v~~-lGSDdATTChivVlR~~~sG~t~laH~Dg------------s~~v~~~v~~ml~~i~ 126 (333)
..++|..+|++++ .|. -..+ ||| |+.|+|.++..+.-.|+|+== ....+.|+..|++.+.
T Consensus 4 ~~i~v~ige~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Li~~m~ 78 (162)
T PRK13490 4 KEIKVGIADLNVAKSPDKIITVGLGS-----CIGIALYDGIKCIGGLSHIMLPDSTQFSNVTNPMKFADLAIPILIEKME 78 (162)
T ss_pred cEEEEEeCCEEEECCCCEEEEEcCcc-----eEEEEEEcCCCCEEEEEEEECCCCccCCCCCCCccCHHHHHHHHHHHHH
Confidence 3678999999999 676 3555 786 999999999999999999721 2356789999999999
Q ss_pred cccccccccCCCccee---eccccC--------CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceE
Q 019938 127 DHDLDAELDHANGTTI---SECYSD--------MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIF 195 (333)
Q Consensus 127 ~~s~~~~~~~~~grle---vGGf~D--------~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii 195 (333)
.... ...+|+ .||-+= .....++......+.|.+.. |.|..-=+++.+.+
T Consensus 79 ~~Ga------~~~~l~aKifGGA~m~~~~~~~~~~~IG~rNv~~a~~~L~~~g--I~i~a~dvGG~~gR----------- 139 (162)
T PRK13490 79 KLGA------NKRNLKAKIAGGASMFNFSDKSMVMDIGNRNGKAVKKKLKELS--IPILAEDIGGNKGR----------- 139 (162)
T ss_pred HcCC------CHHHEEEEEEeCccccCCCCccccCChhHHHHHHHHHHHHHcC--CcEEEEECCCCCCc-----------
Confidence 8753 566777 455431 23566777777788887754 44444445554442
Q ss_pred EEEEEEecCCeeecccC
Q 019938 196 HGFLVETCTGSLSPASF 212 (333)
Q Consensus 196 ~Gi~VnvkTg~ifpAsF 212 (333)
=+-+++.||++.=-..
T Consensus 140 -~i~f~~~tG~v~vk~~ 155 (162)
T PRK13490 140 -TMIFDTSDGKVYIKTV 155 (162)
T ss_pred -EEEEECCCCEEEEEEc
Confidence 2568888998875443
No 3
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.40 E-value=0.36 Score=45.45 Aligned_cols=127 Identities=9% Similarity=0.100 Sum_probs=90.5
Q ss_pred CeEEEEecceeEeeC-CCce-eeeccCCCceeeEEEEEeCCCCceEEEecc--------------------CCcchhhhH
Q 019938 61 SKYVYVFQREYATVD-PALV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMD--------------------NPEIVDIGL 118 (333)
Q Consensus 61 ~~lLYV~QrE~A~~~-P~~v-~~lGSDdATTChivVlR~~~sG~t~laH~D--------------------gs~~v~~~v 118 (333)
...++|..+|++++. |..+ -+||| |+.|+|.++..+...|+|+= .....+.++
T Consensus 28 ~~~v~l~pGe~~v~~~~~~itT~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~~~~~~~~rY~d~Am 102 (213)
T PRK13493 28 RHWVKVMPGGVYATSDQEIIHTGLGS-----CVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALLSDSSRYGCYAM 102 (213)
T ss_pred ceEEEEecCeEEEECCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEEcCCCcccCccccccccccCCccccHHHHH
Confidence 457889999999984 4443 34776 99999999999999999972 123456699
Q ss_pred HHHHHHhhcccccccccCCCccee---ecccc---CCCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCc
Q 019938 119 CQMLSLVVDHDLDAELDHANGTTI---SECYS---DMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 192 (333)
Q Consensus 119 ~~ml~~i~~~s~~~~~~~~~grle---vGGf~---D~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~ 192 (333)
..|++.+..... ...+|+ .||-+ ......++.....++.|.+.. |.+..-=|++.+.+
T Consensus 103 ~~Li~~m~~~Ga------~~~~l~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~g--I~Iva~DvGG~~gR-------- 166 (213)
T PRK13493 103 EVLINRLLSMGA------ERERLKFKLFGGAHLMGYQSLVGEKNVEFVLEYAKREK--LNVVAQDLGGAQPR-------- 166 (213)
T ss_pred HHHHHHHHHcCC------CHHHeEEEEEeCcccccccccHhHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc--------
Confidence 999999987743 556777 46643 233577888888888887755 44444445555443
Q ss_pred ceEEEEEEEecCCeeecccC
Q 019938 193 PIFHGFLVETCTGSLSPASF 212 (333)
Q Consensus 193 Pii~Gi~VnvkTg~ifpAsF 212 (333)
=|.+++.||++.=-..
T Consensus 167 ----ki~f~~~tG~v~vk~~ 182 (213)
T PRK13493 167 ----KLLFDPQTGQAWVKRI 182 (213)
T ss_pred ----EEEEECCCCEEEEEEc
Confidence 2578899998886555
No 4
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.39 E-value=0.53 Score=42.61 Aligned_cols=127 Identities=9% Similarity=0.110 Sum_probs=89.4
Q ss_pred CeEEEEecceeEee-CCC-ceeeeccCCCceeeEEEEEeCCCCceEEEeccC-----------CcchhhhHHHHHHHhhc
Q 019938 61 SKYVYVFQREYATV-DPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-----------PEIVDIGLCQMLSLVVD 127 (333)
Q Consensus 61 ~~lLYV~QrE~A~~-~P~-~v~~lGSDdATTChivVlR~~~sG~t~laH~Dg-----------s~~v~~~v~~ml~~i~~ 127 (333)
...++|.++|++++ .|. -..+||| |+.|+|.++..+.-.++|+== ....+.++..|++.+..
T Consensus 7 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 81 (167)
T PRK13498 7 TKEIVLQPGEVVFATRPTRLRTLLGS-----CVAITFWHPQQHIGGMCHFMLPGRIRKHQPLDGRYADEAMELLIRHALA 81 (167)
T ss_pred ceEEEEeCCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45789999999998 455 3556786 999999999999999999822 23567899999999988
Q ss_pred ccccccccCCCccee---eccccC---------CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceE
Q 019938 128 HDLDAELDHANGTTI---SECYSD---------MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIF 195 (333)
Q Consensus 128 ~s~~~~~~~~~grle---vGGf~D---------~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii 195 (333)
... ...+|+ .||-+= .....++......+.|++.. |.|..-=+++.+-+
T Consensus 82 ~Ga------~~~~l~aKifGGA~m~~~~~~~~~~~~IG~rNi~~a~~~L~~~g--i~i~a~DvGG~~gR----------- 142 (167)
T PRK13498 82 NGT------PPEDYQVKLFGGGNMFPELQQDLHTLNVADKNIHAALALAEQNG--LHLKAQDLGSTGHR----------- 142 (167)
T ss_pred cCC------CHHHEEEEEEECcccccccccCcccCChHHHHHHHHHHHHHHCC--CcEEEEeCCCCCCc-----------
Confidence 753 556777 455221 22466777777788887755 44444444444332
Q ss_pred EEEEEEecCCeeecccC
Q 019938 196 HGFLVETCTGSLSPASF 212 (333)
Q Consensus 196 ~Gi~VnvkTg~ifpAsF 212 (333)
=+.+++.||++.=-..
T Consensus 143 -~i~f~~~tG~v~vk~~ 158 (167)
T PRK13498 143 -SIIFDLWNGNVWVRHQ 158 (167)
T ss_pred -EEEEECCCCEEEEEEC
Confidence 2568889998864433
No 5
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.24 E-value=0.62 Score=41.75 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=88.6
Q ss_pred EEEEecceeEeeC-CC-ceee-eccCCCceeeEEEEEeCCCCceEEEeccCC-----------cchhhhHHHHHHHhhcc
Q 019938 63 YVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVVDH 128 (333)
Q Consensus 63 lLYV~QrE~A~~~-P~-~v~~-lGSDdATTChivVlR~~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~i~~~ 128 (333)
-++|.++|++++. |. -..+ ||| |+.|+|.++..+.-.++|+==+ ...+.++..|++.+...
T Consensus 3 ~v~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~li~~m~~~ 77 (157)
T PRK13488 3 VIKVGIGEYAVGKSPEVIETSGLGS-----CVGIILYDRGKKIGGLAHVMLPESSGAGDRNPGKYADTAIPLLIEEMVKL 77 (157)
T ss_pred cEEEecCcEEEECCCCEEEEEcCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcccHHHHHHHHHHHHHHc
Confidence 4679999999985 44 3556 776 9999999999999999997322 25677999999999887
Q ss_pred cccccccCCCccee---eccccC------CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEEEE
Q 019938 129 DLDAELDHANGTTI---SECYSD------MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFL 199 (333)
Q Consensus 129 s~~~~~~~~~grle---vGGf~D------~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~Gi~ 199 (333)
.. ...+++ .||-+- ..+..++.....++.|++.. |.+..-=+++.+-+ =+-
T Consensus 78 Ga------~~~~l~akifGGA~m~~~~~~~~~IG~rNi~~a~~~L~~~g--i~i~a~dvGG~~gR------------~i~ 137 (157)
T PRK13488 78 GA------RKSKLEAKLAGGAAMFDFSSNNLNIGERNIESAKETLKKLG--IRIVAEDVGGDYGR------------TVK 137 (157)
T ss_pred CC------CHHHEEEEEEeCcccccCCCccCChHHHHHHHHHHHHHHCC--CcEEEEEcCCCCCc------------EEE
Confidence 53 567788 455332 23456777777788887754 44555555555442 256
Q ss_pred EEecCCeeecccC
Q 019938 200 VETCTGSLSPASF 212 (333)
Q Consensus 200 VnvkTg~ifpAsF 212 (333)
+++.||++.=-..
T Consensus 138 f~~~tG~v~vk~~ 150 (157)
T PRK13488 138 FDLKTGKVIVRKA 150 (157)
T ss_pred EECCCCEEEEEEc
Confidence 8888998865444
No 6
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=94.99 E-value=0.68 Score=43.21 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=92.0
Q ss_pred CeEEEEecceeEee-CCC-ceeeeccCCCceeeEEEEEeCCCCceEEEeccCC-------------cchhhhHHHHHHHh
Q 019938 61 SKYVYVFQREYATV-DPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-------------EIVDIGLCQMLSLV 125 (333)
Q Consensus 61 ~~lLYV~QrE~A~~-~P~-~v~~lGSDdATTChivVlR~~~sG~t~laH~Dgs-------------~~v~~~v~~ml~~i 125 (333)
...++|..+|++++ .|. -..+||| |+.|+|.++..+...|+|+==+ ...+.++..|++.+
T Consensus 21 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~A~~~Li~~m 95 (201)
T PRK13487 21 CDAAKILPGEYFVTDDDTAIVTVLGS-----CVSACLRDPVLGIGGMNHFMLPDGGDSDGPLSASARYGSYAMELLINDL 95 (201)
T ss_pred cceEEEecCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 44678999999998 565 3456776 9999999999999999997222 24677999999999
Q ss_pred hcccccccccCCCccee---eccccC-----CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEE
Q 019938 126 VDHDLDAELDHANGTTI---SECYSD-----MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHG 197 (333)
Q Consensus 126 ~~~s~~~~~~~~~grle---vGGf~D-----~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~G 197 (333)
..... ...+|+ .||-+- ..+...+.....++.|++.. |.+..-=|++.+-+ =
T Consensus 96 ~~~Ga------~~~~l~aKlfGGA~m~~~~~~~~IG~rNi~~a~~~L~~~g--I~iva~DvGG~~gR------------~ 155 (201)
T PRK13487 96 LKLGA------RRENLEAKVFGGGNVLRGFTSMNVGERNAEFVRDYLQTER--IPIVAEDLLDIYPR------------K 155 (201)
T ss_pred HHcCC------CHHHEEEEEEeCCcccCCCccCCchHHHHHHHHHHHHHcC--CcEEEEECCCCCCc------------E
Confidence 88753 556777 455432 23577788888888887754 55565556665553 2
Q ss_pred EEEEecCCeeecccC
Q 019938 198 FLVETCTGSLSPASF 212 (333)
Q Consensus 198 i~VnvkTg~ifpAsF 212 (333)
|.+++.||++.=-..
T Consensus 156 v~f~~~tG~v~vk~~ 170 (201)
T PRK13487 156 VYFFPTTGKVLVKKL 170 (201)
T ss_pred EEEECCCCEEEEEEC
Confidence 678999999875544
No 7
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=94.42 E-value=0.47 Score=44.36 Aligned_cols=128 Identities=9% Similarity=0.034 Sum_probs=89.7
Q ss_pred CCeEEEEecceeEee-CCCc--eeeeccCCCceeeEEEEEeCCCCceEEEeccC----------CcchhhhHHHHHHHhh
Q 019938 60 PSKYVYVFQREYATV-DPAL--VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN----------PEIVDIGLCQMLSLVV 126 (333)
Q Consensus 60 ~~~lLYV~QrE~A~~-~P~~--v~~lGSDdATTChivVlR~~~sG~t~laH~Dg----------s~~v~~~v~~ml~~i~ 126 (333)
....++|.++|++++ .|.. --+||| |+.|+|.++..+.-.|+|+== ....+.++..|++.+.
T Consensus 12 ~~~~v~V~~Ge~~vs~~p~~litT~LGS-----CVaV~LyDp~~~IGGM~H~mLP~~~~~~~~~~rYgd~Ai~~Li~~m~ 86 (199)
T PRK13491 12 QISITHVTQGSCVASDSPNEVYATILGS-----CICTCMCDPVAGVGGMNHFLLPSADVEDAQHLRYGSHAMELLINALL 86 (199)
T ss_pred eEEEEEEecCcEEEECCCCEEEEEeccc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 356899999999998 5653 345786 999999999999999999832 2356789999999998
Q ss_pred cccccccccCCCccee---eccccC---CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEEEEE
Q 019938 127 DHDLDAELDHANGTTI---SECYSD---MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLV 200 (333)
Q Consensus 127 ~~s~~~~~~~~~grle---vGGf~D---~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~Gi~V 200 (333)
.... ...+|+ .||-.= .....++.....++.|.+.. |.|.--=+++.+-+ =|.+
T Consensus 87 ~~Ga------~~~~L~AKifGGA~M~~~~~~IG~rNie~a~~~L~~~G--I~ivaeDvGG~~gR------------kI~f 146 (199)
T PRK13491 87 KLGA------ARQRIEAKIFGGAMMTPQLGAIGQANAAFARRYLRDEG--IRCTAHSLGGNRAR------------RIRF 146 (199)
T ss_pred HcCC------CHHHeEEEEEeCcccccccccHHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc------------EEEE
Confidence 8743 567888 466432 23355666677777777654 44444445543332 3678
Q ss_pred EecCCeeecccC
Q 019938 201 ETCTGSLSPASF 212 (333)
Q Consensus 201 nvkTg~ifpAsF 212 (333)
++.||++.=-..
T Consensus 147 ~~~tG~v~vk~~ 158 (199)
T PRK13491 147 WPKTGRVQQMFL 158 (199)
T ss_pred ECCCCEEEEEEc
Confidence 899998875444
No 8
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=94.37 E-value=0.48 Score=43.65 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=89.1
Q ss_pred CCeEEEEecceeEee-CCC-ce-eeeccCCCceeeEEEEEeCCCCceEEEeccC-------------CcchhhhHHHHHH
Q 019938 60 PSKYVYVFQREYATV-DPA-LV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (333)
Q Consensus 60 ~~~lLYV~QrE~A~~-~P~-~v-~~lGSDdATTChivVlR~~~sG~t~laH~Dg-------------s~~v~~~v~~ml~ 123 (333)
-.+-++|.++|++++ .|. .+ .+||| |+.|+|.++..+...++|+== ....+.++..|++
T Consensus 6 ~~~~v~v~~Ge~~v~~~p~~~itt~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~ai~~Li~ 80 (184)
T PRK13497 6 AARRVHIIQGEYKVVNDPNVVLSTILGS-----CVAACLRDPVAGVGGMNHFLLPGSATSPTSGGDATRYGVHLMELLIN 80 (184)
T ss_pred cCceEEEecCcEEEECCCCEEEEEeCcc-----ceEEEEEcCCCCEEEEEEEECCCCCCcCCCCCCccchHHHHHHHHHH
Confidence 456899999999998 555 33 45886 999999999999999999711 2246779999999
Q ss_pred HhhcccccccccCCCccee---ecccc---CCCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEE
Q 019938 124 LVVDHDLDAELDHANGTTI---SECYS---DMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHG 197 (333)
Q Consensus 124 ~i~~~s~~~~~~~~~grle---vGGf~---D~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~G 197 (333)
.+..... ...+|+ .||-+ ......++.....++.|.+... .+.--=+++.+-+ =
T Consensus 81 ~m~~~Ga------~~~~l~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~gI--~i~a~DvGG~~gR------------~ 140 (184)
T PRK13497 81 GLLKQGA------RRDRLEAKIFGGAKTIATFSNVGEQNAAFAMQFLRDEGI--PVVGSSTGGEHGR------------K 140 (184)
T ss_pred HHHHcCC------CHHHEEEEEEeCchhccccccHHHHHHHHHHHHHHHcCC--cEEEEeCCCCCCc------------E
Confidence 9988753 566777 56633 3345677777777888877554 3333334444332 2
Q ss_pred EEEEecCCeeecccC
Q 019938 198 FLVETCTGSLSPASF 212 (333)
Q Consensus 198 i~VnvkTg~ifpAsF 212 (333)
+-+++.||++.=-..
T Consensus 141 v~f~~~tG~v~~k~~ 155 (184)
T PRK13497 141 LEYWPVSGRARQYPL 155 (184)
T ss_pred EEEECCCCeEEEEEc
Confidence 567778887764433
No 9
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=94.09 E-value=0.63 Score=41.86 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=85.6
Q ss_pred EEEecceeEee-CCC-ceee-eccCCCceeeEEEEEeCCCCceEEEeccC-----------CcchhhhHHHHHHHhhccc
Q 019938 64 VYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN-----------PEIVDIGLCQMLSLVVDHD 129 (333)
Q Consensus 64 LYV~QrE~A~~-~P~-~v~~-lGSDdATTChivVlR~~~sG~t~laH~Dg-----------s~~v~~~v~~ml~~i~~~s 129 (333)
+||.++|+++. .|. -..+ ||| |+.|+|.++..+...|+|+== ....+.++..|++.+....
T Consensus 4 v~v~~Ge~~v~~~p~~l~T~~LGS-----CVaV~l~Dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~Li~~m~~~G 78 (159)
T PRK13495 4 KVIGIGEYAVMKNPGVIVTLGLGS-----CVGVCMRDPVAKVGAMAHVMLPDSGGKETDKPGKYADTAIKTLVEELKKMG 78 (159)
T ss_pred EEEecCcEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHcC
Confidence 68999999998 565 3554 786 999999999999999999721 2356789999999998875
Q ss_pred ccccccCCCccee---eccccC----CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEEEEEEe
Q 019938 130 LDAELDHANGTTI---SECYSD----MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVET 202 (333)
Q Consensus 130 ~~~~~~~~~grle---vGGf~D----~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~Gi~Vnv 202 (333)
. ...+++ .||-+- .....++......+.|.+.. |.+..-=+++..-| =+-+++
T Consensus 79 a------~~~~l~aKifGGA~m~~~~~~~IG~rNi~~a~~~L~~~g--I~i~a~dvGG~~gR------------~i~f~~ 138 (159)
T PRK13495 79 A------KVERLEAKIAGGASMFESSGMNIGARNVEAVKKHLKDFG--IKLVAEDTGGNRAR------------SIEYNI 138 (159)
T ss_pred C------CHHHEEEEEEeCCccCCCCCCChHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc------------EEEEEC
Confidence 3 556777 455332 23456677777777777654 33444444543332 256788
Q ss_pred cCCeeecccC
Q 019938 203 CTGSLSPASF 212 (333)
Q Consensus 203 kTg~ifpAsF 212 (333)
.||++.=-..
T Consensus 139 ~tG~v~vk~~ 148 (159)
T PRK13495 139 ETGKLLVRKV 148 (159)
T ss_pred CCCEEEEEEc
Confidence 8888764443
No 10
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.92 E-value=0.18 Score=45.83 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=70.5
Q ss_pred CCeEEEEecceeEeeCC-C--ceeeeccCCCceeeEEEEEeCCCCceEEEecc-------------CCcchhhhHHHHHH
Q 019938 60 PSKYVYVFQREYATVDP-A--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMD-------------NPEIVDIGLCQMLS 123 (333)
Q Consensus 60 ~~~lLYV~QrE~A~~~P-~--~v~~lGSDdATTChivVlR~~~sG~t~laH~D-------------gs~~v~~~v~~ml~ 123 (333)
..+.+=|-|+||+++.. . ....||| |+.|+||...+|...++|+= .+...+.++..|++
T Consensus 6 ~~~~v~Vg~ge~~v~~~p~~i~ttgLGS-----CV~v~l~D~~~~vgGm~H~mLP~s~~~~~~~~~~~kY~d~ame~Lin 80 (164)
T COG1871 6 ARKEVKVGIGEYKVTKDPDVIITTGLGS-----CVGVCLRDPVNGVGGMNHFMLPDSALSGSPLSNPAKYGDTAMELLIN 80 (164)
T ss_pred hCCEEEEeeeeEEEecCCCEEEEecccc-----eEEEEEEccccCccceeEEeccCCCCCCCcCCchhhHHHHHHHHHHH
Confidence 46678899999999964 5 3778886 99999999999999999972 22345568888888
Q ss_pred HhhcccccccccCCCccee---ecccc-----CCCCCCHHHHHHHHHHHhcc
Q 019938 124 LVVDHDLDAELDHANGTTI---SECYS-----DMDGYSLPLCRKLVDTLQRR 167 (333)
Q Consensus 124 ~i~~~s~~~~~~~~~grle---vGGf~-----D~~g~S~~L~~~lL~~f~~~ 167 (333)
.+-.... .+-||| .||-. +.-...++...-+++.|.+.
T Consensus 81 ~ll~~GA------~r~rL~AKlfGGa~mf~~~s~m~IG~rNv~~~~~~L~~~ 126 (164)
T COG1871 81 ELLKLGA------SRERLEAKLFGGAQMFAFNSMMKIGERNVEFAKEFLKDE 126 (164)
T ss_pred HHHHcCC------ChhhheeeecccHHHHhccchhhhhhHHHHHHHHHHHHc
Confidence 8877743 567888 56632 32345566666666666653
No 11
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=92.50 E-value=0.62 Score=42.16 Aligned_cols=124 Identities=9% Similarity=0.069 Sum_probs=85.6
Q ss_pred CeEEEEecceeEeeCCC-ceeeeccCCCceeeEEEEEeCCCCceEEEeccCC------------cchhhhHHHHHHHhhc
Q 019938 61 SKYVYVFQREYATVDPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP------------EIVDIGLCQMLSLVVD 127 (333)
Q Consensus 61 ~~lLYV~QrE~A~~~P~-~v~~lGSDdATTChivVlR~~~sG~t~laH~Dgs------------~~v~~~v~~ml~~i~~ 127 (333)
.-.+|++++|+++..+. -..+||| |+.|+|.++..+.-.++|+==| ...+.++..|++.+..
T Consensus 11 ~~~~~l~~Ge~~v~~~~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 85 (163)
T PRK13494 11 RDVTIIVPGEAFVSNDRVISTILGS-----CVAVVLYDESRNLIGMNHYVLVKSDLVISPLQRGRYGVYAIPMLIDAMLE 85 (163)
T ss_pred ccEEEEecCeEEEeCCcEEEEeCcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 34678999999999875 2455775 9999999999999999997333 2467799999999988
Q ss_pred ccccccccCCCccee---eccccC----CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEEEEE
Q 019938 128 HDLDAELDHANGTTI---SECYSD----MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLV 200 (333)
Q Consensus 128 ~s~~~~~~~~~grle---vGGf~D----~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~Gi~V 200 (333)
... ...+++ .||-.- ......+...-.++.|.+.. |.+.--=+++.+-| =+-+
T Consensus 86 ~Ga------~~~~l~aKifGGa~m~~~~~~~IG~rNv~~a~~~L~~~g--I~i~a~DvGG~~gR------------~i~f 145 (163)
T PRK13494 86 NGA------SKSNLKAKLFGGTNFMAKGTIKVGLENSEFAVNTLNKYG--IPILAKDFDQSKSR------------KIFV 145 (163)
T ss_pred cCC------CHHHeEEEEEeCcccCCcccCChHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc------------EEEE
Confidence 753 456777 455331 23456677777777777654 44444445544332 2557
Q ss_pred EecCCeeec
Q 019938 201 ETCTGSLSP 209 (333)
Q Consensus 201 nvkTg~ifp 209 (333)
++.||++.=
T Consensus 146 ~~~tG~v~v 154 (163)
T PRK13494 146 FPENFKVIV 154 (163)
T ss_pred ECCCCEEEE
Confidence 777887753
No 12
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=92.47 E-value=1.3 Score=42.32 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=89.3
Q ss_pred CeEEEEecceeEeeCCC-c-eeeeccCCCceeeEEEEEeCCCCceEEEeccC--------------CcchhhhHHHHHHH
Q 019938 61 SKYVYVFQREYATVDPA-L-VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN--------------PEIVDIGLCQMLSL 124 (333)
Q Consensus 61 ~~lLYV~QrE~A~~~P~-~-v~~lGSDdATTChivVlR~~~sG~t~laH~Dg--------------s~~v~~~v~~ml~~ 124 (333)
...++|.++||+++.+. . ..+||| |+.|+|+++..+.-.|.|+== ....+.++..|++.
T Consensus 18 ~~~v~l~pGE~~Vs~~~~vItTvLGS-----CVaV~LyDp~~~IGGM~HfmLP~~~~~~~~~~~~~~rYgd~Ame~Li~~ 92 (233)
T PRK13489 18 RPGVKLLPNEFYTTREDMVLVTVLGS-----CVAACLHDPVAGIGGMNHFMLPDDGADAGAAASESMRYGAYAMEVLINE 92 (233)
T ss_pred cceEEEecCeEEEeCCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEECCCCcccCccCCCCCcccHHHHHHHHHHH
Confidence 44788999999999764 2 445776 999999999999999999721 13567799999999
Q ss_pred hhcccccccccCCCccee---eccccC-----CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEE
Q 019938 125 VVDHDLDAELDHANGTTI---SECYSD-----MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFH 196 (333)
Q Consensus 125 i~~~s~~~~~~~~~grle---vGGf~D-----~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~ 196 (333)
+...+. ...+|+ .||-.- ...+.+....-.++.|.+.. |.|..-=|++..-+
T Consensus 93 m~~~Ga------~r~~L~AKifGGA~m~~~~~~~~IG~RNieaa~~~L~~~g--I~IvaeDvGG~~gR------------ 152 (233)
T PRK13489 93 LIKAGG------RRERFEAKVFGGAAVLAGMTTINIGDRNADFVRRYLALER--IRITAEDLQGVHPR------------ 152 (233)
T ss_pred HHHcCC------CHHHEEEEEEECccccCCCCcCChhHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc------------
Confidence 988753 567788 455432 23566777777777777754 44444444443321
Q ss_pred EEEEEecCCeeecccCC
Q 019938 197 GFLVETCTGSLSPASFD 213 (333)
Q Consensus 197 Gi~VnvkTg~ifpAsF~ 213 (333)
=|.+++.||++.=-...
T Consensus 153 kV~f~~~TG~v~Vk~~~ 169 (233)
T PRK13489 153 KVAFMPRTGRAMVKKLR 169 (233)
T ss_pred EEEEECCCCEEEEEEcC
Confidence 25678888888766553
No 13
>PRK00766 hypothetical protein; Provisional
Probab=32.29 E-value=1.1e+02 Score=28.65 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=31.4
Q ss_pred eeeeccCCCc-------eeeEEEEEeCCCCc-----eEEEeccCCcchhhhHHHHHHH
Q 019938 79 VDYVGTDEAT-------TCVGLVIRNRRNRM-----TSIAHMDNPEIVDIGLCQMLSL 124 (333)
Q Consensus 79 v~~lGSDdAT-------TChivVlR~~~sG~-----t~laH~Dgs~~v~~~v~~ml~~ 124 (333)
+.++|=||++ .|.++.+...+++. ..-.-.||.+. -+++.+|+..
T Consensus 9 irvlGidds~f~~~~~~~~~lvGvv~r~~~~idGv~~~~itvdG~Da-T~~i~~mv~~ 65 (194)
T PRK00766 9 IRVLGIDDGTFLFKSSEKVILVGVVMRGGDWVDGVLSRWITVDGLDA-TEAIIEMVNS 65 (194)
T ss_pred ceEEEEecCccccCCCCCEEEEEEEEECCeEEeeEEEEEEEECCccH-HHHHHHHHHh
Confidence 6677777763 46666666666443 47777899988 7788888865
No 14
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=28.33 E-value=1.7e+02 Score=27.39 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=38.9
Q ss_pred ceeeeccCCCc------eeeEEEEEeCCCC-----ceEEEeccCCcchhhhHHHHHHHhhcc
Q 019938 78 LVDYVGTDEAT------TCVGLVIRNRRNR-----MTSIAHMDNPEIVDIGLCQMLSLVVDH 128 (333)
Q Consensus 78 ~v~~lGSDdAT------TChivVlR~~~sG-----~t~laH~Dgs~~v~~~v~~ml~~i~~~ 128 (333)
-+.++|-||+. -|.+|-..-++++ +.+..-.||-+. -++++.|++.....
T Consensus 8 ~irvlG~DD~~f~~~~~~~~~vG~v~r~~~~v~gv~~~~i~vDG~D~-T~~i~~~v~~~~~~ 68 (185)
T COG1628 8 EIRVLGIDDGPFSRGDDKVTLVGVVMRGDRVVDGVAFSLITVDGLDV-TDAISDMVNRSKRR 68 (185)
T ss_pred ceEEEEEecCccCCCCceEEEEEEEEECCeEEEeeEEEEEEecCchH-HHHHHHHHHHhhcc
Confidence 37788888876 5666666666765 578889999998 78999999888754
No 15
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=22.62 E-value=64 Score=25.16 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=33.4
Q ss_pred eeeCCeeeecCCCCC------CCCCCchhHHHHHHHhC-chHHHhhhhhccC
Q 019938 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSM 46 (333)
Q Consensus 2 l~v~g~~~~~~~~~~------~~~~~~~~~ll~~~~~h-P~l~~~a~~l~~~ 46 (333)
..|||..|.|.=|.. ...+....++|++|..| ..|.++|.++...
T Consensus 21 a~~~g~~i~C~Is~~aL~~~~~~~~~~~~~~l~~F~~~R~~Ie~~Ae~~i~~ 72 (83)
T PF07369_consen 21 AQVDGMQIRCAISAEALEDLFGARGASEEDLLAAFDRHRFDIEEAAERLIEQ 72 (83)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTS---SHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred EEECCEEEEEEEeHHHHHhhhCcCCCCHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 468999999875542 12567789999999999 8888888888766
No 16
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=22.49 E-value=1.1e+02 Score=23.16 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=23.7
Q ss_pred CHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCC
Q 019938 274 SDEEILRRCSTSPSAEGPDFVENLRRQWNYLIKRPD 309 (333)
Q Consensus 274 sD~~iL~~lSTSP~aEpPhFv~~iR~tl~fl~~hP~ 309 (333)
+-+-+.+.|.=.|.. +.-+-+|++|+|.++||+
T Consensus 28 d~~kA~~~LgW~p~~---~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKY---SLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp --HHHHHHC----SS---SHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHhCCCcCC---CHHHHHHHHHHHHHHCcC
Confidence 456677888888887 788899999999999997
No 17
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=21.21 E-value=34 Score=30.63 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=32.3
Q ss_pred eEEEEEeCCCCceEEEeccCCcchhhhHHHHHHHhhcccccccccCCCcceee
Q 019938 91 VGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDHANGTTIS 143 (333)
Q Consensus 91 hivVlR~~~sG~t~laH~Dgs~~v~~~v~~ml~~i~~~s~~~~~~~~~grlev 143 (333)
+|||+=|+++|++..+ .++..|...++.+...+.-..--+.+|++.+
T Consensus 93 ~IvV~GHt~CG~~~a~------~~~~nV~~~v~~L~~~p~i~~~~~~~g~l~v 139 (154)
T cd03378 93 LVVVLGHESCGAVAAA------AVRANVKATVAKLRSRSPIIAELVAAGKLKI 139 (154)
T ss_pred EEEEEcCCCccHHHHH------HHHHHHHHHHHHHHhCCHHHHHHHHcCCcEE
Confidence 8999999999987665 4477888888888776421100125577774
No 18
>COG4848 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.40 E-value=61 Score=31.22 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.3
Q ss_pred ecceeEeeCCC-ceeeec
Q 019938 67 FQREYATVDPA-LVDYVG 83 (333)
Q Consensus 67 ~QrE~A~~~P~-~v~~lG 83 (333)
.|+|+|+++|+ ||-|++
T Consensus 197 ~eGem~vavPHQDVLIia 214 (265)
T COG4848 197 VEGEMAVAVPHQDVLIIA 214 (265)
T ss_pred hcceEEEeccCcceEEEE
Confidence 47999999999 787765
Done!