Query 019939
Match_columns 333
No_of_seqs 317 out of 1549
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 2.4E-66 5.3E-71 515.6 20.0 214 7-232 297-527 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1.3E-61 2.8E-66 451.4 18.9 201 5-220 41-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 1E-48 2.2E-53 337.1 15.5 137 16-164 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 4.1E-37 8.9E-42 275.6 17.1 187 15-229 12-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.7 1.4E-17 3.1E-22 149.8 11.0 146 23-196 26-186 (199)
6 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.5E-09 3.4E-14 76.7 0.7 44 286-329 1-50 (50)
7 KOG4172 Predicted E3 ubiquitin 98.6 2.1E-09 4.6E-14 76.5 -1.9 47 287-333 7-60 (62)
8 KOG0320 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 85.4 3.2 48 286-333 130-186 (187)
9 PLN03208 E3 ubiquitin-protein 98.5 5.7E-08 1.2E-12 87.0 2.8 46 283-328 14-80 (193)
10 PF15227 zf-C3HC4_4: zinc fing 98.5 3.2E-08 6.9E-13 67.7 0.6 33 290-322 1-42 (42)
11 KOG0823 Predicted E3 ubiquitin 98.4 1.5E-07 3.2E-12 86.0 3.8 50 284-333 44-103 (230)
12 cd01461 vWA_interalpha_trypsin 98.4 2.2E-06 4.7E-11 73.9 10.4 131 25-175 18-149 (171)
13 KOG4275 Predicted E3 ubiquitin 98.4 3.3E-08 7.2E-13 92.6 -1.2 49 285-333 298-348 (350)
14 smart00327 VWA von Willebrand 98.4 1.6E-06 3.5E-11 74.3 9.1 134 25-179 17-159 (177)
15 KOG1571 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 91.1 1.8 51 283-333 301-353 (355)
16 KOG0317 Predicted E3 ubiquitin 98.3 2.4E-07 5.2E-12 87.0 2.2 44 285-328 237-285 (293)
17 KOG4265 Predicted E3 ubiquitin 98.3 2.6E-07 5.6E-12 89.2 2.1 49 285-333 288-342 (349)
18 PHA02929 N1R/p28-like protein; 98.3 3E-07 6.6E-12 85.3 1.6 47 285-331 172-231 (238)
19 cd01471 vWA_micronemal_protein 98.2 9E-06 1.9E-10 71.8 10.0 151 27-194 19-178 (186)
20 cd01463 vWA_VGCC_like VWA Volt 98.1 2E-05 4.2E-10 70.2 10.7 132 25-175 29-176 (190)
21 cd01464 vWA_subfamily VWA subf 98.1 1.1E-05 2.4E-10 70.9 8.5 123 27-176 24-159 (176)
22 TIGR00599 rad18 DNA repair pro 98.1 1E-06 2.2E-11 87.4 1.7 49 280-328 19-72 (397)
23 PHA02926 zinc finger-like prot 98.1 8E-07 1.7E-11 80.9 0.9 46 285-330 168-233 (242)
24 PF13639 zf-RING_2: Ring finge 98.1 7.1E-07 1.5E-11 61.2 -0.1 35 289-323 2-44 (44)
25 KOG2164 Predicted E3 ubiquitin 98.1 1.5E-06 3.2E-11 87.3 1.9 42 287-328 186-237 (513)
26 PF13923 zf-C3HC4_2: Zinc fing 98.1 1.2E-06 2.6E-11 58.6 0.8 33 290-322 1-39 (39)
27 cd00198 vWFA Von Willebrand fa 98.0 6.5E-05 1.4E-09 62.3 11.0 133 24-176 15-153 (161)
28 PF14634 zf-RING_5: zinc-RING 98.0 2.1E-06 4.6E-11 59.0 1.5 36 289-324 1-44 (44)
29 cd01450 vWFA_subfamily_ECM Von 98.0 3.3E-05 7.2E-10 65.3 8.3 129 26-175 17-152 (161)
30 smart00504 Ubox Modified RING 97.9 5E-06 1.1E-10 60.8 2.1 42 287-328 1-47 (63)
31 cd01466 vWA_C3HC4_type VWA C3H 97.9 5.2E-05 1.1E-09 65.4 8.7 125 26-175 17-144 (155)
32 cd01454 vWA_norD_type norD typ 97.9 0.00016 3.5E-09 63.3 11.9 135 25-167 17-154 (174)
33 PF13519 VWA_2: von Willebrand 97.9 0.0001 2.3E-09 62.7 10.2 135 16-174 11-147 (172)
34 cd01473 vWA_CTRP CTRP for CS 97.9 0.00025 5.5E-09 63.7 13.1 137 25-176 16-160 (192)
35 cd01482 vWA_collagen_alphaI-XI 97.8 0.00023 5E-09 61.8 10.7 128 25-176 16-151 (164)
36 cd00162 RING RING-finger (Real 97.8 1.5E-05 3.3E-10 53.2 2.3 38 289-326 1-45 (45)
37 PF00097 zf-C3HC4: Zinc finger 97.8 7E-06 1.5E-10 55.2 0.6 33 290-322 1-41 (41)
38 COG5574 PEX10 RING-finger-cont 97.8 1E-05 2.3E-10 75.3 1.8 43 285-327 213-262 (271)
39 KOG0978 E3 ubiquitin ligase in 97.8 7.5E-06 1.6E-10 85.7 0.7 49 285-333 641-697 (698)
40 cd01456 vWA_ywmD_type VWA ywmD 97.7 0.00015 3.2E-09 65.4 8.9 142 23-175 40-189 (206)
41 cd01465 vWA_subgroup VWA subgr 97.7 0.00041 8.8E-09 59.7 11.1 131 26-175 17-150 (170)
42 KOG0287 Postreplication repair 97.7 8.2E-06 1.8E-10 78.2 -0.7 47 282-328 18-69 (442)
43 cd01472 vWA_collagen von Wille 97.6 0.0006 1.3E-08 58.9 10.6 126 25-175 16-150 (164)
44 PF14835 zf-RING_6: zf-RING of 97.6 3.1E-05 6.6E-10 57.4 1.6 43 285-327 5-51 (65)
45 smart00184 RING Ring finger. E 97.6 4.5E-05 9.8E-10 49.1 2.3 33 290-322 1-39 (39)
46 COG5432 RAD18 RING-finger-cont 97.5 2.2E-05 4.8E-10 74.0 0.3 47 282-328 20-71 (391)
47 TIGR03788 marine_srt_targ mari 97.5 0.00051 1.1E-08 72.0 10.4 130 25-175 287-418 (596)
48 PF13445 zf-RING_UBOX: RING-ty 97.5 2.7E-05 6E-10 53.5 0.3 26 290-316 1-31 (43)
49 KOG0311 Predicted E3 ubiquitin 97.5 6.2E-06 1.4E-10 79.5 -4.3 49 281-329 37-92 (381)
50 cd01476 VWA_integrin_invertebr 97.4 0.0021 4.6E-08 55.2 11.4 119 26-166 16-142 (163)
51 cd01470 vWA_complement_factors 97.4 0.0013 2.9E-08 58.7 10.3 137 25-175 16-175 (198)
52 cd01453 vWA_transcription_fact 97.4 0.0018 3.9E-08 57.7 10.7 136 15-174 14-154 (183)
53 PF13768 VWA_3: von Willebrand 97.4 0.00077 1.7E-08 57.6 7.8 127 28-175 18-146 (155)
54 cd01462 VWA_YIEM_type VWA YIEM 97.3 0.0047 1E-07 52.5 11.9 113 28-166 22-135 (152)
55 KOG4628 Predicted E3 ubiquitin 97.2 0.00015 3.3E-09 70.7 2.0 41 288-328 230-279 (348)
56 cd01480 vWA_collagen_alpha_1-V 97.2 0.0025 5.4E-08 56.6 9.5 131 25-175 18-160 (186)
57 cd01467 vWA_BatA_type VWA BatA 97.1 0.0047 1E-07 53.8 10.6 119 25-165 24-142 (180)
58 KOG1785 Tyrosine kinase negati 97.1 0.00013 2.9E-09 71.4 0.7 42 288-329 370-418 (563)
59 COG5540 RING-finger-containing 97.1 0.00017 3.6E-09 68.5 1.3 42 286-327 322-372 (374)
60 cd01474 vWA_ATR ATR (Anthrax T 97.1 0.0027 5.8E-08 56.2 8.5 128 28-175 22-154 (185)
61 cd01475 vWA_Matrilin VWA_Matri 97.1 0.0037 8.1E-08 57.2 9.5 128 24-175 17-155 (224)
62 PF00092 VWA: von Willebrand f 97.0 0.0046 1E-07 53.0 9.1 95 25-128 15-117 (178)
63 PF04564 U-box: U-box domain; 97.0 0.00024 5.3E-09 54.1 0.8 43 286-328 3-51 (73)
64 PTZ00441 sporozoite surface pr 97.0 0.0069 1.5E-07 62.8 11.5 126 24-166 58-189 (576)
65 COG5236 Uncharacterized conser 97.0 0.00092 2E-08 64.6 4.6 53 277-329 51-110 (493)
66 cd01469 vWA_integrins_alpha_su 96.9 0.008 1.7E-07 52.9 10.3 121 24-166 15-143 (177)
67 KOG1100 Predicted E3 ubiquitin 96.9 0.0004 8.7E-09 63.5 2.0 44 290-333 161-206 (207)
68 cd01460 vWA_midasin VWA_Midasi 96.9 0.012 2.7E-07 55.8 11.7 130 13-166 69-205 (266)
69 KOG2879 Predicted E3 ubiquitin 96.9 0.00083 1.8E-08 63.1 3.4 43 285-327 237-287 (298)
70 PRK13685 hypothetical protein; 96.9 0.014 2.9E-07 56.8 11.9 133 15-166 99-239 (326)
71 PF12678 zf-rbx1: RING-H2 zinc 96.8 0.00058 1.2E-08 52.1 1.4 36 288-323 20-73 (73)
72 KOG0804 Cytoplasmic Zn-finger 96.8 0.00075 1.6E-08 67.2 2.4 46 281-326 169-221 (493)
73 cd01477 vWA_F09G8-8_type VWA F 96.7 0.014 3E-07 52.6 10.1 125 24-166 34-172 (193)
74 cd01481 vWA_collagen_alpha3-VI 96.7 0.013 2.8E-07 51.3 9.6 127 24-175 15-153 (165)
75 cd01451 vWA_Magnesium_chelatas 96.7 0.033 7.2E-07 48.9 11.9 131 25-175 17-154 (178)
76 COG5243 HRD1 HRD ubiquitin lig 96.6 0.001 2.2E-08 64.9 2.3 42 285-326 285-344 (491)
77 PF09967 DUF2201: VWA-like dom 96.6 0.012 2.7E-07 49.4 8.3 107 25-173 14-124 (126)
78 KOG4159 Predicted E3 ubiquitin 96.5 0.00084 1.8E-08 66.9 1.0 46 283-328 80-130 (398)
79 PF14447 Prok-RING_4: Prokaryo 96.4 0.0019 4E-08 46.5 2.0 43 286-328 6-51 (55)
80 KOG4692 Predicted E3 ubiquitin 96.4 0.00098 2.1E-08 64.6 0.7 44 285-328 420-468 (489)
81 cd01458 vWA_ku Ku70/Ku80 N-ter 96.1 0.15 3.3E-06 46.3 13.0 139 24-171 23-180 (218)
82 cd01452 VWA_26S_proteasome_sub 96.0 0.075 1.6E-06 47.9 10.7 152 16-193 15-174 (187)
83 KOG0802 E3 ubiquitin ligase [P 95.9 0.0026 5.7E-08 66.1 0.8 42 285-326 289-340 (543)
84 KOG3002 Zn finger protein [Gen 95.6 0.0058 1.3E-07 58.8 1.8 46 283-328 44-92 (299)
85 COG5152 Uncharacterized conser 95.5 0.0063 1.4E-07 54.8 1.5 42 287-328 196-242 (259)
86 KOG1039 Predicted E3 ubiquitin 95.5 0.0056 1.2E-07 60.0 1.3 46 285-330 159-224 (344)
87 KOG0826 Predicted E3 ubiquitin 95.4 0.012 2.6E-07 56.7 3.1 49 285-333 298-354 (357)
88 KOG2660 Locus-specific chromos 95.3 0.0043 9.2E-08 59.8 -0.4 48 283-330 11-64 (331)
89 TIGR02031 BchD-ChlD magnesium 95.2 0.21 4.6E-06 52.5 12.1 142 24-177 422-572 (589)
90 PF12861 zf-Apc11: Anaphase-pr 95.1 0.012 2.6E-07 46.2 1.7 41 287-327 21-82 (85)
91 PRK13406 bchD magnesium chelat 95.1 0.28 6E-06 51.6 12.3 151 25-194 417-570 (584)
92 PF05762 VWA_CoxE: VWA domain 94.6 0.35 7.7E-06 44.4 10.5 89 26-125 72-160 (222)
93 KOG1813 Predicted E3 ubiquitin 94.6 0.015 3.3E-07 55.3 1.3 42 288-329 242-288 (313)
94 PF14570 zf-RING_4: RING/Ubox 94.5 0.012 2.7E-07 41.3 0.3 37 290-326 1-47 (48)
95 KOG0825 PHD Zn-finger protein 94.4 0.022 4.7E-07 60.4 2.0 46 285-330 121-174 (1134)
96 TIGR03436 acidobact_VWFA VWFA- 94.3 0.44 9.6E-06 45.2 10.8 120 25-165 68-204 (296)
97 cd01455 vWA_F11C1-5a_type Von 94.0 0.34 7.4E-06 43.8 8.8 135 26-175 25-162 (191)
98 KOG3039 Uncharacterized conser 94.0 0.031 6.8E-07 52.0 2.0 44 286-329 220-272 (303)
99 KOG2177 Predicted E3 ubiquitin 93.8 0.023 5.1E-07 52.0 0.9 25 300-324 27-55 (386)
100 KOG0297 TNF receptor-associate 93.7 0.047 1E-06 54.6 2.9 45 284-328 18-68 (391)
101 PF04641 Rtf2: Rtf2 RING-finge 93.5 0.055 1.2E-06 51.0 2.8 45 284-328 110-162 (260)
102 TIGR02442 Cob-chelat-sub cobal 93.3 0.78 1.7E-05 48.7 11.5 133 25-174 482-621 (633)
103 KOG1002 Nucleotide excision re 93.3 0.022 4.8E-07 58.0 -0.3 44 284-327 533-586 (791)
104 COG5175 MOT2 Transcriptional r 93.1 0.034 7.3E-07 53.9 0.6 43 286-328 13-65 (480)
105 PRK10997 yieM hypothetical pro 93.0 1.8 4E-05 44.5 13.1 126 26-175 342-468 (487)
106 TIGR00868 hCaCC calcium-activa 91.8 1.3 2.8E-05 48.6 10.8 111 41-175 338-450 (863)
107 KOG0828 Predicted E3 ubiquitin 91.4 0.056 1.2E-06 54.7 -0.1 42 286-327 570-634 (636)
108 KOG1001 Helicase-like transcri 90.9 0.076 1.6E-06 56.6 0.4 40 288-328 455-501 (674)
109 KOG1734 Predicted RING-contain 90.4 0.15 3.3E-06 48.1 1.8 43 286-328 223-282 (328)
110 KOG2932 E3 ubiquitin ligase in 90.1 0.19 4.1E-06 48.4 2.1 41 288-328 90-135 (389)
111 COG4245 TerY Uncharacterized p 88.5 1.1 2.3E-05 40.6 5.6 76 87-175 71-159 (207)
112 COG5222 Uncharacterized conser 88.3 0.21 4.5E-06 47.9 1.1 37 288-324 275-318 (427)
113 KOG1814 Predicted E3 ubiquitin 88.2 0.2 4.4E-06 49.8 1.0 28 287-314 184-215 (445)
114 COG2425 Uncharacterized protei 86.4 4 8.7E-05 41.5 9.0 96 45-162 309-405 (437)
115 PF10367 Vps39_2: Vacuolar sor 85.5 0.47 1E-05 37.8 1.6 31 285-315 76-109 (109)
116 PF11789 zf-Nse: Zinc-finger o 85.5 0.38 8.2E-06 35.0 0.9 36 286-321 10-53 (57)
117 COG1240 ChlD Mg-chelatase subu 85.2 5.4 0.00012 37.7 8.7 78 84-167 143-224 (261)
118 COG5219 Uncharacterized conser 85.0 0.22 4.7E-06 54.2 -0.7 45 284-328 1466-1524(1525)
119 PF11793 FANCL_C: FANCL C-term 83.5 0.28 6.1E-06 37.1 -0.5 42 287-328 2-67 (70)
120 PF11775 CobT_C: Cobalamin bio 82.8 3.8 8.3E-05 37.8 6.5 51 113-165 134-187 (219)
121 PF05290 Baculo_IE-1: Baculovi 82.7 0.44 9.6E-06 40.5 0.3 43 287-329 80-134 (140)
122 KOG1493 Anaphase-promoting com 80.8 0.31 6.6E-06 37.6 -1.2 40 288-327 32-81 (84)
123 KOG4445 Uncharacterized conser 79.4 0.33 7.2E-06 46.5 -1.7 41 287-327 115-186 (368)
124 KOG1428 Inhibitor of type V ad 78.3 0.76 1.7E-05 52.3 0.4 45 285-329 3484-3546(3738)
125 PF03854 zf-P11: P-11 zinc fin 77.3 1.1 2.3E-05 31.5 0.7 42 289-331 4-50 (50)
126 PF10272 Tmpp129: Putative tra 76.4 1.9 4E-05 42.8 2.5 25 304-328 311-352 (358)
127 KOG2114 Vacuolar assembly/sort 73.0 1.6 3.5E-05 47.3 1.1 41 288-328 841-884 (933)
128 KOG4362 Transcriptional regula 71.7 1.1 2.3E-05 47.7 -0.6 44 285-328 19-70 (684)
129 KOG3579 Predicted E3 ubiquitin 70.2 3.5 7.5E-05 39.5 2.5 29 286-314 267-300 (352)
130 PHA03096 p28-like protein; Pro 65.9 1.9 4.1E-05 41.4 -0.1 28 288-315 179-215 (284)
131 smart00744 RINGv The RING-vari 65.5 3.3 7.1E-05 29.0 1.1 35 289-323 1-49 (49)
132 COG5194 APC11 Component of SCF 65.3 3.2 6.8E-05 32.4 1.0 40 288-327 32-81 (88)
133 PF07975 C1_4: TFIIH C1-like d 64.1 6.3 0.00014 28.1 2.3 21 303-323 26-50 (51)
134 PF05883 Baculo_RING: Baculovi 63.0 2.1 4.5E-05 36.5 -0.4 30 287-316 26-65 (134)
135 KOG0298 DEAD box-containing he 62.0 1.5 3.2E-05 49.5 -1.8 40 286-325 1152-1197(1394)
136 TIGR01651 CobT cobaltochelatas 60.5 22 0.00048 37.6 6.4 63 100-165 501-567 (600)
137 KOG3799 Rab3 effector RIM1 and 60.1 3.5 7.7E-05 35.2 0.5 40 285-326 63-117 (169)
138 PF07191 zinc-ribbons_6: zinc- 60.0 1.8 3.8E-05 32.9 -1.2 38 287-327 1-41 (70)
139 KOG2817 Predicted E3 ubiquitin 59.6 3.9 8.4E-05 40.8 0.7 41 286-326 333-384 (394)
140 KOG1952 Transcription factor N 56.5 17 0.00036 39.8 4.8 44 285-328 189-248 (950)
141 COG4548 NorD Nitric oxide redu 54.7 38 0.00082 35.5 6.8 80 89-172 527-607 (637)
142 KOG2353 L-type voltage-depende 53.1 1.1E+02 0.0024 35.0 10.7 131 26-172 242-382 (1104)
143 PF02891 zf-MIZ: MIZ/SP-RING z 52.0 9.4 0.0002 26.8 1.5 38 288-325 3-50 (50)
144 KOG2068 MOT2 transcription fac 48.1 13 0.00028 36.3 2.3 43 287-329 249-300 (327)
145 COG1488 PncB Nicotinic acid ph 48.0 77 0.0017 32.0 7.9 61 86-165 264-324 (405)
146 KOG2807 RNA polymerase II tran 47.5 13 0.00027 36.4 2.1 37 287-323 330-374 (378)
147 COG4822 CbiK Cobalamin biosynt 45.6 76 0.0017 29.6 6.7 121 25-166 118-242 (265)
148 KOG1812 Predicted E3 ubiquitin 45.4 9.5 0.00021 38.2 0.9 30 286-315 145-179 (384)
149 KOG1941 Acetylcholine receptor 45.1 5.8 0.00013 39.6 -0.6 39 286-324 364-413 (518)
150 PF14569 zf-UDP: Zinc-binding 45.1 15 0.00032 28.5 1.7 43 286-328 8-63 (80)
151 PF02601 Exonuc_VII_L: Exonucl 44.9 67 0.0015 30.8 6.7 83 72-165 25-116 (319)
152 KOG1940 Zn-finger protein [Gen 42.4 6 0.00013 37.8 -0.9 40 290-330 161-209 (276)
153 PF03731 Ku_N: Ku70/Ku80 N-ter 42.1 2.5E+02 0.0055 25.0 10.9 140 15-164 10-173 (224)
154 KOG2113 Predicted RNA binding 41.3 19 0.00041 35.1 2.2 44 288-331 344-391 (394)
155 KOG1924 RhoA GTPase effector D 41.1 53 0.0011 36.0 5.6 18 23-40 266-283 (1102)
156 PF10235 Cript: Microtubule-as 38.2 49 0.0011 26.4 3.7 38 286-327 43-80 (90)
157 PF06415 iPGM_N: BPG-independe 38.0 71 0.0015 29.7 5.4 55 99-164 14-71 (223)
158 PHA02825 LAP/PHD finger-like p 38.0 24 0.00052 31.1 2.2 43 285-327 6-59 (162)
159 KOG2034 Vacuolar sorting prote 35.2 15 0.00032 40.4 0.5 31 284-314 814-847 (911)
160 COG3864 Uncharacterized protei 35.1 30 0.00065 33.9 2.5 50 92-165 325-374 (396)
161 PRK08105 flavodoxin; Provision 35.0 78 0.0017 27.0 4.9 35 136-170 63-99 (149)
162 KOG3899 Uncharacterized conser 34.2 13 0.00027 35.9 -0.2 51 5-55 1-54 (381)
163 KOG3039 Uncharacterized conser 34.1 25 0.00054 33.2 1.7 32 283-314 39-71 (303)
164 PRK00286 xseA exodeoxyribonucl 32.8 1.1E+02 0.0024 30.9 6.3 66 99-177 147-214 (438)
165 KOG3113 Uncharacterized conser 31.3 29 0.00063 32.8 1.7 44 285-328 109-159 (293)
166 KOG2113 Predicted RNA binding 31.3 42 0.00092 32.8 2.8 45 285-329 134-185 (394)
167 KOG3161 Predicted E3 ubiquitin 31.2 21 0.00046 37.9 0.9 24 300-324 29-54 (861)
168 PF04710 Pellino: Pellino; In 31.1 16 0.00035 36.6 0.0 21 36-56 84-104 (416)
169 PF10497 zf-4CXXC_R1: Zinc-fin 30.4 38 0.00083 27.6 2.1 38 287-324 7-69 (105)
170 PF10571 UPF0547: Uncharacteri 30.4 26 0.00056 21.3 0.8 20 289-308 2-24 (26)
171 TIGR00622 ssl1 transcription f 30.3 45 0.00098 27.7 2.5 36 288-323 56-110 (112)
172 PLN02436 cellulose synthase A 29.7 37 0.0008 38.3 2.4 41 287-327 36-89 (1094)
173 COG5148 RPN10 26S proteasome r 29.3 1.3E+02 0.0029 27.4 5.5 72 84-167 74-148 (243)
174 PRK09004 FMN-binding protein M 29.0 1.2E+02 0.0025 25.9 5.0 31 140-170 65-97 (146)
175 PF01363 FYVE: FYVE zinc finge 28.9 18 0.0004 26.5 -0.0 30 285-314 7-41 (69)
176 PF09297 zf-NADH-PPase: NADH p 28.9 14 0.0003 23.3 -0.6 20 305-324 2-29 (32)
177 COG4306 Uncharacterized protei 28.9 20 0.00044 30.4 0.2 23 307-329 29-52 (160)
178 PF10083 DUF2321: Uncharacteri 28.6 17 0.00036 31.9 -0.3 24 306-329 28-52 (158)
179 PLN02189 cellulose synthase 28.5 39 0.00085 38.0 2.4 41 287-327 34-87 (1040)
180 COG3959 Transketolase, N-termi 28.4 59 0.0013 30.4 3.1 34 111-157 138-171 (243)
181 PLN02400 cellulose synthase 28.1 38 0.00081 38.3 2.1 41 287-327 36-89 (1085)
182 cd08550 GlyDH-like Glycerol_de 27.8 1.9E+02 0.0041 28.1 6.9 21 90-110 27-47 (349)
183 PLN02638 cellulose synthase A 27.3 60 0.0013 36.7 3.5 41 287-327 17-70 (1079)
184 COG2816 NPY1 NTP pyrophosphohy 25.9 31 0.00067 33.1 0.9 24 303-326 108-139 (279)
185 COG4867 Uncharacterized protei 25.9 86 0.0019 32.1 4.0 36 94-129 532-567 (652)
186 TIGR02493 PFLA pyruvate format 25.7 3.6E+02 0.0079 24.1 8.0 38 87-127 67-106 (235)
187 KOG0825 PHD Zn-finger protein 25.3 45 0.00098 36.4 2.0 24 303-326 120-153 (1134)
188 PRK13886 conjugal transfer pro 25.1 2.8E+02 0.0061 26.0 7.1 97 71-183 66-180 (241)
189 KOG3970 Predicted E3 ubiquitin 25.0 30 0.00065 32.2 0.6 42 286-327 49-105 (299)
190 TIGR00696 wecB_tagA_cpsF bacte 24.8 4.9E+02 0.011 23.0 9.3 60 88-165 50-110 (177)
191 TIGR00237 xseA exodeoxyribonuc 24.7 1.8E+02 0.004 29.4 6.3 67 98-177 140-209 (432)
192 COG4647 AcxC Acetone carboxyla 24.6 36 0.00079 29.0 1.0 20 291-310 61-81 (165)
193 COG3552 CoxE Protein containin 24.2 3.5E+02 0.0076 27.2 7.8 94 23-128 230-325 (395)
194 PF02318 FYVE_2: FYVE-type zin 24.1 19 0.00041 29.7 -0.8 39 287-325 54-103 (118)
195 KOG1815 Predicted E3 ubiquitin 23.8 40 0.00087 34.3 1.3 30 285-314 68-99 (444)
196 KOG4146 Ubiquitin-like protein 23.4 3.2E+02 0.007 22.0 6.0 64 92-190 33-96 (101)
197 COG5109 Uncharacterized conser 23.0 35 0.00076 33.3 0.7 41 285-325 334-385 (396)
198 PRK08745 ribulose-phosphate 3- 23.0 2.1E+02 0.0046 26.4 5.8 28 118-162 172-199 (223)
199 PF00158 Sigma54_activat: Sigm 22.8 93 0.002 27.2 3.3 25 138-162 5-29 (168)
200 COG4547 CobT Cobalamin biosynt 22.8 79 0.0017 32.6 3.1 68 114-194 536-606 (620)
201 PF06906 DUF1272: Protein of u 22.1 50 0.0011 24.0 1.2 24 306-329 29-54 (57)
202 PRK14057 epimerase; Provisiona 22.1 1.9E+02 0.0041 27.4 5.4 28 118-162 194-221 (254)
203 PF07338 DUF1471: Protein of u 22.0 2.1E+02 0.0045 20.4 4.4 36 88-123 7-43 (56)
204 PRK00979 tetrahydromethanopter 21.8 1.9E+02 0.0042 28.2 5.5 46 99-158 56-101 (308)
205 PF04216 FdhE: Protein involve 20.9 32 0.0007 32.8 -0.0 44 286-329 171-224 (290)
206 PF04423 Rad50_zn_hook: Rad50 20.8 36 0.00078 23.9 0.2 11 318-328 22-32 (54)
207 PF09723 Zn-ribbon_8: Zinc rib 20.7 65 0.0014 21.6 1.4 22 303-324 10-34 (42)
208 KOG3842 Adaptor protein Pellin 20.1 49 0.0011 32.4 1.0 26 300-325 318-350 (429)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-66 Score=515.61 Aligned_cols=214 Identities=48% Similarity=0.770 Sum_probs=196.3
Q ss_pred CCCCCCCCCCccccCC-CCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCC---CCcc--cccCCCCCCCCCHHHHHH
Q 019939 7 PCARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTH---DQEV--FSFYPDEKFCNGFEEVLR 80 (333)
Q Consensus 7 ~~~~~~~~~sLH~~~~-~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~---~~~v--f~~~~~~~~~~G~~gvl~ 80 (333)
+++.+=++.|||||++ .+|+||+||++||++|+.||.|++||+|||||+.+. .+++ ++|+|.|++|.|++|||+
T Consensus 297 SNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~ 376 (529)
T KOG1327|consen 297 SNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLE 376 (529)
T ss_pred cCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHH
Confidence 4455557789999997 789999999999999999999999999999999765 4554 456788999999999999
Q ss_pred HHHHhCCceeecCCCChHHHHHHHHHHHHhcC---CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeE
Q 019939 81 RYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLS 157 (333)
Q Consensus 81 ~Y~~~~~~v~l~gpt~fapvI~~~~~~~~~~~---~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlS 157 (333)
+|++++|+|+|+|||+|+|||++|+++|+++. .+||||||||||+|+| |++|++||+.||++|||
T Consensus 377 aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlS 444 (529)
T KOG1327|consen 377 AYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLS 444 (529)
T ss_pred HHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeE
Confidence 99999999999999999999999999999875 7899999999999998 99999999999999999
Q ss_pred EEEEecccCCCCcccccCCCCCC-------cccceeeeeecccccccccccchhHHHHHHHHHHHhHHHHHHHHHh-ccc
Q 019939 158 IILVGVGDGPWDMMREFDDNIPA-------RAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEF-NIL 229 (333)
Q Consensus 158 ii~VGvGd~~f~~m~~ld~~~~~-------r~~DnvqFv~~~~~~~~~~~~~~~~~~la~~~L~EiP~q~~~~~~~-~~l 229 (333)
||||||||+||+.|++||++.+. |.|||||||+|+|++.++.+.+.++++||+.+|+|||+||++||++ |++
T Consensus 445 IIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~ 524 (529)
T KOG1327|consen 445 IIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDNVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL 524 (529)
T ss_pred EEEEEeCCCCHHHHHHhhcCCcccccccccccccceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 99999999999999999988765 7899999999999998877777889999999999999999999999 555
Q ss_pred ccC
Q 019939 230 GAQ 232 (333)
Q Consensus 230 ~~~ 232 (333)
.++
T Consensus 525 p~~ 527 (529)
T KOG1327|consen 525 PKP 527 (529)
T ss_pred CCC
Confidence 543
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1.3e-61 Score=451.40 Aligned_cols=201 Identities=51% Similarity=0.849 Sum_probs=180.9
Q ss_pred CCCCCCCCCCCCccccCC-CCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCccccc---CCCCCCCCCHHHHHH
Q 019939 5 VGPCARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF---YPDEKFCNGFEEVLR 80 (333)
Q Consensus 5 ~~~~~~~~~~~sLH~~~~-~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~---~~~~~~~~G~~gvl~ 80 (333)
..+++.+-+++||||+++ ..|+||+||++||+||+.||+|++||+||||++.++...++++ ++++|+|.|++||++
T Consensus 41 T~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~ 120 (254)
T cd01459 41 TKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPECQGFEGVLR 120 (254)
T ss_pred CCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCcccCHHHHHH
Confidence 356667778999999987 6899999999999999999999999999999998765555444 578999999999999
Q ss_pred HHHHhCCceeecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEE
Q 019939 81 RYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSI 158 (333)
Q Consensus 81 ~Y~~~~~~v~l~gpt~fapvI~~~~~~~~~~~~--~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSi 158 (333)
+|++++++++|+|||+|+|||++|+++++++.. +|+||||||||+|+| +++|+++|++||++||||
T Consensus 121 aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D------------~~~t~~aIv~AS~~PlSI 188 (254)
T cd01459 121 AYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITD------------MNETIKAIVEASKYPLSI 188 (254)
T ss_pred HHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCccc------------HHHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999986643 499999999999997 999999999999999999
Q ss_pred EEEecccCCCCcccccCC-------CCCCcccceeeeeecccccccccccchhHHHHHHHHHHHhHHHH
Q 019939 159 ILVGVGDGPWDMMREFDD-------NIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQY 220 (333)
Q Consensus 159 i~VGvGd~~f~~m~~ld~-------~~~~r~~DnvqFv~~~~~~~~~~~~~~~~~~la~~~L~EiP~q~ 220 (333)
||||||+++|+.|++||+ +++.|.|||||||+|++++... ..++++||+++|+|||+||
T Consensus 189 iiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~---~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 189 VIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA---GNPEAALATAALAEIPSQL 254 (254)
T ss_pred EEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc---cccHHHHHHHHHHhccccC
Confidence 999999999999999997 3677899999999999997421 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1e-48 Score=337.13 Aligned_cols=137 Identities=47% Similarity=0.879 Sum_probs=128.9
Q ss_pred CccccCC-CCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCC---CcccccC--CCCCCCCCHHHHHHHHHHhCCce
Q 019939 16 SLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD---QEVFSFY--PDEKFCNGFEEVLRRYRELVPHL 89 (333)
Q Consensus 16 sLH~~~~-~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~---~~vf~~~--~~~~~~~G~~gvl~~Y~~~~~~v 89 (333)
||||+++ .+|+||+||++||++|+.||+|++||+|||||+.+++ +++|+|+ +++++|.|++||+++|++++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 8999998 5999999999999999999999999999999998755 5568876 56899999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecc
Q 019939 90 RLAGPTSFAPIIEMAITIVEH---SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVG 164 (333)
Q Consensus 90 ~l~gpt~fapvI~~~~~~~~~---~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvG 164 (333)
+|+|||+|+|||++|++++++ .+.+|+||||||||+|+| +++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567899999999999997 999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=100.00 E-value=4.1e-37 Score=275.64 Aligned_cols=187 Identities=22% Similarity=0.328 Sum_probs=160.7
Q ss_pred CCccccCCCCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCC
Q 019939 15 RSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGP 94 (333)
Q Consensus 15 ~sLH~~~~~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gp 94 (333)
.|++... +....|++++++..++.+||+|+.+++|.||.+..+..++. ...+++.++.....++.+...|.
T Consensus 12 GSM~~~y-k~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~vt--------~~~~~~~v~~~~~~~~~~~~~G~ 82 (200)
T PF10138_consen 12 GSMRPLY-KDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDVT--------LDNYEGYVDELHAGLPDWGRMGG 82 (200)
T ss_pred CCCchhh-hCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCcC--------HHHHHHHHHHHhccccccCCCCC
Confidence 4555443 45689999999999999999999999999999877655542 34666767655555555566688
Q ss_pred CChHHHHHHHHHHHHhc-C-CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCccc
Q 019939 95 TSFAPIIEMAITIVEHS-G-GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMR 172 (333)
Q Consensus 95 t~fapvI~~~~~~~~~~-~-~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~ 172 (333)
|+|+|||++|++++.+. + ..+.++||||||+++| .+++.++|++||++||+|+|||||+.+|++|+
T Consensus 83 t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~ 150 (200)
T PF10138_consen 83 TNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIREASDEPIFWQFVGIGDSNFGFLE 150 (200)
T ss_pred cchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHHhccCCCeeEEEEEecCCcchHHH
Confidence 99999999999999743 2 3488899999999997 89999999999999999999999999999999
Q ss_pred ccCCCCCCcccceeeeeecccccccccccchhHHHHHHHHHHHhHHHHHHHHHhccc
Q 019939 173 EFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNIL 229 (333)
Q Consensus 173 ~ld~~~~~r~~DnvqFv~~~~~~~~~~~~~~~~~~la~~~L~EiP~q~~~~~~~~~l 229 (333)
+|| +|.+|.+||++||.+.++. .++|++||+++|.|+|.|+++++++|||
T Consensus 151 kLD-~l~gR~vDNa~Ff~~~d~~------~lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 151 KLD-DLAGRVVDNAGFFAIDDID------ELSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred Hhh-ccCCcccCCcCeEecCCcc------cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999 5999999999999999984 3789999999999999999999999986
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.73 E-value=1.4e-17 Score=149.80 Aligned_cols=146 Identities=17% Similarity=0.283 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHH
Q 019939 23 DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE 102 (333)
Q Consensus 23 ~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~ 102 (333)
+.+.+++++.+++.++..||.|+...+|+|+.... .+. . ..+++.+.|.+ +...|+|++.+.|+
T Consensus 26 k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~-------~-~~~~v~~~~~~----~~p~G~T~l~~~l~ 89 (199)
T cd01457 26 RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDN-------V-NSSKVDQLFAE----NSPDGGTNLAAVLQ 89 (199)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCC-------c-CHHHHHHHHhc----CCCCCcCcHHHHHH
Confidence 45899999999999999999999666666655311 111 1 15566666643 44569999999999
Q ss_pred HHHHHH-Hhc-C---C-ceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCC-----CeEEEEEecccC--CCC
Q 019939 103 MAITIV-EHS-G---G-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEY-----PLSIILVGVGDG--PWD 169 (333)
Q Consensus 103 ~~~~~~-~~~-~---~-~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~-----PlSii~VGvGd~--~f~ 169 (333)
.+++.+ +.. . . ++.+++|||||..++ .+++.++|++|++. +|.|.|||||++ .|.
T Consensus 90 ~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~ 157 (199)
T cd01457 90 DALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVERVIIKASDELDADNELAISFLQIGRDPAATA 157 (199)
T ss_pred HHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHHHHHHHHHhhccccCceEEEEEeCCcHHHHH
Confidence 998543 221 1 1 278999999999886 77889999999863 899999999985 799
Q ss_pred cccccCCCC--CCcccceeeeeecccccc
Q 019939 170 MMREFDDNI--PARAFDNFQFVNFTEIMS 196 (333)
Q Consensus 170 ~m~~ld~~~--~~r~~DnvqFv~~~~~~~ 196 (333)
+|++||+.+ .++.||||+||+|.++..
T Consensus 158 ~L~~ld~~~~~~~~~~d~vd~~~~~~~~~ 186 (199)
T cd01457 158 FLKALDDQLQEVGAKFDIVDTVTWDDMER 186 (199)
T ss_pred HHHHHhHHHHhcCCcccceeeeeHHhhhc
Confidence 999999653 457899999999999854
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=1.5e-09 Score=76.69 Aligned_cols=44 Identities=41% Similarity=1.089 Sum_probs=35.8
Q ss_pred CCCeecccccCCccce-eCCCCc-cchhhhhcC----CCCCCcccccccc
Q 019939 286 DNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~-l~CgH~-fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
++..|.||++...+++ +||||. ||..|+.++ ..||+||++|+++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 3578999999999955 599999 999999876 7999999999764
No 7
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.1e-09 Score=76.48 Aligned_cols=47 Identities=45% Similarity=1.034 Sum_probs=40.2
Q ss_pred CCeecccccCCccc-eeCCCCcc-chhhhhcCC-----CCCCcccccccccccC
Q 019939 287 NHVCPICLTDPKDM-AFGCGHQT-CCGCGQDLD-----LCPICRSFIQTRIKLY 333 (333)
Q Consensus 287 ~~~C~ICl~~~~~~-~l~CgH~f-C~~C~~~~~-----~CP~CR~~i~~~i~~y 333 (333)
..+|.||++.+.+. .+-|||.+ |.+|..+++ .||+||++|+.+||.|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 37899999999995 45999995 559997653 7999999999999877
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.6e-08 Score=85.40 Aligned_cols=48 Identities=35% Similarity=0.890 Sum_probs=38.2
Q ss_pred CCCeecccccCCcc-c--eeCCCCccchhhhhcC----CCCCCcccccccc--cccC
Q 019939 286 DNHVCPICLTDPKD-M--AFGCGHQTCCGCGQDL----DLCPICRSFIQTR--IKLY 333 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~--~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~--i~~y 333 (333)
.-..|+|||+-+.. + ...|||.||..|++.. ..||+||..|+.+ .+||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 34889999999887 3 2499999999999754 5899999988764 4444
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.50 E-value=5.7e-08 Score=87.00 Aligned_cols=46 Identities=30% Similarity=0.761 Sum_probs=38.1
Q ss_pred CCCCCCeecccccCCcc-ceeCCCCccchhhhhcC--------------------CCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL--------------------DLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~--------------------~~CP~CR~~i~~ 328 (333)
...++..|+||++..++ ++++|||.||..|+.++ ..||+||.++..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34567899999999999 55699999999999532 379999999864
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.49 E-value=3.2e-08 Score=67.71 Aligned_cols=33 Identities=48% Similarity=1.084 Sum_probs=25.2
Q ss_pred ecccccCCcc-ceeCCCCccchhhhhcC--------CCCCCc
Q 019939 290 CPICLTDPKD-MAFGCGHQTCCGCGQDL--------DLCPIC 322 (333)
Q Consensus 290 C~ICl~~~~~-~~l~CgH~fC~~C~~~~--------~~CP~C 322 (333)
|+||++.+++ ++++|||+||..|+.+. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 88899999999999643 268887
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.5e-07 Score=85.98 Aligned_cols=50 Identities=34% Similarity=0.720 Sum_probs=41.1
Q ss_pred CCCCCeecccccCCcc-ceeCCCCccchhhhhcC-------CCCCCcccccc--cccccC
Q 019939 284 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQ--TRIKLY 333 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-------~~CP~CR~~i~--~~i~~y 333 (333)
......|.||+|..++ |+..|||.||..|+-++ +.||+|+..+. ++|.||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3456899999999999 66699999999999644 47999999885 467766
No 12
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.41 E-value=2.2e-06 Score=73.94 Aligned_cols=131 Identities=19% Similarity=0.296 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMA 104 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~ 104 (333)
...+.+...+..++..+..+..+.+++|+......... ....+.+.+ +...+.+..+...|.|++...|+.+
T Consensus 18 ~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~-------~~~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a 89 (171)
T cd01461 18 TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPS-------SVSATAENV-AAAIEYVNRLQALGGTNMNDALEAA 89 (171)
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCc-------ceeCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 34778888888888889888889999999864321110 001222222 2223344455668999999999999
Q ss_pred HHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccC
Q 019939 105 ITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFD 175 (333)
Q Consensus 105 ~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld 175 (333)
.+..+.....-.++++||||...+ .+++.+++.++.+..+.|..||+|. .+...|+.+-
T Consensus 90 ~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia 149 (171)
T cd01461 90 LELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREALSGRIRLFTFGIGSDVNTYLLERLA 149 (171)
T ss_pred HHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHH
Confidence 888765333456899999999765 5677788888877788899999996 4666677665
No 13
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.3e-08 Score=92.62 Aligned_cols=49 Identities=35% Similarity=1.101 Sum_probs=43.7
Q ss_pred CCCCeecccccCCccce-eCCCCcc-chhhhhcCCCCCCcccccccccccC
Q 019939 285 SDNHVCPICLTDPKDMA-FGCGHQT-CCGCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~-l~CgH~f-C~~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
.....|.||++.+++.+ |+|||.. |..|..++..||+||+.|.+++|+|
T Consensus 298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred hHHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence 34789999999999955 5999995 6699999999999999999999987
No 14
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.39 E-value=1.6e-06 Score=74.26 Aligned_cols=134 Identities=19% Similarity=0.315 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
+....+...+..++..+.. +..+-+++|++.... .+++. ...+.+.+.+......+. ..|.|++...|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~----~~~~~~~~~~~i~~~~~~--~~~~~~~~~al 87 (177)
T smart00327 17 NRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN----DSRSKDALLEALASLSYK--LGGGTNLGAAL 87 (177)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc----ccCCHHHHHHHHHhcCCC--CCCCchHHHHH
Confidence 4556666666666666665 789999999984321 22221 245677777666654443 56889999999
Q ss_pred HHHHHHHHhc--CC---ceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC-CCCcccccC
Q 019939 102 EMAITIVEHS--GG---QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG-PWDMMREFD 175 (333)
Q Consensus 102 ~~~~~~~~~~--~~---~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~-~f~~m~~ld 175 (333)
+.+.+..++. .. ...+++|||||...+ .+.+.+++..+.+..+.|++||+|+. +.+.|+.|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~------------~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~ 155 (177)
T smart00327 88 QYALENLFSKSAGSRRGAPKVLILITDGESND------------GGDLLKAAKELKRSGVKVFVVGVGNDVDEEELKKLA 155 (177)
T ss_pred HHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCC------------CccHHHHHHHHHHCCCEEEEEEccCccCHHHHHHHh
Confidence 9999987521 11 256899999999885 14667777777777899999999998 889999888
Q ss_pred CCCC
Q 019939 176 DNIP 179 (333)
Q Consensus 176 ~~~~ 179 (333)
....
T Consensus 156 ~~~~ 159 (177)
T smart00327 156 SAPG 159 (177)
T ss_pred CCCc
Confidence 5544
No 15
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-07 Score=91.15 Aligned_cols=51 Identities=39% Similarity=0.972 Sum_probs=44.7
Q ss_pred CCCCCCeecccccCCcccee-CCCCccch-hhhhcCCCCCCcccccccccccC
Q 019939 283 STSDNHVCPICLTDPKDMAF-GCGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~~~l-~CgH~fC~-~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
.+.....|.||++.+.+.++ ||||.+|| .|.+.+..||+||+.|...+++|
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence 33455789999999999554 99999998 99999999999999999998877
No 16
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.4e-07 Score=87.02 Aligned_cols=44 Identities=32% Similarity=0.789 Sum_probs=37.8
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
+....|.+|++...+ ...||||.||..|+..+ ..||+||+.++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 456899999999999 66799999999999644 479999998864
No 17
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.6e-07 Score=89.15 Aligned_cols=49 Identities=37% Similarity=0.996 Sum_probs=40.8
Q ss_pred CCCCeecccccCCcc-ceeCCCCcc-chhhhhcC----CCCCCcccccccccccC
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQT-CCGCGQDL----DLCPICRSFIQTRIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~f-C~~C~~~~----~~CP~CR~~i~~~i~~y 333 (333)
++..+|.||++..+| +++||.|.+ |..|++.+ .+||+||++|...+.+|
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 456899999999999 566999996 55999865 47999999998876654
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.26 E-value=3e-07 Score=85.34 Aligned_cols=47 Identities=32% Similarity=0.731 Sum_probs=37.0
Q ss_pred CCCCeecccccCCcc--------cee-CCCCccchhhhhcC----CCCCCcccccccccc
Q 019939 285 SDNHVCPICLTDPKD--------MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRIK 331 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~--------~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~~i~ 331 (333)
..+.+|+||++...+ .++ +|+|.||..|+... ..||+||.++..+++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 346799999997543 133 89999999999643 589999999987654
No 19
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.22 E-value=9e-06 Score=71.85 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 27 YEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 27 Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
+.++...+..+++.+. ++-.+-++.|+.... .++++.... ....+.+.+.-.........+|.|+++..++.
T Consensus 19 ~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~ 93 (186)
T cd01471 19 VTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSPN--STNKDLALNAIRALLSLYYPNGSTNTTSALLV 93 (186)
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCcc--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHH
Confidence 6777777888887774 345799999997543 223332211 11222322222222233446799999999999
Q ss_pred HHHHHHhc----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccCCCC
Q 019939 104 AITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFDDNI 178 (333)
Q Consensus 104 ~~~~~~~~----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld~~~ 178 (333)
+.+...+. .....+++|||||..++ ..++.++..++.+.++-|.+||||. .+.+.|+.|-+.-
T Consensus 94 a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~ 161 (186)
T cd01471 94 VEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRTLKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCD 161 (186)
T ss_pred HHHHhhccCCCcccCceEEEEEccCCCCC------------CcchhHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCC
Confidence 99887541 12245789999999765 2334445555556789999999996 5777788776432
Q ss_pred -CCcccceeeeeecccc
Q 019939 179 -PARAFDNFQFVNFTEI 194 (333)
Q Consensus 179 -~~r~~DnvqFv~~~~~ 194 (333)
..-..++.-+-+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (186)
T cd01471 162 PDDSPCPLYLQSSWSEV 178 (186)
T ss_pred CCCCCCCeeecCCHHHH
Confidence 1222456655566555
No 20
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.15 E-value=2e-05 Score=70.23 Aligned_cols=132 Identities=14% Similarity=0.232 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCC---CCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDE---KFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~---~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
+..+.|-..+..++..+..+..+-++.|+...... +++.... ......+. ..+.+..++..|.|++...|
T Consensus 29 ~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~l~~l~~~G~T~~~~al 101 (190)
T cd01463 29 QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPV---VPCFNDTLVQATTSNKKV----LKEALDMLEAKGIANYTKAL 101 (190)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEE---eeecccceEecCHHHHHH----HHHHHhhCCCCCcchHHHHH
Confidence 56777777888888888888899999999874422 2211110 00112222 33344567778999999999
Q ss_pred HHHHHHHHh---c------CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHh--cCCCeEEEEEecccC--CC
Q 019939 102 EMAITIVEH---S------GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA--SEYPLSIILVGVGDG--PW 168 (333)
Q Consensus 102 ~~~~~~~~~---~------~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~A--S~~PlSii~VGvGd~--~f 168 (333)
+.+.+..++ . ...-.++++||||..++ ..+..+++... ...++.|..||||.+ +.
T Consensus 102 ~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~ 169 (190)
T cd01463 102 EFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN------------YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDR 169 (190)
T ss_pred HHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc------------HhHHHHHhcccccCCCcEEEEEEecCCccccc
Confidence 999887654 1 11235789999998775 34555554432 235899999999974 67
Q ss_pred CcccccC
Q 019939 169 DMMREFD 175 (333)
Q Consensus 169 ~~m~~ld 175 (333)
..|++|-
T Consensus 170 ~~L~~lA 176 (190)
T cd01463 170 REIQWMA 176 (190)
T ss_pred hHHHHHH
Confidence 7887775
No 21
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.13 E-value=1.1e-05 Score=70.93 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 27 YEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 27 Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
-.+|+..+...+...+ ++..+-++.|+.... .++++.. +. ......+...|.|++...+++
T Consensus 24 ~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~-------~~------~~~~~~l~~~GgT~l~~aL~~ 87 (176)
T cd01464 24 LNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTP-------LE------SFQPPRLTASGGTSMGAALEL 87 (176)
T ss_pred HHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCcc-------HH------hcCCCcccCCCCCcHHHHHHH
Confidence 3445555555444322 245799999998543 2233321 11 012345667899999999999
Q ss_pred HHHHHHhcC---------CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccc
Q 019939 104 AITIVEHSG---------GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMRE 173 (333)
Q Consensus 104 ~~~~~~~~~---------~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ 173 (333)
+.+..+... ..-.++++||||..+| +.....+++.++....+.|..||||. .+.+.|++
T Consensus 88 a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-----------~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ 156 (176)
T cd01464 88 ALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD-----------DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQ 156 (176)
T ss_pred HHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc-----------hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHH
Confidence 998864321 1124789999999876 23445577888777789999999994 67777887
Q ss_pred cCC
Q 019939 174 FDD 176 (333)
Q Consensus 174 ld~ 176 (333)
+-+
T Consensus 157 ia~ 159 (176)
T cd01464 157 ITE 159 (176)
T ss_pred HHC
Confidence 764
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=1e-06 Score=87.37 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=40.9
Q ss_pred CCCCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 280 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 280 ~~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
....++....|+||++.+.+ ++++|||.||..|+... ..||.||..+..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34567788999999999999 66699999999999743 479999998754
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.11 E-value=8e-07 Score=80.89 Aligned_cols=46 Identities=33% Similarity=0.665 Sum_probs=35.1
Q ss_pred CCCCeecccccCC------cc---cee-CCCCccchhhhhcC----------CCCCCccccccccc
Q 019939 285 SDNHVCPICLTDP------KD---MAF-GCGHQTCCGCGQDL----------DLCPICRSFIQTRI 330 (333)
Q Consensus 285 ~~~~~C~ICl~~~------~~---~~l-~CgH~fC~~C~~~~----------~~CP~CR~~i~~~i 330 (333)
.++.+|.||++.. .+ .++ +|+|.||..|+.++ ..||+||..+..++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 4568999999874 11 234 99999999999744 24999999887654
No 24
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.08 E-value=7.1e-07 Score=61.22 Aligned_cols=35 Identities=40% Similarity=1.040 Sum_probs=28.2
Q ss_pred eecccccCCcc----ceeCCCCccchhhhhcC----CCCCCcc
Q 019939 289 VCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICR 323 (333)
Q Consensus 289 ~C~ICl~~~~~----~~l~CgH~fC~~C~~~~----~~CP~CR 323 (333)
.|+||++.+.. +.++|||.||.+|+.++ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999998843 34599999999999744 5899997
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=87.30 Aligned_cols=42 Identities=43% Similarity=0.865 Sum_probs=35.3
Q ss_pred CCeecccccCCcc-ceeCCCCccchhhhh---------cCCCCCCccccccc
Q 019939 287 NHVCPICLTDPKD-MAFGCGHQTCCGCGQ---------DLDLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~l~CgH~fC~~C~~---------~~~~CP~CR~~i~~ 328 (333)
+..||||++.+.- +...|||.||+.|+- ....||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999887 444899999999994 23589999998875
No 26
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.06 E-value=1.2e-06 Score=58.65 Aligned_cols=33 Identities=42% Similarity=1.114 Sum_probs=26.0
Q ss_pred ecccccCCccc-e-eCCCCccchhhhhcC----CCCCCc
Q 019939 290 CPICLTDPKDM-A-FGCGHQTCCGCGQDL----DLCPIC 322 (333)
Q Consensus 290 C~ICl~~~~~~-~-l~CgH~fC~~C~~~~----~~CP~C 322 (333)
|+||++...+. + ++|||.||.+|+.+. ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999994 4 499999999999643 589887
No 27
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.03 E-value=6.5e-05 Score=62.31 Aligned_cols=133 Identities=17% Similarity=0.328 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPI 100 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapv 100 (333)
...++.+...+..++..+.. ...+-+++|+..... .+.++. ....+.+.+.-.. +.. ..+|.|++...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~---~~~~~~----~~~~~~~~~~~~~-~~~-~~~~~t~~~~a 85 (161)
T cd00198 15 GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARV---VLPLTT----DTDKADLLEAIDA-LKK-GLGGGTNIGAA 85 (161)
T ss_pred cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccce---eecccc----cCCHHHHHHHHHh-ccc-CCCCCccHHHH
Confidence 45667777777777777776 778999999974321 112111 1123333332221 221 36799999999
Q ss_pred HHHHHHHHHhc--CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccCC
Q 019939 101 IEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFDD 176 (333)
Q Consensus 101 I~~~~~~~~~~--~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld~ 176 (333)
++.+.+...+. .....++++||||...+. .....+.+..+....+.|.+||+|+ .+-..++.|++
T Consensus 86 l~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 86 LRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEAARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred HHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHHHHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 99999998653 345788999999987751 1244555666667799999999998 66666776663
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.02 E-value=2.1e-06 Score=59.03 Aligned_cols=36 Identities=39% Similarity=0.923 Sum_probs=30.0
Q ss_pred eecccccCCcc----ceeCCCCccchhhhhcCC----CCCCccc
Q 019939 289 VCPICLTDPKD----MAFGCGHQTCCGCGQDLD----LCPICRS 324 (333)
Q Consensus 289 ~C~ICl~~~~~----~~l~CgH~fC~~C~~~~~----~CP~CR~ 324 (333)
.|++|++.+.. .+++|||.||..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999922 344999999999998776 8999985
No 29
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.97 E-value=3.3e-05 Score=65.28 Aligned_cols=129 Identities=19% Similarity=0.303 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHH
Q 019939 26 PYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE 102 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~ 102 (333)
.++.+...+..++..+. .+-.+.++.|++.... ++.+.... ..+.+.+......... +|.|++...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~---~~~~~~~~----~~~~~~~~i~~~~~~~--~~~t~~~~al~ 87 (161)
T cd01450 17 NFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV---EFSLNDYK----SKDDLLKAVKNLKYLG--GGGTNTGKALQ 87 (161)
T ss_pred HHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE---EEECCCCC----CHHHHHHHHHhcccCC--CCCccHHHHHH
Confidence 55666666666666554 4778999999986432 22222111 3445554443322111 14899999999
Q ss_pred HHHHHHHhcC----CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 103 MAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 103 ~~~~~~~~~~----~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
.+.+...... ....++++||||..++. .+..+++.+..+..+-|+.||+|..+.+.|++|-
T Consensus 88 ~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la 152 (161)
T cd01450 88 YALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPKEAAAKLKDEGIKVFVVGVGPADEEELREIA 152 (161)
T ss_pred HHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchHHHHHHHHHCCCEEEEEeccccCHHHHHHHh
Confidence 9999876542 45678999999988751 1344445555556899999999998888888776
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.93 E-value=5e-06 Score=60.85 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=35.7
Q ss_pred CCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 287 NHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
+..|+||.+...+ ++++|||.||..|+.+. ..||+|+.++..
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 3579999999999 66799999999999744 479999998853
No 31
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.92 E-value=5.2e-05 Score=65.43 Aligned_cols=125 Identities=14% Similarity=0.228 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHH
Q 019939 26 PYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAI 105 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~ 105 (333)
..+.|-.++..++..+.++..+-+++|+...... +++.+.+. .+.+ ...+.+..+...|-|+....++.+.
T Consensus 17 rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~---~~~~~~~~--~~~~----~~~~~i~~~~~~g~T~~~~al~~a~ 87 (155)
T cd01466 17 KLQLVKHALRFVISSLGDADRLSIVTFSTSAKRL---SPLRRMTA--KGKR----SAKRVVDGLQAGGGTNVVGGLKKAL 87 (155)
T ss_pred HHHHHHHHHHHHHHhCCCcceEEEEEecCCcccc---CCCcccCH--HHHH----HHHHHHHhccCCCCccHHHHHHHHH
Confidence 4566666677777777666679999999864322 22222111 1122 2233334466789999999999999
Q ss_pred HHHHhcC--CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecc-cCCCCcccccC
Q 019939 106 TIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVG-DGPWDMMREFD 175 (333)
Q Consensus 106 ~~~~~~~--~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvG-d~~f~~m~~ld 175 (333)
+..++.. ..-.++++||||..++ . .++..+.+.++.|..||+| +.+.+.|++|-
T Consensus 88 ~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~~~~~~v~v~~igig~~~~~~~l~~iA 144 (155)
T cd01466 88 KVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLRADNAPIPIHTFGLGASHDPALLAFIA 144 (155)
T ss_pred HHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhcccCCCceEEEEecCCCCCHHHHHHHH
Confidence 9876432 2346899999998764 1 2234456679999999999 45667777665
No 32
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.91 E-value=0.00016 Score=63.25 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHhhhhccCC-CCccceEEeCCCCCCC--CcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHD--QEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~-d~~ip~~GFG~~~~~~--~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
+..+.|-..+..++..... +-.+-+|+|+...+.. ..++...+-+. . +..+.++.+..+...|.|++...|
T Consensus 17 ~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~g~T~~~~al 90 (174)
T cd01454 17 RRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDE---S---LHERARKRLAALSPGGNTRDGAAI 90 (174)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCccc---c---cchhHHHHHHccCCCCCCcHHHHH
Confidence 4566666665555555553 5579999998763111 11111100011 0 011223334456667889999999
Q ss_pred HHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC
Q 019939 102 EMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 167 (333)
Q Consensus 102 ~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~ 167 (333)
+.+.+...+....--++++||||..++. +...+.+. ..+++++++.++.+..+.+..||||+..
T Consensus 91 ~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 91 RHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHHHHHhCCcEEEEEEecCcc
Confidence 9999888654444568999999998752 11222221 2455666688888889999999999865
No 33
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.90 E-value=0.0001 Score=62.67 Aligned_cols=135 Identities=19% Similarity=0.318 Sum_probs=88.4
Q ss_pred CccccCCCCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCC
Q 019939 16 SLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPT 95 (333)
Q Consensus 16 sLH~~~~~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt 95 (333)
|+...+...+...++...+..++..+..+ .|-+++|+.... ..+++ ..+.+.+.++..+..+.....|.|
T Consensus 11 SM~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t~~~~~~~~~l~~~~~~~~~~~~t 80 (172)
T PF13519_consen 11 SMNGYDGNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------TSDKDELKNALNKLSPQGMPGGGT 80 (172)
T ss_dssp GGGTTTSSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------ESSHHHHHHHHHTHHHHG--SSS-
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------cccHHHHHHHhhcccccccCccCC
Confidence 44433324678899999999999998755 999999998531 12222 246666666666665556668999
Q ss_pred ChHHHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCC--Ccccc
Q 019939 96 SFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPW--DMMRE 173 (333)
Q Consensus 96 ~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f--~~m~~ 173 (333)
++...|+.+.+........--++++||||.... ...+++..+.+..+.|.+||+|...- +.|++
T Consensus 81 ~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~ 146 (172)
T PF13519_consen 81 NLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALKQQGITIYTVGIGSDSDANEFLQR 146 (172)
T ss_dssp -HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHHCTTEEEEEEEES-TT-EHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHHHcCCeEEEEEECCCccHHHHHHH
Confidence 999999999999876543345678999997553 22346666778889999999997553 23444
Q ss_pred c
Q 019939 174 F 174 (333)
Q Consensus 174 l 174 (333)
+
T Consensus 147 l 147 (172)
T PF13519_consen 147 L 147 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.90 E-value=0.00025 Score=63.71 Aligned_cols=137 Identities=16% Similarity=0.284 Sum_probs=90.6
Q ss_pred CHHH-HHHHHHHhhhhccCCC---CccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHH
Q 019939 25 NPYE-QAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPI 100 (333)
Q Consensus 25 N~Y~-~ai~~i~~vl~~yD~d---~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapv 100 (333)
..++ .++..+-.++..|+-. -.+-+.-|++... ..++|+.+. -..-+.++++-++..+.+..+|.|+....
T Consensus 16 ~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~A 90 (192)
T cd01473 16 SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDEE--RYDKNELLKKINDLKNSYRSGGETYIVEA 90 (192)
T ss_pred HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCccc--ccCHHHHHHHHHHHHhccCCCCcCcHHHH
Confidence 3355 3667777788887754 4788889987542 223443221 22345565555544333445789999999
Q ss_pred HHHHHHHHHhc-C---CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccCC
Q 019939 101 IEMAITIVEHS-G---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 176 (333)
Q Consensus 101 I~~~~~~~~~~-~---~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld~ 176 (333)
|+.+.+..... + ...-|+++||||.-++. +.....++...+.+.-+-+..||||..+-..|+.+-+
T Consensus 91 L~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 91 LKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAG 160 (192)
T ss_pred HHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcC
Confidence 99998876432 1 13679999999998751 1334556666777889999999999987666666553
No 35
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.80 E-value=0.00023 Score=61.77 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
..++++...+-.++..|+ ++..|-++.|+.... ..|.++ .....+.++++..+. + ..+|.|+....|
T Consensus 16 ~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~----~~~~~~~l~~~l~~~-~--~~~g~T~~~~aL 85 (164)
T cd01482 16 SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLN----AYTSKEDVLAAIKNL-P--YKGGNTRTGKAL 85 (164)
T ss_pred hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecC----CCCCHHHHHHHHHhC-c--CCCCCChHHHHH
Confidence 356777776767776664 556899999998643 223332 123455555554432 1 146899999999
Q ss_pred HHHHHHHHhc-----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccCC
Q 019939 102 EMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 176 (333)
Q Consensus 102 ~~~~~~~~~~-----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld~ 176 (333)
+.+.+...+. .....++++||||..++ +.++..+.++ +..+.|..||+|+.+-..|+++-+
T Consensus 86 ~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 86 THVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELPARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHHHHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 9888754221 22456889999998764 2344444444 468899999999977666666653
No 36
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.77 E-value=1.5e-05 Score=53.23 Aligned_cols=38 Identities=39% Similarity=1.052 Sum_probs=30.4
Q ss_pred eecccccCCcc-cee-CCCCccchhhhhc-----CCCCCCccccc
Q 019939 289 VCPICLTDPKD-MAF-GCGHQTCCGCGQD-----LDLCPICRSFI 326 (333)
Q Consensus 289 ~C~ICl~~~~~-~~l-~CgH~fC~~C~~~-----~~~CP~CR~~i 326 (333)
.|+||++...+ +.+ +|||.||..|+.. ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999855 445 6999999999963 35799999753
No 37
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.77 E-value=7e-06 Score=55.17 Aligned_cols=33 Identities=42% Similarity=1.100 Sum_probs=27.7
Q ss_pred ecccccCCcc-c-eeCCCCccchhhhhcC------CCCCCc
Q 019939 290 CPICLTDPKD-M-AFGCGHQTCCGCGQDL------DLCPIC 322 (333)
Q Consensus 290 C~ICl~~~~~-~-~l~CgH~fC~~C~~~~------~~CP~C 322 (333)
|+||++.+.+ . +++|||.||..|+.++ ..||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999998 4 4599999999999643 479887
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1e-05 Score=75.25 Aligned_cols=43 Identities=30% Similarity=0.776 Sum_probs=36.2
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhc------CCCCCCcccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD------LDLCPICRSFIQ 327 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~------~~~CP~CR~~i~ 327 (333)
..+..|.||++.... +..+|||.||+.|+-. ...||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 457899999999988 6679999999999965 236999999764
No 39
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=7.5e-06 Score=85.73 Aligned_cols=49 Identities=29% Similarity=0.586 Sum_probs=40.4
Q ss_pred CCCCeecccccCCcccee-CCCCccchhhhh-----cCCCCCCccccccc--ccccC
Q 019939 285 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQ-----DLDLCPICRSFIQT--RIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~l-~CgH~fC~~C~~-----~~~~CP~CR~~i~~--~i~~y 333 (333)
.+-..|++|-+.++++++ .|||.||..|++ +.+.||.|-.+|.. +.+||
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 455899999999999665 999999999997 45799999999853 45544
No 40
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.74 E-value=0.00015 Score=65.43 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCC--Cc-ccccCCCCCCCCCHH-HHHHHHHHhCCcee-ecCCCCh
Q 019939 23 DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD--QE-VFSFYPDEKFCNGFE-EVLRRYRELVPHLR-LAGPTSF 97 (333)
Q Consensus 23 ~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~--~~-vf~~~~~~~~~~G~~-gvl~~Y~~~~~~v~-l~gpt~f 97 (333)
..+..+.|...+..++..+.++..+-+|.|+...... .. +++..+--....+.. .-.+...+.+..+. ..|.|+.
T Consensus 40 ~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l 119 (206)
T cd01456 40 GETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPL 119 (206)
T ss_pred cchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCCcccHHHHHHHHHhhcCCCCcChH
Confidence 3567777888888888888778899999999854311 11 111001000111210 01222333445555 6799999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHh--cCCCeEEEEEecccC-CCCccccc
Q 019939 98 APIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA--SEYPLSIILVGVGDG-PWDMMREF 174 (333)
Q Consensus 98 apvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~A--S~~PlSii~VGvGd~-~f~~m~~l 174 (333)
...|+.+.+..+ .+.-..+++||||..++.. +..+..+.+.+. ...++.|-.||||.. +.+.|+++
T Consensus 120 ~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~---------~~~~~~~~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 120 AAALAEAAAYVD--PGRVNVVVLITDGEDTCGP---------DPCEVARELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHHHHHHHhC--CCCcceEEEEcCCCccCCC---------CHHHHHHHHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 999999988875 2233678999999876411 122333444432 124788999999974 34445544
Q ss_pred C
Q 019939 175 D 175 (333)
Q Consensus 175 d 175 (333)
-
T Consensus 189 A 189 (206)
T cd01456 189 A 189 (206)
T ss_pred H
Confidence 3
No 41
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.72 E-value=0.00041 Score=59.71 Aligned_cols=131 Identities=15% Similarity=0.230 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHH
Q 019939 26 PYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAI 105 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~ 105 (333)
..+.|...+..++..+..+..+-++.|+..... ++.+.+. ...+.+.+ .+.+++..|.|++...++.+.
T Consensus 17 ~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~---~~~~~~~----~~~~~l~~----~l~~~~~~g~T~~~~al~~a~ 85 (170)
T cd01465 17 KLPLVKSALKLLVDQLRPDDRLAIVTYDGAAET---VLPATPV----RDKAAILA----AIDRLTAGGSTAGGAGIQLGY 85 (170)
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEEecCCccE---EecCccc----chHHHHHH----HHHcCCCCCCCCHHHHHHHHH
Confidence 377888888888899888889999999986332 2222111 12233332 233455689999999999998
Q ss_pred HHHHhcC--CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC-CCCcccccC
Q 019939 106 TIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG-PWDMMREFD 175 (333)
Q Consensus 106 ~~~~~~~--~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~-~f~~m~~ld 175 (333)
+..++.. ...-.++++|||..++.. .+.++..+++.++.+..+-|..||+|.. +...|+++-
T Consensus 86 ~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 86 QEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred HHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHH
Confidence 8876432 223567899999875411 1245566667666677889999999942 445566554
No 42
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.65 E-value=8.2e-06 Score=78.24 Aligned_cols=47 Identities=26% Similarity=0.534 Sum_probs=39.2
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
-.+..-..|-||.+.++. ++.||+|.||.-|+++. ..||.|+.+++.
T Consensus 18 k~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 344566899999999999 55599999999999854 589999998864
No 43
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.62 E-value=0.0006 Score=58.88 Aligned_cols=126 Identities=15% Similarity=0.287 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cCCCChHHH
Q 019939 25 NPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AGPTSFAPI 100 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~gpt~fapv 100 (333)
..++.+...+..++..|+ .+-.+-++.|+..... +++++. ....+.+.+.-. .+.. +|.|+....
T Consensus 16 ~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~---~~~~~~----~~~~~~~~~~l~----~l~~~~g~T~~~~a 84 (164)
T cd01472 16 SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRT---EFYLNT----YRSKDDVLEAVK----NLRYIGGGTNTGKA 84 (164)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeE---EEecCC----CCCHHHHHHHHH----hCcCCCCCchHHHH
Confidence 345666666777777765 3347999999975432 233321 223444444332 3333 788999999
Q ss_pred HHHHHHHHHhc-----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 101 IEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 101 I~~~~~~~~~~-----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
++.+.+..... ...-.++++||||..++ +..+..+.+. +..+.+..||+|+.+.+.|+.+-
T Consensus 85 l~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~~~~~~l~---~~gv~i~~ig~g~~~~~~L~~ia 150 (164)
T cd01472 85 LKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVEEPAVELK---QAGIEVFAVGVKNADEEELKQIA 150 (164)
T ss_pred HHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHHHHHHHHH---HCCCEEEEEECCcCCHHHHHHHH
Confidence 99999876531 23356789999997654 1222333333 46788999999998877777765
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.58 E-value=3.1e-05 Score=57.44 Aligned_cols=43 Identities=30% Similarity=0.763 Sum_probs=24.8
Q ss_pred CCCCeecccccCCcc-cee-CCCCccchhhhhcC--CCCCCcccccc
Q 019939 285 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL--DLCPICRSFIQ 327 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~--~~CP~CR~~i~ 327 (333)
++-..|++|.+..+. +.+ .|.|.||..|+.+. ..||+|+.+-.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence 345789999999999 555 99999999999865 57999998864
No 45
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.58 E-value=4.5e-05 Score=49.10 Aligned_cols=33 Identities=48% Similarity=1.231 Sum_probs=27.1
Q ss_pred ecccccCCcc-ceeCCCCccchhhhhc-----CCCCCCc
Q 019939 290 CPICLTDPKD-MAFGCGHQTCCGCGQD-----LDLCPIC 322 (333)
Q Consensus 290 C~ICl~~~~~-~~l~CgH~fC~~C~~~-----~~~CP~C 322 (333)
|+||++...+ +.++|||.||..|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899999777 5569999999999973 3469887
No 46
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.53 E-value=2.2e-05 Score=73.96 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=38.8
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
-.+.....|.||-+.++. +..+|||.||.-|+++. ..||+||.+...
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 344556899999999998 55699999999999865 589999987653
No 47
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.52 E-value=0.00051 Score=72.00 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMA 104 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~ 104 (333)
+..++|-..+..++..+.++..|-++.|+......... ....+ ++-+++..+.+..++..|.|++...|+.+
T Consensus 287 ~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~~~-------~~~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a 358 (596)
T TIGR03788 287 ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFPV-------PVPAT-AHNLARARQFVAGLQADGGTEMAGALSAA 358 (596)
T ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEeccc-------cccCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHH
Confidence 56788888888888999888899999999865422110 00011 11223333344566678999999999999
Q ss_pred HHHHHhc-CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC-CCCcccccC
Q 019939 105 ITIVEHS-GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG-PWDMMREFD 175 (333)
Q Consensus 105 ~~~~~~~-~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~-~f~~m~~ld 175 (333)
.+..... ....-.+++||||.+.+ ..+.++.+..+. -...|-.||||+. +...|+.+-
T Consensus 359 ~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 359 LRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRTKL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred HHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHHhc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 8764222 22334578999999875 567777776553 2456668899975 666676664
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.49 E-value=2.7e-05 Score=53.49 Aligned_cols=26 Identities=46% Similarity=0.986 Sum_probs=16.2
Q ss_pred ecccccCCcc-----ceeCCCCccchhhhhcC
Q 019939 290 CPICLTDPKD-----MAFGCGHQTCCGCGQDL 316 (333)
Q Consensus 290 C~ICl~~~~~-----~~l~CgH~fC~~C~~~~ 316 (333)
|+||.+ +.+ ++++|||.||.+|++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 644 56799999999999754
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.2e-06 Score=79.47 Aligned_cols=49 Identities=31% Similarity=0.663 Sum_probs=40.2
Q ss_pred CCCCCCCCeecccccCCcc-cee-CCCCccchhhhhcC-----CCCCCcccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 329 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~-----~~CP~CR~~i~~~ 329 (333)
......+..|+||+++.+. ++. .|+|.||.+|+.+. ..||.||+...++
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3455678999999999998 455 89999999999743 5899999988664
No 50
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.43 E-value=0.0021 Score=55.16 Aligned_cols=119 Identities=21% Similarity=0.349 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCcee-ecCCCChHHHH
Q 019939 26 PYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPII 101 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~-l~gpt~fapvI 101 (333)
.|+++...+..++..+.. .-.+-+.+|+..... .-.|++.. ....+.++++-.. +. .+|.|+....|
T Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~-~~~~~l~~----~~~~~~l~~~i~~----l~~~gg~T~l~~aL 86 (163)
T cd01476 16 KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQ-RVRFNLPK----HNDGEELLEKVDN----LRFIGGTTATGAAI 86 (163)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCce-EEEecCCC----CCCHHHHHHHHHh----CccCCCCccHHHHH
Confidence 367777778888888865 567999999885221 11233321 1233444443332 33 36889999999
Q ss_pred HHHHHHHHhc----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 102 EMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 102 ~~~~~~~~~~----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
+.+.+...+. .....+++++|||..++ +..+..+.+.+ ..-+.+.-||+|+.
T Consensus 87 ~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~~~~~l~~--~~~v~v~~vg~g~~ 142 (163)
T cd01476 87 EVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEKQARILRA--VPNIETFAVGTGDP 142 (163)
T ss_pred HHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHHHHHHHhh--cCCCEEEEEECCCc
Confidence 9999887421 12247899999998764 13444566665 46688999999986
No 51
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.41 E-value=0.0013 Score=58.69 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCcee-ecCCCChHHH
Q 019939 25 NPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPI 100 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~-l~gpt~fapv 100 (333)
+.++++...+..++..++ .+-.+-++.|+..... ++++... .-...+.++++-...-.... ..|.|+....
T Consensus 16 ~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~---~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~A 90 (198)
T cd01470 16 EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKE---IVSIRDF--NSNDADDVIKRLEDFNYDDHGDKTGTNTAAA 90 (198)
T ss_pred HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceE---EEecccC--CCCCHHHHHHHHHhCCcccccCccchhHHHH
Confidence 356666666666665554 3557999999886432 2333211 11233444443333222221 2477999999
Q ss_pred HHHHHHHHHhc----C----CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHh----------cCCCeEEEEEe
Q 019939 101 IEMAITIVEHS----G----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA----------SEYPLSIILVG 162 (333)
Q Consensus 101 I~~~~~~~~~~----~----~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~A----------S~~PlSii~VG 162 (333)
|+.+.+..... . ..-.++++||||+.++-. + ..++.+.|.++ ....+.|..||
T Consensus 91 l~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iG 161 (198)
T cd01470 91 LKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGG-------S--PLPTVDKIKNLVYKNNKSDNPREDYLDVYVFG 161 (198)
T ss_pred HHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCC-------C--hhHHHHHHHHHHhcccccccchhcceeEEEEe
Confidence 99887654211 0 124689999999876410 1 23444444443 33468999999
Q ss_pred ccc-CCCCcccccC
Q 019939 163 VGD-GPWDMMREFD 175 (333)
Q Consensus 163 vGd-~~f~~m~~ld 175 (333)
||+ .+.+.|+++-
T Consensus 162 vG~~~~~~~L~~iA 175 (198)
T cd01470 162 VGDDVNKEELNDLA 175 (198)
T ss_pred cCcccCHHHHHHHh
Confidence 996 4777887775
No 52
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.37 E-value=0.0018 Score=57.72 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=84.0
Q ss_pred CCccccCCCCCHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee
Q 019939 15 RSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL 91 (333)
Q Consensus 15 ~sLH~~~~~~N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l 91 (333)
+|+...+-.+|-.++|-..+...+..+. ....+-++.|++...+. +.+++. ..+.++...+.. +..
T Consensus 14 ~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~------D~~~~~~~L~~~---~~~ 82 (183)
T cd01453 14 RSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTG------NPRKHIQALKTA---REC 82 (183)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCC------CHHHHHHHhhcc---cCC
Confidence 4555555568999999999999998873 34578899996543321 122221 222333333222 244
Q ss_pred cCCCChHHHHHHHHHHHHhcCC--ceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCC
Q 019939 92 AGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWD 169 (333)
Q Consensus 92 ~gpt~fapvI~~~~~~~~~~~~--~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~ 169 (333)
.|.|++...|+.+.+..+.... .=.+|||+|||...+ ..+..+++..+.+..+-|-+||||.+ ..
T Consensus 83 ~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~~~~~l~~~~I~v~~IgiG~~-~~ 149 (183)
T cd01453 83 SGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYETIDKLKKENIRVSVIGLSAE-MH 149 (183)
T ss_pred CCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHHHHHHHHHcCcEEEEEEechH-HH
Confidence 6789999999999988765322 224788899987654 12222344445556788888999853 23
Q ss_pred ccccc
Q 019939 170 MMREF 174 (333)
Q Consensus 170 ~m~~l 174 (333)
.|+++
T Consensus 150 ~L~~i 154 (183)
T cd01453 150 ICKEI 154 (183)
T ss_pred HHHHH
Confidence 34444
No 53
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.36 E-value=0.00077 Score=57.58 Aligned_cols=127 Identities=18% Similarity=0.302 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cCCCChHHHHHHHHH
Q 019939 28 EQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAIT 106 (333)
Q Consensus 28 ~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~gpt~fapvI~~~~~ 106 (333)
+.+...+-.+++...+...|-++.||.......... ....-.+.+.+++ .+..+.. .|.|+....++.+.+
T Consensus 18 ~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~----~~~~~~~~~~a~~----~I~~~~~~~G~t~l~~aL~~a~~ 89 (155)
T PF13768_consen 18 ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGL----VPATEENRQEALQ----WIKSLEANSGGTDLLAALRAALA 89 (155)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhH----HHHhHHHHHHHHH----HHHHhcccCCCccHHHHHHHHHH
Confidence 455555556666677777999999998543211100 0001123333333 2333555 799999999998887
Q ss_pred HHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccC
Q 019939 107 IVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFD 175 (333)
Q Consensus 107 ~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld 175 (333)
.-. ..+....+++||||..++ ..+++.+.+.++. -.+.|..+|+|. .+...|++|-
T Consensus 90 ~~~-~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~~-~~~~i~~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 90 LLQ-RPGCVRAIILLTDGQPVS-----------GEEEILDLVRRAR-GHIRIFTFGIGSDADADFLRELA 146 (155)
T ss_pred hcc-cCCCccEEEEEEeccCCC-----------CHHHHHHHHHhcC-CCceEEEEEECChhHHHHHHHHH
Confidence 642 223456789999999743 1567777777654 558888899997 5666666654
No 54
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.29 E-value=0.0047 Score=52.50 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHHHH
Q 019939 28 EQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITI 107 (333)
Q Consensus 28 ~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~~~ 107 (333)
..++..++..+.. .+..+-++.|+... ....+. .-..+..+++. +..+...|.|++++.++.+.+.
T Consensus 22 ~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~ 87 (152)
T cd01462 22 KAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KTDDLEEPVEF----LSGVQLGGGTDINKALRYALEL 87 (152)
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----CcccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHH
Confidence 3444445554444 23468999998861 111111 12344444443 3345568999999999999988
Q ss_pred HHhcCCceEEEEEEecCc-cccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 108 VEHSGGQYHVLVIIADGQ-VTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 108 ~~~~~~~y~vLlIiTDG~-i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
.++....-.+++|||||. ..+ ..+..++...+....+-|-.||||++
T Consensus 88 l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 88 IERRDPRKADIVLITDGYEGGV------------SDELLREVELKRSRVARFVALALGDH 135 (152)
T ss_pred HHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHHHhcCcEEEEEEecCC
Confidence 765433346899999994 322 22332223333344566777777763
No 55
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00015 Score=70.65 Aligned_cols=41 Identities=32% Similarity=0.791 Sum_probs=34.2
Q ss_pred CeecccccCCcc----ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 288 HVCPICLTDPKD----MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 288 ~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
..|.||+|.+.. .+|||+|.|-+.|+..+ ..||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 599999999976 34699999999999755 359999997754
No 56
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.20 E-value=0.0025 Score=56.60 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHhhhhccC---------CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCcee-ecCC
Q 019939 25 NPYEQAISIIGKTLSSFD---------EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGP 94 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---------~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~-l~gp 94 (333)
..++.+.+.+-.++..+. .+-.+-++.|+.... .+++++.+ ....+.+.++ +..++ .+|.
T Consensus 18 ~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---~~~~l~~~---~~~~~~l~~~----i~~l~~~gg~ 87 (186)
T cd01480 18 QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---VEAGFLRD---IRNYTSLKEA----VDNLEYIGGG 87 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce---eeEecccc---cCCHHHHHHH----HHhCccCCCC
Confidence 456666666666666662 235789999997543 23343321 1233444433 33343 4789
Q ss_pred CChHHHHHHHHHHHHh--cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCccc
Q 019939 95 TSFAPIIEMAITIVEH--SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMR 172 (333)
Q Consensus 95 t~fapvI~~~~~~~~~--~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~ 172 (333)
|+....|+.+.+.... ....-.++++||||..++.. .....+++.++.+..+.|..||||..+-..|+
T Consensus 88 T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~----------~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~ 157 (186)
T cd01480 88 TFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP----------DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLS 157 (186)
T ss_pred ccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc----------chhHHHHHHHHHHCCCEEEEEecCccchHHHH
Confidence 9999999999988764 12335689999999864310 12334455556678999999999986655565
Q ss_pred ccC
Q 019939 173 EFD 175 (333)
Q Consensus 173 ~ld 175 (333)
++-
T Consensus 158 ~IA 160 (186)
T cd01480 158 RIA 160 (186)
T ss_pred HHH
Confidence 554
No 57
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.15 E-value=0.0047 Score=53.81 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMA 104 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~ 104 (333)
+..+.|...+...+...+ +..+-++.|++.... ++.+. .+...+.+.. +.+......|.|+....|+.+
T Consensus 24 ~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~------~~~~~~~~~l-~~l~~~~~~g~T~l~~al~~a 92 (180)
T cd01467 24 SRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLT------LDRESLKELL-EDIKIGLAGQGTAIGDAIGLA 92 (180)
T ss_pred CHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCC------ccHHHHHHHH-HHhhhcccCCCCcHHHHHHHH
Confidence 445556566666666654 458999999875321 12221 1222222211 122223357889999899888
Q ss_pred HHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 105 ITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 105 ~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
.+........-.++++||||..++ +..+ ..+..+ .+.+..+-|..||+|+
T Consensus 93 ~~~l~~~~~~~~~iiliTDG~~~~------g~~~--~~~~~~---~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 93 IKRLKNSEAKERVIVLLTDGENNA------GEID--PATAAE---LAKNKGVRIYTIGVGK 142 (180)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCCC------CCCC--HHHHHH---HHHHCCCEEEEEEecC
Confidence 888765444457899999997653 1111 222232 3345577888888887
No 58
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.14 E-value=0.00013 Score=71.42 Aligned_cols=42 Identities=36% Similarity=0.889 Sum_probs=37.1
Q ss_pred CeecccccCCcccee-CCCCccchhhhhcC------CCCCCcccccccc
Q 019939 288 HVCPICLTDPKDMAF-GCGHQTCCGCGQDL------DLCPICRSFIQTR 329 (333)
Q Consensus 288 ~~C~ICl~~~~~~~l-~CgH~fC~~C~~~~------~~CP~CR~~i~~~ 329 (333)
..|.||-++.+++.+ ||||..|..|+..+ ..||.||-.|+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 689999999999888 99999999999644 4899999998764
No 59
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00017 Score=68.52 Aligned_cols=42 Identities=29% Similarity=0.719 Sum_probs=35.2
Q ss_pred CCCeecccccCCcc----ceeCCCCccchhhhhcCC-----CCCCcccccc
Q 019939 286 DNHVCPICLTDPKD----MAFGCGHQTCCGCGQDLD-----LCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~~-----~CP~CR~~i~ 327 (333)
...+|.||++.+.. +++||.|.|-..|+.++. .||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34899999998854 566999999999998763 7999999874
No 60
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.08 E-value=0.0027 Score=56.21 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=76.5
Q ss_pred HHHHHHHHhhhhccC-CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHHH
Q 019939 28 EQAISIIGKTLSSFD-EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAIT 106 (333)
Q Consensus 28 ~~ai~~i~~vl~~yD-~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~~ 106 (333)
.+++..+-.++..|+ .+-.+-++.|+.... .+|+|+... +.+.++.. .+..+...|.|+....|+.+.+
T Consensus 22 ~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~---~~~~l~~~~------~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~ 91 (185)
T cd01474 22 IEIYDFVEQLVDRFNSPGLRFSFITFSTRAT---KILPLTDDS------SAIIKGLE-VLKKVTPSGQTYIHEGLENANE 91 (185)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEEecCCce---EEEeccccH------HHHHHHHH-HHhccCCCCCCcHHHHHHHHHH
Confidence 334455555666654 345899999987532 344443221 12222221 1344555799999999999987
Q ss_pred HHH--hcCCce--EEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 107 IVE--HSGGQY--HVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 107 ~~~--~~~~~y--~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
... ..+... .++++||||..++.. ...+.++...+.+.-+-|..||||+.+.+.|+++-
T Consensus 92 ~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~~a~~l~~~gv~i~~vgv~~~~~~~L~~iA 154 (185)
T cd01474 92 QIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEHEAKLSRKLGAIVYCVGVTDFLKSQLINIA 154 (185)
T ss_pred HHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHHHHHHHHHcCCEEEEEeechhhHHHHHHHh
Confidence 763 222221 678999999975310 11223333344456778889999887777777765
No 61
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.06 E-value=0.0037 Score=57.16 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHhhhhccCCC---CccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPI 100 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~d---~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapv 100 (333)
...++++...+..++..|+.. -.+-++.|+.... .+|+|+.. ...+.+.++-.. +.. +.|.|+-...
T Consensus 17 ~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~----~~~~~l~~~i~~-i~~--~~~~t~tg~A 86 (224)
T cd01475 17 PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF----KSKADLKRAVRR-MEY--LETGTMTGLA 86 (224)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc----CCHHHHHHHHHh-CcC--CCCCChHHHH
Confidence 356888888899898888643 4799999998743 24554421 233444444332 222 3567887778
Q ss_pred HHHHHHHHH--hc---CCc---eEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCccc
Q 019939 101 IEMAITIVE--HS---GGQ---YHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMR 172 (333)
Q Consensus 101 I~~~~~~~~--~~---~~~---y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~ 172 (333)
|+.+.+.+- .. ... -.++++||||...| +..+..+.++ +.-+.|..||||+.+.+.|+
T Consensus 87 L~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~-----------~~~~~a~~lk---~~gv~i~~VgvG~~~~~~L~ 152 (224)
T cd01475 87 IQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD-----------DVSEVAAKAR---ALGIEMFAVGVGRADEEELR 152 (224)
T ss_pred HHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------cHHHHHHHHH---HCCcEEEEEeCCcCCHHHHH
Confidence 888776531 11 111 47899999998765 2344444444 45688999999987766666
Q ss_pred ccC
Q 019939 173 EFD 175 (333)
Q Consensus 173 ~ld 175 (333)
++-
T Consensus 153 ~ia 155 (224)
T cd01475 153 EIA 155 (224)
T ss_pred HHh
Confidence 554
No 62
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.00 E-value=0.0046 Score=53.04 Aligned_cols=95 Identities=17% Similarity=0.249 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHhhhh---ccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~---~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
+.++++...+-.++. ..+..-.+-+.-||.... .+|.|+- -...+.+++.- .......+|.|+++..|
T Consensus 15 ~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~----~~~~~~~~~~i--~~~~~~~~g~t~~~~aL 85 (178)
T PF00092_consen 15 DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTD----YQSKNDLLNAI--NDSIPSSGGGTNLGAAL 85 (178)
T ss_dssp HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTS----HSSHHHHHHHH--HTTGGCCBSSB-HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccceeeeecccc---ccccccc----ccccccccccc--cccccccchhhhHHHHH
Confidence 346666666666666 455566799999998654 3334321 12344444432 13345567999999999
Q ss_pred HHHHHHHHhc-----CCceEEEEEEecCcccc
Q 019939 102 EMAITIVEHS-----GGQYHVLVIIADGQVTR 128 (333)
Q Consensus 102 ~~~~~~~~~~-----~~~y~vLlIiTDG~i~d 128 (333)
+.+.+..... .....++++||||..++
T Consensus 86 ~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~ 117 (178)
T PF00092_consen 86 KFAREQLFSSNNGGRPNSPKVIILITDGNSND 117 (178)
T ss_dssp HHHHHHTTSGGGTTGTTSEEEEEEEESSSSSS
T ss_pred hhhhhcccccccccccccccceEEEEeecccC
Confidence 9999986432 35688999999999887
No 63
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.99 E-value=0.00024 Score=54.10 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCeecccccCCcc-ceeCCCCccchhhhhc-----CCCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQD-----LDLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~-----~~~CP~CR~~i~~ 328 (333)
++..|+||.+.+.+ ++++|||.|++.|+.+ ...||+|++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 56899999999999 7779999999999963 3579999998875
No 64
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=96.98 E-value=0.0069 Score=62.83 Aligned_cols=126 Identities=14% Similarity=0.233 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHhhhhccCCCC-ccc--eEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDEDN-LIP--CFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPI 100 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~d~-~ip--~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapv 100 (333)
.|-.++|...+..++..++-.. .+- +..|+.... .+|.+.... -...+.++.+-.++...+..+|.|++...
T Consensus 58 ~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL~s~~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~A 132 (576)
T PTZ00441 58 HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRLGSGA--SKDKEQALIIVKSLRKTYLPYGKTNMTDA 132 (576)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEecCCCc--cccHHHHHHHHHHHHhhccCCCCccHHHH
Confidence 3555788888888888886432 333 468877533 234433211 12345566666666566667899999999
Q ss_pred HHHHHHHHHhc---CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 101 IEMAITIVEHS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 101 I~~~~~~~~~~---~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
++.+.+...+. ...--++++||||.-++ ..++++++....+.-+-|..||||.+
T Consensus 133 L~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 133 LLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 99988876543 12346899999998654 23455555555567889999999974
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.96 E-value=0.00092 Score=64.62 Aligned_cols=53 Identities=30% Similarity=0.732 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC------CCCCCcccccccc
Q 019939 277 TAPPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL------DLCPICRSFIQTR 329 (333)
Q Consensus 277 ~~~~~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~------~~CP~CR~~i~~~ 329 (333)
+++.....+++..|.||-+...- .++||+|..|..|+-++ +.|++||..-..+
T Consensus 51 tsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 34444556677899999988877 45699999999999755 5899999865544
No 66
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=96.95 E-value=0.008 Score=52.94 Aligned_cols=121 Identities=20% Similarity=0.304 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPI 100 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapv 100 (333)
+..|+++..-+..++..|+. +-.+-+..|+.... ..|+|. + ....+.++++-.. ++ .+.|.|+....
T Consensus 15 ~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~--~--~~~~~~~~~~i~~-~~--~~~g~T~~~~A 84 (177)
T cd01469 15 PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLN--E--YRTKEEPLSLVKH-IS--QLLGLTNTATA 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecC--c--cCCHHHHHHHHHh-Cc--cCCCCccHHHH
Confidence 35788899889999998887 34789999998642 234443 1 2234455544332 22 24688999999
Q ss_pred HHHHHHHH--Hhc---CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 101 IEMAITIV--EHS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 101 I~~~~~~~--~~~---~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
|+.+.+.. ... .....++++||||..++. ..+.+++..+-..-+-|.-||||+.
T Consensus 85 L~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~------------~~~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 85 IQYVVTELFSESNGARKDATKVLVVITDGESHDD------------PLLKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCc------------cccHHHHHHHHHCCcEEEEEEeccc
Confidence 99998875 222 124678899999998762 1223445555567899999999984
No 67
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0004 Score=63.47 Aligned_cols=44 Identities=30% Similarity=0.734 Sum_probs=38.2
Q ss_pred ecccccCCcccee-CCCCccch-hhhhcCCCCCCcccccccccccC
Q 019939 290 CPICLTDPKDMAF-GCGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 290 C~ICl~~~~~~~l-~CgH~fC~-~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
|..|.+....|++ ||.|..+| .|...+..||+|+.+....+.+|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 9999999998665 99999655 99988889999999988887765
No 68
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=96.91 E-value=0.012 Score=55.76 Aligned_cols=130 Identities=16% Similarity=0.324 Sum_probs=85.5
Q ss_pred CCCCccccCCCCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeec
Q 019939 13 QRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLA 92 (333)
Q Consensus 13 ~~~sLH~~~~~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~ 92 (333)
+.+|+..-+-.+|..+ |+..|.+.+..... +.+-+.+||.... .+.+|+- + ... + +.-+++....+.
T Consensus 69 ~S~SM~~~~~~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~--d-~~~-~----a~~~~l~~~~f~ 135 (266)
T cd01460 69 DSKSMSENNSKKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDE--Q-FSS-Q----SGPRILNQFTFQ 135 (266)
T ss_pred cchhcccccccccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCC--C-chh-h----HHHHHhCcccCC
Confidence 4677776655678877 89999999988875 6899999998632 1222221 1 111 1 122233333333
Q ss_pred -CCCChHHHHHHHHHHHHhc-----CC-ceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 93 -GPTSFAPIIEMAITIVEHS-----GG-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 93 -gpt~fapvI~~~~~~~~~~-----~~-~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
+.|+.+..|+.+.+..+.. ++ ...++||||||.-.+. ......++.+|.+..+.+++|||=+
T Consensus 136 ~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~~~~~~r~a~e~~i~l~~I~ld~ 204 (266)
T cd01460 136 QDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGAQKVRLREAREQNVFVVFIIIDN 204 (266)
T ss_pred CCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccHHHHHHHHHHHcCCeEEEEEEcC
Confidence 6799999999999887543 11 1378999999994331 2333344778888899999999966
Q ss_pred C
Q 019939 166 G 166 (333)
Q Consensus 166 ~ 166 (333)
.
T Consensus 205 ~ 205 (266)
T cd01460 205 P 205 (266)
T ss_pred C
Confidence 4
No 69
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00083 Score=63.09 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=35.4
Q ss_pred CCCCeecccccCCcc-cee-CCCCccchhhhhcC------CCCCCcccccc
Q 019939 285 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPICRSFIQ 327 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~------~~CP~CR~~i~ 327 (333)
....+|++|-+.+.. .+. +|||.+|..|+... ..||.|-.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 457899999999998 444 79999999999743 38999988765
No 70
>PRK13685 hypothetical protein; Provisional
Probab=96.86 E-value=0.014 Score=56.76 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCccccCCCCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCC
Q 019939 15 RSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGP 94 (333)
Q Consensus 15 ~sLH~~~~~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gp 94 (333)
.|+-..+..+|..+.|-..+..++..+.++..+-++.|++.... +.+++ ...+.+ ...+..+...|-
T Consensus 99 ~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t------~d~~~l----~~~l~~l~~~~~ 165 (326)
T PRK13685 99 QSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT------TNREAT----KNAIDKLQLADR 165 (326)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC------CCHHHH----HHHHHhCCCCCC
Confidence 35544444568999999999999999877778999999986431 11221 233222 223345556788
Q ss_pred CChHHHHHHHHHHHHh--------cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 95 TSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 95 t~fapvI~~~~~~~~~--------~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
|+...-|..+.+..++ .+...-.+++||||.-+...+ +.+.....++...|.+..+.|-.||||..
T Consensus 166 T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 166 TATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRGAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred cchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCcccHHHHHHHHHHcCCeEEEEEECCC
Confidence 8888889888877652 122245688999998653100 00011223455566677888888899863
No 71
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.78 E-value=0.00058 Score=52.15 Aligned_cols=36 Identities=31% Similarity=0.848 Sum_probs=27.0
Q ss_pred CeecccccCCc-----------c--cee-CCCCccchhhhhcC----CCCCCcc
Q 019939 288 HVCPICLTDPK-----------D--MAF-GCGHQTCCGCGQDL----DLCPICR 323 (333)
Q Consensus 288 ~~C~ICl~~~~-----------~--~~l-~CgH~fC~~C~~~~----~~CP~CR 323 (333)
..|.||++.+. + +.+ +|||.|...|+.+. ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35999999871 2 233 89999999999743 5899998
No 72
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.77 E-value=0.00075 Score=67.15 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=36.7
Q ss_pred CCCCCCCCeecccccCCcc-c----eeCCCCccchhhhhcCC--CCCCccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-M----AFGCGHQTCCGCGQDLD--LCPICRSFI 326 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~----~l~CgH~fC~~C~~~~~--~CP~CR~~i 326 (333)
+..+.+..+|+||++.... + ++.|-|.|-+.|+.++. +||+||-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q 221 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ 221 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence 3345678899999998876 2 23999999999998874 899999643
No 73
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=96.72 E-value=0.014 Score=52.63 Aligned_cols=125 Identities=10% Similarity=0.129 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHhhhhccCC---------CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCC
Q 019939 24 QNPYEQAISIIGKTLSSFDE---------DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGP 94 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~---------d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gp 94 (333)
.+.++++..-+..++..++. .-.+-+.-|+.... ..|+|+ .....+.++++....+..+..+|.
T Consensus 34 ~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~~~L~----d~~~~~~~~~ai~~~~~~~~~~gg 106 (193)
T cd01477 34 QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VVADLN----DLQSFDDLYSQIQGSLTDVSSTNA 106 (193)
T ss_pred hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EEEecc----cccCHHHHHHHHHHHhhccccCCc
Confidence 45689998888888887775 24788888987533 224442 134567777777765555655678
Q ss_pred CChHHHHHHHHHHHHhc-----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 95 TSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 95 t~fapvI~~~~~~~~~~-----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
|+....|+.+.+..... ....-++++||||.-... .....++..++.+.-+-|.-||||..
T Consensus 107 T~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-----------~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 107 SYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-----------SNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred chHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC-----------CCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 99999999998887532 123678999999854321 01122333444567899999999974
No 74
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.71 E-value=0.013 Score=51.33 Aligned_cols=127 Identities=17% Similarity=0.288 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cC-CCChH
Q 019939 24 QNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AG-PTSFA 98 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~g-pt~fa 98 (333)
...|+++..-+..++..|+- .-.+.+.-|+.... ..|.|+- ....++++++-.+ ++. .| .|+-.
T Consensus 15 ~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~----~~~~~~l~~~i~~----i~~~~g~~t~t~ 83 (165)
T cd01481 15 SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNT----HSTKADVLGAVRR----LRLRGGSQLNTG 83 (165)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEeccc----cCCHHHHHHHHHh----cccCCCCcccHH
Confidence 46788888888899888874 45788999987643 2355431 1245566665443 333 35 47889
Q ss_pred HHHHHHHHHHH--hcC-----CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcc
Q 019939 99 PIIEMAITIVE--HSG-----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMM 171 (333)
Q Consensus 99 pvI~~~~~~~~--~~~-----~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m 171 (333)
..|+.+.+..- ..+ +...+|++||||.-.| +..+..+.+++ .-+-|..||+|..+.+.|
T Consensus 84 ~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~~~~~a~~lr~---~gv~i~~vG~~~~~~~eL 149 (165)
T cd01481 84 SALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------DVERPAVALKR---AGIVPFAIGARNADLAEL 149 (165)
T ss_pred HHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------hHHHHHHHHHH---CCcEEEEEeCCcCCHHHH
Confidence 99998877642 111 2367899999998775 24455555554 457777788886666655
Q ss_pred cccC
Q 019939 172 REFD 175 (333)
Q Consensus 172 ~~ld 175 (333)
+.+-
T Consensus 150 ~~ia 153 (165)
T cd01481 150 QQIA 153 (165)
T ss_pred HHHh
Confidence 5554
No 75
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=96.66 E-value=0.033 Score=48.93 Aligned_cols=131 Identities=16% Similarity=0.253 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHhhhh-ccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 25 NPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~-~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
+..+.|...+..++. .+..+..+-++.|+....+ .++++ -.+.+.+.+ .+..+...|.|++...++.
T Consensus 17 ~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t~~~~~~~~----~l~~l~~~G~T~l~~aL~~ 84 (178)
T cd01451 17 HRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------TRSVELAKR----RLARLPTGGGTPLAAGLLA 84 (178)
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------CCCHHHHHH----HHHhCCCCCCCcHHHHHHH
Confidence 466777777777664 3455668999999764211 11221 123333332 3344667899999999999
Q ss_pred HHHHHH-hc--CCceEEEEEEecCccccCCCcccCcCchhHHHH-HHHHHHhcCCCeEEEEEecccCCC--CcccccC
Q 019939 104 AITIVE-HS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT-VEAIVKASEYPLSIILVGVGDGPW--DMMREFD 175 (333)
Q Consensus 104 ~~~~~~-~~--~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t-~~aI~~AS~~PlSii~VGvGd~~f--~~m~~ld 175 (333)
+.+..+ +. ...-.++++||||..+...| + .... .++..++....+.|+.||+|..+. +.|++|-
T Consensus 85 a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~-------~-~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 85 AYELAAEQARDPGQRPLIVVITDGRANVGPD-------P-TADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHHHHHHhcCCCCceEEEEECCCCCCCCCC-------c-hhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHH
Confidence 998872 21 12246899999998663111 1 2222 445555567788888999987532 3455554
No 76
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.001 Score=64.86 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=33.5
Q ss_pred CCCCeecccccCCc-----------c---ceeCCCCccchhhhh----cCCCCCCccccc
Q 019939 285 SDNHVCPICLTDPK-----------D---MAFGCGHQTCCGCGQ----DLDLCPICRSFI 326 (333)
Q Consensus 285 ~~~~~C~ICl~~~~-----------~---~~l~CgH~fC~~C~~----~~~~CP~CR~~i 326 (333)
.++..|.||+|... + --+||||.+--+|++ +...||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 46789999999731 1 246999999999996 557999999984
No 77
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.60 E-value=0.012 Score=49.43 Aligned_cols=107 Identities=19% Similarity=0.308 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee--cCCCChHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL--AGPTSFAPIIE 102 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l--~gpt~fapvI~ 102 (333)
..+.+.+..|..+++.+ ...+-++-|-++......+ ... ...+..+++ .|.|+|.|+++
T Consensus 14 ~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~~~-------~~~~~~~~~~GgGGTdf~pvf~ 74 (126)
T PF09967_consen 14 EELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------RSL-------EDELRDIKLKGGGGTDFRPVFE 74 (126)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------ecc-------cccccccccCCCCCCcchHHHH
Confidence 57888999999999999 3458888888765533321 111 111122222 48999999999
Q ss_pred HHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEec--ccCCCCcccc
Q 019939 103 MAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGV--GDGPWDMMRE 173 (333)
Q Consensus 103 ~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGv--Gd~~f~~m~~ 173 (333)
.+.+. .....++++||||..... ..+-.+|+-|++.|- ...+|+..-+
T Consensus 75 ~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~P~~~vlWvl~~~~~~~~P~G~vv~ 124 (126)
T PF09967_consen 75 YLEEN----RPRPSVVIYFTDGEGWPP-------------------EEAPPYPVLWVLPGNRNPKAPFGRVVR 124 (126)
T ss_pred HHHhc----CCCCCEEEEEeCCCCCCC-------------------CCCCCCcEEEEEeCCCCCCCCCEEEEE
Confidence 98654 334678899999987531 112278999999992 2334554433
No 78
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.00084 Score=66.90 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=38.3
Q ss_pred CCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
....+..|.||...+-. ++.||||.||..|+.+. ..||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 33678999999998888 67799999999997654 489999988764
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.44 E-value=0.0019 Score=46.55 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=35.7
Q ss_pred CCCeecccccCCcc-ceeCCCCccchhhhh--cCCCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQ--DLDLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~--~~~~CP~CR~~i~~ 328 (333)
.+..|..|....+. ++++|||..|..|-. +...||+|..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 45688889888766 778999999999975 56799999998864
No 80
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.00098 Score=64.58 Aligned_cols=44 Identities=32% Similarity=0.939 Sum_probs=36.4
Q ss_pred CCCCeecccccCCcccee-CCCCccchhhhhcC----CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
.|+..|+||+..+.+.++ ||+|.-|..|+... +.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467799999999999777 99999999999743 577888776654
No 81
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.06 E-value=0.15 Score=46.32 Aligned_cols=139 Identities=12% Similarity=0.239 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHhhhhc---cCCCCccceEEeCCCCCC----CCcccccCCCCCCCCCHHHHHHHHHHhCC-cee-----
Q 019939 24 QNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSFYPDEKFCNGFEEVLRRYRELVP-HLR----- 90 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~---yD~d~~ip~~GFG~~~~~----~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~-~v~----- 90 (333)
++..+.|++.+..+++. ..+...+-++.||...+. ..+++.+.|-+ .-.. ..++.+.+.+. ...
T Consensus 23 ~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~ 99 (218)
T cd01458 23 ESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLD--TPGA-ERVEDLKELIEPGGLSFAGQ 99 (218)
T ss_pred CChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCC--CCCH-HHHHHHHHHhhcchhhhccc
Confidence 69999999999999997 666679999999987543 23444333211 1122 23333333322 211
Q ss_pred --ecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 91 --LAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 91 --l~gpt~fapvI~~~~~~~~~~~~--~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
-++.|.+..+|..+.+..++... .--.+++||||+-.- +.=..+.++..+.+.+..+.-+.|..||+|..
T Consensus 100 ~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 100 VGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------GGDSIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 24678999999999888764211 123688999996430 00001134555666667778899999999865
Q ss_pred C--CCcc
Q 019939 167 P--WDMM 171 (333)
Q Consensus 167 ~--f~~m 171 (333)
+ |+..
T Consensus 174 ~~~f~~~ 180 (218)
T cd01458 174 GKKFDVS 180 (218)
T ss_pred CCCCChh
Confidence 4 5533
No 82
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.04 E-value=0.075 Score=47.86 Aligned_cols=152 Identities=12% Similarity=0.188 Sum_probs=93.4
Q ss_pred CccccCCCCCHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeec
Q 019939 16 SLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLA 92 (333)
Q Consensus 16 sLH~~~~~~N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~ 92 (333)
|+-.-+-.+|-++.+...+..++..|-+ ...+-+..|+++.... +.+++ .....++.. +..+.+.
T Consensus 15 sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT------~D~~~~~~~----L~~i~~~ 82 (187)
T cd01452 15 YMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLT------NDQGKILSK----LHDVQPK 82 (187)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCC------CCHHHHHHH----HHhCCCC
Confidence 3333334689999999999988744433 3467888888743321 11222 123334333 3345667
Q ss_pred CCCChHHHHHHHHHHHHhcC---CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC--
Q 019939 93 GPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-- 167 (333)
Q Consensus 93 gpt~fapvI~~~~~~~~~~~---~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~-- 167 (333)
|.+++...|+.|....+... ..=-|++|++++.-.| .....+++.++.+..+.+-+||+|+..
T Consensus 83 g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~~~~~lkk~~I~v~vI~~G~~~~~ 150 (187)
T cd01452 83 GKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVKLAKRLKKNNVSVDIINFGEIDDN 150 (187)
T ss_pred CcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHHHHHHHHHcCCeEEEEEeCCCCCC
Confidence 99999999999987765332 2224677777764444 455667777777889999999999752
Q ss_pred CCcccccCCCCCCcccceeeeeeccc
Q 019939 168 WDMMREFDDNIPARAFDNFQFVNFTE 193 (333)
Q Consensus 168 f~~m~~ld~~~~~r~~DnvqFv~~~~ 193 (333)
=+.|+.|-+... .-||-+||....
T Consensus 151 ~~~l~~~~~~~~--~~~~s~~~~~~~ 174 (187)
T cd01452 151 TEKLTAFIDAVN--GKDGSHLVSVPP 174 (187)
T ss_pred HHHHHHHHHHhc--CCCCceEEEeCC
Confidence 222333322222 136778877654
No 83
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0026 Score=66.07 Aligned_cols=42 Identities=29% Similarity=0.746 Sum_probs=34.5
Q ss_pred CCCCeecccccCCcc------ceeCCCCccchhhhhcC----CCCCCccccc
Q 019939 285 SDNHVCPICLTDPKD------MAFGCGHQTCCGCGQDL----DLCPICRSFI 326 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~------~~l~CgH~fC~~C~~~~----~~CP~CR~~i 326 (333)
.....|.||+|.... ..++|||.||..|++.+ ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 457899999998866 34599999999999754 6999999843
No 84
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.61 E-value=0.0058 Score=58.85 Aligned_cols=46 Identities=33% Similarity=0.743 Sum_probs=38.6
Q ss_pred CCCCCCeecccccCCccceeCC--CCccchhhh-hcCCCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKDMAFGC--GHQTCCGCG-QDLDLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~~~l~C--gH~fC~~C~-~~~~~CP~CR~~i~~ 328 (333)
..-+-..||||.+.....++.| ||..|..|- +....||.||.++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence 3445689999999999888888 899999998 455699999999874
No 85
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.52 E-value=0.0063 Score=54.81 Aligned_cols=42 Identities=29% Similarity=0.641 Sum_probs=34.3
Q ss_pred CCeecccccCCcc-ceeCCCCccchhhhhc----CCCCCCccccccc
Q 019939 287 NHVCPICLTDPKD-MAFGCGHQTCCGCGQD----LDLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~----~~~CP~CR~~i~~ 328 (333)
...|-||...+.. ++..|||.||..|+.+ -..|-+|......
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 4799999999988 6779999999999853 3489999775543
No 86
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.0056 Score=59.96 Aligned_cols=46 Identities=28% Similarity=0.615 Sum_probs=36.7
Q ss_pred CCCCeecccccCCccce---------eCCCCccchhhhhcC-----------CCCCCccccccccc
Q 019939 285 SDNHVCPICLTDPKDMA---------FGCGHQTCCGCGQDL-----------DLCPICRSFIQTRI 330 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~---------l~CgH~fC~~C~~~~-----------~~CP~CR~~i~~~i 330 (333)
..+..|-||++...+.. .+|-|.||..|+.++ +.||.||.....++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45789999999876644 379999999999633 58999999876654
No 87
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.012 Score=56.70 Aligned_cols=49 Identities=27% Similarity=0.625 Sum_probs=35.1
Q ss_pred CCCCeecccccCCcc-cee-CCCCccchhhhh----cCCCCCCccccc--ccccccC
Q 019939 285 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQ----DLDLCPICRSFI--QTRIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~----~~~~CP~CR~~i--~~~i~~y 333 (333)
.+...|+||+....+ .++ --|..||..|+. ....||+-.-+. +.-+|+|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 356799999998888 555 569999999995 446899754443 3444443
No 88
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.27 E-value=0.0043 Score=59.78 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=39.0
Q ss_pred CCCCCCeecccccCCccc-ee-CCCCccchhhhhc----CCCCCCccccccccc
Q 019939 283 STSDNHVCPICLTDPKDM-AF-GCGHQTCCGCGQD----LDLCPICRSFIQTRI 330 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~~-~l-~CgH~fC~~C~~~----~~~CP~CR~~i~~~i 330 (333)
......+|.+|-..+.|+ ++ .|-|.||..|+-+ ...||.|...|.+..
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 345678999999999994 34 9999999999953 469999998886653
No 89
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.23 E-value=0.21 Score=52.51 Aligned_cols=142 Identities=12% Similarity=0.184 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHhhhhc-cCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHH
Q 019939 24 QNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE 102 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~-yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~ 102 (333)
.+..+.|-..+..++.. |-....+-++.|+..... .++++ -.+.+.+ ++.+..+..+|.|.++..|.
T Consensus 422 ~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~------t~~~~~~----~~~L~~l~~gGgTpL~~gL~ 489 (589)
T TIGR02031 422 VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP------SRSVEQA----KRRLDVLPGGGGTPLAAGLA 489 (589)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC------CCCHHHH----HHHHhcCCCCCCCcHHHHHH
Confidence 35677777777777764 433447999999754211 11221 2344433 34466777899999999999
Q ss_pred HHHHHHHhcC--CceEEEEEEecCccccCCCcccCcCchh----HHHHHHHHHHhcCCCeEEEEEecccCCC--Cccccc
Q 019939 103 MAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQ----EKKTVEAIVKASEYPLSIILVGVGDGPW--DMMREF 174 (333)
Q Consensus 103 ~~~~~~~~~~--~~y~vLlIiTDG~i~d~~~~~~~~~~~~----~~~t~~aI~~AS~~PlSii~VGvGd~~f--~~m~~l 174 (333)
.+.+..++.. ..-.++++||||.-+-..+-..+...++ .++...+........+.+++||+|.+.. +.+++|
T Consensus 490 ~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~l 569 (589)
T TIGR02031 490 AAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKL 569 (589)
T ss_pred HHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHH
Confidence 9998876432 2235789999998653111000000000 1122222233345668999999997643 346666
Q ss_pred CCC
Q 019939 175 DDN 177 (333)
Q Consensus 175 d~~ 177 (333)
-+.
T Consensus 570 A~~ 572 (589)
T TIGR02031 570 ARK 572 (589)
T ss_pred HHh
Confidence 533
No 90
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.08 E-value=0.012 Score=46.22 Aligned_cols=41 Identities=29% Similarity=0.692 Sum_probs=29.1
Q ss_pred CCeecccccCCc-----------c--cee-CCCCccchhhhhcC-------CCCCCcccccc
Q 019939 287 NHVCPICLTDPK-----------D--MAF-GCGHQTCCGCGQDL-------DLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~-----------~--~~l-~CgH~fC~~C~~~~-------~~CP~CR~~i~ 327 (333)
+..|.||...+. + .++ .|+|.|-..|+.+. ..||+||++.+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456666665442 3 233 89999999999532 48999999865
No 91
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.07 E-value=0.28 Score=51.65 Aligned_cols=151 Identities=13% Similarity=0.222 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHhhhh-ccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 25 NPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~-~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
|.-..|-.++..+|. .|-..-.+-++.|+..... .+.+. -..++.+ ++.+..+.-+|.|.++.-|..
T Consensus 417 ~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~--~~lpp------T~~~~~~----~~~L~~l~~gGgTpL~~gL~~ 484 (584)
T PRK13406 417 HRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE--LLLPP------TRSLVRA----KRSLAGLPGGGGTPLAAGLDA 484 (584)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee--EEcCC------CcCHHHH----HHHHhcCCCCCCChHHHHHHH
Confidence 556666666666663 4766668999999654221 11211 1233333 234456777899999999999
Q ss_pred HHHHHHhc--CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccCCCCCCc
Q 019939 104 AITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPAR 181 (333)
Q Consensus 104 ~~~~~~~~--~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld~~~~~r 181 (333)
+.+..+.. .+.-.++++||||..+...+...|. .....+...+...+...-+.+++|++|....+.|++|-+.+.
T Consensus 485 A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~~~g-- 561 (584)
T PRK13406 485 AAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAARALRAAGLPALVIDTSPRPQPQARALAEAMG-- 561 (584)
T ss_pred HHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHhcC--
Confidence 99887543 2234688999999876321100000 111234455555556667889999999887777777764333
Q ss_pred ccceeeeeecccc
Q 019939 182 AFDNFQFVNFTEI 194 (333)
Q Consensus 182 ~~DnvqFv~~~~~ 194 (333)
..|+.+.+.
T Consensus 562 ----g~y~~l~~~ 570 (584)
T PRK13406 562 ----ARYLPLPRA 570 (584)
T ss_pred ----CeEEECCCC
Confidence 346666655
No 92
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=94.64 E-value=0.35 Score=44.36 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHH
Q 019939 26 PYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAI 105 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~ 105 (333)
.|-..+..+...+..-- ..+.+|-|+.........+. -.+..+.+........ .++|.|+++..++++.
T Consensus 72 ~~s~~~l~~~~~l~~~~--~~~~~f~F~~~l~~vT~~l~-------~~~~~~~l~~~~~~~~--~~~GgTdi~~aL~~~~ 140 (222)
T PF05762_consen 72 GYSEFMLAFLYALQRQF--RRVRVFVFSTRLTEVTPLLR-------RRDPEEALARLSALVQ--SFGGGTDIGQALREFL 140 (222)
T ss_pred HHHHHHHHHHHHHHHhC--CCEEEEEEeeehhhhhhhhc-------cCCHHHHHHHHHhhcc--CCCCccHHHHHHHHHH
Confidence 45555544444333222 26899999986543222110 1244455554443333 3789999999999999
Q ss_pred HHHHhcCCceEEEEEEecCc
Q 019939 106 TIVEHSGGQYHVLVIIADGQ 125 (333)
Q Consensus 106 ~~~~~~~~~y~vLlIiTDG~ 125 (333)
+......-.-++||||+||.
T Consensus 141 ~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 141 RQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred HHhhcccccCcEEEEEeccc
Confidence 88764322467899999993
No 93
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.015 Score=55.29 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=35.3
Q ss_pred CeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCcccccccc
Q 019939 288 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 288 ~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
..|-||...+.+ |+..|||.||..|+.+. ..|.+|.+.+...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 469999999998 77799999999998643 5899999877654
No 94
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.48 E-value=0.012 Score=41.30 Aligned_cols=37 Identities=38% Similarity=0.920 Sum_probs=17.5
Q ss_pred ecccccCCcc--cee---CCCCccchhhhhcC-----CCCCCccccc
Q 019939 290 CPICLTDPKD--MAF---GCGHQTCCGCGQDL-----DLCPICRSFI 326 (333)
Q Consensus 290 C~ICl~~~~~--~~l---~CgH~fC~~C~~~~-----~~CP~CR~~i 326 (333)
|++|.+.... ..+ +||+..|..|..+. ..||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887733 333 78999999997543 3799999874
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.37 E-value=0.022 Score=60.41 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=37.0
Q ss_pred CCCCeecccccCCcc-ce---eCCCCccchhhhhcC----CCCCCccccccccc
Q 019939 285 SDNHVCPICLTDPKD-MA---FGCGHQTCCGCGQDL----DLCPICRSFIQTRI 330 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~---l~CgH~fC~~C~~~~----~~CP~CR~~i~~~i 330 (333)
.....|++|+....+ .. ..|+|.||..|+..+ ..||+||..+..++
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 345789999998887 22 289999999999765 48999999887654
No 96
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=94.34 E-value=0.44 Score=45.18 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHhhhhc-cCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCC-----------ceeec
Q 019939 25 NPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVP-----------HLRLA 92 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~-yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~-----------~v~l~ 92 (333)
+....+...+...+.. +..+..+-++.|+..... ++.++ ...+.+.++.....+ .+...
T Consensus 68 ~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t------~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 138 (296)
T TIGR03436 68 NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT------SDPRLLEAALNRLKPPLRTDYNSSGAFVRDG 138 (296)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC------CCHHHHHHHHHhccCCCccccccccccccCC
Confidence 4566777778888866 667789999999976432 12222 123334443333222 12336
Q ss_pred CCCChHHHHHHHH-HHHHhcC----CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 93 GPTSFAPIIEMAI-TIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 93 gpt~fapvI~~~~-~~~~~~~----~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
|.|+....|..+. +...+.. +. -++++||||.-+.+ .....+++..+.+..+.|-.||+|+
T Consensus 139 g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~-----------~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 139 GGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS-----------RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred CcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch-----------HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 8888887775554 3332221 22 47999999975431 1222233333445567888888875
No 97
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=94.04 E-value=0.34 Score=43.80 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHH--HHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 26 PYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFE--EVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~--gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
.-..|...+.+.+..|.+....+-.||++.......++ .+.|.-..-+ .++...-.- -++-+.|+.-= ..|..
T Consensus 25 ~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~lt---~d~p~t~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~ 99 (191)
T cd01455 25 RSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFVK---TNHPPKNNKERLETLKMMHAH-SQFCWSGDHTV-EATEF 99 (191)
T ss_pred cHHHHHHHHHHHHHHHHHhCccceeeecCcccccCccc---cccCcccchhHHHHHHHHHHh-cccCccCccHH-HHHHH
Confidence 34445555555566666777788888876533211111 1222222222 233322221 13344565333 88888
Q ss_pred HHHHHH-hcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 104 AITIVE-HSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 104 ~~~~~~-~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
+++..+ ++..+--|++.||||..+. +.++|. +. +-.-|.+.-+=|--||||..+.+.++.+-
T Consensus 100 av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~--~a--Aa~lA~~~gV~iytIgiG~~d~~~l~~iA 162 (191)
T cd01455 100 AIKELAAKEDFDEAIVIVLSDANLER------YGIQPK--KL--ADALAREPNVNAFVIFIGSLSDEADQLQR 162 (191)
T ss_pred HHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChH--HH--HHHHHHhCCCEEEEEEecCCCHHHHHHHH
Confidence 888876 6554556899999999764 334331 11 12224455666667777775545555443
No 98
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=0.031 Score=51.99 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=37.2
Q ss_pred CCCeecccccCCcc----cee-CCCCccchhhhhcC----CCCCCcccccccc
Q 019939 286 DNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
....|+||.+...+ ++| +|||.+|.+|.+++ ..||+|-.+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 56899999999988 345 99999999999977 3899999988754
No 99
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.023 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.941 Sum_probs=21.4
Q ss_pred ceeCCCCccchhhhhcC----CCCCCccc
Q 019939 300 MAFGCGHQTCCGCGQDL----DLCPICRS 324 (333)
Q Consensus 300 ~~l~CgH~fC~~C~~~~----~~CP~CR~ 324 (333)
.+++|||+||..|+... ..||.||.
T Consensus 27 ~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 27 VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 56799999999999865 48999993
No 100
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.74 E-value=0.047 Score=54.61 Aligned_cols=45 Identities=36% Similarity=0.956 Sum_probs=37.6
Q ss_pred CCCCCeecccccCCcc-ce-eCCCCccchhhhhcC----CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~-l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
.+++..|++|.....+ +. ..|||.||..|+... ..||.||..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 6788999999999999 44 399999999999754 489999887653
No 101
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.46 E-value=0.055 Score=51.05 Aligned_cols=45 Identities=18% Similarity=0.473 Sum_probs=37.4
Q ss_pred CCCCCeecccccCCcc----cee-CCCCccchhhhhcCC---CCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDLD---LCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~----~~l-~CgH~fC~~C~~~~~---~CP~CR~~i~~ 328 (333)
......|||+...+.. +.+ +|||.|+..++..+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 4567899999988743 455 999999999998776 79999999874
No 102
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=93.35 E-value=0.78 Score=48.70 Aligned_cols=133 Identities=13% Similarity=0.213 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHhhhh-ccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 25 NPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~-~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
+..+.|...+..++. .|-....+-+++|++... ..++++ -.+.+.+. ..+..+...|.|.++..|..
T Consensus 482 ~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~------t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~ 549 (633)
T TIGR02442 482 GRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP------TSSVELAA----RRLEELPTGGRTPLAAGLLK 549 (633)
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC------CCCHHHHH----HHHHhCCCCCCCCHHHHHHH
Confidence 577777777777664 465667899999975311 112221 13333332 23445667899999999999
Q ss_pred HHHHHHh----cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC--CCCccccc
Q 019939 104 AITIVEH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG--PWDMMREF 174 (333)
Q Consensus 104 ~~~~~~~----~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~--~f~~m~~l 174 (333)
+.+..+. ....-.++++||||.-+.. |.. ..-.++...+-....+.-+.+++|+.+.+ +.+.+++|
T Consensus 550 A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~~----~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~l 621 (633)
T TIGR02442 550 AAEVLSNELLRDDDGRPLLVVITDGRANVA-DGG----EPPTDDARTIAAKLAARGILFVVIDTESGFVRLGLAEDL 621 (633)
T ss_pred HHHHHHHhhccCCCCceEEEEECCCCCCCC-CCC----CChHHHHHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHH
Confidence 9988763 2223468899999986542 110 01123333333333345677888888664 23444444
No 103
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.26 E-value=0.022 Score=58.04 Aligned_cols=44 Identities=23% Similarity=0.631 Sum_probs=35.6
Q ss_pred CCCCCeecccccCCcc-ceeCCCCccchhhhhcC---------CCCCCcccccc
Q 019939 284 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL---------DLCPICRSFIQ 327 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~---------~~CP~CR~~i~ 327 (333)
..++.+|.+|-+...+ +...|.|.||+.|+... ..||.|...+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 4567899999999998 55699999999999522 48999987553
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.07 E-value=0.034 Score=53.94 Aligned_cols=43 Identities=30% Similarity=0.757 Sum_probs=31.9
Q ss_pred CCCeecccccCCcc---cee--CCCCccchhhhhcC-----CCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD---MAF--GCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~---~~l--~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
++..|+.|++.... -.+ +||...|.-|.... -.||.||+..+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 44559999997643 233 78999999998644 389999987654
No 105
>PRK10997 yieM hypothetical protein; Provisional
Probab=93.03 E-value=1.8 Score=44.51 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=73.0
Q ss_pred HHHHH-HHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHH
Q 019939 26 PYEQA-ISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMA 104 (333)
Q Consensus 26 ~Y~~a-i~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~ 104 (333)
.|.+| .-+++.++..=+ ..+-++.|++..... .+ +.-.|+..+++.-.. .++|.|++++.++.+
T Consensus 342 ~~AkalAaAL~~iAl~q~--dr~~li~Fs~~i~~~----~l----~~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~a 406 (487)
T PRK10997 342 QCAKAFCLALMRIALAEN--RRCYIMLFSTEVVTY----EL----TGPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAI 406 (487)
T ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEEecCCceee----cc----CCccCHHHHHHHHHH-----hcCCCCcHHHHHHHH
Confidence 55555 334444444333 346789998854321 11 223588877765533 248999999999999
Q ss_pred HHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 105 ITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 105 ~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
.+..++..-.=..+|||||+.... ++++..+.++.+.+....=+.-+.||- .++=+.|+.||
T Consensus 407 l~~l~~~~~r~adIVVISDF~~~~--------~~eel~~~L~~Lk~~~~~rf~~l~i~~-~~~p~l~~ifD 468 (487)
T PRK10997 407 IEKMQGREWFDADAVVISDFIAQR--------LPDELVAKVKELQRQHQHRFHAVAMSA-HGKPGIMRIFD 468 (487)
T ss_pred HHHHcccccCCceEEEECCCCCCC--------ChHHHHHHHHHHHHhcCcEEEEEEeCC-CCCchHHHhcC
Confidence 988765422235799999996432 112344555555555555555555542 12223456666
No 106
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=91.85 E-value=1.3 Score=48.63 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=66.3
Q ss_pred cCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHHHHHHhcCC--ceEEE
Q 019939 41 FDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVL 118 (333)
Q Consensus 41 yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~~~~~~~~~--~y~vL 118 (333)
+.++..+-++.|+....... .|.+-. . ....++-...++ ....|.|++...|+.+.+..++... .-..+
T Consensus 338 l~~~DrVGLVtFsssA~vl~---pLt~It----s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~I 408 (863)
T TIGR00868 338 VEKGSWVGMVTFDSAAYIKN---ELIQIT----S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEI 408 (863)
T ss_pred CCCCCEEEEEEECCceeEee---ccccCC----c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEE
Confidence 45567899999998643222 221100 1 112233333343 3467999999999999998765421 12367
Q ss_pred EEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 119 VIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 119 lIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
++||||+-.+ ..+..+ ++.+..+.|--||+|...=..|+++-
T Consensus 409 ILLTDGedn~------------~~~~l~---~lk~~gVtI~TIg~G~dad~~L~~IA 450 (863)
T TIGR00868 409 VLLTDGEDNT------------ISSCFE---EVKQSGAIIHTIALGPSAAKELEELS 450 (863)
T ss_pred EEEeCCCCCC------------HHHHHH---HHHHcCCEEEEEEeCCChHHHHHHHH
Confidence 8889998653 233333 34445788888999975434455443
No 107
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.056 Score=54.75 Aligned_cols=42 Identities=29% Similarity=0.664 Sum_probs=31.5
Q ss_pred CCCeecccccCC-----------------cc-ceeCCCCccchhhhhcC----C-CCCCcccccc
Q 019939 286 DNHVCPICLTDP-----------------KD-MAFGCGHQTCCGCGQDL----D-LCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~-----------------~~-~~l~CgH~fC~~C~~~~----~-~CP~CR~~i~ 327 (333)
....|+||+... ++ ++.||.|.|-..|+... + .||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 447899999732 12 23399999999999754 2 7999999875
No 108
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.91 E-value=0.076 Score=56.62 Aligned_cols=40 Identities=33% Similarity=0.877 Sum_probs=32.1
Q ss_pred CeecccccCCcc-ceeCCCCccchhhhhcC------CCCCCccccccc
Q 019939 288 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL------DLCPICRSFIQT 328 (333)
Q Consensus 288 ~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~------~~CP~CR~~i~~ 328 (333)
..|.+|++ ... +...|||.+|.+|.... ..||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 444 44499999999999644 379999987754
No 109
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.15 Score=48.13 Aligned_cols=43 Identities=21% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCCeecccccCCcc-c----------eeCCCCccchhhhh------cCCCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD-M----------AFGCGHQTCCGCGQ------DLDLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~----------~l~CgH~fC~~C~~------~~~~CP~CR~~i~~ 328 (333)
++..|.||-..... + .+.|+|.|--.|++ +...||-|++.++.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 56799999875533 2 35999998888886 34699999988764
No 110
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.19 Score=48.38 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=29.1
Q ss_pred CeecccccCCcc---ceeCCCCccchhhhhcC--CCCCCccccccc
Q 019939 288 HVCPICLTDPKD---MAFGCGHQTCCGCGQDL--DLCPICRSFIQT 328 (333)
Q Consensus 288 ~~C~ICl~~~~~---~~l~CgH~fC~~C~~~~--~~CP~CR~~i~~ 328 (333)
..|+.=.+.... ..++|.|.||.+|+..- +.||.|-.++.+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 444444455544 34699999999999754 599999876654
No 111
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=88.52 E-value=1.1 Score=40.56 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=46.4
Q ss_pred CceeecCCCChHHHHHHHHHHHHhc-------C-Cce-EEEEEEecCccccCCCcccCcCchhHHHH--HHHHHHhcCCC
Q 019939 87 PHLRLAGPTSFAPIIEMAITIVEHS-------G-GQY-HVLVIIADGQVTRSVDTEHGQLSSQEKKT--VEAIVKASEYP 155 (333)
Q Consensus 87 ~~v~l~gpt~fapvI~~~~~~~~~~-------~-~~y-~vLlIiTDG~i~d~~~~~~~~~~~~~~~t--~~aI~~AS~~P 155 (333)
|.+.-.|.|.....|+.+.+.+++. + +.| .++.++|||..+| ++++- ...-.+++.
T Consensus 71 p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD-----------~w~~~~~~~~~~~~~~-- 137 (207)
T COG4245 71 PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD-----------DWQAGAALVFQGERRA-- 137 (207)
T ss_pred CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch-----------HHHhHHHHhhhccccc--
Confidence 4566679999999999998887532 2 222 4677889999997 23333 222223333
Q ss_pred eEEEEEecc--cCCCCcccccC
Q 019939 156 LSIILVGVG--DGPWDMMREFD 175 (333)
Q Consensus 156 lSii~VGvG--d~~f~~m~~ld 175 (333)
.|+++.++| ..+-..++++-
T Consensus 138 k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 138 KSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred ceEEEEEecccccccHHHHHHH
Confidence 455555555 45655555543
No 112
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.32 E-value=0.21 Score=47.86 Aligned_cols=37 Identities=32% Similarity=0.702 Sum_probs=31.6
Q ss_pred CeecccccCCcc-cee-CCCCccchhhhhc-----CCCCCCccc
Q 019939 288 HVCPICLTDPKD-MAF-GCGHQTCCGCGQD-----LDLCPICRS 324 (333)
Q Consensus 288 ~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~-----~~~CP~CR~ 324 (333)
+.|+.|-...++ +-. -|+|.||.+|+.. -..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 789999999999 555 7899999999983 358999976
No 113
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=0.2 Score=49.81 Aligned_cols=28 Identities=29% Similarity=0.708 Sum_probs=23.4
Q ss_pred CCeecccccCCcc---cee-CCCCccchhhhh
Q 019939 287 NHVCPICLTDPKD---MAF-GCGHQTCCGCGQ 314 (333)
Q Consensus 287 ~~~C~ICl~~~~~---~~l-~CgH~fC~~C~~ 314 (333)
-..|.||++...- ..+ ||+|.||..|+.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~k 215 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLK 215 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHH
Confidence 4789999998865 333 999999999996
No 114
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=86.39 E-value=4 Score=41.49 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=62.9
Q ss_pred CccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHHHHHHhcC-CceEEEEEEec
Q 019939 45 NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG-GQYHVLVIIAD 123 (333)
Q Consensus 45 ~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~~~~~~~~-~~y~vLlIiTD 123 (333)
+.+-++-|... .....+ .+...|++++++--- ..+.|.|+|...|..+++..+... .+ .=+|+|||
T Consensus 309 R~~~~~lF~s~-~~~~el------~~k~~~~~e~i~fL~-----~~f~GGTD~~~~l~~al~~~k~~~~~~-adiv~ITD 375 (437)
T COG2425 309 RDCYVILFDSE-VIEYEL------YEKKIDIEELIEFLS-----YVFGGGTDITKALRSALEDLKSRELFK-ADIVVITD 375 (437)
T ss_pred cceEEEEeccc-ceeeee------cCCccCHHHHHHHHh-----hhcCCCCChHHHHHHHHHHhhcccccC-CCEEEEec
Confidence 34777777651 111121 244568988887322 234566999999999999988542 23 34899999
Q ss_pred CccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEe
Q 019939 124 GQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVG 162 (333)
Q Consensus 124 G~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VG 162 (333)
|.-.. +.+....++.+.++++.=+--|+||
T Consensus 376 g~~~~---------~~~~~~~v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 376 GEDER---------LDDFLRKVKELKKRRNARLHAVLIG 405 (437)
T ss_pred cHhhh---------hhHHHHHHHHHHHHhhceEEEEEec
Confidence 97432 1246778888888888777666664
No 115
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.54 E-value=0.47 Score=37.77 Aligned_cols=31 Identities=23% Similarity=0.644 Sum_probs=24.8
Q ss_pred CCCCeecccccCCcc---ceeCCCCccchhhhhc
Q 019939 285 SDNHVCPICLTDPKD---MAFGCGHQTCCGCGQD 315 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~---~~l~CgH~fC~~C~~~ 315 (333)
.+...|.+|-....+ +++||||.+...|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 456789999998876 3459999999899753
No 116
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=85.47 E-value=0.38 Score=34.96 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCCeecccccCCcc-cee-CCCCccchhhhhcC------CCCCC
Q 019939 286 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPI 321 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~------~~CP~ 321 (333)
-...|+|.+..+.+ +.- .|||.|.++.+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999999999 443 89999999988643 36887
No 117
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=85.22 E-value=5.4 Score=37.72 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=56.2
Q ss_pred HhCCceeecCCCChHHHHHHHHHHHHhcC----CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEE
Q 019939 84 ELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSII 159 (333)
Q Consensus 84 ~~~~~v~l~gpt~fapvI~~~~~~~~~~~----~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii 159 (333)
+.+..+..+|-|-.++-|..+.++..... ..-.++|+||||...+... +++ +.++..+-.+....++=++
T Consensus 143 ~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~-----~~~-~~e~~~~a~~~~~~g~~~l 216 (261)
T COG1240 143 RALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIP-----LGP-KAETLEAASKLRLRGIQLL 216 (261)
T ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCC-----Cch-HHHHHHHHHHHhhcCCcEE
Confidence 34455677899999999999998865332 3456889999999765221 111 6777777777778888888
Q ss_pred EEecccCC
Q 019939 160 LVGVGDGP 167 (333)
Q Consensus 160 ~VGvGd~~ 167 (333)
+|....+.
T Consensus 217 vid~e~~~ 224 (261)
T COG1240 217 VIDTEGSE 224 (261)
T ss_pred EEecCCcc
Confidence 88877655
No 118
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.99 E-value=0.22 Score=54.24 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=33.4
Q ss_pred CCCCCeecccccCCcc--cee------CCCCccchhhhhcC------CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD--MAF------GCGHQTCCGCGQDL------DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~--~~l------~CgH~fC~~C~~~~------~~CP~CR~~i~~ 328 (333)
.+...+|.||+..... ..+ .|.|-|-..|+-++ .+||+||..|+-
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3456899999987652 233 47899999999654 489999987753
No 119
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=83.49 E-value=0.28 Score=37.06 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=18.8
Q ss_pred CCeecccccCCc-c--c-ee-----CCCCccchhhhhcC---------------CCCCCccccccc
Q 019939 287 NHVCPICLTDPK-D--M-AF-----GCGHQTCCGCGQDL---------------DLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~-~--~-~l-----~CgH~fC~~C~~~~---------------~~CP~CR~~i~~ 328 (333)
+..|.||+.... + . .+ .|++.|-..|+.+. -.||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998754 2 1 22 57777777888422 169999998864
No 120
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=82.85 E-value=3.8 Score=37.83 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=32.6
Q ss_pred CceEEEEEEecCccccCC---CcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 113 GQYHVLVIIADGQVTRSV---DTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 113 ~~y~vLlIiTDG~i~d~~---~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
..=-+|++|+||...|.. +.+..-|..+.+++++.|... -++-++-||||.
T Consensus 134 e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~--~~Vel~aiGIg~ 187 (219)
T PF11775_consen 134 EQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIETR--SDVELIAIGIGH 187 (219)
T ss_pred ccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhcc--CCcEEEEEEcCC
Confidence 334599999999988621 122234545556666555543 478888888886
No 121
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.74 E-value=0.44 Score=40.50 Aligned_cols=43 Identities=26% Similarity=0.745 Sum_probs=34.1
Q ss_pred CCeecccccCCccce-e----CCCCccchhhhhcC-------CCCCCcccccccc
Q 019939 287 NHVCPICLTDPKDMA-F----GCGHQTCCGCGQDL-------DLCPICRSFIQTR 329 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~-l----~CgH~fC~~C~~~~-------~~CP~CR~~i~~~ 329 (333)
-.+|-||.|...+-. + -||...|-.|...+ ..||+|+..+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 468999999998844 3 38999999887544 3899999988653
No 122
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=0.31 Score=37.55 Aligned_cols=40 Identities=30% Similarity=0.636 Sum_probs=27.4
Q ss_pred CeecccccCCcc--cee-CCCCccchhhhhcC-------CCCCCcccccc
Q 019939 288 HVCPICLTDPKD--MAF-GCGHQTCCGCGQDL-------DLCPICRSFIQ 327 (333)
Q Consensus 288 ~~C~ICl~~~~~--~~l-~CgH~fC~~C~~~~-------~~CP~CR~~i~ 327 (333)
..|+-|.-.-.+ .++ -|.|.|-..|+.+. ..||+||+..+
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 455555544444 233 79999999999643 37999998764
No 123
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.44 E-value=0.33 Score=46.52 Aligned_cols=41 Identities=32% Similarity=0.692 Sum_probs=30.5
Q ss_pred CCeecccccCCcc----ceeCCCCccchhhhhcC---------------------------CCCCCcccccc
Q 019939 287 NHVCPICLTDPKD----MAFGCGHQTCCGCGQDL---------------------------DLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~---------------------------~~CP~CR~~i~ 327 (333)
...|.|||--+.+ .+.+|-|.+-+.|+.+. -.||+||..|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3578888887766 23399999988887321 16999999885
No 124
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=78.35 E-value=0.76 Score=52.31 Aligned_cols=45 Identities=27% Similarity=0.687 Sum_probs=33.2
Q ss_pred CCCCeecccccCCcc----ceeCCCCccchhhhhcC--------------CCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL--------------DLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~--------------~~CP~CR~~i~~~ 329 (333)
..+..|.||+...-. +.+.|+|.|-..|-+++ ..||+|..+|+..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 456799999986533 34599999977776422 2899999999764
No 125
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=77.30 E-value=1.1 Score=31.49 Aligned_cols=42 Identities=33% Similarity=0.721 Sum_probs=22.0
Q ss_pred eecccccCCccceeCCC-CccchhhhhcC----CCCCCcccccccccc
Q 019939 289 VCPICLTDPKDMAFGCG-HQTCCGCGQDL----DLCPICRSFIQTRIK 331 (333)
Q Consensus 289 ~C~ICl~~~~~~~l~Cg-H~fC~~C~~~~----~~CP~CR~~i~~~i~ 331 (333)
-|.-|+-..+ ..+.|. |..|..|+..+ ..||+|..++..+++
T Consensus 4 nCKsCWf~~k-~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANK-GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--S-SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCC-CeeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 4777774433 344676 77888999865 479999999887764
No 126
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=76.43 E-value=1.9 Score=42.77 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=17.2
Q ss_pred CCCccchhhhhcC-----------------CCCCCccccccc
Q 019939 304 CGHQTCCGCGQDL-----------------DLCPICRSFIQT 328 (333)
Q Consensus 304 CgH~fC~~C~~~~-----------------~~CP~CR~~i~~ 328 (333)
|.-+.|.+|+-+. -.||+||+++.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 5555677887432 279999998753
No 127
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.01 E-value=1.6 Score=47.27 Aligned_cols=41 Identities=29% Similarity=0.578 Sum_probs=32.9
Q ss_pred CeecccccCCcc--ceeCCCCccchhhhhc-CCCCCCccccccc
Q 019939 288 HVCPICLTDPKD--MAFGCGHQTCCGCGQD-LDLCPICRSFIQT 328 (333)
Q Consensus 288 ~~C~ICl~~~~~--~~l~CgH~fC~~C~~~-~~~CP~CR~~i~~ 328 (333)
..|..|-....- |.+.|||.|-..|..+ ...||.|+.....
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhh
Confidence 589999887765 4569999999999984 4699999875443
No 128
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=71.69 E-value=1.1 Score=47.73 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=36.1
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhcC-------CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-------~~CP~CR~~i~~ 328 (333)
....+|+||+..... +.+.|-|.||..|+... ..||+|+..++.
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 456899999999988 57799999999998644 379999976654
No 129
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.16 E-value=3.5 Score=39.47 Aligned_cols=29 Identities=28% Similarity=0.786 Sum_probs=24.6
Q ss_pred CCCeecccccCCcccee-CC----CCccchhhhh
Q 019939 286 DNHVCPICLTDPKDMAF-GC----GHQTCCGCGQ 314 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l-~C----gH~fC~~C~~ 314 (333)
..+.|.+|.+...|..| .| .|-||..|.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSR 300 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSR 300 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCH
Confidence 44899999999999766 77 6999999985
No 130
>PHA03096 p28-like protein; Provisional
Probab=65.92 E-value=1.9 Score=41.39 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.1
Q ss_pred CeecccccCCcc--------cee-CCCCccchhhhhc
Q 019939 288 HVCPICLTDPKD--------MAF-GCGHQTCCGCGQD 315 (333)
Q Consensus 288 ~~C~ICl~~~~~--------~~l-~CgH~fC~~C~~~ 315 (333)
..|.||++.... -.+ .|-|.||..|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~ 215 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKI 215 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHH
Confidence 689999996532 244 8999999999963
No 131
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=65.49 E-value=3.3 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.678 Sum_probs=23.3
Q ss_pred eecccccCCcc---ceeCCC-----CccchhhhhcC------CCCCCcc
Q 019939 289 VCPICLTDPKD---MAFGCG-----HQTCCGCGQDL------DLCPICR 323 (333)
Q Consensus 289 ~C~ICl~~~~~---~~l~Cg-----H~fC~~C~~~~------~~CP~CR 323 (333)
.|.||++...+ .+.||. |.+-..|+.+. ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999983322 333885 56777998643 4799994
No 132
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=65.26 E-value=3.2 Score=32.36 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=27.9
Q ss_pred CeecccccCC---ccc--ee-CCCCccchhhhhcC----CCCCCcccccc
Q 019939 288 HVCPICLTDP---KDM--AF-GCGHQTCCGCGQDL----DLCPICRSFIQ 327 (333)
Q Consensus 288 ~~C~ICl~~~---~~~--~l-~CgH~fC~~C~~~~----~~CP~CR~~i~ 327 (333)
..|+-|.... .+. +. -|.|.|--.|+.+. ..||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4566666522 222 23 79999999999764 48999998764
No 133
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=64.12 E-value=6.3 Score=28.08 Aligned_cols=21 Identities=33% Similarity=0.920 Sum_probs=13.4
Q ss_pred CCCCccchhhhh----cCCCCCCcc
Q 019939 303 GCGHQTCCGCGQ----DLDLCPICR 323 (333)
Q Consensus 303 ~CgH~fC~~C~~----~~~~CP~CR 323 (333)
.|++.||.+|-. .+.+||.|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 689999999974 567999994
No 134
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=62.99 E-value=2.1 Score=36.54 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCeecccccCCcc----ceeCCC------CccchhhhhcC
Q 019939 287 NHVCPICLTDPKD----MAFGCG------HQTCCGCGQDL 316 (333)
Q Consensus 287 ~~~C~ICl~~~~~----~~l~Cg------H~fC~~C~~~~ 316 (333)
..+|.||++...+ +.+.|| |.||.+|+.+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 5799999997755 345887 55999999876
No 135
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=62.01 E-value=1.5 Score=49.47 Aligned_cols=40 Identities=43% Similarity=1.075 Sum_probs=32.8
Q ss_pred CCCeecccccCCcc--ceeCCCCccchhhhhcC----CCCCCcccc
Q 019939 286 DNHVCPICLTDPKD--MAFGCGHQTCCGCGQDL----DLCPICRSF 325 (333)
Q Consensus 286 ~~~~C~ICl~~~~~--~~l~CgH~fC~~C~~~~----~~CP~CR~~ 325 (333)
+...|.||++..++ ..+.|||.+|+.|...+ ..||+|...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 44699999999986 56699999999998643 589999753
No 136
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=60.51 E-value=22 Score=37.55 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEecCccccCCC---cccCcCchhHHHHHHHHHHhcCC-CeEEEEEeccc
Q 019939 100 IIEMAITIVEHSGGQYHVLVIIADGQVTRSVD---TEHGQLSSQEKKTVEAIVKASEY-PLSIILVGVGD 165 (333)
Q Consensus 100 vI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~---~~~~~~~~~~~~t~~aI~~AS~~-PlSii~VGvGd 165 (333)
.|.-+.+...+.+.+=-||++|+||...|..- .+.+.|-.+++++ |...... ++=++=||||.
T Consensus 501 Al~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~v---i~~~e~~~~vel~aigIg~ 567 (600)
T TIGR01651 501 ALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAV---IEEIETRSPVELLAIGIGH 567 (600)
T ss_pred HHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHH---HHHHhccCCceEEEeeccc
Confidence 33333333333334446899999999886110 0122342333333 4444453 88888899987
No 137
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.14 E-value=3.5 Score=35.21 Aligned_cols=40 Identities=38% Similarity=0.913 Sum_probs=25.1
Q ss_pred CCCCeecccccCCccceeCCCCc-------cchhhhhcC--------CCCCCccccc
Q 019939 285 SDNHVCPICLTDPKDMAFGCGHQ-------TCCGCGQDL--------DLCPICRSFI 326 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~l~CgH~-------fC~~C~~~~--------~~CP~CR~~i 326 (333)
+++..|-||+... -+=.|||. ||..|.-+. +.|-.||...
T Consensus 63 ~ddatC~IC~KTK--FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHKTK--FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhhcc--cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 5778999998421 11157776 455666432 3688887643
No 138
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=59.95 E-value=1.8 Score=32.92 Aligned_cols=38 Identities=29% Similarity=0.786 Sum_probs=17.1
Q ss_pred CCeecccccCCccceeCCCCccchhhhhcC---CCCCCcccccc
Q 019939 287 NHVCPICLTDPKDMAFGCGHQTCCGCGQDL---DLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~l~CgH~fC~~C~~~~---~~CP~CR~~i~ 327 (333)
+..||.|........ +|..|..|.... ..||-|.++++
T Consensus 1 e~~CP~C~~~L~~~~---~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG---GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEET---TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEeC---CEEECccccccceecccCCCcccHHH
Confidence 357888887644422 566666666543 25666666554
No 139
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.62 E-value=3.9 Score=40.78 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=31.5
Q ss_pred CCCeecccccCCcc----ceeCCCCccchhhhhcC-------CCCCCccccc
Q 019939 286 DNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL-------DLCPICRSFI 326 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~-------~~CP~CR~~i 326 (333)
.-..|||=.+.-.+ +.+.|||..|.+-+.++ .+||.|-...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 45789997776554 67799999999988765 3799996544
No 140
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=56.51 E-value=17 Score=39.78 Aligned_cols=44 Identities=27% Similarity=0.503 Sum_probs=32.6
Q ss_pred CCCCeecccccCCcc--cee---CCCCccchhhhhcC-----------CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD--MAF---GCGHQTCCGCGQDL-----------DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~--~~l---~CgH~fC~~C~~~~-----------~~CP~CR~~i~~ 328 (333)
.+..+|.||++..+. -+. .|-|.|-..||.++ +.||.|+...+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~ 248 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKT 248 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhcc
Confidence 345899999998766 334 57799988999643 689999865443
No 141
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=54.70 E-value=38 Score=35.46 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=55.2
Q ss_pred eeecCCCChHHHHHHHHHHHHhcCCceEEEEEEecCccccCC-CcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC
Q 019939 89 LRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSV-DTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 167 (333)
Q Consensus 89 v~l~gpt~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~-~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~ 167 (333)
+++.--|--...|+++.+..-+.+++=-+|+++|||...|-. ++.+. -...|.+|+.+|-+.-|+++-|=|-...
T Consensus 527 LePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~----gIeDTr~AV~eaRk~Gi~VF~Vtld~ea 602 (637)
T COG4548 527 LEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRF----GIEDTREAVIEARKSGIEVFNVTLDREA 602 (637)
T ss_pred cCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccccccccccc----chhhHHHHHHHHHhcCceEEEEEecchh
Confidence 444455677788888887754433444578999999998722 11121 2478999999999999999988777655
Q ss_pred CCccc
Q 019939 168 WDMMR 172 (333)
Q Consensus 168 f~~m~ 172 (333)
-+.+-
T Consensus 603 ~~y~p 607 (637)
T COG4548 603 ISYLP 607 (637)
T ss_pred hhhhH
Confidence 44443
No 142
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.11 E-value=1.1e+02 Score=34.97 Aligned_cols=131 Identities=13% Similarity=0.240 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHH
Q 019939 26 PYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAI 105 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~ 105 (333)
.+.-|-..+..+|.-+-+|..+-+..|+........||. +.-+++=-.-.+..++.+..+..-|-++|.-+.+.|.
T Consensus 242 ~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~----~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF 317 (1104)
T KOG2353|consen 242 RLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFN----GTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAF 317 (1104)
T ss_pred hhHHHHHHHHHHHHhcccCCeEEEEeeccccCccccccc----CceeecchHHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 455566677788888889999999999876655555532 2333433444556666777777789999999999998
Q ss_pred HHHHhc---------CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhc-CCCeEEEEEecccCCCCccc
Q 019939 106 TIVEHS---------GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKAS-EYPLSIILVGVGDGPWDMMR 172 (333)
Q Consensus 106 ~~~~~~---------~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS-~~PlSii~VGvGd~~f~~m~ 172 (333)
+.-... +.-+.+.++||||...+ .++..+.-..-. ..=+|=..||-+..+|+.++
T Consensus 318 ~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 318 SLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHHhccccccccccccceeeEEeecCCccc------------HHHHHHhhccCCCceEEEEEEecccccccccch
Confidence 775321 11367889999998765 444444443321 12345566666666666544
No 143
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=52.03 E-value=9.4 Score=26.81 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=17.0
Q ss_pred CeecccccCCcc-cee-CCCCccchhhh--------hcCCCCCCcccc
Q 019939 288 HVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSF 325 (333)
Q Consensus 288 ~~C~ICl~~~~~-~~l-~CgH~fC~~C~--------~~~~~CP~CR~~ 325 (333)
..|++....... +-- .|.|.-|.+=. .....||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 578888887777 333 89999766322 133589999864
No 144
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=48.11 E-value=13 Score=36.33 Aligned_cols=43 Identities=33% Similarity=0.763 Sum_probs=31.5
Q ss_pred CCeecccccCCc--c-cee--CCCCccchhhhhcC----CCCCCcccccccc
Q 019939 287 NHVCPICLTDPK--D-MAF--GCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 287 ~~~C~ICl~~~~--~-~~l--~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
...|++|.+... + ..+ +||+..|..|.... -.||.||.+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 357888888552 2 334 78999999998755 3899999877653
No 145
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=48.00 E-value=77 Score=32.01 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=43.0
Q ss_pred CCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 86 VPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 86 ~~~v~l~gpt~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
+..|++.. -++..+.+++.....+.|-.. +.+|++||..+ +.+++.+.. ...+ +..-|||.
T Consensus 264 ~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l~~-~g~~--~d~FGvGT 324 (405)
T COG1488 264 LDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALLRA-FGAR--NDAFGVGT 324 (405)
T ss_pred ceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHHHH-hCCC--ccEeccch
Confidence 44455544 677778888888888776555 88999999864 455555555 5666 77788886
No 146
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=47.53 E-value=13 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.667 Sum_probs=28.3
Q ss_pred CCeecccccCCcc-cee---CCCCccchhhhh----cCCCCCCcc
Q 019939 287 NHVCPICLTDPKD-MAF---GCGHQTCCGCGQ----DLDLCPICR 323 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~l---~CgH~fC~~C~~----~~~~CP~CR 323 (333)
...|-.|.+.... ..+ .|.+.||.+|-. .+..||.|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 3459999776665 333 799999999974 567999996
No 147
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=45.62 E-value=76 Score=29.58 Aligned_cols=121 Identities=17% Similarity=0.432 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMA 104 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~ 104 (333)
|+|++++++|-..+-+...|...-..|=|+....... ..=++.++..|+= ..+.+. -+.=-|-+..+
T Consensus 118 ~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~----------YacLd~~~~~~~f--~~v~v~-~ve~yP~~d~v 184 (265)
T COG4822 118 NDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAA----------YACLDHVLDEYGF--DNVFVA-AVEGYPLVDTV 184 (265)
T ss_pred hhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHH----------HHHHHHHHHhcCC--CceEEE-EecCCCcHHHH
Confidence 9999999999999999998888777787775432110 0123333333321 112111 11112455777
Q ss_pred HHHHHhcCC-ceEEE-EEEecCc--cccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 105 ITIVEHSGG-QYHVL-VIIADGQ--VTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 105 ~~~~~~~~~-~y~vL-lIiTDG~--i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
++..++++- .-++. +.++-|. +.| +-+|-+.+++.|-++..++.-...=|+|.-
T Consensus 185 i~~l~~~~~~~v~L~PlMlvAG~Ha~nD--------Masddedswk~il~~~G~~v~~~l~GLGE~ 242 (265)
T COG4822 185 IEYLRKNGIKEVHLIPLMLVAGDHAKND--------MASDDEDSWKNILEKNGFKVEVYLHGLGEN 242 (265)
T ss_pred HHHHHHcCCceEEEeeeEEeechhhhhh--------hcccchHHHHHHHHhCCceeEEEeecCCCc
Confidence 777776542 23433 5666674 333 222334899999999999999999999964
No 148
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=9.5 Score=38.18 Aligned_cols=30 Identities=33% Similarity=0.905 Sum_probs=21.7
Q ss_pred CCCeecccc-cCCcc----ceeCCCCccchhhhhc
Q 019939 286 DNHVCPICL-TDPKD----MAFGCGHQTCCGCGQD 315 (333)
Q Consensus 286 ~~~~C~ICl-~~~~~----~~l~CgH~fC~~C~~~ 315 (333)
...+|.||. +.... .+..|+|.||.+|..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~ 179 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQ 179 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHH
Confidence 356899999 44333 2337999999999963
No 149
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=45.12 E-value=5.8 Score=39.63 Aligned_cols=39 Identities=31% Similarity=0.634 Sum_probs=29.9
Q ss_pred CCCeecccccCC--cc---ceeCCCCccchhhhhc------CCCCCCccc
Q 019939 286 DNHVCPICLTDP--KD---MAFGCGHQTCCGCGQD------LDLCPICRS 324 (333)
Q Consensus 286 ~~~~C~ICl~~~--~~---~~l~CgH~fC~~C~~~------~~~CP~CR~ 324 (333)
.+.-|-.|-+.. ++ -.+||.|.|--.|+.. .+.||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 347899998865 33 3569999999999962 369999994
No 150
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.10 E-value=15 Score=28.50 Aligned_cols=43 Identities=26% Similarity=0.699 Sum_probs=17.4
Q ss_pred CCCeecccccCCcc----cee----CCCCccchhhhh-----cCCCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD----MAF----GCGHQTCCGCGQ-----DLDLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~~l----~CgH~fC~~C~~-----~~~~CP~CR~~i~~ 328 (333)
....|.||-+..-- -+| .|+--.|+.|.+ ..+.||.|+.+.+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 34689999886522 122 678889999985 45799999987653
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.90 E-value=67 Score=30.78 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHhCCceeec-CCCCh-----HHHHHHHHHHHHhcC--CceEEEEEEecCccccCCCcccCcCch-hHH
Q 019939 72 CNGFEEVLRRYRELVPHLRLA-GPTSF-----APIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSS-QEK 142 (333)
Q Consensus 72 ~~G~~gvl~~Y~~~~~~v~l~-gpt~f-----apvI~~~~~~~~~~~--~~y~vLlIiTDG~i~d~~~~~~~~~~~-~~~ 142 (333)
-.|+..++..-++..+.+.+. -|+.+ +.=|-.+++.+.+.+ ..|= ++||+-|+-.- .+|-. |.+
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~D-viii~RGGGs~------eDL~~FN~e 97 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFD-VIIIIRGGGSI------EDLWAFNDE 97 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcccccccc-EEEEecCCCCh------HHhcccChH
Confidence 346666666666655554432 34433 444555555554432 1233 45555554321 11222 345
Q ss_pred HHHHHHHHhcCCCeEEEEEeccc
Q 019939 143 KTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 143 ~t~~aI~~AS~~PlSii~VGvGd 165 (333)
+..++|. ++..| ||.|||-
T Consensus 98 ~varai~-~~~~P---visaIGH 116 (319)
T PF02601_consen 98 EVARAIA-ASPIP---VISAIGH 116 (319)
T ss_pred HHHHHHH-hCCCC---EEEecCC
Confidence 5555555 33566 6778874
No 152
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=42.38 E-value=6 Score=37.81 Aligned_cols=40 Identities=30% Similarity=0.616 Sum_probs=29.4
Q ss_pred ecccccCCcc-----ceeCCCCccchhhhhcC----CCCCCccccccccc
Q 019939 290 CPICLTDPKD-----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTRI 330 (333)
Q Consensus 290 C~ICl~~~~~-----~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~i 330 (333)
||||.+..-. ..++|||..-..|.+.+ -.||+|.. +..+.
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHH
Confidence 9999997644 23599999777777643 58999988 54443
No 153
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=42.06 E-value=2.5e+02 Score=25.01 Aligned_cols=140 Identities=12% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCccccCC-CCCHHHHHHHHHHhhhhc---cCCCCccceEEeCCCCCCC-------CcccccCCCCCCCCCHHHHHHHHH
Q 019939 15 RSLHHIGD-DQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHD-------QEVFSFYPDEKFCNGFEEVLRRYR 83 (333)
Q Consensus 15 ~sLH~~~~-~~N~Y~~ai~~i~~vl~~---yD~d~~ip~~GFG~~~~~~-------~~vf~~~~~~~~~~G~~gvl~~Y~ 83 (333)
.|+|-..+ ...+.+.|++.+-.+++. ..+.-.+-++.||...+.. .+++.+.+-+ .-+++.+.+. .
T Consensus 10 ~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~--~~~~~~l~~L-~ 86 (224)
T PF03731_consen 10 PSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLD--PPSAERLKEL-E 86 (224)
T ss_dssp CGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC----BHHHHHHH-H
T ss_pred HHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCC--ccCHHHHHHH-H
Confidence 34554332 223788888888876653 3334579999999876543 3444443222 1133322221 1
Q ss_pred HhCCc-------eeecCCCChHHHHHHHHHHHHh--cCCce--EEEEEEecCccccCCCcccCcCchhHHHHHHH--HHH
Q 019939 84 ELVPH-------LRLAGPTSFAPIIEMAITIVEH--SGGQY--HVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA--IVK 150 (333)
Q Consensus 84 ~~~~~-------v~l~gpt~fapvI~~~~~~~~~--~~~~y--~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~a--I~~ 150 (333)
+.+.. ..-....++..++-.+..+.++ ...++ --+++|||++--. + =.++.+.+++. ..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~------~-~~~~~~~~~~~l~~~D 159 (224)
T PF03731_consen 87 ELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH------E-DDDELERIIQKLKAKD 159 (224)
T ss_dssp TTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT------T--CCCHHHHHHHHHHHH
T ss_pred HhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC------C-CHHHHHHHHHhhcccc
Confidence 11110 0112445777777777776653 22232 3468899885321 1 12246666666 666
Q ss_pred hcCCCeEEEEEecc
Q 019939 151 ASEYPLSIILVGVG 164 (333)
Q Consensus 151 AS~~PlSii~VGvG 164 (333)
....-+.+.++.+.
T Consensus 160 l~~~~i~~~~~~l~ 173 (224)
T PF03731_consen 160 LQDNGIEIELFFLP 173 (224)
T ss_dssp HHHHTEEEEEEECT
T ss_pred chhcCcceeEeecC
Confidence 66777777777773
No 154
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=41.32 E-value=19 Score=35.11 Aligned_cols=44 Identities=7% Similarity=-0.081 Sum_probs=31.6
Q ss_pred CeecccccCCcccee-CCCCc-cchhhhhcC--CCCCCcccccccccc
Q 019939 288 HVCPICLTDPKDMAF-GCGHQ-TCCGCGQDL--DLCPICRSFIQTRIK 331 (333)
Q Consensus 288 ~~C~ICl~~~~~~~l-~CgH~-fC~~C~~~~--~~CP~CR~~i~~~i~ 331 (333)
.+|-+|-.......+ +|+|+ ||.+|+.-. ..||.|-......++
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~ 391 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVP 391 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeee
Confidence 689999876666444 99998 777999743 489999765444333
No 155
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=41.13 E-value=53 Score=35.96 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHhhhhc
Q 019939 23 DQNPYEQAISIIGKTLSS 40 (333)
Q Consensus 23 ~~N~Y~~ai~~i~~vl~~ 40 (333)
..|-||+++++|..+++.
T Consensus 266 ee~~~ekvl~aiT~~ae~ 283 (1102)
T KOG1924|consen 266 EENGLEKVLEAITTIAEA 283 (1102)
T ss_pred hhhHHHHHHHHHHHHHhh
Confidence 468888888888888777
No 156
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=38.20 E-value=49 Score=26.39 Aligned_cols=38 Identities=26% Similarity=0.590 Sum_probs=29.6
Q ss_pred CCCeecccccCCccceeCCCCccchhhhhcCCCCCCcccccc
Q 019939 286 DNHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l~CgH~fC~~C~~~~~~CP~CR~~i~ 327 (333)
....|.+|-.... .=||.+|..|+-+.-.|.+|-..|.
T Consensus 43 ~~~~C~~CK~~v~----q~g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 43 YSSKCKICKTKVH----QPGAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred cCccccccccccc----cCCCccChhhhcccCcccccCCeec
Confidence 3568999985221 3488999999988889999988874
No 157
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=38.02 E-value=71 Score=29.66 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCC---eEEEEEecc
Q 019939 99 PIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP---LSIILVGVG 164 (333)
Q Consensus 99 pvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~P---lSii~VGvG 164 (333)
|++.++++.++++++.-|++=.++||+|.- ..+.....|.-|.+.- +.|=.+.=|
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHS-----------h~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHS-----------HIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccc-----------cHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 788888888888877889888999999974 2455555555555543 444444434
No 158
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=38.00 E-value=24 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCCCeecccccCCccceeCCCCc-----cchhhhhcC------CCCCCcccccc
Q 019939 285 SDNHVCPICLTDPKDMAFGCGHQ-----TCCGCGQDL------DLCPICRSFIQ 327 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~l~CgH~-----fC~~C~~~~------~~CP~CR~~i~ 327 (333)
..+..|-||.+...+...||... .-.+|++++ ..|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45679999998865433466543 244888643 48999998764
No 159
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.17 E-value=15 Score=40.37 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCCCCeecccccCCcc---ceeCCCCccchhhhh
Q 019939 284 TSDNHVCPICLTDPKD---MAFGCGHQTCCGCGQ 314 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~---~~l~CgH~fC~~C~~ 314 (333)
.+-+..|-+|.-..-. .+++|||.|-+.|+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLI 847 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHH
Confidence 3456789999876644 677999999999984
No 160
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.13 E-value=30 Score=33.86 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=33.0
Q ss_pred cCCCChHHHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 92 AGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 92 ~gpt~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
+|.|.|+||++..-+. ... -+|+.+|||--+- . ..+-..|+=||+-|-|.
T Consensus 325 gG~Tdf~Pvfeylek~----~~~-~~lIyfTDG~gd~-------------p------~~~r~~~~lwVl~~~~~ 374 (396)
T COG3864 325 GGGTDFSPVFEYLEKN----RME-CFLIYFTDGMGDQ-------------P------LVFRPKVLLWVLTGAKG 374 (396)
T ss_pred CCCccccHHHHHHHhh----ccc-ceEEEEccCCCCc-------------c------cccCCcceEEEecCCcc
Confidence 4679999999866332 111 4789999997542 0 11334578899888664
No 161
>PRK08105 flavodoxin; Provisional
Probab=35.02 E-value=78 Score=27.01 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=24.6
Q ss_pred cCchhHHHHHHHHHHh--cCCCeEEEEEecccCCCCc
Q 019939 136 QLSSQEKKTVEAIVKA--SEYPLSIILVGVGDGPWDM 170 (333)
Q Consensus 136 ~~~~~~~~t~~aI~~A--S~~PlSii~VGvGd~~f~~ 170 (333)
+++.+..+..+.|.+. --.-+.+-+.|+||..|..
T Consensus 63 e~p~~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y~~ 99 (149)
T PRK08105 63 DLPDSIVPLFQALKDTAGYQPNLRYGVIALGDSSYDN 99 (149)
T ss_pred CCChhHHHHHHHHHhcCcccCCCEEEEEeeecCCHHH
Confidence 3444688888888864 1223789999999988644
No 162
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.17 E-value=13 Score=35.94 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCccccC---CCCCHHHHHHHHHHhhhhccCCCCccceEEeCCC
Q 019939 5 VGPCARSFQRRSLHHIG---DDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDA 55 (333)
Q Consensus 5 ~~~~~~~~~~~sLH~~~---~~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~ 55 (333)
|+.|+-+|+=--||..- -.+|+++++=-.|-.++..+=-...-+..||-++
T Consensus 1 mdt~E~tf~L~Yl~~~~~~VfpPeEf~~lGlTl~~Lft~~lgse~~dFV~yh~R 54 (381)
T KOG3899|consen 1 MDTCEFTFQLTYLHVVFALVFPPEEFLDLGLTLFDLFTILLGSEQHDFVEYHAR 54 (381)
T ss_pred CCccchhhhhhhhheeeEEEeChHHHHHhcccHHHHHHHHhCcchhhhhHHHHH
Confidence 35566666433333321 1467777654444455554444445555666554
No 163
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.12 E-value=25 Score=33.21 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=26.7
Q ss_pred CCCCCCeecccccCCcc-ceeCCCCccchhhhh
Q 019939 283 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQ 314 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~ 314 (333)
+..+...|+.|+....+ ++.+=||.||++||-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaIL 71 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAIL 71 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHH
Confidence 34566899999999999 555999999999983
No 164
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.82 E-value=1.1e+02 Score=30.87 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEE--EecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccCC
Q 019939 99 PIIEMAITIVEHSGGQYHVLVI--IADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 176 (333)
Q Consensus 99 pvI~~~~~~~~~~~~~y~vLlI--iTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld~ 176 (333)
-+|+.+.+.++.......|.++ ..-|.-. ..+.++||..+....+-+||||-|+|.++.|--||+
T Consensus 147 Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A-------------~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 147 AAIRDILTVLRRRFPLVEVIIYPTLVQGEGA-------------AASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCcCcCccH-------------HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 5577777776654322333333 2344433 578899998888766789999999999999998886
Q ss_pred C
Q 019939 177 N 177 (333)
Q Consensus 177 ~ 177 (333)
.
T Consensus 214 e 214 (438)
T PRK00286 214 E 214 (438)
T ss_pred H
Confidence 3
No 165
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.33 E-value=29 Score=32.85 Aligned_cols=44 Identities=18% Similarity=0.461 Sum_probs=32.1
Q ss_pred CCCCeecccccCCcc----cee-CCCCccchhhhhcC--CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDL--DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~----~~l-~CgH~fC~~C~~~~--~~CP~CR~~i~~ 328 (333)
+....|+|---.+.. +++ +|||.|-..-+... ..|++|.+.++.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 346789987554433 444 99999988777655 589999998864
No 166
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=31.29 E-value=42 Score=32.76 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.2
Q ss_pred CCCCeecccccCCccce-eCCCCc-cchhhhh-----cCCCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQ-----DLDLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~-l~CgH~-fC~~C~~-----~~~~CP~CR~~i~~~ 329 (333)
.....|.+|++...-++ .+|+|. ||-.|.. +...|++|...+...
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra 185 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRA 185 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhh
Confidence 45578999998776644 499998 7777764 445799997655543
No 167
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.21 E-value=21 Score=37.93 Aligned_cols=24 Identities=38% Similarity=0.901 Sum_probs=19.5
Q ss_pred ceeCCCCccchhhhhcC--CCCCCccc
Q 019939 300 MAFGCGHQTCCGCGQDL--DLCPICRS 324 (333)
Q Consensus 300 ~~l~CgH~fC~~C~~~~--~~CP~CR~ 324 (333)
+.+.|||..|..|++.+ ..|| |..
T Consensus 29 vsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 29 VSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred ccccccchHHHHHHHhHhhccCC-CCc
Confidence 56689999999999977 4788 543
No 168
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.06 E-value=16 Score=36.59 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=15.2
Q ss_pred hhhhccCCCCccceEEeCCCC
Q 019939 36 KTLSSFDEDNLIPCFGFGDAS 56 (333)
Q Consensus 36 ~vl~~yD~d~~ip~~GFG~~~ 56 (333)
.|+-.|-.|..-++|=.|-.+
T Consensus 84 ~VvVEY~~D~~tDMFQIGRSt 104 (416)
T PF04710_consen 84 TVVVEYTHDPDTDMFQIGRST 104 (416)
T ss_dssp EEEEEEEEETTEEEEEEES--
T ss_pred eeeeeeecCCCcchhhhccCC
Confidence 467778888888888888654
No 169
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.39 E-value=38 Score=27.58 Aligned_cols=38 Identities=29% Similarity=0.677 Sum_probs=23.3
Q ss_pred CCeecccccCCcccee---------CC---CCccchhhhh-------------cCCCCCCccc
Q 019939 287 NHVCPICLTDPKDMAF---------GC---GHQTCCGCGQ-------------DLDLCPICRS 324 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~l---------~C---gH~fC~~C~~-------------~~~~CP~CR~ 324 (333)
...|-.|.....+... .| .-.||..|+. ..+.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3456666665554222 33 4559999973 1247999986
No 170
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.39 E-value=26 Score=21.32 Aligned_cols=20 Identities=30% Similarity=0.770 Sum_probs=9.9
Q ss_pred eecccccCCcc-cee--CCCCcc
Q 019939 289 VCPICLTDPKD-MAF--GCGHQT 308 (333)
Q Consensus 289 ~C~ICl~~~~~-~~l--~CgH~f 308 (333)
.||-|...... ... .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 46666555444 223 366654
No 171
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.31 E-value=45 Score=27.65 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=25.9
Q ss_pred CeecccccCCccc------------ee---CCCCccchhhhh----cCCCCCCcc
Q 019939 288 HVCPICLTDPKDM------------AF---GCGHQTCCGCGQ----DLDLCPICR 323 (333)
Q Consensus 288 ~~C~ICl~~~~~~------------~l---~CgH~fC~~C~~----~~~~CP~CR 323 (333)
..|--|+..+... .+ .|.+.||.+|-. .+.+||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588887755431 12 689999999974 567999996
No 172
>PLN02436 cellulose synthase A
Probab=29.69 E-value=37 Score=38.32 Aligned_cols=41 Identities=27% Similarity=0.711 Sum_probs=30.2
Q ss_pred CCeecccccCC---cc-cee----CCCCccchhhhh-----cCCCCCCcccccc
Q 019939 287 NHVCPICLTDP---KD-MAF----GCGHQTCCGCGQ-----DLDLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~---~~-~~l----~CgH~fC~~C~~-----~~~~CP~CR~~i~ 327 (333)
...|.||-|.. .+ -.| .|+--.|+.|.+ ..+.||.|+...+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 35999999974 22 122 578889999996 2358999998765
No 173
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=1.3e+02 Score=27.37 Aligned_cols=72 Identities=14% Similarity=0.348 Sum_probs=51.4
Q ss_pred HhCCceeecCCCChHHHHHHHHHHHHh--c-CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEE
Q 019939 84 ELVPHLRLAGPTSFAPIIEMAITIVEH--S-GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIIL 160 (333)
Q Consensus 84 ~~~~~v~l~gpt~fapvI~~~~~~~~~--~-~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~ 160 (333)
..+..+++.|...+..-|..+.-+.++ + +++-.++.|+. ..|.+ ++++.++.+..--+.-+.|-|
T Consensus 74 t~lhd~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvg-Spi~e-----------sedeLirlak~lkknnVAidi 141 (243)
T COG5148 74 TFLHDIRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVG-SPIQE-----------SEDELIRLAKQLKKNNVAIDI 141 (243)
T ss_pred HHhccccccCcchHHHHHHHHHHHHhcccCCccceEEEEEec-Ccccc-----------cHHHHHHHHHHHHhcCeeEEE
Confidence 355678899999999999877666553 2 33345555554 44444 378888888888888888888
Q ss_pred EecccCC
Q 019939 161 VGVGDGP 167 (333)
Q Consensus 161 VGvGd~~ 167 (333)
|-+|...
T Consensus 142 i~fGE~~ 148 (243)
T COG5148 142 IFFGEAA 148 (243)
T ss_pred Eehhhhh
Confidence 8888644
No 174
>PRK09004 FMN-binding protein MioC; Provisional
Probab=29.04 E-value=1.2e+02 Score=25.87 Aligned_cols=31 Identities=13% Similarity=0.365 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhc-CC-CeEEEEEecccCCCCc
Q 019939 140 QEKKTVEAIVKAS-EY-PLSIILVGVGDGPWDM 170 (333)
Q Consensus 140 ~~~~t~~aI~~AS-~~-PlSii~VGvGd~~f~~ 170 (333)
+.+...+.|.+.+ .+ -+.+-+.|+||..|+.
T Consensus 65 ~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y~~ 97 (146)
T PRK09004 65 NLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDT 97 (146)
T ss_pred hHHHHHHHHHhcCCCCCCCEEEEEeecCCCHHH
Confidence 5777888787642 22 3679999999987643
No 175
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.95 E-value=18 Score=26.47 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=16.1
Q ss_pred CCCCeecccccCCccce---e--CCCCccchhhhh
Q 019939 285 SDNHVCPICLTDPKDMA---F--GCGHQTCCGCGQ 314 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~---l--~CgH~fC~~C~~ 314 (333)
.+...|.+|...|.-.. - .||+.||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 34578999999885421 1 799999999985
No 176
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.92 E-value=14 Score=23.27 Aligned_cols=20 Identities=35% Similarity=0.919 Sum_probs=11.8
Q ss_pred CCccchhhhhcC--------CCCCCccc
Q 019939 305 GHQTCCGCGQDL--------DLCPICRS 324 (333)
Q Consensus 305 gH~fC~~C~~~~--------~~CP~CR~ 324 (333)
.|.||..|...+ +.||.|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 378999998643 37888865
No 177
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.91 E-value=20 Score=30.37 Aligned_cols=23 Identities=35% Similarity=0.950 Sum_probs=15.9
Q ss_pred ccchhhhhc-CCCCCCcccccccc
Q 019939 307 QTCCGCGQD-LDLCPICRSFIQTR 329 (333)
Q Consensus 307 ~fC~~C~~~-~~~CP~CR~~i~~~ 329 (333)
.||..|... ...||+|..+|...
T Consensus 29 afcskcgeati~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHhcCCccCCccccc
Confidence 467777753 45888888877653
No 178
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.58 E-value=17 Score=31.87 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=19.5
Q ss_pred CccchhhhhcC-CCCCCcccccccc
Q 019939 306 HQTCCGCGQDL-DLCPICRSFIQTR 329 (333)
Q Consensus 306 H~fC~~C~~~~-~~CP~CR~~i~~~ 329 (333)
+.||..|..+. ..||.|..+|...
T Consensus 28 ~~fC~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 28 EKFCSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHhhHHHHHHCcCCCCCCCCc
Confidence 56899998765 6899999998764
No 179
>PLN02189 cellulose synthase
Probab=28.52 E-value=39 Score=38.00 Aligned_cols=41 Identities=32% Similarity=0.783 Sum_probs=30.2
Q ss_pred CCeecccccCCc---c--c--ee-CCCCccchhhhh-----cCCCCCCcccccc
Q 019939 287 NHVCPICLTDPK---D--M--AF-GCGHQTCCGCGQ-----DLDLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~---~--~--~l-~CgH~fC~~C~~-----~~~~CP~CR~~i~ 327 (333)
...|.||-|... + . +- .|+--.|+.|.+ ..+.||.|+...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 359999999743 2 2 22 577889999996 3358999998765
No 180
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=28.40 E-value=59 Score=30.42 Aligned_cols=34 Identities=38% Similarity=0.668 Sum_probs=29.7
Q ss_pred cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeE
Q 019939 111 SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLS 157 (333)
Q Consensus 111 ~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlS 157 (333)
.+.+|+|-+|+-||+.. +-++.+|+..|+++-|.
T Consensus 138 ~~~~~~VyvilGDGEl~-------------EG~~WEAam~Aah~~L~ 171 (243)
T COG3959 138 KGSPYRVYVILGDGELD-------------EGQVWEAAMTAAHYKLD 171 (243)
T ss_pred cCCCceEEEEecCcccc-------------cccHHHHHHHHHHhccC
Confidence 45679999999999986 67999999999988776
No 181
>PLN02400 cellulose synthase
Probab=28.09 E-value=38 Score=38.30 Aligned_cols=41 Identities=27% Similarity=0.720 Sum_probs=30.2
Q ss_pred CCeecccccCCc---c----cee-CCCCccchhhhh-----cCCCCCCcccccc
Q 019939 287 NHVCPICLTDPK---D----MAF-GCGHQTCCGCGQ-----DLDLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~---~----~~l-~CgH~fC~~C~~-----~~~~CP~CR~~i~ 327 (333)
...|.||-|..- + |+- .|+--.|+.|.+ ..+.||.|+...+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 359999998642 2 222 678889999995 3368999998765
No 182
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=27.75 E-value=1.9e+02 Score=28.10 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=9.8
Q ss_pred eecCCCChHHHHHHHHHHHHh
Q 019939 90 RLAGPTSFAPIIEMAITIVEH 110 (333)
Q Consensus 90 ~l~gpt~fapvI~~~~~~~~~ 110 (333)
-+.|++.+....+++.+..++
T Consensus 27 iv~~~~~~~~~~~~v~~~l~~ 47 (349)
T cd08550 27 VVGGKTVLKKSRPRFEAALAK 47 (349)
T ss_pred EEEChHHHHHHHHHHHHHHHh
Confidence 344555554444444444443
No 183
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.27 E-value=60 Score=36.74 Aligned_cols=41 Identities=29% Similarity=0.701 Sum_probs=30.2
Q ss_pred CCeecccccCCc---c----cee-CCCCccchhhhh-----cCCCCCCcccccc
Q 019939 287 NHVCPICLTDPK---D----MAF-GCGHQTCCGCGQ-----DLDLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~---~----~~l-~CgH~fC~~C~~-----~~~~CP~CR~~i~ 327 (333)
...|.||-|..- + |+- .|+--.|+.|.+ ..+.||.|+...+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 459999998642 2 222 678889999995 3468999998765
No 184
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=25.92 E-value=31 Score=33.12 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=18.5
Q ss_pred CCCCccchhhhhcC--------CCCCCccccc
Q 019939 303 GCGHQTCCGCGQDL--------DLCPICRSFI 326 (333)
Q Consensus 303 ~CgH~fC~~C~~~~--------~~CP~CR~~i 326 (333)
.=.|.||..|..++ ..||.|+...
T Consensus 108 ~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 108 YRSHRFCGRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HhhCcCCCCCCCcCccccCceeeeCCCCCCcc
Confidence 45788999998765 3799998754
No 185
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=25.92 E-value=86 Score=32.09 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHHHHHhcCCceEEEEEEecCccccC
Q 019939 94 PTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRS 129 (333)
Q Consensus 94 pt~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~ 129 (333)
.||.+..+.-+-++.+...+.-.++||||||..+..
T Consensus 532 gTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAh 567 (652)
T COG4867 532 GTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAH 567 (652)
T ss_pred ccchHHHHHHHHHHHHhCcccCceEEEEeCCCcccc
Confidence 478888888888877766555568999999998853
No 186
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=25.70 E-value=3.6e+02 Score=24.13 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=26.7
Q ss_pred CceeecC--CCChHHHHHHHHHHHHhcCCceEEEEEEecCccc
Q 019939 87 PHLRLAG--PTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVT 127 (333)
Q Consensus 87 ~~v~l~g--pt~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~ 127 (333)
..|.++| |+...+.+.++++.+++.+. -+.|.|.|-..
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~---~~~i~TNG~~~ 106 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGI---HTCLDTSGFLG 106 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCC---CEEEEcCCCCC
Confidence 3588875 78878888888888876542 24677999543
No 187
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.28 E-value=45 Score=36.45 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=17.6
Q ss_pred CCCCccchhhhhcC----------CCCCCccccc
Q 019939 303 GCGHQTCCGCGQDL----------DLCPICRSFI 326 (333)
Q Consensus 303 ~CgH~fC~~C~~~~----------~~CP~CR~~i 326 (333)
.|+|.+|..|+... ..|+.|..-|
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 59999999999633 3577776544
No 188
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=25.11 E-value=2.8e+02 Score=25.96 Aligned_cols=97 Identities=18% Similarity=0.347 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHhCCceee-cCCCChHHHHHHH-----HHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHH
Q 019939 71 FCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMA-----ITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 144 (333)
Q Consensus 71 ~~~G~~gvl~~Y~~~~~~v~l-~gpt~fapvI~~~-----~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t 144 (333)
...-+++++++.-..-..+-+ .|+.+|.|+++.. .+..++.+..-.+..+||-|+- ..+|
T Consensus 66 ~~r~fD~Lve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~~--------------~~dt 131 (241)
T PRK13886 66 NTRNFDALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQA--------------LLDT 131 (241)
T ss_pred chhhHHHHHHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCcc--------------cHHH
Confidence 345678888776533233334 5999999998864 4555666555555667776652 3466
Q ss_pred HHHHHH-hcCCC--eEEEE-E--------ecccCCCCcccccCCCCCCccc
Q 019939 145 VEAIVK-ASEYP--LSIIL-V--------GVGDGPWDMMREFDDNIPARAF 183 (333)
Q Consensus 145 ~~aI~~-AS~~P--lSii~-V--------GvGd~~f~~m~~ld~~~~~r~~ 183 (333)
++.+.+ ++.+| .-+|+ . +-| .+|+.|+... +...|..
T Consensus 132 l~~~~~l~~~~~~~~~~Vvw~N~~~G~~~~~g-k~fe~~~~y~-~~~~r~~ 180 (241)
T PRK13886 132 VSGFAQLASQFPAECLFVVWLNPYWGPIEHEG-KGFEQMKAYT-ANKDRVS 180 (241)
T ss_pred HHHHHHHHHHcCCCceEEEEecCccCcccccC-CCHHHhHhhH-HHHHhhe
Confidence 666644 34455 33333 1 233 3677777665 3344433
No 189
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.03 E-value=30 Score=32.25 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCCeecccccCCcc---ceeCCCCccchhhhhcC------------CCCCCcccccc
Q 019939 286 DNHVCPICLTDPKD---MAFGCGHQTCCGCGQDL------------DLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~---~~l~CgH~fC~~C~~~~------------~~CP~CR~~i~ 327 (333)
...-|..|-..... +-+-|-|.|-.+|+... -.||.|.++|-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 34567777765544 45699999999998532 27999998774
No 190
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.78 E-value=4.9e+02 Score=22.98 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=31.6
Q ss_pred ceeecCCCChHHHHHHHHHHHHhcCCceEEE-EEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 88 HLRLAGPTSFAPIIEMAITIVEHSGGQYHVL-VIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 88 ~v~l~gpt~fapvI~~~~~~~~~~~~~y~vL-lIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
.+-|-|.+. .+++++.+..++. |.-+ +.-.+|-.++ ++.++.++.|.++. =.|++||+|.
T Consensus 50 ~vfllG~~~--~v~~~~~~~l~~~---yP~l~i~g~~g~f~~----------~~~~~i~~~I~~s~---~dil~VglG~ 110 (177)
T TIGR00696 50 PIFLYGGKP--DVLQQLKVKLIKE---YPKLKIVGAFGPLEP----------EERKAALAKIARSG---AGIVFVGLGC 110 (177)
T ss_pred eEEEECCCH--HHHHHHHHHHHHH---CCCCEEEEECCCCCh----------HHHHHHHHHHHHcC---CCEEEEEcCC
Confidence 444555553 3566666665543 2222 1122666543 23455566666532 4588899886
No 191
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.75 E-value=1.8e+02 Score=29.43 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEE--EEecCccccCCCcccCcCchhHHHHHHHHHHhcCCC-eEEEEEecccCCCCccccc
Q 019939 98 APIIEMAITIVEHSGGQYHVLV--IIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP-LSIILVGVGDGPWDMMREF 174 (333)
Q Consensus 98 apvI~~~~~~~~~~~~~y~vLl--IiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~P-lSii~VGvGd~~f~~m~~l 174 (333)
+-+|+.++...+.......|.+ ...-|.-. ..+.++||..+...+ +-+||||-|.|.++.|--|
T Consensus 140 ~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a-------------~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 140 GAALADILHILKRRDPSLKVVIYPTLVQGEGA-------------VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred cHHHHHHHHHHHhhCCCceEEEecccccCccH-------------HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 3567777777665422223333 23445433 578888998887655 7899999999999999999
Q ss_pred CCC
Q 019939 175 DDN 177 (333)
Q Consensus 175 d~~ 177 (333)
|++
T Consensus 207 n~e 209 (432)
T TIGR00237 207 NDE 209 (432)
T ss_pred CcH
Confidence 864
No 192
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.62 E-value=36 Score=28.99 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.9
Q ss_pred cccccCCcccee-CCCCccch
Q 019939 291 PICLTDPKDMAF-GCGHQTCC 310 (333)
Q Consensus 291 ~ICl~~~~~~~l-~CgH~fC~ 310 (333)
-||.+..+.++- .|||.||.
T Consensus 61 fi~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred EEEecccccEEEEeccccccC
Confidence 478887777554 99999997
No 193
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=24.19 E-value=3.5e+02 Score=27.20 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHhhhh-ccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 23 DQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 23 ~~N~Y~~ai~~i~~vl~-~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
....|-...-.+...|. .+.. +.+|-||...+...+++. ..+.+..+.+-...+... +|.|-+.+..
T Consensus 230 Sm~~ys~~~L~l~hAl~q~~~R---~~~F~F~TRLt~vT~~l~-------~rD~~~Al~~~~a~v~dw--~ggTrig~tl 297 (395)
T COG3552 230 SMSGYSRIFLHLLHALRQQRSR---VHVFLFGTRLTRVTHMLR-------ERDLEDALRRLSAQVKDW--DGGTRIGNTL 297 (395)
T ss_pred chhhhHHHHHHHHHHHHhcccc---eeEEEeechHHHHHHHhc-------cCCHHHHHHHHHhhcccc--cCCcchhHHH
Confidence 34566666665555443 4443 349999998775444431 346666665555443332 5889988777
Q ss_pred HHHHHHHHhc-CCceEEEEEEecCcccc
Q 019939 102 EMAITIVEHS-GGQYHVLVIIADGQVTR 128 (333)
Q Consensus 102 ~~~~~~~~~~-~~~y~vLlIiTDG~i~d 128 (333)
.+-.+.-..+ -..=.++||+|||--.|
T Consensus 298 ~aF~~~~~~~~L~~gA~VlilsDg~drd 325 (395)
T COG3552 298 AAFLRRWHGNVLSGGAVVLILSDGLDRD 325 (395)
T ss_pred HHHHccccccccCCceEEEEEecccccC
Confidence 6665542221 11225789999995433
No 194
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.10 E-value=19 Score=29.72 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=25.9
Q ss_pred CCeecccccCCcc----ce--eCCCCccchhhhhcC-----CCCCCcccc
Q 019939 287 NHVCPICLTDPKD----MA--FGCGHQTCCGCGQDL-----DLCPICRSF 325 (333)
Q Consensus 287 ~~~C~ICl~~~~~----~~--l~CgH~fC~~C~~~~-----~~CP~CR~~ 325 (333)
+..|..|...+.- -. ..|+|.+|..|.... +.|-+|+..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 4589999875432 22 289999999998643 368888753
No 195
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.81 E-value=40 Score=34.26 Aligned_cols=30 Identities=30% Similarity=0.781 Sum_probs=24.8
Q ss_pred CCCCeecccccCCcc-ce-eCCCCccchhhhh
Q 019939 285 SDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQ 314 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~-l~CgH~fC~~C~~ 314 (333)
.....|-||.+.... .+ +.|||.||..|..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~ 99 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWT 99 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHH
Confidence 356799999999975 43 4999999999985
No 196
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=3.2e+02 Score=22.01 Aligned_cols=64 Identities=17% Similarity=0.376 Sum_probs=44.7
Q ss_pred cCCCChHHHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcc
Q 019939 92 AGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMM 171 (333)
Q Consensus 92 ~gpt~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m 171 (333)
.+|+.....|..+...+-+++.. +|+-+|.+-- =|||=|-|.||+-+
T Consensus 33 e~~~tvgdll~yi~~~~ie~r~~----lFi~~gsvrp-----------------------------Gii~lINd~DWEll 79 (101)
T KOG4146|consen 33 ESPATVGDLLDYIFGKYIETRDS----LFIHHGSVRP-----------------------------GIIVLINDMDWELL 79 (101)
T ss_pred CCcccHHHHHHHHHHHHhcCCcc----eEeeCCcCcC-----------------------------cEEEEEeccchhhh
Confidence 36888888888877644333333 7777877641 15666789999999
Q ss_pred cccCCCCCCcccceeeeee
Q 019939 172 REFDDNIPARAFDNFQFVN 190 (333)
Q Consensus 172 ~~ld~~~~~r~~DnvqFv~ 190 (333)
++.|..+..- |.+-|+.
T Consensus 80 ekedy~ledg--D~ivfiS 96 (101)
T KOG4146|consen 80 EKEDYPLEDG--DHIVFIS 96 (101)
T ss_pred cccccCcccC--CEEEEEE
Confidence 9998665544 7888874
No 197
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.03 E-value=35 Score=33.33 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=29.6
Q ss_pred CCCCeecccccCCcc----ceeCCCCccchhhhhcC-------CCCCCcccc
Q 019939 285 SDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL-------DLCPICRSF 325 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~-------~~CP~CR~~ 325 (333)
..-..|||=.+.-.+ +.+.|||..-.+-+..+ ..||.|-..
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 345789986665443 67799999988777654 379999654
No 198
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.03 E-value=2.1e+02 Score=26.37 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEe
Q 019939 118 LVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVG 162 (333)
Q Consensus 118 LlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VG 162 (333)
..|-.||+|+ .+|+..+++| ..-++++|
T Consensus 172 ~~IeVDGGI~--------------~eti~~l~~a---GaDi~V~G 199 (223)
T PRK08745 172 IRLEIDGGVK--------------ADNIGAIAAA---GADTFVAG 199 (223)
T ss_pred eeEEEECCCC--------------HHHHHHHHHc---CCCEEEEC
Confidence 5788999998 4788777765 34677776
No 199
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=22.80 E-value=93 Score=27.16 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHhcCCCeEEEEEe
Q 019939 138 SSQEKKTVEAIVKASEYPLSIILVG 162 (333)
Q Consensus 138 ~~~~~~t~~aI~~AS~~PlSii~VG 162 (333)
|+.|++.++.|..++..|..|.|.|
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~G 29 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITG 29 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 5669999999999999999999998
No 200
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=22.78 E-value=79 Score=32.64 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=44.4
Q ss_pred ceEEEEEEecCccccCCC---cccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccCCCCCCcccceeeeee
Q 019939 114 QYHVLVIIADGQVTRSVD---TEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVN 190 (333)
Q Consensus 114 ~y~vLlIiTDG~i~d~~~---~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld~~~~~r~~DnvqFv~ 190 (333)
+--||+.|+||...|..- .+-+-|-...+..++.|-- .-|+-.+-||||. +.+.+.+-+|..|.
T Consensus 536 qrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeIEt--rSpveLlAIGigh-----------DvtRyYrravtiVd 602 (620)
T COG4547 536 QRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIET--RSPVELLAIGIGH-----------DVTRYYRRAVTIVD 602 (620)
T ss_pred hceEEEEecCCCcccccccccCCchHHHHHHHHHHHHHhc--CCchhheeeeccc-----------ccchhhhhheeEec
Confidence 346999999998766200 1112233334555555543 4699999999996 45666677888888
Q ss_pred cccc
Q 019939 191 FTEI 194 (333)
Q Consensus 191 ~~~~ 194 (333)
..++
T Consensus 603 aeeL 606 (620)
T COG4547 603 AEEL 606 (620)
T ss_pred HHHh
Confidence 7766
No 201
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=22.15 E-value=50 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.779 Sum_probs=19.1
Q ss_pred CccchhhhhcC--CCCCCcccccccc
Q 019939 306 HQTCCGCGQDL--DLCPICRSFIQTR 329 (333)
Q Consensus 306 H~fC~~C~~~~--~~CP~CR~~i~~~ 329 (333)
..||.+|...+ ..||-|-..+..+
T Consensus 29 CTFC~~C~e~~l~~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETMLNGVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHhcCcCcCCCCccccC
Confidence 35999999877 5899998877554
No 202
>PRK14057 epimerase; Provisional
Probab=22.13 E-value=1.9e+02 Score=27.41 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEe
Q 019939 118 LVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVG 162 (333)
Q Consensus 118 LlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VG 162 (333)
..|-.||.|+. +|+..+++| -.-|+++|
T Consensus 194 ~~IeVDGGI~~--------------~ti~~l~~a---Gad~~V~G 221 (254)
T PRK14057 194 KIIVIDGSLTQ--------------DQLPSLIAQ---GIDRVVSG 221 (254)
T ss_pred ceEEEECCCCH--------------HHHHHHHHC---CCCEEEEC
Confidence 57889999983 788777775 34466666
No 203
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=22.04 E-value=2.1e+02 Score=20.43 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=26.5
Q ss_pred ceeecCC-CChHHHHHHHHHHHHhcCCceEEEEEEec
Q 019939 88 HLRLAGP-TSFAPIIEMAITIVEHSGGQYHVLVIIAD 123 (333)
Q Consensus 88 ~v~l~gp-t~fapvI~~~~~~~~~~~~~y~vLlIiTD 123 (333)
.|..+|. ++-..+.+++.+.+.+.|..|+.++-+..
T Consensus 7 ~Isvs~~~~s~~d~~~~la~kAd~~GA~~y~I~~~~~ 43 (56)
T PF07338_consen 7 TISVSGNFGSPDDAEEALAKKADEKGAKYYRITSASE 43 (56)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHTT-SEEEEEEEEE
T ss_pred EEEEccccCCHHHHHHHHHHHHHHcCCCEEEEEEEEc
Confidence 4667777 88889999999999998887665544433
No 204
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.83 E-value=1.9e+02 Score=28.17 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEE
Q 019939 99 PIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSI 158 (333)
Q Consensus 99 pvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSi 158 (333)
.+|++..+++..++. ++++=|+.|+.- .|+..++.+.+.++.||+|
T Consensus 56 ~Li~~~~elsd~tg~-p~~~~v~~~~~e-------------am~k~I~~v~~~~d~Pl~I 101 (308)
T PRK00979 56 ALINRQEELSDKTGN-PALLDVVGESPE-------------AMEKYIDFVSEITDLPFLI 101 (308)
T ss_pred HHHHHHHHHHHHhCC-CeEEEEecChHH-------------HHHHHHHHHHhcCCCCEEE
Confidence 356777777777754 456667777653 3899999999999999986
No 205
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.88 E-value=32 Score=32.77 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=19.7
Q ss_pred CCCeecccccCCcccee-CC---C--CccchhhhhcC----CCCCCcccccccc
Q 019939 286 DNHVCPICLTDPKDMAF-GC---G--HQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l-~C---g--H~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
....||||=..+.-.++ .= | |.+|.-|...+ ..||.|-..-...
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~ 224 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEK 224 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-E
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcc
Confidence 45799999998877444 22 3 45788888644 2788886654443
No 206
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.77 E-value=36 Score=23.93 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=5.3
Q ss_pred CCCCccccccc
Q 019939 318 LCPICRSFIQT 328 (333)
Q Consensus 318 ~CP~CR~~i~~ 328 (333)
.||+|.++++.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 68888888753
No 207
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.70 E-value=65 Score=21.58 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=13.0
Q ss_pred CCCCccchhhh---hcCCCCCCccc
Q 019939 303 GCGHQTCCGCG---QDLDLCPICRS 324 (333)
Q Consensus 303 ~CgH~fC~~C~---~~~~~CP~CR~ 324 (333)
.|||.|=.... .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 56766533111 23458999988
No 208
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.06 E-value=49 Score=32.37 Aligned_cols=26 Identities=35% Similarity=0.777 Sum_probs=16.4
Q ss_pred ceeCCCCccch---hhh----hcCCCCCCcccc
Q 019939 300 MAFGCGHQTCC---GCG----QDLDLCPICRSF 325 (333)
Q Consensus 300 ~~l~CgH~fC~---~C~----~~~~~CP~CR~~ 325 (333)
+.+.|||.-=. .|- .+-..||+||..
T Consensus 318 vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 318 VYLNCGHVHGYHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred EEEeccccccccccccccccCcccCcCCeeeee
Confidence 56699998311 232 234689999863
Done!