Query 019939
Match_columns 333
No_of_seqs 317 out of 1549
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.2 7.8E-12 2.7E-16 93.2 5.4 51 283-333 11-63 (68)
2 2ecg_A Baculoviral IAP repeat- 99.2 1.6E-12 5.4E-17 98.3 -1.8 49 285-333 23-73 (75)
3 4ic3_A E3 ubiquitin-protein li 99.1 2.1E-11 7.2E-16 92.0 2.2 50 284-333 21-72 (74)
4 2yho_A E3 ubiquitin-protein li 99.0 5.8E-11 2E-15 90.9 1.9 49 285-333 16-66 (79)
5 2ysl_A Tripartite motif-contai 99.0 2.7E-10 9.4E-15 84.7 5.1 49 280-328 13-69 (73)
6 2vje_B MDM4 protein; proto-onc 99.0 3.7E-11 1.3E-15 88.0 -0.9 48 286-333 6-61 (63)
7 2vje_A E3 ubiquitin-protein li 98.9 4.8E-11 1.7E-15 87.6 -1.3 49 285-333 6-62 (64)
8 2d8t_A Dactylidin, ring finger 98.9 5.7E-10 2E-14 83.0 4.2 45 284-328 12-61 (71)
9 2egp_A Tripartite motif-contai 98.9 1.1E-09 3.7E-14 82.6 4.6 48 281-328 6-65 (79)
10 2djb_A Polycomb group ring fin 98.9 9.5E-10 3.3E-14 82.0 4.1 50 280-329 8-63 (72)
11 2ecw_A Tripartite motif-contai 98.9 1.9E-09 6.5E-14 81.9 5.4 49 280-328 12-71 (85)
12 2ea6_A Ring finger protein 4; 98.9 8.1E-10 2.8E-14 80.9 3.2 48 281-328 9-68 (69)
13 1e4u_A Transcriptional repress 98.9 1E-09 3.5E-14 83.9 3.8 49 282-330 6-64 (78)
14 2ecn_A Ring finger protein 141 98.9 1E-09 3.4E-14 81.1 3.3 51 282-332 10-64 (70)
15 2ecv_A Tripartite motif-contai 98.8 3.1E-09 1.1E-13 80.7 5.7 48 281-328 13-71 (85)
16 2csy_A Zinc finger protein 183 98.8 1.9E-09 6.4E-14 82.1 4.1 47 282-328 10-61 (81)
17 2yur_A Retinoblastoma-binding 98.8 1.6E-09 5.4E-14 81.3 3.4 48 281-328 9-64 (74)
18 3l11_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 88.6 2.2 50 279-328 7-62 (115)
19 2ecy_A TNF receptor-associated 98.8 4E-09 1.4E-13 77.1 4.7 48 282-329 10-63 (66)
20 3t6p_A Baculoviral IAP repeat- 98.8 1.8E-09 6E-14 104.3 3.6 50 284-333 292-343 (345)
21 1bor_A Transcription factor PM 98.8 2.4E-09 8.2E-14 76.2 3.2 45 284-328 3-49 (56)
22 3ztg_A E3 ubiquitin-protein li 98.8 2.9E-09 9.9E-14 82.8 3.6 46 282-327 8-61 (92)
23 2ysj_A Tripartite motif-contai 98.8 4.7E-09 1.6E-13 76.0 3.7 44 279-322 12-63 (63)
24 2ct2_A Tripartite motif protei 98.7 5.4E-09 1.9E-13 80.2 4.1 48 281-328 9-68 (88)
25 2ect_A Ring finger protein 126 98.7 5.2E-09 1.8E-13 78.9 3.9 49 281-329 9-65 (78)
26 4ayc_A E3 ubiquitin-protein li 98.7 2E-09 6.8E-14 90.4 1.1 44 286-329 52-100 (138)
27 3ng2_A RNF4, snurf, ring finge 98.7 3E-09 1E-13 78.5 1.9 50 284-333 7-70 (71)
28 2ep4_A Ring finger protein 24; 98.7 8.6E-09 2.9E-13 76.9 3.7 51 281-331 9-67 (74)
29 1t1h_A Gspef-atpub14, armadill 98.7 6.7E-09 2.3E-13 78.3 2.7 46 283-328 4-55 (78)
30 1chc_A Equine herpes virus-1 r 98.7 6.4E-09 2.2E-13 76.2 2.4 47 285-331 3-55 (68)
31 2ecj_A Tripartite motif-contai 98.7 1.2E-08 4.1E-13 72.2 3.7 42 281-322 9-58 (58)
32 2xeu_A Ring finger protein 4; 98.6 6.9E-09 2.4E-13 74.7 1.7 48 286-333 2-63 (64)
33 1wgm_A Ubiquitin conjugation f 98.6 3.1E-08 1.1E-12 78.8 4.8 48 281-328 16-69 (98)
34 3fl2_A E3 ubiquitin-protein li 98.6 5.3E-09 1.8E-13 86.0 0.2 44 285-328 50-99 (124)
35 2kiz_A E3 ubiquitin-protein li 98.6 2.3E-08 8E-13 73.4 3.6 48 283-330 10-65 (69)
36 1iym_A EL5; ring-H2 finger, ub 98.6 3.4E-08 1.2E-12 69.2 3.7 44 284-327 2-54 (55)
37 3lrq_A E3 ubiquitin-protein li 98.6 8.8E-09 3E-13 81.8 0.6 46 283-328 18-70 (100)
38 2kr4_A Ubiquitin conjugation f 98.6 3.7E-08 1.3E-12 76.1 3.8 47 282-328 9-60 (85)
39 1g25_A CDK-activating kinase a 98.6 1.4E-08 4.7E-13 74.0 1.2 43 286-328 2-55 (65)
40 1x4j_A Ring finger protein 38; 98.5 3.7E-08 1.3E-12 73.7 3.4 45 284-328 20-72 (75)
41 2kre_A Ubiquitin conjugation f 98.5 7.6E-08 2.6E-12 76.8 5.3 47 282-328 24-75 (100)
42 2ckl_A Polycomb group ring fin 98.5 1.9E-08 6.6E-13 80.6 1.7 45 284-328 12-62 (108)
43 2y43_A E3 ubiquitin-protein li 98.5 5.8E-09 2E-13 82.4 -2.1 45 284-328 19-69 (99)
44 2ckl_B Ubiquitin ligase protei 98.5 2.3E-08 7.9E-13 86.1 1.5 47 282-328 49-102 (165)
45 1jm7_B BARD1, BRCA1-associated 98.5 3.1E-08 1E-12 80.7 2.1 46 283-328 18-67 (117)
46 2ecm_A Ring finger and CHY zin 98.5 5.2E-08 1.8E-12 68.2 2.8 42 286-327 4-54 (55)
47 3knv_A TNF receptor-associated 98.5 1.5E-08 5E-13 85.8 -1.0 44 283-326 27-76 (141)
48 2l0b_A E3 ubiquitin-protein li 98.4 6.9E-08 2.4E-12 75.3 2.7 46 284-329 37-90 (91)
49 3hct_A TNF receptor-associated 98.4 6.5E-08 2.2E-12 78.9 2.7 47 282-328 13-65 (118)
50 1z6u_A NP95-like ring finger p 98.4 5E-08 1.7E-12 83.3 2.0 45 285-329 76-126 (150)
51 1jm7_A BRCA1, breast cancer ty 98.4 4E-08 1.4E-12 78.8 1.3 43 286-328 20-70 (112)
52 2y1n_A E3 ubiquitin-protein li 98.4 1E-07 3.6E-12 92.9 3.9 46 286-331 331-382 (389)
53 1v87_A Deltex protein 2; ring- 98.4 8E-08 2.7E-12 77.5 1.9 44 286-329 24-95 (114)
54 2c2l_A CHIP, carboxy terminus 98.4 1.9E-07 6.4E-12 85.8 4.0 44 285-328 206-255 (281)
55 1rmd_A RAG1; V(D)J recombinati 98.4 3.3E-08 1.1E-12 80.2 -1.0 46 283-328 19-70 (116)
56 4ap4_A E3 ubiquitin ligase RNF 98.2 2.8E-07 9.7E-12 75.4 1.5 44 285-328 5-60 (133)
57 2yu4_A E3 SUMO-protein ligase 98.2 4.9E-07 1.7E-11 71.0 2.5 42 284-325 4-59 (94)
58 3hcs_A TNF receptor-associated 98.1 6.1E-07 2.1E-11 77.4 1.4 47 282-328 13-65 (170)
59 2f42_A STIP1 homology and U-bo 98.1 8.4E-07 2.9E-11 78.0 2.3 44 285-328 104-153 (179)
60 4ap4_A E3 ubiquitin ligase RNF 98.1 7.9E-07 2.7E-11 72.6 1.1 49 285-333 70-132 (133)
61 2ecl_A Ring-box protein 2; RNF 98.0 3.2E-06 1.1E-10 64.4 4.1 43 286-328 14-76 (81)
62 4hqf_A Thrombospondin-related 97.9 3.3E-05 1.1E-09 71.3 8.8 133 26-175 38-178 (281)
63 3htk_C E3 SUMO-protein ligase 97.9 3.7E-06 1.3E-10 77.8 2.2 45 284-328 178-232 (267)
64 4hqo_A Sporozoite surface prot 97.8 5.6E-05 1.9E-09 69.4 8.8 134 25-175 34-175 (266)
65 3ibs_A Conserved hypothetical 97.8 6.4E-05 2.2E-09 65.9 8.5 129 15-166 22-150 (218)
66 1wim_A KIAA0161 protein; ring 97.7 5.9E-06 2E-10 64.4 1.0 40 286-325 4-61 (94)
67 3dpl_R Ring-box protein 1; ubi 97.7 1.6E-05 5.4E-10 63.9 2.9 42 286-327 36-100 (106)
68 1shu_X Anthrax toxin receptor 97.7 0.00013 4.6E-09 61.9 8.7 113 43-175 40-154 (182)
69 3n2n_F Anthrax toxin receptor 97.6 0.00023 7.7E-09 60.6 9.4 129 27-175 24-157 (185)
70 4b4t_W RPN10, 26S proteasome r 97.6 0.00036 1.2E-08 64.9 10.7 147 23-192 22-175 (268)
71 2x5n_A SPRPN10, 26S proteasome 97.5 0.00054 1.9E-08 60.3 10.8 154 15-194 13-173 (192)
72 4a0k_B E3 ubiquitin-protein li 97.5 1.4E-05 4.6E-10 65.5 0.3 42 286-327 47-111 (117)
73 2xgg_A Microneme protein 2; A/ 97.5 0.0006 2E-08 58.3 10.6 122 25-166 33-162 (178)
74 2d8s_A Cellular modulator of i 97.5 6.1E-05 2.1E-09 57.4 3.8 45 285-329 13-71 (80)
75 4fx5_A VON willebrand factor t 97.4 0.00024 8.1E-09 70.9 8.1 134 24-175 94-230 (464)
76 1q0p_A Complement factor B; VO 97.4 0.00029 1E-08 61.6 7.6 136 26-175 32-190 (223)
77 1atz_A VON willebrand factor; 97.4 0.00042 1.4E-08 59.6 8.1 127 25-175 21-156 (189)
78 2b2x_A Integrin alpha-1; compu 97.4 0.00076 2.6E-08 59.7 9.9 117 27-166 38-164 (223)
79 1pt6_A Integrin alpha-1; cell 97.4 0.00085 2.9E-08 58.8 9.8 116 27-165 23-148 (213)
80 1ijb_A VON willebrand factor; 97.3 0.00051 1.7E-08 60.0 8.0 130 25-175 29-167 (202)
81 1n3y_A Integrin alpha-X; alpha 97.2 0.0001 3.6E-09 63.5 1.9 127 26-175 26-165 (198)
82 3vk6_A E3 ubiquitin-protein li 97.2 0.00017 5.7E-09 57.1 2.7 41 289-329 3-50 (101)
83 2x31_A Magnesium-chelatase 60 97.1 9.9E-05 3.4E-09 63.4 1.0 137 25-175 21-161 (189)
84 2bay_A PRE-mRNA splicing facto 97.1 0.00017 5.8E-09 52.0 1.6 42 287-328 3-50 (61)
85 3hrz_D Complement factor B; se 97.1 0.0028 9.7E-08 65.6 11.4 133 25-175 259-418 (741)
86 1v7p_C Integrin alpha-2; snake 97.0 0.0033 1.1E-07 54.4 10.0 116 27-165 22-147 (200)
87 2odp_A Complement C2; C3/C5 co 97.0 0.00083 2.8E-08 66.7 6.9 138 25-176 25-185 (509)
88 1mf7_A Integrin alpha M; cell 96.9 0.00016 5.5E-09 62.4 0.6 128 25-175 21-161 (194)
89 1rrk_A Complement factor B; BB 96.6 0.0073 2.5E-07 59.4 9.6 138 25-176 17-177 (497)
90 2ct0_A Non-SMC element 1 homol 96.2 0.0079 2.7E-07 45.0 5.7 45 285-329 13-65 (74)
91 3zqk_A VON willebrand factor; 95.8 0.0072 2.4E-07 52.5 4.4 122 25-175 37-168 (199)
92 1jey_A KU70; double-strand DNA 95.6 0.083 2.8E-06 54.2 12.1 145 15-169 46-212 (609)
93 1mjn_A Integrin alpha-L; rossm 95.5 0.065 2.2E-06 45.5 9.3 123 25-175 18-151 (179)
94 3k1l_B Fancl; UBC, ring, RWD, 95.3 0.0045 1.5E-07 59.3 1.3 45 285-329 306-374 (381)
95 1jey_B KU80; double-strand DNA 94.8 0.16 5.4E-06 51.6 11.2 135 15-166 18-170 (565)
96 3k6s_A Integrin alpha-X; cell 94.7 0.021 7.1E-07 62.6 4.6 128 24-175 145-286 (1095)
97 1vyx_A ORF K3, K3RING; zinc-bi 94.4 0.02 7E-07 40.8 2.4 44 285-328 4-59 (60)
98 2ko5_A Ring finger protein Z; 93.8 0.11 3.7E-06 40.5 5.7 51 281-332 22-77 (99)
99 1yvr_A RO autoantigen, 60-kDa 93.4 0.39 1.3E-05 48.3 10.5 99 45-168 408-506 (538)
100 2jun_A Midline-1; B-BOX, TRIM, 91.7 0.06 2.1E-06 41.7 1.6 30 286-315 2-35 (101)
101 2nvo_A RO sixty-related protei 87.9 2.6 9E-05 42.3 10.5 116 24-167 386-501 (535)
102 2cs3_A Protein C14ORF4, MY039 77.6 1.6 5.4E-05 33.0 2.9 30 285-314 13-47 (93)
103 1z60_A TFIIH basal transcripti 75.4 2 6.9E-05 30.4 2.9 35 288-322 16-58 (59)
104 3nw0_A Non-structural maintena 74.3 1.5 5.2E-05 39.5 2.5 42 287-328 180-229 (238)
105 3rag_A Uncharacterized protein 72.6 2 7E-05 38.9 2.9 41 115-167 10-50 (242)
106 2ww8_A RRGA, cell WALL surface 50.7 76 0.0026 33.8 10.5 40 89-128 351-392 (893)
107 1z2q_A LM5-1; membrane protein 50.6 20 0.00069 26.6 4.5 30 285-314 19-53 (84)
108 1wfl_A Zinc finger protein 216 50.1 27 0.00091 25.8 4.9 25 286-310 24-50 (74)
109 1dvp_A HRS, hepatocyte growth 47.4 16 0.00053 32.1 3.9 28 287-314 161-193 (220)
110 1weu_A Inhibitor of growth fam 47.2 81 0.0028 23.9 7.5 41 286-327 35-87 (91)
111 1wfp_A Zinc finger (AN1-like) 46.6 31 0.001 25.5 4.7 29 283-311 21-51 (74)
112 1weo_A Cellulose synthase, cat 45.6 15 0.00052 28.1 3.0 42 286-327 15-69 (93)
113 2jne_A Hypothetical protein YF 43.4 3.5 0.00012 32.1 -0.8 39 286-327 31-72 (101)
114 2iue_A Pactolus I-domain; memb 42.7 79 0.0027 27.7 7.8 93 23-128 19-118 (212)
115 2zet_C Melanophilin; complex, 41.8 5.4 0.00018 33.6 -0.0 40 286-325 67-117 (153)
116 3zyq_A Hepatocyte growth facto 41.5 18 0.00063 31.9 3.5 42 287-328 164-222 (226)
117 1wfk_A Zinc finger, FYVE domai 41.5 17 0.00057 27.4 2.8 30 285-314 7-41 (88)
118 1wg2_A Zinc finger (AN1-like) 39.5 27 0.00093 25.0 3.4 25 286-310 14-40 (64)
119 1vfy_A Phosphatidylinositol-3- 37.8 21 0.0007 25.8 2.6 27 288-314 12-43 (73)
120 2yw8_A RUN and FYVE domain-con 36.0 22 0.00074 26.3 2.6 29 286-314 18-51 (82)
121 2a20_A Regulating synaptic mem 35.5 3.6 0.00012 29.2 -1.7 43 283-325 5-60 (62)
122 1x64_A Alpha-actinin-2 associa 35.1 1.1E+02 0.0037 22.2 6.5 14 286-299 24-37 (89)
123 2d8v_A Zinc finger FYVE domain 33.9 17 0.00059 26.2 1.6 33 284-316 5-38 (67)
124 3i2d_A E3 SUMO-protein ligase 32.4 25 0.00086 33.7 2.9 41 287-327 249-299 (371)
125 1zbd_B Rabphilin-3A; G protein 32.2 8.5 0.00029 31.6 -0.3 40 286-325 54-107 (134)
126 1x4u_A Zinc finger, FYVE domai 31.9 22 0.00077 26.3 2.1 30 285-314 12-46 (84)
127 1mm2_A MI2-beta; PHD, zinc fin 31.7 43 0.0015 23.2 3.4 41 284-325 6-56 (61)
128 1wil_A KIAA1045 protein; ring 29.5 52 0.0018 24.9 3.6 32 284-315 12-46 (89)
129 2k16_A Transcription initiatio 28.8 31 0.001 24.7 2.3 45 285-329 16-72 (75)
130 4fo9_A E3 SUMO-protein ligase 28.5 33 0.0011 32.8 3.0 42 286-327 214-265 (360)
131 1joc_A EEA1, early endosomal a 28.4 23 0.00078 28.5 1.7 28 287-314 69-101 (125)
132 2lri_C Autoimmune regulator; Z 27.4 92 0.0031 22.0 4.6 39 286-325 11-59 (66)
133 3mpx_A FYVE, rhogef and PH dom 27.3 13 0.00045 35.5 0.0 41 286-326 374-430 (434)
134 1x4s_A Protein FON, zinc finge 27.1 36 0.0012 24.0 2.3 33 287-319 11-48 (59)
135 3t7l_A Zinc finger FYVE domain 27.1 36 0.0012 25.5 2.5 29 286-314 19-52 (90)
136 1y02_A CARP2, FYVE-ring finger 26.6 25 0.00086 28.2 1.6 39 286-324 18-65 (120)
137 2gmg_A Hypothetical protein PF 24.4 28 0.00094 27.4 1.4 24 303-327 72-95 (105)
138 3hr4_A Nitric oxide synthase, 23.9 1.1E+02 0.0036 26.9 5.3 33 137-169 102-136 (219)
139 1wen_A Inhibitor of growth fam 23.6 1.4E+02 0.0047 21.3 5.0 43 285-328 14-68 (71)
140 2e6r_A Jumonji/ARID domain-con 23.4 60 0.0021 24.5 3.1 43 283-325 12-66 (92)
141 2l43_A N-teminal domain from h 23.3 73 0.0025 23.8 3.6 45 283-327 21-77 (88)
142 2jmo_A Parkin; IBR, E3 ligase, 21.4 35 0.0012 25.0 1.4 21 303-324 55-75 (80)
143 2yql_A PHD finger protein 21A; 21.2 53 0.0018 22.2 2.2 40 284-324 6-55 (56)
144 1wff_A Riken cDNA 2810002D23 p 20.3 1.7E+02 0.0058 22.0 5.0 26 285-310 23-51 (85)
145 1wfh_A Zinc finger (AN1-like) 20.0 1E+02 0.0034 22.0 3.5 26 286-311 14-41 (64)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.8e-12 Score=93.15 Aligned_cols=51 Identities=29% Similarity=0.771 Sum_probs=45.9
Q ss_pred CCCCCCeecccccCCcccee-CCCCc-cchhhhhcCCCCCCcccccccccccC
Q 019939 283 STSDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~~~l-~CgH~-fC~~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
...+...|+||++..+++++ ||||. ||..|+..+..||+||++|..++++|
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence 34567899999999999655 99999 99999999999999999999999987
No 2
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-12 Score=98.34 Aligned_cols=49 Identities=31% Similarity=0.867 Sum_probs=44.5
Q ss_pred CCCCeecccccCCccc-eeCCCCc-cchhhhhcCCCCCCcccccccccccC
Q 019939 285 SDNHVCPICLTDPKDM-AFGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~-~l~CgH~-fC~~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
+++..|+||++.+++. .++|||. ||..|+.+...||+||.++..++++|
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 4567899999999994 4599999 99999999999999999999999987
No 3
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.10 E-value=2.1e-11 Score=91.99 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=45.1
Q ss_pred CCCCCeecccccCCcc-ceeCCCCc-cchhhhhcCCCCCCcccccccccccC
Q 019939 284 TSDNHVCPICLTDPKD-MAFGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~CgH~-fC~~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
++++..|+||++.+.+ +.++|||. ||..|+..+..||+||+++..++++|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 3456899999999999 55699999 99999999999999999999999887
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.02 E-value=5.8e-11 Score=90.92 Aligned_cols=49 Identities=29% Similarity=0.799 Sum_probs=44.0
Q ss_pred CCCCeecccccCCccc-eeCCCCc-cchhhhhcCCCCCCcccccccccccC
Q 019939 285 SDNHVCPICLTDPKDM-AFGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~-~l~CgH~-fC~~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
+++..|+||++..+++ .+||||. ||..|+..+..||+||.++..++++|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 3457899999999995 4599999 99999999999999999999998876
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.7e-10 Score=84.72 Aligned_cols=49 Identities=27% Similarity=0.805 Sum_probs=41.0
Q ss_pred CCCCCCCCCeecccccCCcc-ceeCCCCccchhhhhcCC-------CCCCccccccc
Q 019939 280 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD-------LCPICRSFIQT 328 (333)
Q Consensus 280 ~~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~~-------~CP~CR~~i~~ 328 (333)
.....+++..|+||++.+.+ ++++|||.||..|+..+. .||+||+++..
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34556778999999999999 666999999999997542 79999998864
No 6
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.97 E-value=3.7e-11 Score=88.01 Aligned_cols=48 Identities=38% Similarity=0.805 Sum_probs=42.3
Q ss_pred CCCeecccccCCcc-cee--CCCCc-cchhhhhcCC----CCCCcccccccccccC
Q 019939 286 DNHVCPICLTDPKD-MAF--GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 333 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l--~CgH~-fC~~C~~~~~----~CP~CR~~i~~~i~~y 333 (333)
.+..|+||++.+++ +++ ||||. +|..|+.++. .||+||++|..++++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 45789999999998 455 99999 8999998775 8999999999999887
No 7
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=4.8e-11 Score=87.65 Aligned_cols=49 Identities=35% Similarity=0.760 Sum_probs=42.2
Q ss_pred CCCCeecccccCCcc-cee--CCCCc-cchhhhhcCC----CCCCcccccccccccC
Q 019939 285 SDNHVCPICLTDPKD-MAF--GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l--~CgH~-fC~~C~~~~~----~CP~CR~~i~~~i~~y 333 (333)
+++..|+||++.+++ +.+ ||||. +|.+|+.++. .||+||+++..++++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 356789999999999 545 99999 7889997653 6999999999999887
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.7e-10 Score=82.96 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=38.7
Q ss_pred CCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
..++..|+||++.+.+ +.++|||.||..|+.++ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999999 66799999999999865 479999999864
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=82.55 Aligned_cols=48 Identities=27% Similarity=0.721 Sum_probs=40.6
Q ss_pred CCCCCCCCeecccccCCcc-ceeCCCCccchhhhhc-----------CCCCCCccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD-----------LDLCPICRSFIQT 328 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~-----------~~~CP~CR~~i~~ 328 (333)
....+++..|+||++.+.+ ++++|||.||..|+.+ ...||+||..+..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4456788999999999999 6679999999999974 3479999998864
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.5e-10 Score=81.96 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=41.7
Q ss_pred CCCCCCCCCeecccccCCcc-cee-CCCCccchhhhhcC----CCCCCcccccccc
Q 019939 280 PASSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 280 ~~~~~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
....++++..|+||++.+.+ +++ +|||.||..|+.++ ..||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34556778999999999998 666 99999999999643 5899999998754
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.88 E-value=1.9e-09 Score=81.93 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=40.9
Q ss_pred CCCCCCCCCeecccccCCcc-ceeCCCCccchhhhhc----------CCCCCCccccccc
Q 019939 280 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD----------LDLCPICRSFIQT 328 (333)
Q Consensus 280 ~~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~----------~~~CP~CR~~i~~ 328 (333)
.....+++..|+||++.+.+ ++++|||.||..|+.. ...||.||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34456778899999999999 6679999999999964 4589999998864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=8.1e-10 Score=80.93 Aligned_cols=48 Identities=33% Similarity=0.791 Sum_probs=39.1
Q ss_pred CCCCCCCCeecccccCCcc--------ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~--------~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
.....+...|+||++.+.+ +.++|||.||..|+.++ ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3455678899999998876 34599999999999754 589999998865
No 13
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.87 E-value=1e-09 Score=83.88 Aligned_cols=49 Identities=33% Similarity=0.766 Sum_probs=38.9
Q ss_pred CCCCCCCeecccccCCc--cce-eC--CCCccchhhhhcC-----CCCCCccccccccc
Q 019939 282 SSTSDNHVCPICLTDPK--DMA-FG--CGHQTCCGCGQDL-----DLCPICRSFIQTRI 330 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~--~~~-l~--CgH~fC~~C~~~~-----~~CP~CR~~i~~~i 330 (333)
..++++..|+||++.+. +.. ++ |||.||..|+.++ ..||.||+++....
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 44678899999999874 333 35 9999999999765 37999999997654
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=81.15 Aligned_cols=51 Identities=27% Similarity=0.636 Sum_probs=42.2
Q ss_pred CCCCCCCeecccccCCccceeCCCCccchhhhhcC----CCCCCccccccccccc
Q 019939 282 SSTSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIKL 332 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~i~~ 332 (333)
....+...|+||++.+.++.++|||.||..|+.++ ..||+||.++.....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred hcCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 34566789999999999966699999999999855 5799999999865543
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.1e-09 Score=80.75 Aligned_cols=48 Identities=31% Similarity=0.761 Sum_probs=40.6
Q ss_pred CCCCCCCCeecccccCCcc-ceeCCCCccchhhhhc----------CCCCCCccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD----------LDLCPICRSFIQT 328 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~----------~~~CP~CR~~i~~ 328 (333)
....++...|+||++.+.+ +.++|||.||..|+.. ...||.||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456778999999999999 6679999999999964 4689999998864
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.9e-09 Score=82.10 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=39.3
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
...++...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 345567899999999999 56699999999999654 579999999864
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=81.31 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=39.8
Q ss_pred CCCCCCCCeecccccCCcc-ceeC-CCCccchhhhhcC------CCCCCccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL------DLCPICRSFIQT 328 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~~l~-CgH~fC~~C~~~~------~~CP~CR~~i~~ 328 (333)
....+++..|+||++.+.+ ++++ |||.||..|+..+ ..||+||+++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4456778999999999999 6678 9999999999643 489999998643
No 18
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=88.60 Aligned_cols=50 Identities=26% Similarity=0.583 Sum_probs=41.1
Q ss_pred CCCCCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 279 PPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 279 ~~~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
.......++..|+||++.+.+ ++++|||.||..|+.++ ..||.||..+..
T Consensus 7 ~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 7 KDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred ccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 334455677999999999999 66799999999999765 379999998753
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4e-09 Score=77.10 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=40.0
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCcccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 329 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~~ 329 (333)
...+++..|+||++.+.+ +.++|||.||..|+.++ ..||+||+++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345678999999999998 66799999999999743 4799999998654
No 20
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.80 E-value=1.8e-09 Score=104.27 Aligned_cols=50 Identities=28% Similarity=0.854 Sum_probs=45.8
Q ss_pred CCCCCeecccccCCcc-ceeCCCCc-cchhhhhcCCCCCCcccccccccccC
Q 019939 284 TSDNHVCPICLTDPKD-MAFGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 333 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~CgH~-fC~~C~~~~~~CP~CR~~i~~~i~~y 333 (333)
++++..|+||++.+.+ +.++|||. ||..|+..+..||+||.++..++++|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 4567899999999999 55699999 99999999999999999999999987
No 21
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=2.4e-09 Score=76.25 Aligned_cols=45 Identities=27% Similarity=0.546 Sum_probs=38.6
Q ss_pred CCCCCeecccccCCcc-ceeCCCCccchhhhhcC-CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-~~CP~CR~~i~~ 328 (333)
..++..|+||++.+.+ ++++|||.||..|+... ..||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 3567899999999999 66799999999999765 489999998864
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-09 Score=82.82 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=39.1
Q ss_pred CCCCCCCeecccccCCcc-ceeC-CCCccchhhhhcC------CCCCCcccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL------DLCPICRSFIQ 327 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~-CgH~fC~~C~~~~------~~CP~CR~~i~ 327 (333)
...+++..|+||++.+.+ ++++ |||.||..|+..+ ..||+||.++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456778999999999999 6778 9999999999643 48999999873
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4.7e-09 Score=75.96 Aligned_cols=44 Identities=30% Similarity=0.814 Sum_probs=36.1
Q ss_pred CCCCCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-------CCCCCc
Q 019939 279 PPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPIC 322 (333)
Q Consensus 279 ~~~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-------~~CP~C 322 (333)
......+++..|+||++.+.+ ++++|||.||..|+.++ ..||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 334566788999999999999 66799999999999643 379998
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5.4e-09 Score=80.19 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=39.1
Q ss_pred CCCCCCCCeecccccCCcc----ce-eCCCCccchhhhhcC-------CCCCCccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD----MA-FGCGHQTCCGCGQDL-------DLCPICRSFIQT 328 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~----~~-l~CgH~fC~~C~~~~-------~~CP~CR~~i~~ 328 (333)
....++...|+||++.+.+ .+ ++|||.||..|+.++ ..||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456778899999999987 44 499999999999744 589999998754
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=5.2e-09 Score=78.87 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=38.6
Q ss_pred CCCCCCCCeecccccCCcc----ceeCCCCccchhhhhcC----CCCCCcccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
.....+...|+||++.+.+ ..++|||.||..|+.++ ..||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3345667899999998864 23499999999999743 5899999998753
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.72 E-value=2e-09 Score=90.44 Aligned_cols=44 Identities=30% Similarity=0.696 Sum_probs=37.7
Q ss_pred CCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCcccccccc
Q 019939 286 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
++..|+||++.+.+ ++++|||.||..|+..+ ..||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45789999999999 66799999999999753 4899999998754
No 27
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.72 E-value=3e-09 Score=78.47 Aligned_cols=50 Identities=34% Similarity=0.812 Sum_probs=39.4
Q ss_pred CCCCCeecccccCCcc--------ceeCCCCccchhhhhcC----CCCCCccccccc--ccccC
Q 019939 284 TSDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT--RIKLY 333 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~--------~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~--~i~~y 333 (333)
.+++..|+||++.+.+ +.++|||.||..|+.++ ..||+||.++.. ..++|
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 3567899999998876 34599999999999643 589999999874 34444
No 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.6e-09 Score=76.85 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=39.9
Q ss_pred CCCCCCCCeecccccCCcc-c---eeCCCCccchhhhhcC----CCCCCcccccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-M---AFGCGHQTCCGCGQDL----DLCPICRSFIQTRIK 331 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~---~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~i~ 331 (333)
.....++..|+||++.+.+ . +++|||.||..|+.++ ..||+||.++.....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3445677899999999865 2 3399999999999753 589999999876543
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.68 E-value=6.7e-09 Score=78.26 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCCCCCeecccccCCcc-ceeCCCCccchhhhhc-----CCCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD-----LDLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~-----~~~CP~CR~~i~~ 328 (333)
...++..|+||++.+.+ ++++|||.||..|+.+ ...||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35678999999999999 6679999999999963 3579999998864
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.67 E-value=6.4e-09 Score=76.19 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=38.8
Q ss_pred CCCCeecccccCCcc-ce-eCCCCccchhhhhc----CCCCCCcccccccccc
Q 019939 285 SDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQD----LDLCPICRSFIQTRIK 331 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~-l~CgH~fC~~C~~~----~~~CP~CR~~i~~~i~ 331 (333)
+++..|+||++.+.+ ++ ++|||.||..|+.+ ...||+||.++...++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 356789999999988 34 49999999999964 3589999999987654
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=72.20 Aligned_cols=42 Identities=29% Similarity=0.729 Sum_probs=35.0
Q ss_pred CCCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-------CCCCCc
Q 019939 281 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPIC 322 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-------~~CP~C 322 (333)
....+++..|+||++.+.+ +.++|||.||..|+.++ ..||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3455678899999999999 66799999999999654 479988
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.64 E-value=6.9e-09 Score=74.74 Aligned_cols=48 Identities=33% Similarity=0.808 Sum_probs=38.3
Q ss_pred CCCeecccccCCcc--------ceeCCCCccchhhhhcC----CCCCCccccccc--ccccC
Q 019939 286 DNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT--RIKLY 333 (333)
Q Consensus 286 ~~~~C~ICl~~~~~--------~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~--~i~~y 333 (333)
++..|+||++.+.+ +.++|||.||..|+.++ ..||+||.++.. ..++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 46789999998876 34599999999999744 589999999874 45554
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.61 E-value=3.1e-08 Score=78.76 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=40.8
Q ss_pred CCCCCCCCeecccccCCcc-ceeCCC-CccchhhhhcC----CCCCCccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKD-MAFGCG-HQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~-~~l~Cg-H~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
.....++..|+||++.+++ |+++|| |.||+.|+.++ ..||+||+++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3455678999999999999 777999 99999999754 479999998864
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.60 E-value=5.3e-09 Score=86.01 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=37.9
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
+++..|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456899999999999 66799999999999633 489999999865
No 35
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=2.3e-08 Score=73.44 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=38.1
Q ss_pred CCCCCCeecccccCCcc----ceeCCCCccchhhhhcC----CCCCCccccccccc
Q 019939 283 STSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTRI 330 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~i 330 (333)
...++..|+||++.+.. +.++|||.||..|+..+ ..||+||..+...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34566899999998753 34599999999999743 58999999987654
No 36
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.57 E-value=3.4e-08 Score=69.24 Aligned_cols=44 Identities=30% Similarity=0.713 Sum_probs=35.6
Q ss_pred CCCCCeecccccCCcc----ceeC-CCCccchhhhhcC----CCCCCcccccc
Q 019939 284 TSDNHVCPICLTDPKD----MAFG-CGHQTCCGCGQDL----DLCPICRSFIQ 327 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~----~~l~-CgH~fC~~C~~~~----~~CP~CR~~i~ 327 (333)
.+++..|+||++.+.+ +.++ |||.||..|+.++ ..||+||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999876 3456 9999999999754 48999998763
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.57 E-value=8.8e-09 Score=81.81 Aligned_cols=46 Identities=28% Similarity=0.625 Sum_probs=38.9
Q ss_pred CCCCCCeecccccCCcc-ce-eCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~-l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
.++++..|+||++.+.+ +. ++|||.||..|+.++ ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34567899999999999 66 699999999999743 589999998854
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.55 E-value=3.7e-08 Score=76.12 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=40.3
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
....++..|+||++.+++ ++++|||.||+.|+.+. ..||+||.++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345678999999999999 77799999999999644 589999998864
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.4e-08 Score=74.00 Aligned_cols=43 Identities=33% Similarity=0.728 Sum_probs=35.0
Q ss_pred CCCeeccccc-CCccc-----eeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 286 DNHVCPICLT-DPKDM-----AFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~-~~~~~-----~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
++..|+||++ .+.+. +++|||.||..|+.++ ..||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 66552 3599999999999755 479999999864
No 40
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=3.7e-08 Score=73.69 Aligned_cols=45 Identities=27% Similarity=0.675 Sum_probs=36.6
Q ss_pred CCCCCeecccccCCcc----ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~----~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
..++..|+||++.+.+ ..++|||.||..|+.++ ..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899999998765 33599999999999754 589999998864
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.54 E-value=7.6e-08 Score=76.76 Aligned_cols=47 Identities=17% Similarity=0.061 Sum_probs=40.3
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
....++..|+||++.+++ |+++|||.||+.|+.++ ..||.||.++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345678999999999999 77799999999999754 489999998864
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.53 E-value=1.9e-08 Score=80.64 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=39.0
Q ss_pred CCCCCeecccccCCcc-cee-CCCCccchhhhhcC----CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
++++..|+||++.+.+ +++ +|||.||..|+..+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4567899999999999 677 99999999999754 589999999874
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.50 E-value=5.8e-09 Score=82.36 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=38.0
Q ss_pred CCCCCeecccccCCcc-cee-CCCCccchhhhhcC----CCCCCccccccc
Q 019939 284 TSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
.+++..|+||++.+.+ +++ +|||.||..|+.++ ..||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3456899999999999 666 89999999999643 489999998864
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.50 E-value=2.3e-08 Score=86.14 Aligned_cols=47 Identities=34% Similarity=0.728 Sum_probs=38.6
Q ss_pred CCCCCCCeecccccCCcc-cee-CCCCccchhhhhcC-----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
....+...|+||++.+.+ +.+ +|||.||..|+.++ ..||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345567899999999999 666 99999999999643 479999998853
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=3.1e-08 Score=80.73 Aligned_cols=46 Identities=24% Similarity=0.579 Sum_probs=39.7
Q ss_pred CCCCCCeecccccCCcc-cee-CCCCccchhhhhcC--CCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL--DLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~--~~CP~CR~~i~~ 328 (333)
.++++..|+||++.+.+ +++ +|||.||..|+..+ ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 34577999999999999 777 99999999999877 479999998853
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.49 E-value=5.2e-08 Score=68.18 Aligned_cols=42 Identities=31% Similarity=0.738 Sum_probs=34.5
Q ss_pred CCCeecccccCCcc----c-eeCCCCccchhhhhcC----CCCCCcccccc
Q 019939 286 DNHVCPICLTDPKD----M-AFGCGHQTCCGCGQDL----DLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~-~l~CgH~fC~~C~~~~----~~CP~CR~~i~ 327 (333)
++..|+||++.+.+ + .++|||.||..|+.++ ..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999998754 3 3499999999999754 68999999875
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.45 E-value=1.5e-08 Score=85.79 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=38.0
Q ss_pred CCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccc
Q 019939 283 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFI 326 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i 326 (333)
.++++..|+||++.+.+ +.++|||.||..|+.++ ..||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45678999999999999 66799999999999754 3799999975
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.44 E-value=6.9e-08 Score=75.26 Aligned_cols=46 Identities=24% Similarity=0.601 Sum_probs=37.0
Q ss_pred CCCCCeecccccCCcc---c-eeCCCCccchhhhhcC----CCCCCcccccccc
Q 019939 284 TSDNHVCPICLTDPKD---M-AFGCGHQTCCGCGQDL----DLCPICRSFIQTR 329 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~---~-~l~CgH~fC~~C~~~~----~~CP~CR~~i~~~ 329 (333)
..++..|+||++.+.+ + .++|||.||..|+..+ ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 4567899999988765 3 3599999999999743 5899999988653
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.44 E-value=6.5e-08 Score=78.88 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=40.0
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
...+++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 356678899999999999 66799999999999654 389999998865
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.44 E-value=5e-08 Score=83.27 Aligned_cols=45 Identities=24% Similarity=0.509 Sum_probs=38.1
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~~ 329 (333)
++...|+||++.+.+ ++++|||.||..|+..+ ..||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 356899999999999 66799999999999644 3799999998754
No 51
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=4e-08 Score=78.75 Aligned_cols=43 Identities=35% Similarity=0.732 Sum_probs=36.5
Q ss_pred CCCeecccccCCcc-ceeCCCCccchhhhhcC-------CCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-------~~CP~CR~~i~~ 328 (333)
+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45789999999999 66799999999999643 379999998864
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.42 E-value=1e-07 Score=92.94 Aligned_cols=46 Identities=33% Similarity=0.691 Sum_probs=38.7
Q ss_pred CCCeecccccCCcc-ceeCCCCccchhhhh-----cCCCCCCcccccccccc
Q 019939 286 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQ-----DLDLCPICRSFIQTRIK 331 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~-----~~~~CP~CR~~i~~~i~ 331 (333)
....|+||++...+ +.++|||.||..|+. ....||+||.++.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 34799999999999 556999999999996 35689999999987543
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.39 E-value=8e-08 Score=77.48 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=34.4
Q ss_pred CCCeecccccCCcc-c------------------eeCCCCccchhhhhcC---------CCCCCcccccccc
Q 019939 286 DNHVCPICLTDPKD-M------------------AFGCGHQTCCGCGQDL---------DLCPICRSFIQTR 329 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~------------------~l~CgH~fC~~C~~~~---------~~CP~CR~~i~~~ 329 (333)
.+..|+||++.+.+ . .++|||.||..|+..+ ..||+||..+..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34699999998754 1 4599999999999632 3899999988643
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=1.9e-07 Score=85.83 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=37.7
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
.+...|+||++.+.+ |+++|||+||+.|+.+. ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 367899999999999 77799999999999643 359999999864
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.36 E-value=3.3e-08 Score=80.20 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=38.6
Q ss_pred CCCCCCeecccccCCcc-ceeCCCCccchhhhhc-----CCCCCCccccccc
Q 019939 283 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD-----LDLCPICRSFIQT 328 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~-----~~~CP~CR~~i~~ 328 (333)
...++..|+||++.+.+ +.++|||.||..|+.+ ...||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34567899999999999 6679999999999963 3589999999864
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.22 E-value=2.8e-07 Score=75.36 Aligned_cols=44 Identities=36% Similarity=0.876 Sum_probs=36.5
Q ss_pred CCCCeecccccCCcc--------ceeCCCCccchhhhhcC----CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~--------~~l~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
.++..|+||++.+.+ ++++|||.||..|+.++ ..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 467899999999876 34599999999999643 589999998864
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=4.9e-07 Score=70.97 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=35.4
Q ss_pred CCCCCeecccccCCcc-ceeC-CCCccchhhhhcC----------CCCCC--cccc
Q 019939 284 TSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL----------DLCPI--CRSF 325 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l~-CgH~fC~~C~~~~----------~~CP~--CR~~ 325 (333)
..++..|+||++.+.+ |+++ |||.||+.|+..+ ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4577899999999999 7775 9999999999532 38999 9865
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.11 E-value=6.1e-07 Score=77.43 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=40.1
Q ss_pred CCCCCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 282 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 282 ~~~~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
..+++...|+||++.+.+ +.++|||.||..|+.++ ..||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 356678999999999999 66699999999999754 389999998865
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.11 E-value=8.4e-07 Score=77.96 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=37.8
Q ss_pred CCCCeecccccCCcc-ceeCCCCccchhhhhcC-----CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~CgH~fC~~C~~~~-----~~CP~CR~~i~~ 328 (333)
.+...|+||++.+.+ |+++|||.||+.|+... ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 467999999999999 77799999999999643 359999998865
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.06 E-value=7.9e-07 Score=72.65 Aligned_cols=49 Identities=35% Similarity=0.834 Sum_probs=39.0
Q ss_pred CCCCeecccccCCcc--------ceeCCCCccchhhhhc----CCCCCCccccccc--ccccC
Q 019939 285 SDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQD----LDLCPICRSFIQT--RIKLY 333 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~--------~~l~CgH~fC~~C~~~----~~~CP~CR~~i~~--~i~~y 333 (333)
++...|+||++.+.+ +.++|||.||..|+.+ ...||+||..+.. ..++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 467889999998876 4459999999999964 4699999999874 34544
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=3.2e-06 Score=64.36 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=32.8
Q ss_pred CCCeecccccCCcc--------------c-ee-CCCCccchhhhhcC----CCCCCccccccc
Q 019939 286 DNHVCPICLTDPKD--------------M-AF-GCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 286 ~~~~C~ICl~~~~~--------------~-~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
++..|+||++.+.+ + ++ +|||.|+..|+.+. ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888887743 2 34 69999999999743 589999998753
No 62
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.89 E-value=3.3e-05 Score=71.34 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=89.6
Q ss_pred HH-HHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 26 PY-EQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 26 ~Y-~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
.+ +.+...+..++..++. +-.+-++.|+.... .+|.++.... ...+.++++-..........|.|+....|
T Consensus 38 ~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL 112 (281)
T 4hqf_A 38 NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLHSDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDAL 112 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEECSSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEccccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHH
Confidence 45 6777777788787775 55799999987542 2344443211 23445544443332234467999999999
Q ss_pred HHHHHHHHhcC---CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC-CCCcccccC
Q 019939 102 EMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG-PWDMMREFD 175 (333)
Q Consensus 102 ~~~~~~~~~~~---~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~-~f~~m~~ld 175 (333)
+.+.+.....+ ....++|+||||..+| .....+++.++.+.-+-|..||||+. +-+.|+.+-
T Consensus 113 ~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA 178 (281)
T 4hqf_A 113 LQVRKHLNDRINRENANQLVVILTDGIPDS------------IQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLV 178 (281)
T ss_dssp HHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHHHHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHT
T ss_pred HHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHHHHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhh
Confidence 99987765432 2467899999999875 44566666666677799999999985 555566665
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.88 E-value=3.7e-06 Score=77.82 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=37.9
Q ss_pred CCCCCeecccccCCcc-cee-CCCCccchhhhhcC------CCCCC--ccccccc
Q 019939 284 TSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPI--CRSFIQT 328 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~------~~CP~--CR~~i~~ 328 (333)
...+..|+||++.+++ |+. .|||.||+.|+..+ ..||+ ||+.+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4578999999999999 665 99999999999743 36999 9998754
No 64
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.80 E-value=5.6e-05 Score=69.39 Aligned_cols=134 Identities=15% Similarity=0.262 Sum_probs=90.2
Q ss_pred CHH-HHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHH
Q 019939 25 NPY-EQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPI 100 (333)
Q Consensus 25 N~Y-~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapv 100 (333)
..+ +++...+..++..|+ ++-.+-++.|+.... .+|+|+... -...+.++++-...-......|.|+....
T Consensus 34 ~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~A 108 (266)
T 4hqo_A 34 PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLGSGQ--SIDKRQALSKVTELRKTYTPYGTTSMTAA 108 (266)
T ss_dssp HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTTSHH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecCCCC--ccCHHHHHHHHHHhhhccCCCCCCCHHHH
Confidence 445 477888888888887 566799999998632 233332210 01234455444433222356799999999
Q ss_pred HHHHHHHHHhc---CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC-CCcccccC
Q 019939 101 IEMAITIVEHS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-WDMMREFD 175 (333)
Q Consensus 101 I~~~~~~~~~~---~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~-f~~m~~ld 175 (333)
|+.+.+..+.. .....++++||||..+| .....+++.++.+..+.|..||||+.. -+.|+++-
T Consensus 109 L~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA 175 (266)
T 4hqo_A 109 LDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIA 175 (266)
T ss_dssp HHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHHHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHHHHHHHHHHHCCCEEEEEecCcccCHHHHHHhh
Confidence 99998777653 23467999999999876 456667777777778999999999853 33345554
No 65
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=6.4e-05 Score=65.93 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=87.0
Q ss_pred CCccccCCCCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCC
Q 019939 15 RSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGP 94 (333)
Q Consensus 15 ~sLH~~~~~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gp 94 (333)
.|+..-+..++..+.|...+..++..+. +..+-++.|+.... .+++++ .+.+.+.+.-...-+.....|.
T Consensus 22 gSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~------~~~~~~~~~l~~l~~~~~~~g~ 91 (218)
T 3ibs_A 22 NSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPIT------SDYISAKMFLESISPSLISKQG 91 (218)
T ss_dssp GGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEE------SCHHHHHHHHHTCCGGGCCSCS
T ss_pred cCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCC------CCHHHHHHHHHhcCcccCCCCC
Confidence 3444433346888999999999998887 55899999987532 223332 1344444333333333445799
Q ss_pred CChHHHHHHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 95 TSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 95 t~fapvI~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
|+....|+.+.+..........++++||||..++. ...+++..+.+..+.|..||||+.
T Consensus 92 T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 92 TAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp CCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHHHTTTEEEEEEEESCT
T ss_pred CcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHHHhcCCEEEEEEecCC
Confidence 99999999998776554344578999999987751 233445555677899999999974
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.74 E-value=5.9e-06 Score=64.40 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=31.9
Q ss_pred CCCeecccccCCcc-cee---CCCCccchhhhhcC------------CCCCC--cccc
Q 019939 286 DNHVCPICLTDPKD-MAF---GCGHQTCCGCGQDL------------DLCPI--CRSF 325 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l---~CgH~fC~~C~~~~------------~~CP~--CR~~ 325 (333)
+...|+||++.+.. ..+ +|||.||.+|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 56789999999876 333 79999999998421 37999 9988
No 67
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.70 E-value=1.6e-05 Score=63.94 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCCeecccccCCccc------------------e-eCCCCccchhhhhc----CCCCCCcccccc
Q 019939 286 DNHVCPICLTDPKDM------------------A-FGCGHQTCCGCGQD----LDLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~------------------~-l~CgH~fC~~C~~~----~~~CP~CR~~i~ 327 (333)
++..|.||++.+.+. + ++|+|.|+..|+.. ...||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999887631 2 49999999999975 358999999853
No 68
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.68 E-value=0.00013 Score=61.91 Aligned_cols=113 Identities=11% Similarity=0.140 Sum_probs=75.4
Q ss_pred CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHHHHHHhc--CCceEEEEE
Q 019939 43 EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVI 120 (333)
Q Consensus 43 ~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~~~~~~~--~~~y~vLlI 120 (333)
.+..+-++.|+..... ++++. .+.+.+.++-.. +..+...|.|+....|+.+.+..... .....++++
T Consensus 40 ~~~~v~lv~f~~~~~~---~~~~~------~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iil 109 (182)
T 1shu_X 40 PEMRLSFIVFSSQATI---ILPLT------GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIA 109 (182)
T ss_dssp TTEEEEEEEESSSEEE---EEEEE------CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEE
T ss_pred CCceEEEEEeCCCceE---EECCC------CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEE
Confidence 4667999999875321 23332 233333332222 22345679999999999999887654 234678999
Q ss_pred EecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 121 IADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 121 iTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
||||..++. ......+++..+.+..+.|..||||+.+...|+++-
T Consensus 110 iTDG~~~~~----------~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ia 154 (182)
T 1shu_X 110 LTDGKLDGL----------VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIA 154 (182)
T ss_dssp EECCCCCTT----------HHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHS
T ss_pred ECCCCcCCC----------CchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHHHh
Confidence 999997651 123345556666677899999999988877777775
No 69
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.63 E-value=0.00023 Score=60.62 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhhhcc-CCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHH
Q 019939 27 YEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAI 105 (333)
Q Consensus 27 Y~~ai~~i~~vl~~y-D~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~ 105 (333)
+++.++.+-.++..| .++-.+-++.|+.... .+++++. ..+.+.++-.+. ..+..+|.|+....|+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~---~~~~l~~------~~~~~~~~i~~l-~~~~~~g~T~~~~al~~a~ 93 (185)
T 3n2n_F 24 WNEIYYFVEQLAHKFISPQLRMSFIVFSTRGT---TLMKLTE------DREQIRQGLEEL-QKVLPGGDTYMHEGFERAS 93 (185)
T ss_dssp HHHHHHHHHHHHHHCCCTTEEEEEEEESSSEE---EEEEEEC------CHHHHHHHHHHH-HTCCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEecCce---EEeccCC------CHHHHHHHHHHH-hhhcCCCCccHHHHHHHHH
Confidence 444444444444444 3345799999987543 2334331 344444333332 2234579999999999999
Q ss_pred HHHH--hcC--CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 106 TIVE--HSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 106 ~~~~--~~~--~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
+... ..+ ....++++||||..++. ......+++..+.+..+.|..||||+.+.+.|+++-
T Consensus 94 ~~l~~~~~~~~~~~~~iillTDG~~~~~----------~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA 157 (185)
T 3n2n_F 94 EQIYYENRQGYRTASVIIALTDGELHED----------LFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIA 157 (185)
T ss_dssp HHHHHHHTTCBCEEEEEEEEECCCCCHH----------HHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTS
T ss_pred HHHhhccccCCCCCcEEEEEcCCCCCCC----------cccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHh
Confidence 8652 221 24678999999998751 111335566666677899999999987777777665
No 70
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00036 Score=64.88 Aligned_cols=147 Identities=12% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHhhhh---ccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHH
Q 019939 23 DQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAP 99 (333)
Q Consensus 23 ~~N~Y~~ai~~i~~vl~---~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fap 99 (333)
.+|-++.+..++-.++. ..+....+-+..|+....... .+++ .....++. .+..++..|-|+++.
T Consensus 22 ~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl--~plT------~D~~~il~----aL~~l~~~G~T~l~~ 89 (268)
T 4b4t_W 22 PRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL--STFT------AEFGKILA----GLHDTQIEGKLHMAT 89 (268)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE--EEEE------SCHHHHHH----HHTTCCCCSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec--cCCc------chHHHHHH----HhhhcCcCCCCChHH
Confidence 57888877777766666 445567899999976432111 1111 23444443 456788899999999
Q ss_pred HHHHHHHHHHhc--CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCC--CcccccC
Q 019939 100 IIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPW--DMMREFD 175 (333)
Q Consensus 100 vI~~~~~~~~~~--~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f--~~m~~ld 175 (333)
-|+.|....+.. ...-..++++|||.+.+ +.++.++++.++.+.-|+|=+||+|..++ +.|++|-
T Consensus 90 gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~ 158 (268)
T 4b4t_W 90 ALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFI 158 (268)
T ss_dssp HHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHH
Confidence 999999988754 22345678889998765 36788888999999999999999997554 4566664
Q ss_pred CCCCCcccceeeeeecc
Q 019939 176 DNIPARAFDNFQFVNFT 192 (333)
Q Consensus 176 ~~~~~r~~DnvqFv~~~ 192 (333)
+...+..-|+-+||...
T Consensus 159 ~~~Ng~~~~~s~~v~v~ 175 (268)
T 4b4t_W 159 AAVNNPQEETSHLLTVT 175 (268)
T ss_dssp HHHCSSTTTSCEEEEEC
T ss_pred HHhcCCCCCceeEEEeC
Confidence 33333334788888864
No 71
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.54 E-value=0.00054 Score=60.27 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=97.7
Q ss_pred CCccccCCCCCHHHHHHHHHHhhhhcc---CCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee
Q 019939 15 RSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL 91 (333)
Q Consensus 15 ~sLH~~~~~~N~Y~~ai~~i~~vl~~y---D~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l 91 (333)
.|+..-+-.+|..+.|...+..++..| .....+-+..|++...+. +.+++ ...+.+.+ .+..+..
T Consensus 13 ~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~--~~plT------~d~~~i~~----~L~~l~~ 80 (192)
T 2x5n_A 13 EWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV--LSTLT------RDYGKFLS----AMHDLPV 80 (192)
T ss_dssp GGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE--EEEEE------SCHHHHHH----HHTTCCC
T ss_pred HhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE--ecCCC------CCHHHHHH----HHHcCCC
Confidence 455554546899999988877766544 455689999998743221 11222 23444433 4445778
Q ss_pred cCCCChHHHHHHHHHHHHhcC--CceE-EEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCC
Q 019939 92 AGPTSFAPIIEMAITIVEHSG--GQYH-VLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPW 168 (333)
Q Consensus 92 ~gpt~fapvI~~~~~~~~~~~--~~y~-vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f 168 (333)
.|.|++...|+.+.+..++.. .... |+|+++|+. ++ +..+..+++..+.+.-+.+.+||+|..+.
T Consensus 81 ~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~ 148 (192)
T 2x5n_A 81 RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIRLAKRMKKNNVAIDIIHIGELQN 148 (192)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHHHHHHHHHTTEEEEEEEESCC--
T ss_pred CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHHHHHHHHHCCCEEEEEEeCCCCc
Confidence 899999999999998877643 1232 455555544 32 25667777777888899999999998765
Q ss_pred Cc-ccccCCCCCCcccceeeeeecccc
Q 019939 169 DM-MREFDDNIPARAFDNFQFVNFTEI 194 (333)
Q Consensus 169 ~~-m~~ld~~~~~r~~DnvqFv~~~~~ 194 (333)
.. |++|-+... .-||-+||...+-
T Consensus 149 ~~~l~~la~~~n--~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 149 ESALQHFIDAAN--SSDSCHLVSIPPS 173 (192)
T ss_dssp -CHHHHHHHHHC--STTCCEEEEECCC
T ss_pred cHHHHHHHHhcc--CCCceEEEEecCc
Confidence 32 776642222 1268889865543
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.53 E-value=1.4e-05 Score=65.54 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=0.8
Q ss_pred CCCeecccccCCcc------------------ce-eCCCCccchhhhhcC----CCCCCcccccc
Q 019939 286 DNHVCPICLTDPKD------------------MA-FGCGHQTCCGCGQDL----DLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~------------------~~-l~CgH~fC~~C~~~~----~~CP~CR~~i~ 327 (333)
++..|.||++.+.+ ++ .+|+|.|+..|+... ..||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34689999998754 11 389999999999764 48999999853
No 73
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.52 E-value=0.0006 Score=58.30 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
..++++...+..++..|+. .-.+-++.|+.... .+++|+... ....+.+.++-.+ ++. ..|.|+....|
T Consensus 33 ~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~~~--~~~~~~~~~~i~~-l~~--~~g~T~~~~aL 104 (178)
T 2xgg_A 33 QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQSPN--AVDKQLAAHAVLD-MPY--KKGSTNTSDGL 104 (178)
T ss_dssp HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTSGG--GSCHHHHHHHHHH-CCC--CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCCCC--ccCHHHHHHHHHh-CCC--CCCCccHHHHH
Confidence 4678888888888888873 25799999998643 233433211 1144555444332 221 46899999999
Q ss_pred HHHHHHHHhc-----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 102 EMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 102 ~~~~~~~~~~-----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
+.+.+..... .....++++||||..++ .....+++..+.+..+-|..||||+.
T Consensus 105 ~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~~~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 105 KACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DFRTVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HHHHSHHHHHHHHTTCEEEEEECC--
T ss_pred HHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------CccHHHHHHHHHHCCCEEEEEEcCCc
Confidence 9999874221 13457899999999875 22344444444456889999999974
No 74
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=6.1e-05 Score=57.44 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=35.1
Q ss_pred CCCCeecccccCCcc---ceeCCC-----CccchhhhhcC------CCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKD---MAFGCG-----HQTCCGCGQDL------DLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~---~~l~Cg-----H~fC~~C~~~~------~~CP~CR~~i~~~ 329 (333)
.++..|.||++.+.+ +++||. |.|...|+.++ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 456789999987643 445996 99999999754 4899999988654
No 75
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.45 E-value=0.00024 Score=70.87 Aligned_cols=134 Identities=11% Similarity=0.127 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCC--CCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPD--EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~--~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
.+..+.+...+..++..+.++..|-++.|+.... .++++... .....+.+. .++.+..+...|.|++...|
T Consensus 94 ~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~~l~~~~~~~~~~----l~~~I~~L~~~GgT~l~~aL 166 (464)
T 4fx5_A 94 RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGGQLLRADYQSRAA----AKEAVGRLHANGGTAMGRWL 166 (464)
T ss_dssp THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSSSCEECSHHHHHH----HHHHHHTCCCCSCCCHHHHH
T ss_pred CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCcccccCCHHHHHH----HHHHHHcCCCCCCCcHHHHH
Confidence 4678888889999999898888999999987532 12222100 000112222 33344556678999999999
Q ss_pred HHHHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccC
Q 019939 102 EMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFD 175 (333)
Q Consensus 102 ~~~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld 175 (333)
+.+.+..+.......++++||||..++. ....+....++....+.|..||||+ .+.+.|+++-
T Consensus 167 ~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 167 AQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp HHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHH
Confidence 9999988765455678999999997741 1223344444566789999999995 4666676664
No 76
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.43 E-value=0.00029 Score=61.64 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhh---hccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCce-eecCCCChHHHH
Q 019939 26 PYEQAISIIGKTL---SSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPII 101 (333)
Q Consensus 26 ~Y~~ai~~i~~vl---~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v-~l~gpt~fapvI 101 (333)
.++.+...+..++ ..++.+-.+-++.|+..... ++.+. .+.-...+.+.++-...-+.. ...|.|+....|
T Consensus 32 ~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~---~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL 106 (223)
T 1q0p_A 32 NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKI---WVKVS--EADSSNADWVTKQLNEINYEDHKLKSGTNTKKAL 106 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEE---EECTT--SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccce---eeccc--cCCCCCHHHHHHHHHhcccccccCCCCccHHHHH
Confidence 3555555555554 45555668999999886431 22221 122223455554443322211 247999999999
Q ss_pred HHHHHHHHhcC--------CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHH----------hcCCCeEEEEEec
Q 019939 102 EMAITIVEHSG--------GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK----------ASEYPLSIILVGV 163 (333)
Q Consensus 102 ~~~~~~~~~~~--------~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~----------AS~~PlSii~VGv 163 (333)
+.+.+...... ..-.++++||||..+... +.....+.+.+ +.+..+-|..|||
T Consensus 107 ~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igv 177 (223)
T 1q0p_A 107 QAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGV 177 (223)
T ss_dssp HHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS---------CTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEEC
T ss_pred HHHHHHhhccccccccccccCCeEEEEECCCCCCCCC---------ChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEe
Confidence 99998875321 245789999999877311 12344444433 3456789999999
Q ss_pred cc-CCCCcccccC
Q 019939 164 GD-GPWDMMREFD 175 (333)
Q Consensus 164 Gd-~~f~~m~~ld 175 (333)
|+ .+.+.|+++-
T Consensus 178 G~~~~~~~L~~iA 190 (223)
T 1q0p_A 178 GPLVNQVNINALA 190 (223)
T ss_dssp SSCCCHHHHHHHS
T ss_pred cCcCCHHHHHHHh
Confidence 96 4556677665
No 77
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.40 E-value=0.00042 Score=59.60 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHhhhhccCC---CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPII 101 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~---d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI 101 (333)
+.++++...+..++..++. +-.+-++.|+.... .+++++. ....+.+.++... ++. .+|.|+....|
T Consensus 21 ~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~----~~~~~~~~~~i~~-l~~--~~g~T~~~~aL 90 (189)
T 1atz_A 21 SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV----VPEKAHLLSLVDV-MQR--EGGPSQIGDAL 90 (189)
T ss_dssp HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC----CCCHHHHHHHHHT-CCC--CCCCCCHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC----CCCHHHHHHHHHh-CcC--CCCcchHHHHH
Confidence 5678888888888888762 24799999987532 2334321 1245555554433 222 36899999999
Q ss_pred HHHHHHHHhc-----CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccC
Q 019939 102 EMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFD 175 (333)
Q Consensus 102 ~~~~~~~~~~-----~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld 175 (333)
+.+.+..... .....+++|||||..++. ..+..+.+. +..+-|..||||+ .+-+.|+.+-
T Consensus 91 ~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~~~~~~~---~~gi~v~~igvG~~~~~~~L~~iA 156 (189)
T 1atz_A 91 GFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDAAADAAR---SNRVTVFPIGIGDRYDAAQLRILA 156 (189)
T ss_dssp HHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHHHHHHHH---HTTEEEEEEEESSSSCHHHHHHHT
T ss_pred HHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHHHHHHHH---HCCCEEEEEEcCCcCCHHHHHHHH
Confidence 9999876532 224577888999987651 344444444 4678999999997 4544555554
No 78
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.39 E-value=0.00076 Score=59.69 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cC-CCChHHHH
Q 019939 27 YEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPII 101 (333)
Q Consensus 27 Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~g-pt~fapvI 101 (333)
++++...+..++..++ ++-.+-++.|+.... .+++++ + ....+.++++- ..+.. +| .|+....|
T Consensus 38 ~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~--~--~~~~~~~~~~i----~~l~~~gG~~T~~~~aL 106 (223)
T 2b2x_A 38 WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN--K--YSSTEEVLVAA----NKIVQRGGRQTMTALGI 106 (223)
T ss_dssp HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTT--T--CCSHHHHHHHH----TTCCCCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecC--C--CCCHHHHHHHH----HhhhccCCCCccHHHHH
Confidence 7888888888888886 567899999987532 233432 1 23455555433 33433 45 49999999
Q ss_pred HHHHHH-HHh----cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC
Q 019939 102 EMAITI-VEH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG 166 (333)
Q Consensus 102 ~~~~~~-~~~----~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~ 166 (333)
+.+.+. ... ......++++||||..++. ....+++..+.+..+-|..||||+.
T Consensus 107 ~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~------------~~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 107 DTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------YRLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp HHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG------------GGHHHHHHHHHTTTEEEEEEEECGG
T ss_pred HHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------ccHHHHHHHHHHCCCEEEEEEecCc
Confidence 999876 221 1234678999999998762 1233344445567899999999963
No 79
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.36 E-value=0.00085 Score=58.84 Aligned_cols=116 Identities=17% Similarity=0.276 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cC-CCChHHHH
Q 019939 27 YEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPII 101 (333)
Q Consensus 27 Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~g-pt~fapvI 101 (333)
++.+...+..++..++ ++-.+-++.|+.... .++++. + ....+.++++-. .+.. +| .|+....|
T Consensus 23 ~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~--~--~~~~~~~~~~i~----~l~~~~G~~T~~~~aL 91 (213)
T 1pt6_A 23 WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN--K--YSSTEEVLVAAK----KIVQRGGRQTMTALGT 91 (213)
T ss_dssp HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTT--T--CSSHHHHHHHHH----TCCCCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEecc--c--cCCHHHHHHHHH----hccCCCCCcccHHHHH
Confidence 7777777888888776 567899999987532 233431 1 234555555433 2332 46 49999999
Q ss_pred HHHHHHH-Hh----cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 102 EMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 102 ~~~~~~~-~~----~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
+.+.+.. +. ......++++||||..++. ....+++..+.+..+-|..||||+
T Consensus 92 ~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------~~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 92 DTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------HRLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp HHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------HHHHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------ccHHHHHHHHHHCCCEEEEEEecc
Confidence 9998752 21 1234678999999998761 123344444555688999999996
No 80
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.34 E-value=0.00051 Score=60.04 Aligned_cols=130 Identities=10% Similarity=0.163 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cC-CCChHH
Q 019939 25 NPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAP 99 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~g-pt~fap 99 (333)
+.++++...+..++..|+ ++-.+-++.|+.... ..|+|+. ....+.+.++-. .+.. +| .|+...
T Consensus 29 ~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~----~~~~~~~~~~i~----~l~~~gg~~T~~~~ 97 (202)
T 1ijb_A 29 AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKD----RKRPSELRRIAS----QVKYAGSQVASTSE 97 (202)
T ss_dssp HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTC----CCCHHHHHHHHH----TCCCCCBSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCC----CCCHHHHHHHHH----hCcCCCCCcCcHHH
Confidence 568888888999999887 445899999987532 2344431 123444444332 2332 45 499999
Q ss_pred HHHHHHHHH-Hhc--CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc-CCCCcccccC
Q 019939 100 IIEMAITIV-EHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFD 175 (333)
Q Consensus 100 vI~~~~~~~-~~~--~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd-~~f~~m~~ld 175 (333)
.|+.+.+.. .+. .....++++||||..++. ..+...+++.++.+..+-|..||||+ .+.+.|+.+-
T Consensus 98 aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~----------~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA 167 (202)
T 1ijb_A 98 VLKYTLFQIFSKIDRPEASRIALLLMASQEPQR----------MSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIE 167 (202)
T ss_dssp HHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG----------GCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc----------chHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHh
Confidence 999987543 211 234678999999987641 01123333344445689999999996 4556666653
No 81
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.19 E-value=0.0001 Score=63.54 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhhcc-CCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCcee-ecCCCChHHHHHH
Q 019939 26 PYEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEM 103 (333)
Q Consensus 26 ~Y~~ai~~i~~vl~~y-D~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~-l~gpt~fapvI~~ 103 (333)
.++.+...+-.++..+ .++-.+-++.|+.... .+++++. ... .+...+.+..+. ..|.|+....|+.
T Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~-------~~~-~~~~~~~i~~l~~~~g~T~~~~al~~ 94 (198)
T 1n3y_A 26 NFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE-------FRR-SSNPLSLLASVHQLQGFTYTATAIQN 94 (198)
T ss_dssp HHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHH-------HHH-CSSGGGGGTTCCCCCSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCc-------cCC-HHHHHHHHhcCcCCCCCchHHHHHHH
Confidence 5678888888888888 5777899999998632 1222210 000 011222333433 5799999999999
Q ss_pred HHHH-HHhc----CCceEEEEEEecCccc-cCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC-----CCccc
Q 019939 104 AITI-VEHS----GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-----WDMMR 172 (333)
Q Consensus 104 ~~~~-~~~~----~~~y~vLlIiTDG~i~-d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~-----f~~m~ 172 (333)
+.+. .... .....++++||||..+ +.. +..+. +..+.+..+.|..||||+.. ...|+
T Consensus 95 a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~---------~~~~~---~~~~~~~gi~i~~igvG~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 95 VVHRLFHASYGARRDAAKILIVITDGKKEGDSL---------DYKDV---IPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp HHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS---------CHHHH---HHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred HHHHHhCcccCCCCCCceEEEEECCCCCCCCcc---------cHHHH---HHHHHHCCCEEEEEEccccccccccHHHHH
Confidence 9844 2321 2346789999999887 311 12333 44445667889999999753 45555
Q ss_pred ccC
Q 019939 173 EFD 175 (333)
Q Consensus 173 ~ld 175 (333)
++-
T Consensus 163 ~iA 165 (198)
T 1n3y_A 163 DIA 165 (198)
T ss_dssp HHS
T ss_pred HHH
Confidence 554
No 82
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.18 E-value=0.00017 Score=57.15 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=32.2
Q ss_pred eecccccCCcc--ceeCCCCccchhhhh-----cCCCCCCcccccccc
Q 019939 289 VCPICLTDPKD--MAFGCGHQTCCGCGQ-----DLDLCPICRSFIQTR 329 (333)
Q Consensus 289 ~C~ICl~~~~~--~~l~CgH~fC~~C~~-----~~~~CP~CR~~i~~~ 329 (333)
-|.+|--..+. .++||.|.||.+|+. +.+.||.|+.+|..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47777766655 456999999999994 346899999998764
No 83
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.12 E-value=9.9e-05 Score=63.42 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHhhhhcc-CCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 25 NPYEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~y-D~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
+..+.+...+..++... ..+..+-++.|+..... .++++. .+.+.+.+. +..+...|.|++...|+.
T Consensus 21 ~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~--~~~~~~------~~~~~~~~~----i~~l~~~g~T~~~~al~~ 88 (189)
T 2x31_A 21 ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ--VLLQPS------RSLTQTKRQ----LQGLPGGGGTPLASGMEM 88 (189)
T ss_dssp --CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC--BCTTTC------SCHHHHHHH----HHHCCCCBCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce--EecCCC------CCHHHHHHH----HhcCCCCCCCCHHHHHHH
Confidence 45555666666666444 67778999999963221 122211 244444332 234556799999999999
Q ss_pred HHHHHHhcC--CceEEEEEEecCccccCCCcccCcCchh-HHHHHHHHHHhcCCCeEEEEEecccCCCCcccccC
Q 019939 104 AITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQ-EKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 175 (333)
Q Consensus 104 ~~~~~~~~~--~~y~vLlIiTDG~i~d~~~~~~~~~~~~-~~~t~~aI~~AS~~PlSii~VGvGd~~f~~m~~ld 175 (333)
+.+..++.. ....++++||||..++..+-.+. .++ .++..+++..+.+..+.+..||+|+.+...|+++-
T Consensus 89 a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 89 AMVTAKQARSRGMTPTIALLTDGRGNIALDGTAN--RELAGEQATKVARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp HHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHH--HGGGTCCCEEEEECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHhccCCCCceEEEEECCCCCCCCCCcccc--ccchhHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 999876542 23568999999987752110000 000 00111222233345678888999988767777665
No 84
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.06 E-value=0.00017 Score=52.03 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=36.1
Q ss_pred CCeecccccCCcc-cee-CCCCccchhhhhcC----CCCCCccccccc
Q 019939 287 NHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~----~~CP~CR~~i~~ 328 (333)
...|+||++.+.+ ++. +|||.|++.|+.++ ..||++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 3689999999999 777 89999999999755 479999999865
No 85
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.06 E-value=0.0028 Score=65.63 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCcee-----ecCCCC
Q 019939 25 NPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLR-----LAGPTS 96 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~-----l~gpt~ 96 (333)
+.++++.+.+..++..++ +.-.|-++.|+.... .++.|+.. .-...+.++++. ..+. ..|.|+
T Consensus 259 ~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~~--~~~~~~~~~~~i----~~l~~~~~~~~ggT~ 329 (741)
T 3hrz_D 259 SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSEA--DSSNADWVTKQL----NEINYEDHKLKSGTN 329 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTSG--GGGCHHHHHHHH----TTCCGGGGSSSCCCC
T ss_pred cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeeccc--CCcCHHHHHHHH----HhcccccccCCCChH
Confidence 446666666666665554 445799999987532 22333321 112444455443 3444 689999
Q ss_pred hHHHHHHHHHHHHh--------cCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHH----------hcCCCeEE
Q 019939 97 FAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK----------ASEYPLSI 158 (333)
Q Consensus 97 fapvI~~~~~~~~~--------~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~----------AS~~PlSi 158 (333)
....|+.|.+.... ....-.++++||||..+.-. +....++.|.+ +.+..+.|
T Consensus 330 ~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~---------~p~~~~~~i~~~~~~~~~a~~~~~~gi~i 400 (741)
T 3hrz_D 330 TKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DPITVIDEIRDLLYIGKDRKNPREDYLDV 400 (741)
T ss_dssp HHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS---------CTHHHHHHHHHHTTCSSCTTCCCGGGEEE
T ss_pred HHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC---------CchHHHHHHHHHhhcccccccccccCeeE
Confidence 99999999988721 11235789999999766311 23455555553 34567899
Q ss_pred EEEeccc-CCCCcccccC
Q 019939 159 ILVGVGD-GPWDMMREFD 175 (333)
Q Consensus 159 i~VGvGd-~~f~~m~~ld 175 (333)
..||||+ .+.+.|++|-
T Consensus 401 ~~igvG~~~~~~~L~~ia 418 (741)
T 3hrz_D 401 YVFGVGPLVNQVNINALA 418 (741)
T ss_dssp EEEECSSSCCHHHHHHHS
T ss_pred EEEeCCCcCCHHHHHHHh
Confidence 9999997 5666677765
No 86
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.04 E-value=0.0033 Score=54.44 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cC-CCChHHHH
Q 019939 27 YEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPII 101 (333)
Q Consensus 27 Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~g-pt~fapvI 101 (333)
++++...+..++..++ ++-.+-++.|+.... .+++|+ + ....+.++++-.. +.. .| .|+....|
T Consensus 22 ~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~--~--~~~~~~~~~~i~~----l~~~~G~~T~~~~al 90 (200)
T 1v7p_C 22 WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLN--T--YKTKEEMIVATSQ----TSQYGGDLTNTFGAI 90 (200)
T ss_dssp HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTT--T--CSSHHHHHHHHHH----CCCCCCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCC--C--cCCHHHHHHHHHh----hhccCCCCCcHHHHH
Confidence 7888888888888887 566899999987532 234443 1 2355566554443 333 35 69999999
Q ss_pred HHHHHH-HHh-c---CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEeccc
Q 019939 102 EMAITI-VEH-S---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 165 (333)
Q Consensus 102 ~~~~~~-~~~-~---~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd 165 (333)
+.+.+. ... . .....++++||||..++.. +..+ ++..+.+..+.|..||||+
T Consensus 91 ~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~---------~~~~---~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 91 QYARKYAYSAASGGRRSATKVMVVVTDGESHDGS---------MLKA---VIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp HHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG---------GHHH---HHHHHHHTTEEEEEEEECH
T ss_pred HHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc---------cHHH---HHHHHHHCCCEEEEEEecc
Confidence 999885 322 1 2346789999999987621 1233 3444445688999999963
No 87
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.03 E-value=0.00083 Score=66.65 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHhhhhcc---CCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceee-cCCCChHHH
Q 019939 25 NPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRL-AGPTSFAPI 100 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~y---D~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l-~gpt~fapv 100 (333)
..+++|.+.+..++..+ ..+-.+-++.|+.... .++++. .+.-...+.+.++-.+.-..... .|.|+....
T Consensus 25 ~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~a 99 (509)
T 2odp_A 25 NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLMSVL--NDNSRDMTEVISSLENANYKDHENGTGTNTYAA 99 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEECTT--SGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeEecc--CCCCCCHHHHHHHHHhcccccCCCCCCccHHHH
Confidence 45677777777777776 6777899999987543 223332 11122455555443332211111 388999999
Q ss_pred HHHHHHHHHhc----C-------CceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHh------cCCCeEEEEEec
Q 019939 101 IEMAITIVEHS----G-------GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA------SEYPLSIILVGV 163 (333)
Q Consensus 101 I~~~~~~~~~~----~-------~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~A------S~~PlSii~VGv 163 (333)
|+.+.+..+.. + ..-.++++||||..++.. +..+..+.+.+. .+..+-|..|||
T Consensus 100 L~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~i~~iGv 170 (509)
T 2odp_A 100 LNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG---------SPKTAVDHIREILNINQKRNDYLDIYAIGV 170 (509)
T ss_dssp HHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS---------CTHHHHHHHHHHTTCCSTTGGGEEEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC---------ChhHHHHHHHHHhhccccccCceEEEEEEc
Confidence 99998876431 1 134689999999877522 134555555542 266788999999
Q ss_pred cc--CCCCcccccCC
Q 019939 164 GD--GPWDMMREFDD 176 (333)
Q Consensus 164 Gd--~~f~~m~~ld~ 176 (333)
|+ .+.+.|+++-+
T Consensus 171 G~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 171 GKLDVDWRELNELGS 185 (509)
T ss_dssp SSSCCCHHHHHHHSC
T ss_pred CCCcccHHHHHhhcc
Confidence 98 57778887764
No 88
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.93 E-value=0.00016 Score=62.44 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHhhhhccCC-CCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCcee-ecCCCChHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIE 102 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~-d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~-l~gpt~fapvI~ 102 (333)
..++++...+..++..++. +-.+-++.|+.... .+|+++... ....+. +.+..+. ..|.|+....|+
T Consensus 21 ~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~-~~~~~~-------~~i~~l~~~~g~T~~~~aL~ 89 (194)
T 1mf7_A 21 HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQ-NNPNPR-------SLVKPITQLLGRTHTATGIR 89 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHH-HSCCHH-------HHHTTCCCCCSCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcC-CHHHHH-------HHHHhCcCCCCCchHHHHHH
Confidence 3577888888888888863 45799999987542 223332100 011222 2233444 479999999999
Q ss_pred HHHHHH-Hh-c---CCceEEEEEEecCccc-cCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC-----CCcc
Q 019939 103 MAITIV-EH-S---GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-----WDMM 171 (333)
Q Consensus 103 ~~~~~~-~~-~---~~~y~vLlIiTDG~i~-d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~-----f~~m 171 (333)
.+.+.. .. . .....++++||||..+ |..+ ..+. +.++.+..+.|..||||+.. .+.|
T Consensus 90 ~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~---------~~~~---~~~~~~~gi~v~~igvG~~~~~~~~~~~L 157 (194)
T 1mf7_A 90 KVVRELFNITNGARKNAFKILVVITDGEKFGDPLG---------YEDV---IPEADREGVIRYVIGVGDAFRSEKSRQEL 157 (194)
T ss_dssp HHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------GGGT---HHHHHHTTEEEEEEEESGGGCSHHHHHHH
T ss_pred HHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh---------hHHH---HHHHHHCCCEEEEEEecccccccccHHHH
Confidence 998643 21 1 1246789999999987 4211 1233 33344568999999999753 3555
Q ss_pred cccC
Q 019939 172 REFD 175 (333)
Q Consensus 172 ~~ld 175 (333)
+++-
T Consensus 158 ~~iA 161 (194)
T 1mf7_A 158 NTIA 161 (194)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 5554
No 89
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=96.58 E-value=0.0073 Score=59.44 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHhhhhc---cCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCce-eecCCCChHHH
Q 019939 25 NPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPI 100 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~---yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v-~l~gpt~fapv 100 (333)
+.++.+...+..++.. +..+-.+-++.|+.... .++.+. .+.-...+.+.++-.+.-... ...|.|+....
T Consensus 17 ~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~a 91 (497)
T 1rrk_A 17 SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS--EADSSNADWVTKQLNEINYEDHKLKSGTNTKKA 91 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTT--SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeeccc--cccccCHHHHHHHHHhCcCccccccCccCHHHH
Confidence 4566666666666664 45567899999997532 122221 122235566665554433221 25689999999
Q ss_pred HHHHHHHHHhc--------CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHh----------cCCCeEEEEEe
Q 019939 101 IEMAITIVEHS--------GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA----------SEYPLSIILVG 162 (333)
Q Consensus 101 I~~~~~~~~~~--------~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~A----------S~~PlSii~VG 162 (333)
|+.+.+..... .....++++||||..++.. +..++.+.+.+. .+..+-|..||
T Consensus 92 l~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ig 162 (497)
T 1rrk_A 92 LQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFG 162 (497)
T ss_dssp HHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEE
T ss_pred HHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------ChhHHHHHHHHHhhhhcccccchhcCeeEEEec
Confidence 99999887321 1235789999999877421 235555666554 12278899999
Q ss_pred ccc-CCCCcccccCC
Q 019939 163 VGD-GPWDMMREFDD 176 (333)
Q Consensus 163 vGd-~~f~~m~~ld~ 176 (333)
||+ .+.+.|++|-+
T Consensus 163 vG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 163 VGPLVNQVNINALAS 177 (497)
T ss_dssp CSSSCCHHHHHHHSC
T ss_pred CCCccCHHHHHHHhc
Confidence 997 46666776653
No 90
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.0079 Score=45.01 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=35.4
Q ss_pred CCCCeecccccCCcc-cee-CCCCccchhhhhcC------CCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~~~~------~~CP~CR~~i~~~ 329 (333)
+....|.||.+.+.. ..- .|+|.|-..|+.+. ..||+||......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 455799999998876 222 89999999999632 5899999987643
No 91
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=95.83 E-value=0.0072 Score=52.47 Aligned_cols=122 Identities=11% Similarity=0.244 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHhhhhccC---CCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecC-CCChHHH
Q 019939 25 NPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAG-PTSFAPI 100 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD---~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~g-pt~fapv 100 (333)
+.++++.+.+-.++..|+ ++-.|-++.|+.... ..|+|+. ....+.++++-.+. +. .+| .|+....
T Consensus 37 ~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~----~~~~~~~~~~i~~l-~~--~gg~~T~~~~a 106 (199)
T 3zqk_A 37 ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE----AQSKGDILQRLREI-RY--QGGNRTNTGLA 106 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS----CCCHHHHHHHHHHC-CC--CCCSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC----cCCHHHHHHHHHhC-cC--CCCCcChHHHH
Confidence 567888888888888885 566899999998543 2344431 23455565554432 21 245 4999999
Q ss_pred HHHHHHHH-H-hc---CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecc-cCCCCccccc
Q 019939 101 IEMAITIV-E-HS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVG-DGPWDMMREF 174 (333)
Q Consensus 101 I~~~~~~~-~-~~---~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvG-d~~f~~m~~l 174 (333)
|+.+.+.. . .. .....++++||||...|.+ + ++ ...+.|.-|||| +.+.+.|+++
T Consensus 107 L~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v-----------~-------~~-~~~v~v~~iGiG~~~~~~~L~~i 167 (199)
T 3zqk_A 107 LRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEI-----------K-------RL-PGDIQVVPIGVGPNANVQELERI 167 (199)
T ss_dssp HHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCC-----------C-------CC-CTTEEEEEEEESTTCCHHHHHHH
T ss_pred HHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHH-----------H-------HH-hCCCEEEEEEcCCCCCHHHHHHH
Confidence 99887642 1 11 1235789999999877621 1 11 256889999999 6677777777
Q ss_pred C
Q 019939 175 D 175 (333)
Q Consensus 175 d 175 (333)
-
T Consensus 168 A 168 (199)
T 3zqk_A 168 G 168 (199)
T ss_dssp H
T ss_pred h
Confidence 5
No 92
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.62 E-value=0.083 Score=54.19 Aligned_cols=145 Identities=9% Similarity=0.188 Sum_probs=91.1
Q ss_pred CCccccCC--CCCHHHHHHHHHHhhhhc---cCCCCccceEEeCCCCCC----CCcccccCC-CCCCCCCHHHHHHHHHH
Q 019939 15 RSLHHIGD--DQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSFYP-DEKFCNGFEEVLRRYRE 84 (333)
Q Consensus 15 ~sLH~~~~--~~N~Y~~ai~~i~~vl~~---yD~d~~ip~~GFG~~~~~----~~~vf~~~~-~~~~~~G~~gvl~~Y~~ 84 (333)
.|++..+. ..+..+.|++.+..+++. ......|-++.||+..+. ..+++-+.+ +.+ +.+ .++..+.
T Consensus 46 ~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~---~~~-~ik~l~~ 121 (609)
T 1jey_A 46 KAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNP---GAK-RILELDQ 121 (609)
T ss_dssp GGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECC---CHH-HHHHHHT
T ss_pred HHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCC---CHH-HHHHHHH
Confidence 45655442 578999999999999885 345568999999987642 122322221 111 222 1222222
Q ss_pred hCC---------ceeecCCCChHHHHHHHHHHHHhcCCc--eEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcC
Q 019939 85 LVP---------HLRLAGPTSFAPIIEMAITIVEHSGGQ--YHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASE 153 (333)
Q Consensus 85 ~~~---------~v~l~gpt~fapvI~~~~~~~~~~~~~--y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~ 153 (333)
.+. .+.....|.+..+|.-++++.+....+ =-++++||||.-.- +.-+..+.....+...+.+
T Consensus 122 l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~------~~~~~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 122 FKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPH------GNDSAKASRARTKAGDLRD 195 (609)
T ss_dssp TSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTT------TTCHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCC------CCchHHHHHHHHHHHHHHh
Confidence 211 011146899999999999988765333 24789999997531 1112223466777788889
Q ss_pred CCeEEEEEecccCC-CC
Q 019939 154 YPLSIILVGVGDGP-WD 169 (333)
Q Consensus 154 ~PlSii~VGvGd~~-f~ 169 (333)
+-|.|.+||||..+ |+
T Consensus 196 ~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 196 TGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp HTEEEEEEEBCCTTCCC
T ss_pred cCcEEEEEecCCCCccc
Confidence 99999999999653 55
No 93
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=95.53 E-value=0.065 Score=45.47 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHhhhhccCCCC-ccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 25 NPYEQAISIIGKTLSSFDEDN-LIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 25 N~Y~~ai~~i~~vl~~yD~d~-~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
..++++...+..++..++.++ .+-+..|+..... +|+|+... .-..+..++ ..++. +.|.|+....|+.
T Consensus 18 ~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~---~~~l~~~~-~~~~~~~~~----~~i~~--~~g~T~~~~aL~~ 87 (179)
T 1mjn_A 18 DEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKT---EFDFSDYV-KRKDPDALL----KHVKH--MLLLTNTFGAINY 87 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEE---EECHHHHH-HHCCHHHHH----TTCCC--CCBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeE---EEcCcccC-CHHHHHHHH----Hhccc--CCCCChHHHHHHH
Confidence 357788888888888886654 7999999875431 23332100 001222222 23333 3589999999999
Q ss_pred HHHHH-Hh-c---CCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCC-----Ccccc
Q 019939 104 AITIV-EH-S---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPW-----DMMRE 173 (333)
Q Consensus 104 ~~~~~-~~-~---~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f-----~~m~~ 173 (333)
+.+.. .. . .....++++||||..+|..+ + .+ ..-+-|.-||||+..- +.|+.
T Consensus 88 a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-----------~~--~~~i~i~~igvG~~~~~~~~~~~L~~ 149 (179)
T 1mjn_A 88 VATEVFREELGARPDATKVLIIITDGEATDSGN-----I-----------DA--AKDIIRYIIGIGKHFQTKESQETLHK 149 (179)
T ss_dssp HHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C-----------GG--GTTSEEEEEEESGGGCSHHHHHTTGG
T ss_pred HHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h-----------HH--HCCCEEEEEEccccccccccHHHHHH
Confidence 98642 21 1 23467899999999876221 0 01 2357788899997532 45555
Q ss_pred cC
Q 019939 174 FD 175 (333)
Q Consensus 174 ld 175 (333)
+-
T Consensus 150 iA 151 (179)
T 1mjn_A 150 FA 151 (179)
T ss_dssp GS
T ss_pred Hh
Confidence 54
No 94
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.31 E-value=0.0045 Score=59.35 Aligned_cols=45 Identities=22% Similarity=0.528 Sum_probs=34.4
Q ss_pred CCCCeecccccCCcc-ce--------eCCCCccchhhhhcC---------------CCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKD-MA--------FGCGHQTCCGCGQDL---------------DLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~--------l~CgH~fC~~C~~~~---------------~~CP~CR~~i~~~ 329 (333)
+...+|.||++...+ .. ..|||.|-..|+.++ ..||.||++|...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999998765 22 269999999999532 2699999998753
No 95
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=94.83 E-value=0.16 Score=51.56 Aligned_cols=135 Identities=15% Similarity=0.199 Sum_probs=86.1
Q ss_pred CCccccCC-CCCHHHHHHHHHHhhhh---ccCCCCccceEEeCCCCCCC--------CcccccCCCCCCCCCHHHHHHHH
Q 019939 15 RSLHHIGD-DQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHD--------QEVFSFYPDEKFCNGFEEVLRRY 82 (333)
Q Consensus 15 ~sLH~~~~-~~N~Y~~ai~~i~~vl~---~yD~d~~ip~~GFG~~~~~~--------~~vf~~~~~~~~~~G~~gvl~~Y 82 (333)
.|++.-+. ..|..+.|.+.+..+++ .......+-++.||+..+.. .+++.+.+-. ... ..+++..
T Consensus 18 ~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~--~~~-~~~l~~l 94 (565)
T 1jey_B 18 FTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLM--LPD-FDLLEDI 94 (565)
T ss_dssp GGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEE--CCC-HHHHHHH
T ss_pred hHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCC--CCC-HHHHHHH
Confidence 34544333 56899999999999998 46677799999999865311 0111111000 011 1334433
Q ss_pred HHhCCceeec-CCCChHHHHHHHHHHHHhc--CCce--EEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeE
Q 019939 83 RELVPHLRLA-GPTSFAPIIEMAITIVEHS--GGQY--HVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLS 157 (333)
Q Consensus 83 ~~~~~~v~l~-gpt~fapvI~~~~~~~~~~--~~~y--~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlS 157 (333)
.. .+..+ +.|.+...|..+++..++. ..++ -.+++||||+-.-. .....+++..+.+.-+.
T Consensus 95 ~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~-----------~~~~~~~a~~l~~~gI~ 160 (565)
T 1jey_B 95 ES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFS-----------KSQLDIIIHSLKKCDIS 160 (565)
T ss_dssp HT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCC-----------CTTHHHHHHHHHHTTEE
T ss_pred Hh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCC-----------HHHHHHHHHHHHhcCcE
Confidence 33 23333 7899999999999988665 3334 48999999975420 12445566777788899
Q ss_pred EE-EEecccC
Q 019939 158 II-LVGVGDG 166 (333)
Q Consensus 158 ii-~VGvGd~ 166 (333)
|. +||+|..
T Consensus 161 i~~vig~g~~ 170 (565)
T 1jey_B 161 LQFFLPFSLG 170 (565)
T ss_dssp EEEEESSCCC
T ss_pred EEEEeccCCC
Confidence 99 8999853
No 96
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=94.72 E-value=0.021 Score=62.59 Aligned_cols=128 Identities=16% Similarity=0.293 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHhhhhccCCC-CccceEEeCCCCCCCCcccccCC-CCCCCCCHHHHHHHHHHhCCce-eecCCCChHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDED-NLIPCFGFGDASTHDQEVFSFYP-DEKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPI 100 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~d-~~ip~~GFG~~~~~~~~vf~~~~-~~~~~~G~~gvl~~Y~~~~~~v-~l~gpt~fapv 100 (333)
.+.++++.+.+..++..|+.+ -.|-+..|+.... .+|+|+. .+. ..+. +.+..+ .+.|.|+.+..
T Consensus 145 ~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~~--~~l~-------~ai~~i~~~gG~T~~g~A 212 (1095)
T 3k6s_A 145 SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRRS--SNPL-------SLLASVHQLQGFTYTATA 212 (1095)
T ss_dssp SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHSC--SCGG-------GGTTTCCCCCSCBCHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCCH--HHHH-------HHHhhhhcccCCChHHHH
Confidence 467899999999999999976 4799999987543 2233321 000 1111 122233 35789999999
Q ss_pred HHHHHHHHH--hc---CCceEEEEEEecCccc-cCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccC-----CCC
Q 019939 101 IEMAITIVE--HS---GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDG-----PWD 169 (333)
Q Consensus 101 I~~~~~~~~--~~---~~~y~vLlIiTDG~i~-d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~-----~f~ 169 (333)
|+.|.+..- .. .....++++||||..+ |.. +..+.++.+ .+.-+-|..||||+. +.+
T Consensus 213 L~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~---------~~~~~a~~~---r~~GI~i~aIGVG~~~~~~~d~~ 280 (1095)
T 3k6s_A 213 IQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL---------DYKDVIPMA---DAAGIIRYAIGVGLAFQNRNSWK 280 (1095)
T ss_dssp HHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS---------CHHHHHHHH---HHHCEEECCEEBSSGGGSTTSSH
T ss_pred HHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch---------hHHHHHHHH---HHCCCEEEEEecccccccccCHH
Confidence 999977542 11 1235799999999984 311 133444444 444788888999986 666
Q ss_pred cccccC
Q 019939 170 MMREFD 175 (333)
Q Consensus 170 ~m~~ld 175 (333)
.|+++-
T Consensus 281 eL~~IA 286 (1095)
T 3k6s_A 281 ELNDIA 286 (1095)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 666665
No 97
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.37 E-value=0.02 Score=40.83 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCCeecccccCCcc-ceeCCC--C---ccchhhhhcC------CCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAFGCG--H---QTCCGCGQDL------DLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l~Cg--H---~fC~~C~~~~------~~CP~CR~~i~~ 328 (333)
++...|.||++...+ .+.||. | .|-..|+.+. ..||+||..+.-
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456799999987555 445865 4 5666898643 589999988753
No 98
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.85 E-value=0.11 Score=40.52 Aligned_cols=51 Identities=25% Similarity=0.633 Sum_probs=38.9
Q ss_pred CCCCCCCCeecccccCCccceeCC-CCccchhhhhcC----CCCCCccccccccccc
Q 019939 281 ASSTSDNHVCPICLTDPKDMAFGC-GHQTCCGCGQDL----DLCPICRSFIQTRIKL 332 (333)
Q Consensus 281 ~~~~~~~~~C~ICl~~~~~~~l~C-gH~fC~~C~~~~----~~CP~CR~~i~~~i~~ 332 (333)
....-...-|..|+-..+. .+.| -|..|..|+..+ ..||+|..++..++++
T Consensus 22 d~s~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CccccCcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3445566789999977664 3445 588999999866 4799999999888765
No 99
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=93.35 E-value=0.39 Score=48.27 Aligned_cols=99 Identities=11% Similarity=0.164 Sum_probs=63.9
Q ss_pred CccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEecC
Q 019939 45 NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADG 124 (333)
Q Consensus 45 ~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~~~~~~~~~~~~y~vLlIiTDG 124 (333)
..+-++.|++... ..++.++ .++..+++.-. .+ .+|.|+++..|..+.+. ....-++++||||
T Consensus 408 d~vglv~Fs~~~~----~~~~t~~----~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg 470 (538)
T 1yvr_A 408 KDSHMVAFSDEML----PCPITVN----MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDC 470 (538)
T ss_dssp SSEEEEEESSSEE----CCSCCTT----SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECC
T ss_pred CceEEEEECCCce----EcCCCCc----ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCC
Confidence 3689999986321 1222222 24666665433 22 57899999998888665 2335689999999
Q ss_pred ccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCCC
Q 019939 125 QVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPW 168 (333)
Q Consensus 125 ~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~f 168 (333)
..++. .. +..+.++.+.+..+.++.+++||+|....
T Consensus 471 ~~~~g------~~--~~~~~l~~~~~~~~~~v~l~~igig~~~~ 506 (538)
T 1yvr_A 471 ETNVE------DV--HPATALKQYREKMGIPAKLIVCAMTSNGF 506 (538)
T ss_dssp CCCSS------SC--CHHHHHHHHHHHHTCCCEEEEEECSSSSE
T ss_pred CCCCC------CC--CHHHHHHHHHHHhCCCcEEEEEEecCCCC
Confidence 87641 11 13456666676667789999999998654
No 100
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.72 E-value=0.06 Score=41.68 Aligned_cols=30 Identities=23% Similarity=0.637 Sum_probs=24.2
Q ss_pred CCCeecccccC-Ccc-ce--eCCCCccchhhhhc
Q 019939 286 DNHVCPICLTD-PKD-MA--FGCGHQTCCGCGQD 315 (333)
Q Consensus 286 ~~~~C~ICl~~-~~~-~~--l~CgH~fC~~C~~~ 315 (333)
++..|.||.+. +.+ +. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 46889999975 455 55 59999999999975
No 101
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=87.86 E-value=2.6 Score=42.28 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecCCCChHHHHHH
Q 019939 24 QNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEM 103 (333)
Q Consensus 24 ~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~gpt~fapvI~~ 103 (333)
.+..+.| ..++-++..-++ .+-++.|++.... ..+.++ .++.++++. +... .+|.|+++..|+.
T Consensus 386 ~~~~e~A-a~la~~~~r~~d--~v~lv~Fs~~~~~----~~~~~~----~~l~~~l~~---l~~~--~~ggTdi~~~l~~ 449 (535)
T 2nvo_A 386 LTPNMAA-AAMSLIALRTEP--DALTMGFAEQFRP----LGITPR----DTLESAMQK---AQSV--SFGGTDCAQPILW 449 (535)
T ss_dssp CCHHHHH-HHHHHHHHHHSS--EEEEEEEBSSEEE----CCCCTT----CCHHHHHHH---TCCS--SBCCCCTTHHHHH
T ss_pred ccHHHHH-HHHHHHHcCcCC--ceEEEEECCcceE----cCCCcc----hhHHHHHHH---HhhC--CCCCccHHHHHHH
Confidence 4544433 455544443333 5888999874211 112211 456555543 2221 3689999998876
Q ss_pred HHHHHHhcCCceEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC
Q 019939 104 AITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 167 (333)
Q Consensus 104 ~~~~~~~~~~~y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~ 167 (333)
+.+. ...+-++++||||+.... ..+ ..+.++...+..+.++-+++||||...
T Consensus 450 a~~~----~~~~~~vIliTD~~~~~g------~~~--~~~al~~~r~~~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 450 AAQE----RLDVDTFVVYTDNETWAG------QVH--PTVALDQYAQKMGRAPKLIVVGLTATE 501 (535)
T ss_dssp HHHT----TCCCSEEEEEESSCCCCC------SSC--HHHHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred HHHh----cCCCCEEEEEeCCCccCC------CCC--HHHHHHHHHHhhCCCCeEEEEeccCCC
Confidence 6433 344678999999987641 112 345666677666789999999999864
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.58 E-value=1.6 Score=33.00 Aligned_cols=30 Identities=33% Similarity=0.802 Sum_probs=24.6
Q ss_pred CCCCeecccccCCcccee-CC----CCccchhhhh
Q 019939 285 SDNHVCPICLTDPKDMAF-GC----GHQTCCGCGQ 314 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~l-~C----gH~fC~~C~~ 314 (333)
.....|.+|.+...+.-| .| +|.||..|.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 356899999999999654 66 6999999985
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.42 E-value=2 Score=30.44 Aligned_cols=35 Identities=31% Similarity=0.770 Sum_probs=28.1
Q ss_pred CeecccccCCcc-cee---CCCCccchhhhh----cCCCCCCc
Q 019939 288 HVCPICLTDPKD-MAF---GCGHQTCCGCGQ----DLDLCPIC 322 (333)
Q Consensus 288 ~~C~ICl~~~~~-~~l---~CgH~fC~~C~~----~~~~CP~C 322 (333)
..|-.|+..+.+ ..+ .|++.||.+|-. .+.+||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 469999998876 334 789999999974 66799998
No 104
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=74.27 E-value=1.5 Score=39.54 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=32.8
Q ss_pred CCeecccccCCcccee--CCCCccchhhhhcC------CCCCCccccccc
Q 019939 287 NHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~l--~CgH~fC~~C~~~~------~~CP~CR~~i~~ 328 (333)
...|.+|.+....-.. .|+|.|-..|+.+. ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5789999998876333 59999999999642 389999987654
No 105
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=72.58 E-value=2 Score=38.93 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=26.7
Q ss_pred eEEEEEEecCccccCCCcccCcCchhHHHHHHHHHHhcCCCeEEEEEecccCC
Q 019939 115 YHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 167 (333)
Q Consensus 115 y~vLlIiTDG~i~d~~~~~~~~~~~~~~~t~~aI~~AS~~PlSii~VGvGd~~ 167 (333)
--++++||||.-+. |. +-. ++...|.+.-+-|-.||||+.+
T Consensus 10 ~k~iillTDG~~~~------g~---~p~---~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 10 IRQILVITDGCSNI------GP---DPV---EAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp EEEEEEEESSCCCS------SS---CHH---HHHHHHHHTTCEEEEEEECCSS
T ss_pred ccEEEEEccCCCCC------CC---CHH---HHHHHHHHCCCEEEEEEecCCc
Confidence 45889999998652 11 122 2333455667899999998653
No 106
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=50.65 E-value=76 Score=33.83 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=30.9
Q ss_pred eeecCCCChHHHHHHHHHHHHh-c-CCceEEEEEEecCcccc
Q 019939 89 LRLAGPTSFAPIIEMAITIVEH-S-GGQYHVLVIIADGQVTR 128 (333)
Q Consensus 89 v~l~gpt~fapvI~~~~~~~~~-~-~~~y~vLlIiTDG~i~d 128 (333)
+...|.|+....|..++++.+. . ...--++++||||..+.
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSE
T ss_pred cccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCc
Confidence 3447899999999999998864 2 13345899999998775
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.56 E-value=20 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCeecccccCCccce-----eCCCCccchhhhh
Q 019939 285 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
.+...|.+|...|.-.. -.||+.||..|..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 34568999998876421 2899999999975
No 108
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.10 E-value=27 Score=25.79 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=18.1
Q ss_pred CCCeecccccCCcccee--CCCCccch
Q 019939 286 DNHVCPICLTDPKDMAF--GCGHQTCC 310 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l--~CgH~fC~ 310 (333)
....|..|.....-+-+ .||..||.
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECS
T ss_pred cCCcChhhCCcccccCeecCCCCEech
Confidence 45689999876544434 68999987
No 109
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.43 E-value=16 Score=32.07 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=21.5
Q ss_pred CCeecccccCCccce-----eCCCCccchhhhh
Q 019939 287 NHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
...|.+|...|.-.. -.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 468999998775421 2799999999975
No 110
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.22 E-value=81 Score=23.93 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCCeecccccCCcc-cee--C--CC-Cccchhhhh------cCCCCCCcccccc
Q 019939 286 DNHVCPICLTDPKD-MAF--G--CG-HQTCCGCGQ------DLDLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l--~--Cg-H~fC~~C~~------~~~~CP~CR~~i~ 327 (333)
+...| +|...... ++. . |. ..|-..|+. ....||.|+..-.
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 44556 99885433 333 4 55 456667774 2358999987543
No 111
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=46.61 E-value=31 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=19.8
Q ss_pred CCCCCCeecccccCCcccee--CCCCccchh
Q 019939 283 STSDNHVCPICLTDPKDMAF--GCGHQTCCG 311 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~~~l--~CgH~fC~~ 311 (333)
.......|..|.....-+.+ .||.+||..
T Consensus 21 ~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp TTCCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred CcccCccchhhcCcccccceEeccCCEeccc
Confidence 34455789999865544334 789999883
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.56 E-value=15 Score=28.13 Aligned_cols=42 Identities=29% Similarity=0.737 Sum_probs=31.0
Q ss_pred CCCeecccccCCc---c-cee----CCCCccchhhhh-----cCCCCCCcccccc
Q 019939 286 DNHVCPICLTDPK---D-MAF----GCGHQTCCGCGQ-----DLDLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~---~-~~l----~CgH~fC~~C~~-----~~~~CP~CR~~i~ 327 (333)
....|.||-+..- + -+| .|+--.|+.|.+ ....||.|....+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4479999998642 2 122 688889999995 3468999998875
No 113
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.43 E-value=3.5 Score=32.15 Aligned_cols=39 Identities=33% Similarity=0.728 Sum_probs=22.5
Q ss_pred CCCeecccccCCccceeCCCCccchhhhhcC---CCCCCcccccc
Q 019939 286 DNHVCPICLTDPKDMAFGCGHQTCCGCGQDL---DLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l~CgH~fC~~C~~~~---~~CP~CR~~i~ 327 (333)
.+..||+|....... =++..|..|.... -.||-|.++++
T Consensus 31 M~~~CP~Cq~eL~~~---g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQD---NGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEE---TTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceec---CCEEECccccchhhccccCcchhhHHH
Confidence 448999999755431 1333455665433 25666666554
No 114
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=42.69 E-value=79 Score=27.68 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHhhhhccCCCCccceEEeCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHhCCceeecC----C-CCh
Q 019939 23 DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAG----P-TSF 97 (333)
Q Consensus 23 ~~N~Y~~ai~~i~~vl~~yD~d~~ip~~GFG~~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~~~~v~l~g----p-t~f 97 (333)
..+..++.+..|..-++.+..+-.+-+-+|-++. ..++++|+ ... +.+.+.+.+...+| | .-|
T Consensus 19 di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT------~d~----~~F~~~v~~~~vsg~~D~PE~g~ 86 (212)
T 2iue_A 19 HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLT------ADS----SQFQRELRKQLVSGKLATPKGQL 86 (212)
T ss_dssp THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEE------SCH----HHHHHHHHTCCCCCCSSSSBCHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcC------CCH----HHHHHHHhhccccCCCCCCchHH
Confidence 3456667777777777777666555444454541 12333332 122 23444444455555 2 233
Q ss_pred HHHHHHHHH--HHHhcCCceEEEEEEecCcccc
Q 019939 98 APIIEMAIT--IVEHSGGQYHVLVIIADGQVTR 128 (333)
Q Consensus 98 apvI~~~~~--~~~~~~~~y~vLlIiTDG~i~d 128 (333)
.-+++.+.. ...... .-.+||++||+..+.
T Consensus 87 dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 87 DAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp HHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred HHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 334443322 122333 568999999998775
No 115
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.78 E-value=5.4 Score=33.58 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=29.5
Q ss_pred CCCeecccccCCcc----cee--CCCCccchhhhhc-----CCCCCCcccc
Q 019939 286 DNHVCPICLTDPKD----MAF--GCGHQTCCGCGQD-----LDLCPICRSF 325 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~~l--~CgH~fC~~C~~~-----~~~CP~CR~~ 325 (333)
++..|.+|...+.- -.+ .|.|.+|..|... .+.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 46799999997532 222 8999999999843 3578888764
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.53 E-value=18 Score=31.89 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=28.7
Q ss_pred CCeecccccCCccce-----eCCCCccchhhhhc------------CCCCCCccccccc
Q 019939 287 NHVCPICLTDPKDMA-----FGCGHQTCCGCGQD------------LDLCPICRSFIQT 328 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~~------------~~~CP~CR~~i~~ 328 (333)
...|.+|...|.-.. -.||+.||..|... .+.|-.|-..+..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 358999998776421 28999999999752 1367777655443
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.47 E-value=17 Score=27.45 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCCCeecccccCCccce-----eCCCCccchhhhh
Q 019939 285 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
.+...|.+|...|.-.. -.||..||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 45568999998776421 2899999999975
No 118
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.54 E-value=27 Score=25.00 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=17.8
Q ss_pred CCCeecccccCCcccee--CCCCccch
Q 019939 286 DNHVCPICLTDPKDMAF--GCGHQTCC 310 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l--~CgH~fC~ 310 (333)
....|..|.....-+.+ -||..||.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCG 40 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECS
T ss_pred cCCcChhhCCcccccCeEeecCCEecc
Confidence 45789999876443334 78899987
No 119
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=37.83 E-value=21 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=21.0
Q ss_pred CeecccccCCccce-----eCCCCccchhhhh
Q 019939 288 HVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 288 ~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
..|.+|...|.-.. -.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 48999998776421 1799999999974
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=36.01 E-value=22 Score=26.28 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.4
Q ss_pred CCCeecccccCCccce-----eCCCCccchhhhh
Q 019939 286 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
+...|.+|...|.-.. -.||..||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 4468999998876421 1899999999985
No 121
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.47 E-value=3.6 Score=29.16 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=25.3
Q ss_pred CCCCCCeecccccC-Cccce--e--CCCCccchhhhhcC--------CCCCCcccc
Q 019939 283 STSDNHVCPICLTD-PKDMA--F--GCGHQTCCGCGQDL--------DLCPICRSF 325 (333)
Q Consensus 283 ~~~~~~~C~ICl~~-~~~~~--l--~CgH~fC~~C~~~~--------~~CP~CR~~ 325 (333)
...+...|.||+.. |.+-. . -|.-.||..|.-++ +.|-+||+.
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 34567899999963 23311 1 34445677776432 367777753
No 122
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.11 E-value=1.1e+02 Score=22.16 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=8.9
Q ss_pred CCCeecccccCCcc
Q 019939 286 DNHVCPICLTDPKD 299 (333)
Q Consensus 286 ~~~~C~ICl~~~~~ 299 (333)
....|..|-.....
T Consensus 24 ~~~~C~~C~~~I~~ 37 (89)
T 1x64_A 24 RMPLCDKCGSGIVG 37 (89)
T ss_dssp SCCBCTTTCCBCCS
T ss_pred cCCCcccCCCEecc
Confidence 34577777765554
No 123
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.92 E-value=17 Score=26.23 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCCCeecccccCCccceeCC-CCccchhhhhcC
Q 019939 284 TSDNHVCPICLTDPKDMAFGC-GHQTCCGCGQDL 316 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~~~l~C-gH~fC~~C~~~~ 316 (333)
.++..-|.||.+...---+.| |..||..|...+
T Consensus 5 ~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCeEEecCCCCceehHHHHHHH
Confidence 456678999997532223378 788999998643
No 124
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.37 E-value=25 Score=33.72 Aligned_cols=41 Identities=29% Similarity=0.492 Sum_probs=30.2
Q ss_pred CCeecccccCCcc-cee-CCCCccchhhh--------hcCCCCCCcccccc
Q 019939 287 NHVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSFIQ 327 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~l-~CgH~fC~~C~--------~~~~~CP~CR~~i~ 327 (333)
.+.||+-....+. +-- .|.|.-|.+-. ...+.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4789999888777 333 89999776443 24579999988763
No 125
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.16 E-value=8.5 Score=31.57 Aligned_cols=40 Identities=25% Similarity=0.579 Sum_probs=29.3
Q ss_pred CCCeecccccCCcc----cee--CCCCccchhhhhcC--------CCCCCcccc
Q 019939 286 DNHVCPICLTDPKD----MAF--GCGHQTCCGCGQDL--------DLCPICRSF 325 (333)
Q Consensus 286 ~~~~C~ICl~~~~~----~~l--~CgH~fC~~C~~~~--------~~CP~CR~~ 325 (333)
++..|.+|...+.- -.. .|.|.+|..|.... +.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35789999998732 122 89999999998633 468888764
No 126
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.92 E-value=22 Score=26.29 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=22.5
Q ss_pred CCCCeecccccCCccce-----eCCCCccchhhhh
Q 019939 285 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
.+...|.+|...|.-.. -.||..||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34468999998875421 2899999999975
No 127
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.70 E-value=43 Score=23.20 Aligned_cols=41 Identities=20% Similarity=0.445 Sum_probs=26.7
Q ss_pred CCCCCeecccccCCcccee--CCCCccchhhhhc--------CCCCCCcccc
Q 019939 284 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRSF 325 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~~~l--~CgH~fC~~C~~~--------~~~CP~CR~~ 325 (333)
..++..|.||.+. .++++ .|...|-..|+.. .+.||.|+..
T Consensus 6 d~~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4456789999863 23444 6766666677652 2479999764
No 128
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.47 E-value=52 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCCCCeecccccCCccceeCC---CCccchhhhhc
Q 019939 284 TSDNHVCPICLTDPKDMAFGC---GHQTCCGCGQD 315 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~~~l~C---gH~fC~~C~~~ 315 (333)
...+..|.||-.......+|| +-.|--.|+++
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhccc
Confidence 346789999997777777765 55565588864
No 129
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=28.84 E-value=31 Score=24.75 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCeecccccCCcc--cee--CCCCccchhhhh--------cCCCCCCcccccccc
Q 019939 285 SDNHVCPICLTDPKD--MAF--GCGHQTCCGCGQ--------DLDLCPICRSFIQTR 329 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~--~~l--~CgH~fC~~C~~--------~~~~CP~CR~~i~~~ 329 (333)
.+...|.+|...... ++. .|...|-..|+. ....||.|+..+.+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 344679999876543 333 677667778874 124799998876543
No 130
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=28.53 E-value=33 Score=32.79 Aligned_cols=42 Identities=19% Similarity=0.450 Sum_probs=30.7
Q ss_pred CCCeecccccCCcc-cee-CCCCccchhhh--------hcCCCCCCcccccc
Q 019939 286 DNHVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSFIQ 327 (333)
Q Consensus 286 ~~~~C~ICl~~~~~-~~l-~CgH~fC~~C~--------~~~~~CP~CR~~i~ 327 (333)
-...|++-....+. +-- .|.|.-|.+-. ...+.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 35789998887777 333 89999776443 24579999998774
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.43 E-value=23 Score=28.47 Aligned_cols=28 Identities=21% Similarity=0.467 Sum_probs=21.4
Q ss_pred CCeecccccCCccce-----eCCCCccchhhhh
Q 019939 287 NHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 314 (333)
Q Consensus 287 ~~~C~ICl~~~~~~~-----l~CgH~fC~~C~~ 314 (333)
...|.+|...|.-.. -.||+.||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 458999998776421 1899999999975
No 132
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=27.37 E-value=92 Score=21.97 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCCeecccccCCcccee--CCCCccchhhhh--------cCCCCCCcccc
Q 019939 286 DNHVCPICLTDPKDMAF--GCGHQTCCGCGQ--------DLDLCPICRSF 325 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l--~CgH~fC~~C~~--------~~~~CP~CR~~ 325 (333)
....|.||.+. .++++ .|...|-..|+. .-+.|+.|+..
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999863 23555 788888888884 12489999764
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.30 E-value=13 Score=35.50 Aligned_cols=41 Identities=22% Similarity=0.536 Sum_probs=0.0
Q ss_pred CCCeecccccCCccc-----eeCCCCccchhhhhc-----------CCCCCCccccc
Q 019939 286 DNHVCPICLTDPKDM-----AFGCGHQTCCGCGQD-----------LDLCPICRSFI 326 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~-----~l~CgH~fC~~C~~~-----------~~~CP~CR~~i 326 (333)
+...|..|...+.-. --.||+.||..|... .+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346799999877531 128999999999842 24677776544
No 134
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=27.13 E-value=36 Score=23.97 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCeecccccCCcc-ce---eCCCCccch-hhhhcCCCC
Q 019939 287 NHVCPICLTDPKD-MA---FGCGHQTCC-GCGQDLDLC 319 (333)
Q Consensus 287 ~~~C~ICl~~~~~-~~---l~CgH~fC~-~C~~~~~~C 319 (333)
...|.||...... .. -.|+-.+|. .|.+..+.|
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk~C 48 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTC 48 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHCCG
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHhHh
Confidence 4699999863322 22 279999999 999877643
No 135
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.05 E-value=36 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=22.0
Q ss_pred CCCeecccccCCccc---e--eCCCCccchhhhh
Q 019939 286 DNHVCPICLTDPKDM---A--FGCGHQTCCGCGQ 314 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~---~--l~CgH~fC~~C~~ 314 (333)
+...|.+|...|.-. . -.||+.||..|..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 446799999877541 1 2899999999985
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.57 E-value=25 Score=28.22 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=27.0
Q ss_pred CCCeecccccCCccc-----eeCCCCccchhhhhc----CCCCCCccc
Q 019939 286 DNHVCPICLTDPKDM-----AFGCGHQTCCGCGQD----LDLCPICRS 324 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~-----~l~CgH~fC~~C~~~----~~~CP~CR~ 324 (333)
+...|..|...|.-. --.||..||..|... .+.|-.|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 346899999887542 128999999999764 346766654
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.38 E-value=28 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.1
Q ss_pred CCCCccchhhhhcCCCCCCcccccc
Q 019939 303 GCGHQTCCGCGQDLDLCPICRSFIQ 327 (333)
Q Consensus 303 ~CgH~fC~~C~~~~~~CP~CR~~i~ 327 (333)
.||+.| .+=..+-..||.|+..-.
T Consensus 72 ~CG~~F-~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVF-KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBC-CCCSSCCSSCSSSCCCCB
T ss_pred hCcCee-cccCCCCCCCcCCCCCcc
Confidence 589998 211223358999987543
No 138
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=23.88 E-value=1.1e+02 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=24.1
Q ss_pred CchhHHHHHHHHHHhcC--CCeEEEEEecccCCCC
Q 019939 137 LSSQEKKTVEAIVKASE--YPLSIILVGVGDGPWD 169 (333)
Q Consensus 137 ~~~~~~~t~~aI~~AS~--~PlSii~VGvGd~~f~ 169 (333)
+.++++...+.|..... .-+.+-++|.||..|.
T Consensus 102 ~Pdna~~F~~~L~~~~~~l~~~~~aVfGlGdssY~ 136 (219)
T 3hr4_A 102 CPGNGEKLKKSLFMLKELNNKFRYAVFGLGSSMYP 136 (219)
T ss_dssp CCGGGHHHHHHHHHCCCCSSCCEEEEEEEECTTSS
T ss_pred CCHHHHHHHHHHHhcchhhcCCEEEEEeCCCcchH
Confidence 33468888888887532 3467888899999885
No 139
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.56 E-value=1.4e+02 Score=21.32 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCCCeecccccCCcc-cee--C--CC-Cccchhhhh------cCCCCCCccccccc
Q 019939 285 SDNHVCPICLTDPKD-MAF--G--CG-HQTCCGCGQ------DLDLCPICRSFIQT 328 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~-~~l--~--Cg-H~fC~~C~~------~~~~CP~CR~~i~~ 328 (333)
.+...| +|...... ++. . |. ..|-..|+. ....||.|+..-.+
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccccc
Confidence 345667 89875433 333 4 65 467677874 22489999875543
No 140
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.38 E-value=60 Score=24.47 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=27.8
Q ss_pred CCCCCCeecccccCCcc--cee--CCCCccchhhhh----c----CCCCCCcccc
Q 019939 283 STSDNHVCPICLTDPKD--MAF--GCGHQTCCGCGQ----D----LDLCPICRSF 325 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~~~--~~l--~CgH~fC~~C~~----~----~~~CP~CR~~ 325 (333)
...+...|.||...-.. +++ .|...|-..|+. . -+.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34556789999986542 444 677555556664 1 2479999764
No 141
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.27 E-value=73 Score=23.78 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=28.9
Q ss_pred CCCCCCeecccccCC---cc-cee--CCCCccchhhhh------cCCCCCCcccccc
Q 019939 283 STSDNHVCPICLTDP---KD-MAF--GCGHQTCCGCGQ------DLDLCPICRSFIQ 327 (333)
Q Consensus 283 ~~~~~~~C~ICl~~~---~~-~~l--~CgH~fC~~C~~------~~~~CP~CR~~i~ 327 (333)
...++..|.||.+.. .+ +++ .|.-.|-..|+. ..+.||.|.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 345678999999764 22 444 676556556764 2358999976543
No 142
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.36 E-value=35 Score=25.00 Aligned_cols=21 Identities=29% Similarity=0.765 Sum_probs=16.5
Q ss_pred CCCCccchhhhhcCCCCCCccc
Q 019939 303 GCGHQTCCGCGQDLDLCPICRS 324 (333)
Q Consensus 303 ~CgH~fC~~C~~~~~~CP~CR~ 324 (333)
.||+.||..|...... -.|..
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSS
T ss_pred CCCCeeccccCccccC-Ccccc
Confidence 4899999999987765 56654
No 143
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.22 E-value=53 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.624 Sum_probs=25.9
Q ss_pred CCCCCeecccccCCcccee--CCCCccchhhhhc--------CCCCCCccc
Q 019939 284 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRS 324 (333)
Q Consensus 284 ~~~~~~C~ICl~~~~~~~l--~CgH~fC~~C~~~--------~~~CP~CR~ 324 (333)
..++..|.+|.+. .++++ .|...|-..|+.. ...||.|+.
T Consensus 6 ~~~~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999974 23444 6776666677651 137888864
No 144
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.27 E-value=1.7e+02 Score=21.98 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=18.4
Q ss_pred CCCCeecccccCCccc-ee--CCCCccch
Q 019939 285 SDNHVCPICLTDPKDM-AF--GCGHQTCC 310 (333)
Q Consensus 285 ~~~~~C~ICl~~~~~~-~l--~CgH~fC~ 310 (333)
.....|..|.....-+ -+ .||..||.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEecc
Confidence 3447899998755442 34 79999998
No 145
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.01 E-value=1e+02 Score=22.02 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=18.2
Q ss_pred CCCeecccccCCcccee--CCCCccchh
Q 019939 286 DNHVCPICLTDPKDMAF--GCGHQTCCG 311 (333)
Q Consensus 286 ~~~~C~ICl~~~~~~~l--~CgH~fC~~ 311 (333)
....|..|.....-+.+ .||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 34689999875444334 789999883
Done!