Query 019938
Match_columns 333
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f9z_C Protein (chemotaxis met 94.2 0.41 1.4E-05 41.8 10.8 125 62-211 3-147 (159)
2 4af3_D Incenp, inner centromer 57.9 3.2 0.00011 31.6 1.0 26 306-331 41-66 (71)
3 2gpi_A Conserved hypothetical 37.5 18 0.00061 28.8 2.4 47 2-48 25-78 (91)
4 2ckc_A Chromodomain-helicase-D 18.9 63 0.0021 25.3 2.3 18 21-38 44-61 (80)
5 3gb3_A Killerred; fluorescent 15.9 62 0.0021 29.9 1.9 26 61-86 207-234 (235)
6 1k4u_P Phagocyte NADPH oxidase 15.9 32 0.0011 22.7 0.1 13 273-285 11-23 (32)
7 4day_C Fanconi anemia group M 15.0 69 0.0023 21.7 1.5 34 241-283 3-36 (37)
8 3lax_A Phenylacetate-coenzyme 14.1 50 0.0017 25.1 0.7 26 1-38 6-31 (109)
9 2cu3_A Unknown function protei 13.0 1.7E+02 0.0059 20.5 3.3 23 1-30 1-23 (64)
10 3iuj_A Prolyl endopeptidase; h 12.9 1.5E+02 0.0053 29.5 4.1 76 249-331 25-115 (693)
No 1
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=94.20 E-value=0.41 Score=41.84 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=86.2
Q ss_pred eEEEEecceeEeeC-CC-ceee-eccCCCceeeEEEEEeCCCCceEEEecc---C-------CcchhhhHHHHHHHhhcc
Q 019938 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMD---N-------PEIVDIGLCQMLSLVVDH 128 (333)
Q Consensus 62 ~lLYV~QrE~A~~~-P~-~v~~-lGSDdATTChivVlR~~~sG~t~laH~D---g-------s~~v~~~v~~ml~~i~~~ 128 (333)
..++|.++||.++. |. -..+ ||| |+.|+|+++..+.-.++|+= . ....+.++..|++.+...
T Consensus 3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~ 77 (159)
T 2f9z_C 3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM 77 (159)
T ss_dssp CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence 45799999999985 55 3556 887 99999999999999999983 2 235667999999999877
Q ss_pred cccccccCCCccee---eccccC----CCCCCHHHHHHHHHHHhccCccEEEeeeeecCCCCcccCCCCCcceEEEEEEE
Q 019938 129 DLDAELDHANGTTI---SECYSD----MDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVE 201 (333)
Q Consensus 129 s~~~~~~~~~grle---vGGf~D----~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii~Gi~Vn 201 (333)
.. ...+|+ .||-.- .....++...-..+.|.+.... +.--=+++..- . =+-++
T Consensus 78 Ga------~~~~L~aKifGGA~m~~~~~~~IG~rNv~~a~~~L~~~gI~--i~aeD~GG~~g----------R--~i~f~ 137 (159)
T 2f9z_C 78 GA------KVERLEAKIAGGASMFESKGMNIGARNVEAVKKHLKDFGIK--LLAEDTGGNRA----------R--SVEYN 137 (159)
T ss_dssp TC------CGGGCEEEEEECCCCSCCCSSCHHHHHHHHHHHHHHHTTCC--EEEEEECCSSC----------E--EEEEE
T ss_pred CC------CHHHEEEEEEeCcccCcccccChHHHHHHHHHHHHHHCCCc--EEEEeCCCCCC----------c--EEEEE
Confidence 43 567888 566432 2346677777778888775543 33333333222 1 15568
Q ss_pred ecCCeeeccc
Q 019938 202 TCTGSLSPAS 211 (333)
Q Consensus 202 vkTg~ifpAs 211 (333)
+.||++.=-+
T Consensus 138 ~~tG~v~vk~ 147 (159)
T 2f9z_C 138 IETGKLLVRK 147 (159)
T ss_dssp TTTTEEEEEC
T ss_pred CCCCEEEEEE
Confidence 8888876444
No 2
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=57.85 E-value=3.2 Score=31.61 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=7.7
Q ss_pred hCCCCCCcCCCCCCceEEeCCCCCee
Q 019938 306 KRPDWRETFPWKQPRVFQRAADGGWR 331 (333)
Q Consensus 306 ~hP~~~~~Fp~~~P~~y~r~~~G~W~ 331 (333)
.-|+.+.+|+++++++.+|+..+.|.
T Consensus 41 ~p~~LeeIF~~~k~r~~kRtSSA~W~ 66 (71)
T 4af3_D 41 LPLDLEDIFKKSKPRYHKRTSSAVWN 66 (71)
T ss_dssp CCCCSTTTCC----------------
T ss_pred CCCCHHHHhCccccccccCCCcccCC
Confidence 34667999999999999999999996
No 3
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=37.50 E-value=18 Score=28.78 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=37.1
Q ss_pred eeeCCeeeecCCCCC------CCCCCchhHHHHHHHhC-chHHHhhhhhccCcc
Q 019938 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSMEE 48 (333)
Q Consensus 2 l~v~g~~~~~~~~~~------~~~~~~~~~ll~~~~~h-P~l~~~a~~l~~~p~ 48 (333)
.+|||.+|.|.=|.. ..++....++|++|..| ..|.+.|+.|.....
T Consensus 25 A~V~G~~i~C~Is~e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~ 78 (91)
T 2gpi_A 25 AQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEA 78 (91)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred EEeCCeEEEEEEEHHHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHccc
Confidence 479999999975433 23356788999999999 899999999987654
No 4
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=18.90 E-value=63 Score=25.32 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.5
Q ss_pred CchhHHHHHHHhCchHHH
Q 019938 21 SQGSDILVALLEHPVLVS 38 (333)
Q Consensus 21 ~~~~~ll~~~~~hP~l~~ 38 (333)
....+|+.||++||.+..
T Consensus 44 P~~KdL~dWLrqhP~y~v 61 (80)
T 2ckc_A 44 PKNKDLVEWLKLHPTYTV 61 (80)
T ss_dssp CBHHHHHHHHHHCTTEEE
T ss_pred ccccCHHHHHHHCCCcEE
Confidence 568999999999998854
No 5
>3gb3_A Killerred; fluorescent protein, genetically encoded photosensitizer, phototoxicity; HET: CRQ; 1.75A {Anthomedusae SP} PDB: 3gl4_A* 4b30_A* 2wiq_A* 2wis_A* 3a8s_A*
Probab=15.87 E-value=62 Score=29.93 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=18.1
Q ss_pred CeEEEEecceeEee--CCCceeeeccCC
Q 019938 61 SKYVYVFQREYATV--DPALVDYVGTDE 86 (333)
Q Consensus 61 ~~lLYV~QrE~A~~--~P~~v~~lGSDd 86 (333)
..-=+|.|.|.|++ .|.-.+-||||+
T Consensus 207 ~~~~~v~l~E~a~A~~~~~~~~~~~~~~ 234 (235)
T 3gb3_A 207 DKRDHVCQREVAYAHSVPRITSAIGSDE 234 (235)
T ss_dssp CCSSEEEEEEEEEEECCCCCSCSCC---
T ss_pred CCCCEEEEEEEEEEEcCCceeecccCCC
Confidence 34458999999998 466688899986
No 6
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=15.87 E-value=32 Score=22.66 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=10.2
Q ss_pred CCHHHHHHhcCCC
Q 019938 273 LSDEEILRRCSTS 285 (333)
Q Consensus 273 ~sD~~iL~~lSTS 285 (333)
-|-++||+.||++
T Consensus 11 Ps~~lIl~RCs~~ 23 (32)
T 1k4u_P 11 PSADLILNRCSES 23 (32)
T ss_dssp CCHHHHHHSSCHH
T ss_pred CCHHHHHHHccHH
Confidence 3578999999974
No 7
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=15.00 E-value=69 Score=21.72 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=26.1
Q ss_pred eeeeeeCCCCeEEeccccccccchhHHhhhccCCHHHHHHhcC
Q 019938 241 LLETYDTQTDRFVIAPCRWTVRKLHIVMSLQQLSDEEILRRCS 283 (333)
Q Consensus 241 l~~iYD~~~~~l~I~Pf~~~p~~~~v~~~L~~~sD~~iL~~lS 283 (333)
+-++||+..+.|.+. .+..|-+ .-+|++|+++-|
T Consensus 3 ~~~~~D~S~~LFSVn--------FDLGf~~-~dSDde~~e~~~ 36 (37)
T 4day_C 3 MEDIFDCSRDLFSVT--------FDLGFCS-PDSDDEILEHTS 36 (37)
T ss_pred cccccccccceEEEE--------ecccccc-CCcchhhhhccC
Confidence 556899999998875 2567777 789999997644
No 8
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=14.15 E-value=50 Score=25.10 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=18.7
Q ss_pred CeeeCCeeeecCCCCCCCCCCchhHHHHHHHhCchHHH
Q 019938 1 MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVS 38 (333)
Q Consensus 1 ~l~v~g~~~~~~~~~~~~~~~~~~~ll~~~~~hP~l~~ 38 (333)
||.|+|..|-+. +.++ .+++||.+.+
T Consensus 6 mIiv~G~nv~P~---------eIE~---vl~~~p~v~~ 31 (109)
T 3lax_A 6 MIILKGVNIFPI---------QIET---ILLQFKELGS 31 (109)
T ss_dssp CEEETTEEECHH---------HHHH---HHHTCTTEEE
T ss_pred EEEECCEEECHH---------HHHH---HHHhCCCccc
Confidence 899999988874 3444 4478887654
No 9
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=13.03 E-value=1.7e+02 Score=20.52 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=17.4
Q ss_pred CeeeCCeeeecCCCCCCCCCCchhHHHHHH
Q 019938 1 MIFVGGLPFSTNNSSWSSSSSQGSDILVAL 30 (333)
Q Consensus 1 ~l~v~g~~~~~~~~~~~~~~~~~~~ll~~~ 30 (333)
||.|||+++..+ . ..-.+||..+
T Consensus 1 ~i~vNg~~~~~~-~------~tv~~ll~~l 23 (64)
T 2cu3_A 1 MVWLNGEPRPLE-G------KTLKEVLEEM 23 (64)
T ss_dssp CEEETTEEECCT-T------CCHHHHHHHH
T ss_pred CEEECCEEEEcC-C------CcHHHHHHHc
Confidence 789999998763 2 4588888665
No 10
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=12.90 E-value=1.5e+02 Score=29.46 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=46.6
Q ss_pred CCeEEecccccccc--chhHHhhhccCCHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCCCcCCC----------
Q 019938 249 TDRFVIAPCRWTVR--KLHIVMSLQQLSDEEILRRCSTSPSAEGPDFVENLRRQWNYLIKRPDWRETFPW---------- 316 (333)
Q Consensus 249 ~~~l~I~Pf~~~p~--~~~v~~~L~~~sD~~iL~~lSTSP~aEpPhFv~~iR~tl~fl~~hP~~~~~Fp~---------- 316 (333)
.+.-+..||.|.-. .+.+..||.++ .+.-.++|+..|. -+.|++-++=+++..+....++.
T Consensus 25 ~g~~~~d~y~wl~~~~~~~~~~~~~~~-n~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~ 97 (693)
T 3iuj_A 25 FGQAVADPYRWLEDDRSPETEAWVKAQ-NAVTQDYLAQIPY------RAAIKEKLAASWNYAKEGAPFREGRYHYFFKND 97 (693)
T ss_dssp TTEEEECTTGGGGCTTSHHHHHHHHHH-HHHHHHHHTTCTT------HHHHHHHHHHHSCCCEECCCEEETTEEEEEEEC
T ss_pred CCccccCCchhhcCCCCHHHHHHHHHH-HHHHHHHHccChh------HHHHHHHHHHhhccccCCCCEEECCEEEEEEEc
Confidence 47889999999654 34678899766 7777888886553 35555555544444332222222
Q ss_pred ---CCCceEEeCCCCCee
Q 019938 317 ---KQPRVFQRAADGGWR 331 (333)
Q Consensus 317 ---~~P~~y~r~~~G~W~ 331 (333)
++|.+|+|+.+|.|+
T Consensus 98 ~~~~~~~~~r~~~~~~~~ 115 (693)
T 3iuj_A 98 GLQNQNVLWRQQEGKPAE 115 (693)
T ss_dssp SSCSSCEEEEECTTSCCE
T ss_pred CCCceeEEEEeCCCCCcE
Confidence 345566665555564
Done!