Query 019940
Match_columns 333
No_of_seqs 275 out of 1603
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 3.8E-48 8.2E-53 393.6 16.1 256 34-330 201-486 (634)
2 KOG0782 Predicted diacylglycer 100.0 2.1E-40 4.6E-45 329.0 10.6 200 80-320 364-563 (1004)
3 PRK13059 putative lipid kinase 100.0 7.5E-31 1.6E-35 250.6 16.8 166 82-322 2-169 (295)
4 PRK00861 putative lipid kinase 100.0 1.2E-30 2.6E-35 249.2 17.7 165 82-322 3-168 (300)
5 PRK11914 diacylglycerol kinase 100.0 5.2E-30 1.1E-34 245.4 18.8 170 81-321 8-179 (306)
6 PRK13057 putative lipid kinase 100.0 3.7E-30 8.1E-35 244.5 17.4 158 85-321 1-160 (287)
7 PRK13055 putative lipid kinase 100.0 1.1E-29 2.5E-34 246.6 17.2 169 82-322 3-174 (334)
8 TIGR03702 lip_kinase_YegS lipi 100.0 2.1E-29 4.4E-34 240.2 17.4 165 83-321 1-167 (293)
9 PRK13337 putative lipid kinase 100.0 1.7E-29 3.7E-34 242.0 16.7 165 82-320 2-168 (304)
10 COG1597 LCB5 Sphingosine kinas 100.0 2.6E-29 5.7E-34 241.2 16.8 169 82-324 3-174 (301)
11 PRK13054 lipid kinase; Reviewe 100.0 1.3E-28 2.7E-33 235.6 18.1 167 81-321 3-171 (300)
12 PRK12361 hypothetical protein; 100.0 2.4E-28 5.2E-33 251.3 17.8 168 81-321 242-411 (547)
13 TIGR00147 lipid kinase, YegS/R 100.0 5.5E-28 1.2E-32 229.6 16.5 166 82-321 2-170 (293)
14 PLN02958 diacylglycerol kinase 99.9 2.2E-27 4.7E-32 240.9 16.8 173 79-321 109-291 (481)
15 PLN02204 diacylglycerol kinase 99.9 6.5E-25 1.4E-29 224.8 19.0 186 78-321 156-413 (601)
16 PF00781 DAGK_cat: Diacylglyce 99.9 2.5E-24 5.4E-29 181.8 13.0 122 83-229 1-128 (130)
17 smart00046 DAGKc Diacylglycero 99.9 1.2E-22 2.6E-27 171.1 11.9 100 85-199 1-101 (124)
18 KOG1116 Sphingosine kinase, in 99.8 1.5E-18 3.3E-23 175.7 12.6 177 78-320 176-358 (579)
19 KOG1170 Diacylglycerol kinase 99.7 1.3E-18 2.9E-23 179.4 2.6 131 81-229 194-324 (1099)
20 PF00609 DAGK_acc: Diacylglyce 99.4 3.9E-14 8.4E-19 124.5 2.7 51 276-327 2-52 (161)
21 KOG1115 Ceramide kinase [Lipid 99.3 2.3E-12 5E-17 125.9 8.6 178 77-320 154-348 (516)
22 KOG4435 Predicted lipid kinase 99.0 1.2E-09 2.6E-14 107.0 11.2 134 78-226 57-196 (535)
23 PRK03708 ppnK inorganic polyph 98.5 8.7E-07 1.9E-11 84.6 10.5 113 83-221 2-115 (277)
24 KOG1170 Diacylglycerol kinase 98.4 3.1E-08 6.6E-13 103.7 -2.7 47 275-321 614-660 (1099)
25 smart00045 DAGKa Diacylglycero 98.3 1.2E-07 2.6E-12 83.0 0.7 47 276-322 2-48 (160)
26 PRK02645 ppnK inorganic polyph 98.3 4.4E-06 9.6E-11 80.8 11.1 122 82-231 4-128 (305)
27 PRK03378 ppnK inorganic polyph 98.0 4.3E-05 9.4E-10 73.6 10.2 123 82-230 6-131 (292)
28 COG3199 Predicted inorganic po 97.8 0.00015 3.2E-09 70.8 11.2 56 149-218 101-157 (355)
29 PRK01231 ppnK inorganic polyph 97.4 0.0014 3E-08 63.3 11.6 122 82-231 5-131 (295)
30 PF01513 NAD_kinase: ATP-NAD k 97.4 0.00078 1.7E-08 64.4 9.0 71 147-231 75-145 (285)
31 PRK03372 ppnK inorganic polyph 97.2 0.0056 1.2E-07 59.5 13.0 126 79-225 3-135 (306)
32 PRK14077 pnk inorganic polypho 97.2 0.006 1.3E-07 58.7 12.6 125 78-230 7-132 (287)
33 PRK02155 ppnK NAD(+)/NADH kina 97.1 0.0076 1.7E-07 58.1 12.0 125 82-231 6-132 (291)
34 PRK01911 ppnK inorganic polyph 96.9 0.019 4E-07 55.5 13.3 125 83-230 2-132 (292)
35 PRK04539 ppnK inorganic polyph 96.9 0.019 4.1E-07 55.6 12.9 128 81-230 5-136 (296)
36 PRK02649 ppnK inorganic polyph 96.7 0.024 5.1E-07 55.1 12.3 127 82-228 2-134 (305)
37 PRK03501 ppnK inorganic polyph 96.6 0.037 8.1E-07 52.7 12.5 105 83-230 4-109 (264)
38 PLN02935 Bifunctional NADH kin 96.5 0.04 8.6E-07 56.9 12.9 127 76-221 189-321 (508)
39 PRK14075 pnk inorganic polypho 96.2 0.078 1.7E-06 50.2 12.5 66 149-231 42-107 (256)
40 PRK14076 pnk inorganic polypho 95.9 0.14 2.9E-06 53.9 13.4 59 149-221 349-407 (569)
41 PRK00561 ppnK inorganic polyph 95.8 0.11 2.4E-06 49.4 11.0 67 149-229 34-101 (259)
42 PRK04885 ppnK inorganic polyph 95.7 0.13 2.8E-06 49.1 11.4 64 149-224 36-99 (265)
43 PRK01185 ppnK inorganic polyph 95.2 0.17 3.8E-06 48.4 10.5 115 83-230 2-117 (271)
44 PLN02727 NAD kinase 95.2 0.18 3.8E-06 55.5 11.3 126 75-220 672-801 (986)
45 PLN02929 NADH kinase 94.3 0.29 6.3E-06 47.6 9.5 74 148-229 64-148 (301)
46 PRK02231 ppnK inorganic polyph 94.2 0.33 7E-06 46.5 9.6 59 149-221 43-102 (272)
47 PRK04761 ppnK inorganic polyph 92.2 0.68 1.5E-05 43.8 8.2 60 147-219 24-83 (246)
48 PF10254 Pacs-1: PACS-1 cytoso 91.7 0.9 1.9E-05 46.0 8.8 47 149-196 76-128 (414)
49 COG0061 nadF NAD kinase [Coenz 90.9 1.4 3E-05 42.3 8.9 71 148-232 55-125 (281)
50 cd08197 DOIS 2-deoxy-scyllo-in 88.6 2 4.2E-05 42.6 8.2 38 150-189 86-125 (355)
51 cd08180 PDD 1,3-propanediol de 87.6 4.2 9.2E-05 39.5 9.8 42 148-190 78-125 (332)
52 TIGR03405 Phn_Fe-ADH phosphona 87.3 4.7 0.0001 39.7 10.0 101 81-193 23-145 (355)
53 cd08176 LPO Lactadehyde:propan 86.1 4.6 9.9E-05 40.1 9.3 47 148-195 85-148 (377)
54 cd08169 DHQ-like Dehydroquinat 85.0 4.5 9.7E-05 39.8 8.5 91 82-184 24-117 (344)
55 PRK09860 putative alcohol dehy 84.1 7.9 0.00017 38.6 9.9 125 59-196 5-152 (383)
56 cd08179 NADPH_BDH NADPH-depend 83.2 5.9 0.00013 39.3 8.6 119 60-193 2-145 (375)
57 cd08172 GlyDH-like1 Glycerol d 82.9 8.8 0.00019 37.6 9.6 90 82-191 24-117 (347)
58 cd08171 GlyDH-like2 Glycerol d 82.8 2.3 5.1E-05 41.6 5.5 89 82-189 23-117 (345)
59 cd08195 DHQS Dehydroquinate sy 82.7 4.9 0.00011 39.4 7.7 92 81-184 24-119 (345)
60 PRK00002 aroB 3-dehydroquinate 82.4 6.1 0.00013 38.9 8.3 97 81-189 31-133 (358)
61 cd07766 DHQ_Fe-ADH Dehydroquin 82.4 8.6 0.00019 37.1 9.2 91 82-187 24-117 (332)
62 cd08181 PPD-like 1,3-propanedi 81.3 11 0.00023 37.2 9.6 45 148-193 83-143 (357)
63 cd08185 Fe-ADH1 Iron-containin 80.9 11 0.00023 37.4 9.5 101 82-196 26-152 (380)
64 PRK09423 gldA glycerol dehydro 80.6 7.6 0.00016 38.3 8.2 114 58-192 3-126 (366)
65 PRK10624 L-1,2-propanediol oxi 80.3 14 0.00029 36.8 10.0 123 58-195 3-152 (382)
66 cd08173 Gro1PDH Sn-glycerol-1- 80.3 9 0.0002 37.4 8.6 86 82-187 26-113 (339)
67 TIGR01357 aroB 3-dehydroquinat 79.8 7.7 0.00017 37.9 7.9 91 82-184 21-115 (344)
68 KOG4180 Predicted kinase [Gene 79.1 1.5 3.3E-05 43.0 2.6 65 148-223 105-171 (395)
69 cd08551 Fe-ADH iron-containing 78.3 11 0.00025 37.0 8.7 45 148-193 80-141 (370)
70 cd08187 BDH Butanol dehydrogen 78.1 12 0.00027 37.0 8.9 123 59-194 3-148 (382)
71 PF00731 AIRC: AIR carboxylase 78.1 9.4 0.0002 33.5 7.1 81 93-187 8-89 (150)
72 cd08186 Fe-ADH8 Iron-containin 77.6 10 0.00022 37.7 8.1 102 82-195 27-148 (383)
73 TIGR02638 lactal_redase lactal 77.1 17 0.00038 36.0 9.6 123 59-194 3-150 (379)
74 cd08170 GlyDH Glycerol dehydro 76.0 8.8 0.00019 37.5 7.1 92 82-192 23-119 (351)
75 cd08194 Fe-ADH6 Iron-containin 75.2 19 0.00041 35.6 9.3 95 82-191 24-139 (375)
76 cd08188 Fe-ADH4 Iron-containin 74.6 15 0.00032 36.5 8.3 44 148-192 85-145 (377)
77 PRK15138 aldehyde reductase; P 73.8 18 0.00039 36.1 8.8 126 59-196 5-152 (387)
78 cd08177 MAR Maleylacetate redu 72.2 21 0.00046 34.8 8.7 88 82-189 24-115 (337)
79 cd08550 GlyDH-like Glycerol_de 71.9 15 0.00033 35.9 7.7 40 148-191 77-118 (349)
80 cd08199 EEVS 2-epi-5-epi-valio 70.9 18 0.0004 35.7 8.0 33 150-184 90-122 (354)
81 PRK15454 ethanol dehydrogenase 69.9 32 0.00069 34.5 9.6 124 58-196 22-170 (395)
82 cd08192 Fe-ADH7 Iron-containin 68.8 26 0.00057 34.5 8.6 43 148-191 81-144 (370)
83 PRK00843 egsA NAD(P)-dependent 68.3 26 0.00056 34.4 8.4 37 149-189 88-124 (350)
84 PTZ00286 6-phospho-1-fructokin 68.2 17 0.00037 37.5 7.3 47 150-198 178-230 (459)
85 TIGR02483 PFK_mixed phosphofru 67.9 20 0.00043 35.2 7.4 38 149-191 95-132 (324)
86 cd08174 G1PDH-like Glycerol-1- 67.4 41 0.00089 32.6 9.5 35 149-187 76-110 (331)
87 TIGR02482 PFKA_ATP 6-phosphofr 66.0 28 0.0006 33.9 7.9 39 149-191 92-130 (301)
88 cd08183 Fe-ADH2 Iron-containin 65.9 36 0.00077 33.7 8.9 92 82-192 23-139 (374)
89 KOG2178 Predicted sugar kinase 63.9 7.5 0.00016 39.2 3.6 58 149-220 169-226 (409)
90 PLN02834 3-dehydroquinate synt 61.8 31 0.00068 35.2 7.8 93 81-185 100-198 (433)
91 PRK06830 diphosphate--fructose 61.5 23 0.0005 36.4 6.7 49 150-198 174-226 (443)
92 cd08178 AAD_C C-terminal alcoh 61.4 49 0.0011 33.1 9.0 45 148-193 78-150 (398)
93 PLN02564 6-phosphofructokinase 60.9 24 0.00051 36.7 6.7 40 150-191 178-220 (484)
94 cd08198 DHQS-like2 Dehydroquin 60.4 72 0.0016 31.9 9.9 35 149-185 100-134 (369)
95 cd00763 Bacterial_PFK Phosphof 58.7 38 0.00082 33.2 7.5 38 149-191 93-130 (317)
96 PRK06203 aroB 3-dehydroquinate 58.6 69 0.0015 32.2 9.5 92 81-184 42-145 (389)
97 PLN00180 NDF6 (NDH-dependent f 57.9 2.2 4.7E-05 37.6 -1.2 13 154-166 130-142 (180)
98 cd08549 G1PDH_related Glycerol 57.9 40 0.00086 32.9 7.5 34 148-185 80-113 (332)
99 PF00465 Fe-ADH: Iron-containi 57.8 25 0.00054 34.5 6.1 98 83-196 23-143 (366)
100 cd08196 DHQS-like1 Dehydroquin 56.9 76 0.0017 31.3 9.3 90 82-183 20-109 (346)
101 cd08175 G1PDH Glycerol-1-phosp 55.4 46 0.001 32.5 7.5 34 148-185 80-113 (348)
102 cd08193 HVD 5-hydroxyvalerate 55.1 1E+02 0.0022 30.5 10.0 44 148-192 83-143 (376)
103 COG1979 Uncharacterized oxidor 54.5 75 0.0016 31.7 8.6 88 59-157 5-94 (384)
104 PRK13805 bifunctional acetalde 54.1 95 0.0021 34.5 10.4 98 58-168 455-558 (862)
105 cd00363 PFK Phosphofructokinas 54.0 45 0.00099 32.8 7.2 43 149-191 93-136 (338)
106 cd08191 HHD 6-hydroxyhexanoate 53.3 86 0.0019 31.2 9.2 45 148-193 79-140 (386)
107 PRK03202 6-phosphofructokinase 52.6 51 0.0011 32.3 7.2 38 149-191 94-131 (320)
108 PRK14072 6-phosphofructokinase 51.9 48 0.001 33.7 7.2 42 149-191 104-147 (416)
109 cd01836 FeeA_FeeB_like SGNH_hy 51.6 35 0.00076 29.5 5.5 59 151-217 44-102 (191)
110 PRK14071 6-phosphofructokinase 50.3 64 0.0014 32.1 7.7 39 149-191 108-146 (360)
111 cd08182 HEPD Hydroxyethylphosp 50.0 97 0.0021 30.5 8.9 42 148-190 77-139 (367)
112 cd04502 SGNH_hydrolase_like_7 49.7 22 0.00048 30.3 3.8 60 152-218 27-86 (171)
113 PF12219 End_tail_spike: Catal 49.1 8.8 0.00019 33.2 1.1 13 150-162 86-98 (160)
114 PF13685 Fe-ADH_2: Iron-contai 47.2 25 0.00055 33.2 4.1 37 149-189 76-112 (250)
115 PRK10586 putative oxidoreducta 47.1 1E+02 0.0022 30.6 8.5 37 149-189 87-123 (362)
116 PLN02884 6-phosphofructokinase 47.1 55 0.0012 33.3 6.7 41 149-191 144-187 (411)
117 cd08189 Fe-ADH5 Iron-containin 44.8 1.3E+02 0.0028 29.7 8.9 45 148-193 83-145 (374)
118 PF05893 LuxC: Acyl-CoA reduct 44.8 1.2E+02 0.0027 30.5 8.8 95 91-186 95-210 (399)
119 PRK06555 pyrophosphate--fructo 44.6 59 0.0013 33.0 6.4 41 149-191 113-156 (403)
120 PF00365 PFK: Phosphofructokin 42.2 39 0.00084 32.5 4.5 39 150-192 94-132 (282)
121 COG0337 AroB 3-dehydroquinate 41.6 1.1E+02 0.0023 30.8 7.6 84 75-169 27-114 (360)
122 PRK14021 bifunctional shikimat 40.7 1.7E+02 0.0036 30.8 9.3 35 148-184 269-303 (542)
123 cd02007 TPP_DXS Thiamine pyrop 40.0 1.7E+02 0.0037 26.2 8.2 64 149-216 97-177 (195)
124 TIGR02477 PFKA_PPi diphosphate 38.5 79 0.0017 33.4 6.4 41 150-192 163-206 (539)
125 PRK07085 diphosphate--fructose 38.1 91 0.002 33.0 6.9 41 150-191 166-208 (555)
126 PLN03028 pyrophosphate--fructo 37.7 88 0.0019 33.6 6.7 40 150-191 175-217 (610)
127 cd01844 SGNH_hydrolase_like_6 35.1 41 0.00088 29.0 3.2 58 150-219 34-91 (177)
128 PRK06756 flavodoxin; Provision 34.9 2.1E+02 0.0045 24.0 7.5 26 83-110 3-28 (148)
129 cd01831 Endoglucanase_E_like E 34.5 67 0.0014 27.4 4.5 50 149-219 45-94 (169)
130 TIGR02478 6PF1K_euk 6-phosphof 34.1 1.2E+02 0.0027 33.3 7.3 42 150-191 480-523 (745)
131 PTZ00287 6-phosphofructokinase 33.7 88 0.0019 36.7 6.2 48 150-198 930-984 (1419)
132 cd00764 Eukaryotic_PFK Phospho 33.4 1.4E+02 0.003 33.0 7.5 42 149-191 479-523 (762)
133 cd08184 Fe-ADH3 Iron-containin 33.3 4.4E+02 0.0095 25.9 10.5 46 148-194 81-143 (347)
134 COG1454 EutG Alcohol dehydroge 32.5 1.8E+02 0.004 29.2 7.7 124 59-197 3-151 (377)
135 TIGR02478 6PF1K_euk 6-phosphof 32.2 1.6E+02 0.0034 32.4 7.7 43 149-191 95-155 (745)
136 TIGR03590 PseG pseudaminic aci 31.2 2.9E+02 0.0062 26.0 8.6 30 146-184 239-268 (279)
137 cd01841 NnaC_like NnaC (CMP-Ne 30.3 52 0.0011 28.0 3.1 60 151-217 27-86 (174)
138 COG1691 NCAIR mutase (PurE)-re 30.2 86 0.0019 29.6 4.6 33 149-187 174-206 (254)
139 cd00765 Pyrophosphate_PFK Phos 29.0 1.4E+02 0.003 31.6 6.4 42 150-193 168-212 (550)
140 TIGR03846 sulfopy_beta sulfopy 27.9 1.7E+02 0.0037 25.9 6.0 76 150-225 60-153 (181)
141 COG0205 PfkA 6-phosphofructoki 27.3 2.4E+02 0.0052 28.1 7.4 38 150-191 96-133 (347)
142 TIGR01162 purE phosphoribosyla 27.2 3E+02 0.0065 24.3 7.3 32 150-187 56-87 (156)
143 PRK00536 speE spermidine synth 26.1 49 0.0011 31.5 2.3 17 150-166 75-92 (262)
144 cd00764 Eukaryotic_PFK Phospho 25.7 2.1E+02 0.0045 31.6 7.2 43 149-191 98-158 (762)
145 PLN02251 pyrophosphate-depende 25.2 2E+02 0.0043 30.7 6.8 43 150-194 192-237 (568)
146 PF03641 Lysine_decarbox: Poss 24.4 80 0.0017 26.5 3.1 34 150-183 56-91 (133)
147 PF09012 FeoC: FeoC like trans 24.1 38 0.00083 25.1 1.0 34 186-226 16-50 (69)
148 cd01822 Lysophospholipase_L1_l 23.7 1E+02 0.0022 25.9 3.7 59 153-218 42-100 (177)
149 PTZ00468 phosphofructokinase f 23.5 1.2E+02 0.0026 35.4 5.0 43 150-192 802-850 (1328)
150 PF01761 DHQ_synthase: 3-dehyd 23.2 2.3E+02 0.005 26.9 6.3 34 149-184 30-63 (260)
151 TIGR02177 PorB_KorB 2-oxoacid: 22.9 1.2E+02 0.0027 29.2 4.4 13 149-161 71-83 (287)
152 PRK11866 2-oxoacid ferredoxin 22.7 59 0.0013 31.3 2.2 20 149-168 77-97 (279)
153 cd01830 XynE_like SGNH_hydrola 22.7 1.1E+02 0.0023 27.0 3.7 66 152-218 44-118 (204)
154 TIGR00725 conserved hypothetic 22.4 1E+02 0.0022 26.9 3.4 29 150-183 94-122 (159)
155 PTZ00468 phosphofructokinase f 21.9 1.9E+02 0.0042 33.8 6.2 41 150-192 198-241 (1328)
156 cd03372 TPP_ComE Thiamine pyro 21.9 1.8E+02 0.004 25.6 5.0 20 150-169 60-79 (179)
157 TIGR00730 conserved hypothetic 21.7 86 0.0019 28.0 2.9 32 150-182 99-132 (178)
158 PRK10528 multifunctional acyl- 21.3 1.1E+02 0.0023 26.9 3.5 57 154-217 50-106 (191)
159 PF13500 AAA_26: AAA domain; P 20.6 1.1E+02 0.0024 26.9 3.4 36 148-183 130-165 (199)
160 cd01839 SGNH_arylesterase_like 20.4 1.5E+02 0.0032 26.1 4.2 40 175-218 78-117 (208)
161 cd03376 TPP_PFOR_porB_like Thi 20.1 1.6E+02 0.0034 27.4 4.4 19 150-168 81-100 (235)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-48 Score=393.55 Aligned_cols=256 Identities=32% Similarity=0.584 Sum_probs=204.6
Q ss_pred ccccccccchhhhhhccCccccccccccccCeeeecCCccc--------------------------cccCCCCCcEEEE
Q 019940 34 LRPLHDLLHRSSEEAAATPKSKILNNYYIPNYILVSGSEVQ--------------------------RSSLIPSCPVLVF 87 (333)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~--------------------------~~~~~~~~~vlvI 87 (333)
.+-+|+.+... ..-.+..+.+++.++|++++.|..... ...+.+.+|++||
T Consensus 201 ~~~~h~~~~~~---~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PLlVf 277 (634)
T KOG1169|consen 201 QIRVHDKCKSE---LSQECDLGELKDHILPPSTLRPARTARVASDHSGLPGEKSEEVTDAKKMQQLLVTDPPDWRPLLVF 277 (634)
T ss_pred eeeeecchHHH---HhhhccChhhhhccCCceeeecccccccccccccccccccccccccccccccccCCCCCCcceEEE
Confidence 44455555421 113466788999999999998875431 2456677999999
Q ss_pred EcCCCCCCChhhHHHHHHHHhccCcEEEeeccC-hhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHH
Q 019940 88 INSKSGGQLGGKLLLTYRSLLNENQVIDLGEKA-PDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLG 166 (333)
Q Consensus 88 vNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~-p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln 166 (333)
|||+||+++|..++++++.+|++.|||++.... |...+. +.+.+ ...+|+||||||||.||++
T Consensus 278 vNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~gL~-l~~~~---------------~~~riLVcGGDGTvGWVL~ 341 (634)
T KOG1169|consen 278 VNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRPGLT-LFRDV---------------PDFRILVCGGDGTVGWVLG 341 (634)
T ss_pred EecCCcccccHHHHHHHHHhcChhhEEecccCCCCchhHH-HHHhC---------------CcceEEEecCCCcchhhhh
Confidence 999999999999999999999999999999874 776654 33321 3458999999999999999
Q ss_pred HHhhCCCC---CCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCCCCCC
Q 019940 167 VVSDLKLP---HSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSFDPI 243 (333)
Q Consensus 167 ~l~~~~~~---~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~~~~~ 243 (333)
.+.+.+.+ ..||+||+|+||||||||.|+|+.++++.+.. +.++|+.|..+.+.++|+|+|.+.+.... . +
T Consensus 342 ~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~---~--~ 415 (634)
T KOG1169|consen 342 CIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGE---L--V 415 (634)
T ss_pred hHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeeccccc---c--c
Confidence 99875433 57899999999999999999999999997665 99999999999999999999998775322 0 0
Q ss_pred CCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhhhhh
Q 019940 244 APLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGWF 323 (333)
Q Consensus 244 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~~~f 323 (333)
+.. ++. .. .+.+.+...|+||||||+||+|+++||..|+++|++|++|+.||++|+.+|+ +.||
T Consensus 416 -~~~----~~~------~~----~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~-q~~f 479 (634)
T KOG1169|consen 416 -QYS----LKP------PE----KGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGT-QETF 479 (634)
T ss_pred -ccc----ccC------CC----cCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecc-hhhH
Confidence 111 000 00 1122334689999999999999999999999999999999999999999999 6699
Q ss_pred cCCCCCC
Q 019940 324 LAPLLHP 330 (333)
Q Consensus 324 ~~~~~~p 330 (333)
+++|.++
T Consensus 480 ~~~ck~~ 486 (634)
T KOG1169|consen 480 AARCKNL 486 (634)
T ss_pred HHhhcCC
Confidence 9999874
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-40 Score=329.04 Aligned_cols=200 Identities=38% Similarity=0.690 Sum_probs=167.9
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 80 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 80 ~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
+-+|++|||||+|||++|.++++.+.-+|++.||||++..+|..+++ +++.+ ...+|++|||||
T Consensus 364 lmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQVFDlsq~GPK~aLE-myRKV---------------~nLRILaCGGDG 427 (1004)
T KOG0782|consen 364 LMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQVFDLSQLGPKFALE-MYRKV---------------VNLRILACGGDG 427 (1004)
T ss_pred CCCceEEEecCCCCCcchHHHHHHHHHhcChhhheehhccCcHHHHH-HHHhc---------------cceEEEEecCCC
Confidence 34899999999999999999999999999999999999999999886 66654 247999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~ 239 (333)
||.|++..|.++++...+|+||+|+||||||||.|+|+.++.+ +.+.+++..|..+.++.+|+|.+.+.... +
T Consensus 428 TVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytD---EPvSkil~~ve~gtvVqLDRW~lhvEpNp----~ 500 (1004)
T KOG0782|consen 428 TVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTD---EPVSKILQAVEHGTVVQLDRWRLHVEPNP----S 500 (1004)
T ss_pred ceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCc---chHHHHHHHHhcCcEEeeeeeeecccCCC----C
Confidence 9999999999988889999999999999999999999986543 57889999999999999999999875432 1
Q ss_pred CCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHh
Q 019940 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGT 319 (333)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~ 319 (333)
+. |-|.... - .+.+.+ ..|.||||+||||.|+..||++|+.||++|++|+.||+.|+-.++.
T Consensus 501 ~~---pEe~ddG----~----~~~LPL-------~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afs 562 (1004)
T KOG0782|consen 501 CN---PEEEDDG----M----QSALPL-------TVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFS 562 (1004)
T ss_pred CC---hhhhccc----c----hhccch-------hHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHH
Confidence 11 0000000 0 011111 2599999999999999999999999999999999999999988886
Q ss_pred h
Q 019940 320 Q 320 (333)
Q Consensus 320 ~ 320 (333)
.
T Consensus 563 D 563 (1004)
T KOG0782|consen 563 D 563 (1004)
T ss_pred H
Confidence 5
No 3
>PRK13059 putative lipid kinase; Reviewed
Probab=99.97 E-value=7.5e-31 Score=250.61 Aligned_cols=166 Identities=20% Similarity=0.174 Sum_probs=128.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EE-eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID-LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~-l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
++++||+||.||++++.+.|+.+++.|.+... +. ...+...+ .+...+.. ....+.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~-------------~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYD-LKNAFKDI-------------DESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcch-HHHHHHHh-------------hcCCCEEEEECCcc
Confidence 46899999999999988888888888865432 11 11122222 22111111 12346899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~ 239 (333)
|||+|+|+|.+. ..++||||||+||||||||+||+|. ++.++++.|..++.+++|+++++-
T Consensus 68 Tv~evv~gl~~~--~~~~~lgviP~GTgNdfAr~lgi~~--------~~~~a~~~i~~g~~~~vDlg~v~~--------- 128 (295)
T PRK13059 68 TVDNVVNAMKKL--NIDLPIGILPVGTANDFAKFLGMPT--------DIGEACEQILKSKPKKVDLGKIND--------- 128 (295)
T ss_pred HHHHHHHHHHhc--CCCCcEEEECCCCHhHHHHHhCCCC--------CHHHHHHHHHhCCcEEeeEEEECC---------
Confidence 999999999853 2468999999999999999999997 799999999999999999998851
Q ss_pred CCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHh
Q 019940 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGT 319 (333)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~ 319 (333)
++|+|++|+|+||+|++.++...+ +..|++.|++.+++
T Consensus 129 ----------------------------------~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~~~ 166 (295)
T PRK13059 129 ----------------------------------KYFINVASTGLFTDVSQKTDVNLK--------NTIGKLAYYLKGLE 166 (295)
T ss_pred ----------------------------------EEEEEEEeeeechhhhhhccHHHh--------hCcchHHHHHHHHH
Confidence 479999999999999998865332 45689999999998
Q ss_pred hhh
Q 019940 320 QGW 322 (333)
Q Consensus 320 ~~~ 322 (333)
..|
T Consensus 167 ~l~ 169 (295)
T PRK13059 167 ELP 169 (295)
T ss_pred HHh
Confidence 743
No 4
>PRK00861 putative lipid kinase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=249.17 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=131.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 160 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~-~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGT 160 (333)
++++||+||.||++++.+.|+.+++.|.+..-+++.. +.++++.+ +.+... ....+.||++|||||
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~-~a~~~~------------~~~~d~vv~~GGDGT 69 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQ-LAQEAI------------ERGAELIIASGGDGT 69 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHH-HHHHHH------------hcCCCEEEEECChHH
Confidence 5799999999999998888999988886531122222 34455433 322211 123478999999999
Q ss_pred HHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCCC
Q 019940 161 ASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSF 240 (333)
Q Consensus 161 vneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~~ 240 (333)
||+|+|+|.. .++|||+||+||||||||+||+|. +++++++.|.++.++++|+++++-
T Consensus 70 l~evv~~l~~----~~~~lgviP~GTgNdfAr~lgi~~--------~~~~a~~~i~~g~~~~iDlg~vn~---------- 127 (300)
T PRK00861 70 LSAVAGALIG----TDIPLGIIPRGTANAFAAALGIPD--------TIEEACRTILQGKTRRVDVAYCNG---------- 127 (300)
T ss_pred HHHHHHHHhc----CCCcEEEEcCCchhHHHHHcCCCC--------CHHHHHHHHHcCCcEEeeEEEECC----------
Confidence 9999999975 468999999999999999999997 689999999999999999998851
Q ss_pred CCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhh
Q 019940 241 DPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQ 320 (333)
Q Consensus 241 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~ 320 (333)
++|+|.+|+|+||+|++..++..+ +..+++.|++.+++.
T Consensus 128 ---------------------------------~~fin~a~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~l~~ 166 (300)
T PRK00861 128 ---------------------------------QPMILLAGIGFEAETVEEADREAK--------NRFGILAYILSGLQQ 166 (300)
T ss_pred ---------------------------------EEEEEEEeccHHHHHHHHhhHHHH--------hcccHHHHHHHHHHH
Confidence 379999999999999998866543 346899999999987
Q ss_pred hh
Q 019940 321 GW 322 (333)
Q Consensus 321 ~~ 322 (333)
.|
T Consensus 167 l~ 168 (300)
T PRK00861 167 LR 168 (300)
T ss_pred hc
Confidence 43
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=99.97 E-value=5.2e-30 Score=245.45 Aligned_cols=170 Identities=20% Similarity=0.144 Sum_probs=131.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EE-eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID-LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~-l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGD 158 (333)
-++++||+||+||++++.+.|+++.+.|.+... +. +..+.++++.+ +.+.+. ....+.|||+|||
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~-~a~~~~------------~~~~d~vvv~GGD 74 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARH-LVAAAL------------AKGTDALVVVGGD 74 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHH-HHHHHH------------hcCCCEEEEECCc
Confidence 378999999999999999999998888865432 22 22244566543 322211 0234789999999
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCC
Q 019940 159 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (333)
Q Consensus 159 GTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g 238 (333)
||||+|++++.. .++|||+||+||||||||+||+|.+ +++++++.|.+++++++|+++|+...
T Consensus 75 GTi~evv~~l~~----~~~~lgiiP~GT~NdfAr~lg~~~~-------~~~~a~~~i~~g~~~~iDlg~v~~~~------ 137 (306)
T PRK11914 75 GVISNALQVLAG----TDIPLGIIPAGTGNDHAREFGIPTG-------DPEAAADVIVDGWTETVDLGRIQDDD------ 137 (306)
T ss_pred hHHHHHhHHhcc----CCCcEEEEeCCCcchhHHHcCCCCC-------CHHHHHHHHHcCCceEEEEEEEecCC------
Confidence 999999999975 4789999999999999999999852 58889999999999999999997310
Q ss_pred CCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHH
Q 019940 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (333)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (333)
+ . .++|+|++|+||||.|+...++.|+ ..+++.|++.++
T Consensus 138 -----------------------~------~---~~~f~n~~~~G~~a~v~~~~~~~k~---------~~G~~aY~~~~l 176 (306)
T PRK11914 138 -----------------------G------I---VKWFGTVAATGFDSLVTDRANRMRW---------PHGRMRYNLAML 176 (306)
T ss_pred -----------------------C------C---cEEEEEEEeeehHHHHHHHHHhccc---------cCCchhhHHHHH
Confidence 0 0 0479999999999999988755432 248899999998
Q ss_pred hhh
Q 019940 319 TQG 321 (333)
Q Consensus 319 ~~~ 321 (333)
+..
T Consensus 177 ~~l 179 (306)
T PRK11914 177 AEL 179 (306)
T ss_pred HHH
Confidence 764
No 6
>PRK13057 putative lipid kinase; Reviewed
Probab=99.97 E-value=3.7e-30 Score=244.51 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=125.7
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhccCcE-EEe-eccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 019940 85 LVFINSKSGGQLGGKLLLTYRSLLNENQV-IDL-GEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 162 (333)
Q Consensus 85 lvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l-~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvn 162 (333)
+||+||.||+++ +.|.++++.|..... +.+ ..+.++++.+ +.+.+ ..+.+.|||+|||||||
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~-~~~~~-------------~~~~d~iiv~GGDGTv~ 64 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSE-VIEAY-------------ADGVDLVIVGGGDGTLN 64 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHH-HHHHH-------------HcCCCEEEEECchHHHH
Confidence 489999999876 568888888876442 233 2234555433 22221 12357899999999999
Q ss_pred HHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCCCCC
Q 019940 163 WLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSFDP 242 (333)
Q Consensus 163 eVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~~~~ 242 (333)
+|+|++.. .++|||+||+||||||||+||++. +++++++.|..++++++|+++++-
T Consensus 65 ~v~~~l~~----~~~~lgiiP~GT~Ndfar~Lg~~~--------~~~~a~~~i~~~~~~~vD~g~~~~------------ 120 (287)
T PRK13057 65 AAAPALVE----TGLPLGILPLGTANDLARTLGIPL--------DLEAAARVIATGQVRRIDLGWVNG------------ 120 (287)
T ss_pred HHHHHHhc----CCCcEEEECCCCccHHHHHcCCCC--------CHHHHHHHHHcCCeEEeeEEEECC------------
Confidence 99999975 468999999999999999999997 688999999999999999998840
Q ss_pred CCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhhh
Q 019940 243 IAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQG 321 (333)
Q Consensus 243 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~~ 321 (333)
++|+|++|+|+||+|++.++..++ +..|++.|++.+++..
T Consensus 121 -------------------------------~~f~n~~g~G~da~v~~~~~~~~k--------~~~G~~aY~~~~~~~l 160 (287)
T PRK13057 121 -------------------------------HYFFNVASLGLSAELARRLTKELK--------RRWGTLGYAIAALRVL 160 (287)
T ss_pred -------------------------------EEEEEEEecCccHHHHHHhhHHhh--------ccCChhHHHHHHHHHH
Confidence 479999999999999999876543 4568999999999764
No 7
>PRK13055 putative lipid kinase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=246.59 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=132.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEe--eccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDL--GEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l--~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGD 158 (333)
++++||+||+||++++.+.|..+++.|....+ +.+ ++..++++.+ +.+.+. ....+.|||+|||
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~-~~~~~~------------~~~~d~vvv~GGD 69 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKN-EAKRAA------------EAGFDLIIAAGGD 69 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHH-HHHHHh------------hcCCCEEEEECCC
Confidence 57999999999999999999999998876443 222 2223445432 222211 1234689999999
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCC
Q 019940 159 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (333)
Q Consensus 159 GTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g 238 (333)
||||+|+|+|... +.++||||||+||||||||+||+|.. ++.++++.|.+++++++|++.++-
T Consensus 70 GTl~evvngl~~~--~~~~~LgiiP~GTgNdfAr~Lgi~~~-------~~~~a~~~l~~g~~~~vD~g~v~~-------- 132 (334)
T PRK13055 70 GTINEVVNGIAPL--EKRPKMAIIPAGTTNDYARALKIPRD-------NPVEAAKVILKNQTIKMDIGRANE-------- 132 (334)
T ss_pred CHHHHHHHHHhhc--CCCCcEEEECCCchhHHHHHcCCCCc-------CHHHHHHHHHcCCcEEeeEEEECC--------
Confidence 9999999999853 34689999999999999999999862 478899999999999999998840
Q ss_pred CCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHH
Q 019940 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (333)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (333)
+ ++|+|.+|+|+||+|++..+..++ +..|++.|++.++
T Consensus 133 -----------------------~-----------~~F~n~ag~G~da~v~~~~~~~~k--------~~~G~laY~~~~~ 170 (334)
T PRK13055 133 -----------------------D-----------KYFINIAAGGSLTELTYSVPSQLK--------SMFGYLAYLAKGA 170 (334)
T ss_pred -----------------------C-----------cEEEEEehhccchHHHHhcCHHHH--------hhccHHHHHHHHH
Confidence 0 479999999999999988876543 3568999999998
Q ss_pred hhhh
Q 019940 319 TQGW 322 (333)
Q Consensus 319 ~~~~ 322 (333)
+..|
T Consensus 171 ~~l~ 174 (334)
T PRK13055 171 ELLP 174 (334)
T ss_pred HHHH
Confidence 7743
No 8
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=99.96 E-value=2.1e-29 Score=240.23 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEe-eccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDL-GEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 160 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l-~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGT 160 (333)
++++|+||+||.. +.|..+.+.|.+..+ +++ .++.++++.+ +.+.+. .+..+.|||+|||||
T Consensus 1 ~~~~I~N~~~~~~---~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~-~a~~~~------------~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 1 KALLILNGKQADN---EDVREAVGDLRDEGIQLHVRVTWEKGDAQR-YVAEAL------------ALGVSTVIAGGGDGT 64 (293)
T ss_pred CEEEEEeCCccch---hHHHHHHHHHHHCCCeEEEEEecCCCCHHH-HHHHHH------------HcCCCEEEEEcCChH
Confidence 4789999998733 345566666665332 222 2234566543 333221 123468999999999
Q ss_pred HHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCCC
Q 019940 161 ASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSF 240 (333)
Q Consensus 161 vneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~~ 240 (333)
||||+|+|.......++|||+||+||||||||+||+|. +++++++.|..++++++|+++++-
T Consensus 65 i~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~--------~~~~a~~~i~~g~~~~iDlg~v~~---------- 126 (293)
T TIGR03702 65 LREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPL--------EPAKALKLALNGAAQPIDLARVNG---------- 126 (293)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCC--------CHHHHHHHHHhCCceeeeEEEECC----------
Confidence 99999999753222357899999999999999999997 689999999999999999998851
Q ss_pred CCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhh
Q 019940 241 DPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQ 320 (333)
Q Consensus 241 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~ 320 (333)
.++|+|.+|+||||+|++..++..+ +..|++.|++.+++.
T Consensus 127 --------------------------------~~~f~n~~~~G~da~v~~~~~~~~k--------~~~G~~aY~~~~l~~ 166 (293)
T TIGR03702 127 --------------------------------KHYFLNMATGGFGTRVTTETSEKLK--------KALGGAAYLITGLTR 166 (293)
T ss_pred --------------------------------ccEEEEEeecccchHhhhhhhHHHH--------hccchHHHHHHHHHH
Confidence 0379999999999999999876433 457899999999876
Q ss_pred h
Q 019940 321 G 321 (333)
Q Consensus 321 ~ 321 (333)
.
T Consensus 167 l 167 (293)
T TIGR03702 167 F 167 (293)
T ss_pred H
Confidence 3
No 9
>PRK13337 putative lipid kinase; Reviewed
Probab=99.96 E-value=1.7e-29 Score=241.97 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEee-ccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLG-EKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~-~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
++++||+||+||++++.+.|..+.+.|.+..+ +++. .+.++++.+ +.+.+. .+..+.|||+||||
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~-~a~~~~------------~~~~d~vvv~GGDG 68 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATL-AAERAV------------ERKFDLVIAAGGDG 68 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHH-HHHHHH------------hcCCCEEEEEcCCC
Confidence 57899999999999888888888887765443 3222 234556543 333221 12346899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~ 239 (333)
|||+|+|+|... ..++||||||.||||||||+||++. +++++++.|..+.++++|+++++-
T Consensus 69 Tl~~vv~gl~~~--~~~~~lgiiP~GT~NdfAr~lgi~~--------~~~~a~~~i~~g~~~~vDlg~vn~--------- 129 (304)
T PRK13337 69 TLNEVVNGIAEK--ENRPKLGIIPVGTTNDFARALHVPR--------DIEKAADVIIEGHTVPVDIGKANN--------- 129 (304)
T ss_pred HHHHHHHHHhhC--CCCCcEEEECCcCHhHHHHHcCCCC--------CHHHHHHHHHcCCeEEEEEEEECC---------
Confidence 999999999853 3468999999999999999999997 688999999999999999998851
Q ss_pred CCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHh
Q 019940 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGT 319 (333)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~ 319 (333)
++|+|.+|+|+||+|++......+ +..+++.|++.+++
T Consensus 130 ----------------------------------~~fln~~g~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~~~ 167 (304)
T PRK13337 130 ----------------------------------RYFINIAGGGRLTELTYEVPSKLK--------TMLGQLAYYLKGIE 167 (304)
T ss_pred ----------------------------------EEEEeeehhhHHHHHHHhcCHHHh--------cCcccHHHHHHHHH
Confidence 479999999999999988754322 45688999999986
Q ss_pred h
Q 019940 320 Q 320 (333)
Q Consensus 320 ~ 320 (333)
.
T Consensus 168 ~ 168 (304)
T PRK13337 168 M 168 (304)
T ss_pred H
Confidence 5
No 10
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=99.96 E-value=2.6e-29 Score=241.19 Aligned_cols=169 Identities=24% Similarity=0.251 Sum_probs=134.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EE-eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID-LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~-l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
+++.+|+||.||.+++.+.|+++++.|..... .. ...+.++++.+ +.+.+. ....+.||++||||
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~-~a~~a~------------~~~~D~via~GGDG 69 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIE-IAREAA------------VEGYDTVIAAGGDG 69 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHH-HHHHHH------------hcCCCEEEEecCcc
Confidence 67899999999999999999999998876432 11 11123356554 333221 12467899999999
Q ss_pred HHHHHHHHHhhCCCCCCCC-EEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPP-VATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~p-lgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g 238 (333)
|||||+|+|.+. +.+ |||||+||+|||||+||||.+ ++.++++.|.+++++++|+++++-
T Consensus 70 Tv~evingl~~~----~~~~LgilP~GT~NdfAr~Lgip~~-------~~~~Al~~i~~g~~~~vDlg~~~~-------- 130 (301)
T COG1597 70 TVNEVANGLAGT----DDPPLGILPGGTANDFARALGIPLD-------DIEAALELIKSGETRKVDLGQVNG-------- 130 (301)
T ss_pred hHHHHHHHHhcC----CCCceEEecCCchHHHHHHcCCCch-------hHHHHHHHHHcCCeEEEeehhcCC--------
Confidence 999999999974 333 999999999999999999982 499999999999999999995530
Q ss_pred CCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHH
Q 019940 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (333)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (333)
+ ++|+|.+|+|+||+|++..+..|++ ..+.+.|++.++
T Consensus 131 -------------------------------~---~~fin~a~~G~~a~~~~~~~~~~k~--------~~g~~~y~~~~~ 168 (301)
T COG1597 131 -------------------------------R---RYFINNAGIGFDAEVVAAVEEERKK--------GFGRLAYALAGL 168 (301)
T ss_pred -------------------------------c---ceEEEEeecchhHHHHHhhcHHHHh--------ccchHHHHHHHH
Confidence 0 2799999999999999999888773 568899999999
Q ss_pred hhhhhc
Q 019940 319 TQGWFL 324 (333)
Q Consensus 319 ~~~~f~ 324 (333)
+..+-.
T Consensus 169 ~~l~~~ 174 (301)
T COG1597 169 AVLARL 174 (301)
T ss_pred Hhcccc
Confidence 765443
No 11
>PRK13054 lipid kinase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=235.56 Aligned_cols=167 Identities=20% Similarity=0.177 Sum_probs=125.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~-~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGD 158 (333)
-++++||+||++++ .+.|..+.+.|.+..+ +++.. +.++++.+ +.+.+. ....+.||++|||
T Consensus 3 ~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~-~a~~~~------------~~~~d~vvv~GGD 66 (300)
T PRK13054 3 FPKSLLILNGKSAG---NEELREAVGLLREEGHTLHVRVTWEKGDAAR-YVEEAL------------ALGVATVIAGGGD 66 (300)
T ss_pred CceEEEEECCCccc---hHHHHHHHHHHHHcCCEEEEEEecCCCcHHH-HHHHHH------------HcCCCEEEEECCc
Confidence 46789999999763 3556666666655332 33322 34566543 333221 1234689999999
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCC
Q 019940 159 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (333)
Q Consensus 159 GTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g 238 (333)
||||+|+|+|.+...+.++|||+||+||||||||+||+|. +++++++.|.++++++||+++++-
T Consensus 67 GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~--------~~~~a~~~i~~g~~~~iDlg~v~~-------- 130 (300)
T PRK13054 67 GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPL--------EPDKALKLAIEGRAQPIDLARVND-------- 130 (300)
T ss_pred cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCC--------CHHHHHHHHHhCCceEEEEEEEcC--------
Confidence 9999999999864223468999999999999999999997 689999999999999999998851
Q ss_pred CCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHH
Q 019940 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (333)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (333)
+ ++|+|.+|+||||+|++..++..+ +..|++.|++.++
T Consensus 131 -------------------------------~---~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~~Y~~~~l 168 (300)
T PRK13054 131 -------------------------------R---TYFINMATGGFGTRVTTETPEKLK--------AALGGVAYLIHGL 168 (300)
T ss_pred -------------------------------c---eEEEEEeecchhHHHHHhhHHHHH--------hccchHHHHHHHH
Confidence 0 279999999999999998865322 4578999999999
Q ss_pred hhh
Q 019940 319 TQG 321 (333)
Q Consensus 319 ~~~ 321 (333)
+..
T Consensus 169 ~~l 171 (300)
T PRK13054 169 MRM 171 (300)
T ss_pred HHH
Confidence 763
No 12
>PRK12361 hypothetical protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=251.31 Aligned_cols=168 Identities=18% Similarity=0.159 Sum_probs=131.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~-~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
.++++||+||+||++++.+.++++++.|.+..-+++.. +.++++.+ +.+.+. .+..+.|||+||||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~-la~~~~------------~~~~d~Viv~GGDG 308 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEA-LAKQAR------------KAGADIVIACGGDG 308 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHH-HHHHHH------------hcCCCEEEEECCCc
Confidence 57899999999999999999999999887631122222 23344432 333221 02346899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhc-CCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSF-GWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~L-G~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g 238 (333)
|||||+|++.+ .++||||||+||||||||+| ||+.. ..+++++++.|.++..+++|++.++-
T Consensus 309 Tl~ev~~~l~~----~~~~lgiiP~GTgNdfAr~L~gi~~~-----~~~~~~a~~~i~~g~~~~iD~g~vn~-------- 371 (547)
T PRK12361 309 TVTEVASELVN----TDITLGIIPLGTANALSHALFGLGSK-----LIPVEQACDNIIQGHTQRIDTARCND-------- 371 (547)
T ss_pred HHHHHHHHHhc----CCCCEEEecCCchhHHHHHhcCCCCC-----CccHHHHHHHHHhCCCeEEEEEEEcC--------
Confidence 99999999975 46899999999999999999 99841 12688899999999999999998751
Q ss_pred CCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHH
Q 019940 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (333)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (333)
++|+|++|+|+||+|+...++.++ +..|++.|+..++
T Consensus 372 -----------------------------------~~fln~agiG~da~v~~~~~~~~k--------~~~G~laY~~~~~ 408 (547)
T PRK12361 372 -----------------------------------RLMLLLVGIGFEQKMIESADRERK--------NALGQLAYLDGLW 408 (547)
T ss_pred -----------------------------------eEEEEEEeechhHHHHHhccHHHH--------hccCHHHHHHHHH
Confidence 379999999999999998877654 4568999999888
Q ss_pred hhh
Q 019940 319 TQG 321 (333)
Q Consensus 319 ~~~ 321 (333)
+..
T Consensus 409 ~~l 411 (547)
T PRK12361 409 RAV 411 (547)
T ss_pred HHh
Confidence 653
No 13
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.95 E-value=5.5e-28 Score=229.59 Aligned_cols=166 Identities=19% Similarity=0.187 Sum_probs=128.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~-~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
++++||+||.||++++.+.+.++++.|....+ +.+.. +.++++.+ +.+.. + ..+.+.||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~----------~--~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAAR-YVEEA----------R--KFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHH-HHHHH----------H--hcCCCEEEEECCCC
Confidence 57899999999999989999999988865433 22222 23334322 21111 0 12356899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~ 239 (333)
|+++|++++... ...+|||+||.||+|||||+||++. ++.++++.+.+++.+++|+++++-
T Consensus 69 Tl~~v~~~l~~~--~~~~~lgiiP~Gt~N~~a~~l~i~~--------~~~~~~~~l~~~~~~~~Dlg~v~~--------- 129 (293)
T TIGR00147 69 TINEVVNALIQL--DDIPALGILPLGTANDFARSLGIPE--------DLDKAAKLVIAGDARAIDMGQVNK--------- 129 (293)
T ss_pred hHHHHHHHHhcC--CCCCcEEEEcCcCHHHHHHHcCCCC--------CHHHHHHHHHcCCceEEEEEEECC---------
Confidence 999999999753 2357899999999999999999987 688899999999999999998851
Q ss_pred CCCCCCCCCCcccccccccccccccCccCcceeccc-eeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHH
Q 019940 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGG-FWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (333)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~-F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (333)
++ |+|++|+|+||+|++.++...+ +..+++.|++.++
T Consensus 130 ----------------------------------~~~fln~~g~G~~a~v~~~~~~~~k--------~~~g~~~Y~~~~l 167 (293)
T TIGR00147 130 ----------------------------------QYCFINMAGGGFGTEITTETPEKLK--------AALGSLSYILSGL 167 (293)
T ss_pred ----------------------------------eEEEEEEEeechhhHhHhhCCHHHH--------hccchHHHHHHHH
Confidence 47 9999999999999988754322 3468999999999
Q ss_pred hhh
Q 019940 319 TQG 321 (333)
Q Consensus 319 ~~~ 321 (333)
+..
T Consensus 168 ~~l 170 (293)
T TIGR00147 168 MRM 170 (293)
T ss_pred HHH
Confidence 764
No 14
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=99.95 E-value=2.2e-27 Score=240.92 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=129.9
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHH-HHHHHhccCcE-EEee-ccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 019940 79 IPSCPVLVFINSKSGGQLGGKLLL-TYRSLLNENQV-IDLG-EKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 155 (333)
Q Consensus 79 ~~~~~vlvIvNP~SG~~~g~~~~~-~l~~~L~~~~v-~~l~-~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~ 155 (333)
..+++++|||||.||++++.+.|. .++.+|....+ +++. ++.++++.+ +.+.+. ....+.|||+
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~-la~~~~------------~~~~D~VV~v 175 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKE-VVRTMD------------LSKYDGIVCV 175 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHH-HHHHhh------------hcCCCEEEEE
Confidence 456789999999999999988875 68878876443 3332 245677654 333221 1235789999
Q ss_pred cCchHHHHHHHHHhhCC---CCCCCCEEEEeCCCCcchhhhc----CCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEE
Q 019940 156 GGDGTASWLLGVVSDLK---LPHSPPVATVPLGTGNNIPFSF----GWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHI 228 (333)
Q Consensus 156 GGDGTvneVln~l~~~~---~~~~~plgiIP~GTGNDfAR~L----G~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V 228 (333)
|||||||||+|+|.... ...++||||||+||||||||+| |+|. ++.+++..|..++.+++|++.|
T Consensus 176 GGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~--------~~~~A~~~I~~g~~~~vDlg~v 247 (481)
T PLN02958 176 SGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPC--------SATNAVLAIIRGHKCSLDVATI 247 (481)
T ss_pred cCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCc--------CHHHHHHHHHcCCceEEeEEEE
Confidence 99999999999997531 0236999999999999999999 9887 6888999999999999999998
Q ss_pred eeeecCCCCCCCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCccccccccc
Q 019940 229 LMRMKAPKEGSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLV 308 (333)
Q Consensus 229 ~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~ 308 (333)
+.. + .. .+|+|.+|+||||+|.... .+ +|++
T Consensus 248 ~~~------------------------------~-------~~--~f~vn~~g~GfdAdV~~~s---e~-------kr~l 278 (481)
T PLN02958 248 LQG------------------------------E-------TK--FFSVLMLAWGLVADIDIES---EK-------YRWM 278 (481)
T ss_pred EcC------------------------------C-------ce--EEEEEeeeeehhhhhhccc---cc-------cccc
Confidence 610 0 00 1358999999999996432 11 2456
Q ss_pred chHHHHHHHHhhh
Q 019940 309 NQSTYLKLAGTQG 321 (333)
Q Consensus 309 nkl~Y~~~g~~~~ 321 (333)
|++.|.+.+++..
T Consensus 279 G~lrY~~~~l~~l 291 (481)
T PLN02958 279 GSARLDFYGLQRI 291 (481)
T ss_pred chHHHHHHHHHHH
Confidence 9999999999763
No 15
>PLN02204 diacylglycerol kinase
Probab=99.93 E-value=6.5e-25 Score=224.83 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=135.5
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEe-eccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 019940 78 LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDL-GEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 155 (333)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l-~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~ 155 (333)
....++++|||||.||++++.+.|+++..+|....+ +++ .++.++++.. +.+.+.++ +....+.||+|
T Consensus 156 ~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d-~~~~~~~~---------~l~~~D~VVaV 225 (601)
T PLN02204 156 VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFD-VMASISNK---------ELKSYDGVIAV 225 (601)
T ss_pred cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHhhh---------hccCCCEEEEE
Confidence 345678999999999999999999999999876443 222 2245667654 32222110 01245789999
Q ss_pred cCchHHHHHHHHHhhCC---------------------------------------------------------------
Q 019940 156 GGDGTASWLLGVVSDLK--------------------------------------------------------------- 172 (333)
Q Consensus 156 GGDGTvneVln~l~~~~--------------------------------------------------------------- 172 (333)
|||||+|||+|+|....
T Consensus 226 GGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (601)
T PLN02204 226 GGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGD 305 (601)
T ss_pred cCccHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999997311
Q ss_pred -------CCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeeeecCCCCCCCCCCCC
Q 019940 173 -------LPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSFDPIAP 245 (333)
Q Consensus 173 -------~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~~~~~~~g~~~~~~~ 245 (333)
...+++|||||+|||||||+.+..+. ++..++..|..|+.+.+|+++|+-....+.
T Consensus 306 ~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g~~--------dp~taa~~Ii~G~~~~lDig~V~~~~~~~~--------- 368 (601)
T PLN02204 306 QDSDFPFPNERFRFGIIPAGSTDAIVMCTTGER--------DPVTSALHIILGRRVCLDIAQVVRWKTTST--------- 368 (601)
T ss_pred ccccccccCCCceEEEECCccHHHHHHHccCCC--------CHHHHHHHHHhCCCeEeeEEEEeccccccc---------
Confidence 01357899999999999998887766 688889999999999999999963211000
Q ss_pred CCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhhh
Q 019940 246 LELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQG 321 (333)
Q Consensus 246 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~~ 321 (333)
++ . ..+.+||+|.+|+||||+|+...++. |++|++.|.+.+++..
T Consensus 369 ---------------~~-----~-~~~~ryf~s~ag~Gf~gdVi~esek~----------R~mG~~rY~~~g~k~~ 413 (601)
T PLN02204 369 ---------------SE-----I-EPYVRYAASFAGYGFYGDVISESEKY----------RWMGPKRYDYAGTKVF 413 (601)
T ss_pred ---------------cc-----c-cccceEEEEEeecchHHHHHHHhhhh----------cccchHHHHHHHHHHH
Confidence 00 0 01126899999999999999874332 4569999999999763
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.92 E-value=2.5e-24 Score=181.78 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=82.9
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhcc----CcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccC-cEEEEEcC
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNE----NQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKR-LRLIVAGG 157 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~----~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~-~~IVv~GG 157 (333)
+++||+||+||++++. |+.+++.|.. .+++.+.. .++. +.+.+ ... .... +.||++||
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~--~~~~-~~~~~-~~~-----------~~~~~~~ivv~GG 63 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETES--AGHA-EALAR-ILA-----------LDDYPDVIVVVGG 63 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESS--TTHH-HHHHH-HHH-----------HTTS-SEEEEEES
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEec--cchH-HHHHH-HHh-----------hccCccEEEEEcC
Confidence 5899999999999988 4667666654 23343332 2222 21222 111 1233 68999999
Q ss_pred chHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHH-HHHHHHcCCeEeEEEEEEe
Q 019940 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLS-FLEQVKNAKEMQIDSWHIL 229 (333)
Q Consensus 158 DGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~-~l~~I~~~~~~~iD~~~V~ 229 (333)
|||||+|++++.+......+|||+||+||||||||+||++. +... .+..+..+..+++|+++|+
T Consensus 64 DGTl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ar~lg~~~--------~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 64 DGTLNEVVNGLMGSDREDKPPLGIIPAGTGNDFARSLGIPS--------DPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp HHHHHHHHHHHCTSTSSS--EEEEEE-SSS-HHHHHTT--S--------SHHH-HHHHHHHSEEEEEEEEEET
T ss_pred ccHHHHHHHHHhhcCCCccceEEEecCCChhHHHHHcCCCC--------CcHHHHHHHHHhCCCcEeEEEEeC
Confidence 99999999999875433467999999999999999999998 4555 5555666777799999885
No 17
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.89 E-value=1.2e-22 Score=171.07 Aligned_cols=100 Identities=49% Similarity=0.867 Sum_probs=76.2
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHH
Q 019940 85 LVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWL 164 (333)
Q Consensus 85 lvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneV 164 (333)
+||+||+||++++.+++..+++.+...+++.+......++.+ +.+. ....+.||++|||||+|+|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~~~~~~~~~-~~~~--------------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTKKGPAAALV-IFRD--------------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEecCChHHHHH-HHhh--------------cCcCCEEEEEccccHHHHH
Confidence 489999999999999999999988877776554333333322 1111 1234589999999999999
Q ss_pred HHHHhhCCCC-CCCCEEEEeCCCCcchhhhcCCCCC
Q 019940 165 LGVVSDLKLP-HSPPVATVPLGTGNNIPFSFGWGKK 199 (333)
Q Consensus 165 ln~l~~~~~~-~~~plgiIP~GTGNDfAR~LG~~~~ 199 (333)
+|++.+.... ..+|||+||+||||||||+|||+.+
T Consensus 66 vn~l~~~~~~~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKRELPLPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhcccccCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 9999864211 1289999999999999999999984
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-18 Score=175.69 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=130.8
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHH-HHHHhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEE
Q 019940 78 LIPSCPVLVFINSKSGGQLGGKLLLT-YRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIV 154 (333)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~-l~~~L~~~~v-~~l~~-~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv 154 (333)
-...++++||+||.+|.|++.++|.. ++.+|.+..+ +++.. ++|.||.+ +.+.+. ....+.||+
T Consensus 176 ~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HAre-i~rt~d------------l~kyDgIv~ 242 (579)
T KOG1116|consen 176 LKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHARE-IVRTLD------------LGKYDGIVC 242 (579)
T ss_pred cCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHH-HHHhhh------------ccccceEEE
Confidence 44568899999999999999998865 5566766554 44443 57888865 555431 235678999
Q ss_pred EcCchHHHHHHHHHhhCC---CCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeee
Q 019940 155 AGGDGTASWLLGVVSDLK---LPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (333)
Q Consensus 155 ~GGDGTvneVln~l~~~~---~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~ 231 (333)
+||||+++||||||+.-. ....+|||+||+||||+||.++.|..++ + -+..+.-.|.++....+|+..+...
T Consensus 243 vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~---~--~~~~a~l~iirg~~t~~dv~~v~~~ 317 (579)
T KOG1116|consen 243 VSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP---D--LPLLATLLIIRGRLTPMDVSVVEYA 317 (579)
T ss_pred ecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc---c--cchHHHHHHHccCCCchheeehhhc
Confidence 999999999999998632 2268999999999999999999998742 0 1444556677899999999888642
Q ss_pred ecCCCCCCCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcCcccccccccchH
Q 019940 232 MKAPKEGSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQS 311 (333)
Q Consensus 232 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl 311 (333)
.. + . .++.+...-|+=|+|-..-++.|+ +|.+
T Consensus 318 ~~----------------------------~-------~---~fSfLs~~wGlIADiDI~SEk~R~----------mG~~ 349 (579)
T KOG1116|consen 318 GK----------------------------D-------R---HFSFLSAAWGLIADVDIESEKYRW----------MGPA 349 (579)
T ss_pred cC----------------------------c-------c---eEEEEeeeeeeEEecccchHHHHh----------hcch
Confidence 10 0 0 257788999999999887766654 4667
Q ss_pred HHHHHHHhh
Q 019940 312 TYLKLAGTQ 320 (333)
Q Consensus 312 ~Y~~~g~~~ 320 (333)
.|.+.++..
T Consensus 350 Rf~lg~~~r 358 (579)
T KOG1116|consen 350 RFTLGAFLR 358 (579)
T ss_pred hhhHHHHHH
Confidence 777777644
No 19
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=99.72 E-value=1.3e-18 Score=179.35 Aligned_cols=131 Identities=34% Similarity=0.688 Sum_probs=112.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 160 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGT 160 (333)
..|++|++|.+||..+|.+++++++.+|++.|||++...+|.-++. ++..+ +..+|+||||||+
T Consensus 194 ~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~-~f~~~---------------d~friLvcggdGs 257 (1099)
T KOG1170|consen 194 GSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLT-FFSHF---------------ESFRILVCGGDGS 257 (1099)
T ss_pred CCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhh-hhhcc---------------cceEEEEecCCCC
Confidence 4899999999999999999999999999999999998878876664 33332 3578999999999
Q ss_pred HHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEe
Q 019940 161 ASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHIL 229 (333)
Q Consensus 161 vneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~ 229 (333)
|.||+..+..+.+..++.++++|+|||||+||.|||+..++.. .-+.++++.+.++.++.+|.|.|-
T Consensus 258 v~wvls~~ds~~lh~kcql~vlplgtgndlarvlgwg~a~~dd--t~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 258 VGWVLSAIDRLNLHSKCQLAVLPLGTGNDLARVLGWGHAFYDD--TLLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred CcchHHHHHhccchhhcccccccCCChHHHHHHhcccccCchh--hccHHHHHHHHhhhhhhhhcchhh
Confidence 9999999988777789999999999999999999999765442 134488999999999999999874
No 20
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.44 E-value=3.9e-14 Score=124.50 Aligned_cols=51 Identities=35% Similarity=0.578 Sum_probs=48.1
Q ss_pred eeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhhhhhcCCC
Q 019940 276 FWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGWFLAPL 327 (333)
Q Consensus 276 F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~~~f~~~~ 327 (333)
|+||||||+||+|+++||+.|+++|++|++|+.||++|+..|+++.| ..+|
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~-~~~~ 52 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALF-QRSC 52 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHH-hchh
Confidence 89999999999999999999999999999999999999999999987 4444
No 21
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.34 E-value=2.3e-12 Score=125.95 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=120.8
Q ss_pred cCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EE-eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEE
Q 019940 77 SLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID-LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIV 154 (333)
Q Consensus 77 ~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~-l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv 154 (333)
....++.++|||||.+|+|+|.++|+.+.+++--..+ ++ +.++...++.+-++.. . .+++...+-||+
T Consensus 154 ~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei----~------~~~~~~yDGiv~ 223 (516)
T KOG1115|consen 154 EVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEI----Q------NKELHTYDGIVA 223 (516)
T ss_pred HhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhC----C------HhhhhhcccEEE
Confidence 3455688999999999999999999998887532222 11 1223445544322221 0 012344577999
Q ss_pred EcCchHHHHHHHHHhh-C------C--------CCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCC
Q 019940 155 AGGDGTASWLLGVVSD-L------K--------LPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAK 219 (333)
Q Consensus 155 ~GGDGTvneVln~l~~-~------~--------~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~ 219 (333)
+||||-.||+++|+.- . + ....+-+||||+|+.|-..-+--=..+ ...++|. |.-|+
T Consensus 224 VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D-------~~TSAlH-I~lG~ 295 (516)
T KOG1115|consen 224 VGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTRD-------PVTSALH-IILGR 295 (516)
T ss_pred ecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCCc-------cccceee-eEecc
Confidence 9999999999998752 1 1 125677999999999987665432221 2334454 45588
Q ss_pred eEeEEEEEEeeeecCCCCCCCCCCCCCCCCcccccccccccccccCccCcceeccceeeeccccccHHHHHHHHhhhhcC
Q 019940 220 EMQIDSWHILMRMKAPKEGSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLH 299 (333)
Q Consensus 220 ~~~iD~~~V~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~F~NyfsiG~DA~V~~~f~~~R~~~ 299 (333)
...+|+-.|.-. . .+-|+-.|.+|-||=++|...-+++|.
T Consensus 296 ~l~vDVctVht~------------------------------~--------kLiRysaSa~gYGFyGDvl~dSEKYRW-- 335 (516)
T KOG1115|consen 296 KLFVDVCTVHTI------------------------------E--------KLIRYSASAAGYGFYGDVLSDSEKYRW-- 335 (516)
T ss_pred ceeeeeeeeeec------------------------------c--------hheeeehhhhcccccchhhhhhhhhhc--
Confidence 888999877510 0 112678899999999999988877654
Q ss_pred cccccccccchHHHHHHHHhh
Q 019940 300 PEKFQNQLVNQSTYLKLAGTQ 320 (333)
Q Consensus 300 p~~f~~rl~nkl~Y~~~g~~~ 320 (333)
++...|-+.|+|.
T Consensus 336 --------mGp~RYDfsglKt 348 (516)
T KOG1115|consen 336 --------MGPKRYDFSGLKT 348 (516)
T ss_pred --------cCchhhhhHHHHH
Confidence 5678899999975
No 22
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-09 Score=107.04 Aligned_cols=134 Identities=18% Similarity=0.086 Sum_probs=82.8
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHH-HHHHhc--cCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEE
Q 019940 78 LIPSCPVLVFINSKSGGQLGGKLLLT-YRSLLN--ENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIV 154 (333)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~-l~~~L~--~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv 154 (333)
....++++|++||.+..+.....+.+ ...+|+ ..+|-.+.....+++.. +...++ ...+.|+|
T Consensus 57 ~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~-l~e~~~-------------t~~Dii~V 122 (535)
T KOG4435|consen 57 ETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKA-LAEAVD-------------TQEDIIYV 122 (535)
T ss_pred ccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHH-HHHHhc-------------cCCCeEEE
Confidence 44558999999999987666555443 334554 34442233334444321 222221 12488999
Q ss_pred EcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCe---EeEEEE
Q 019940 155 AGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKE---MQIDSW 226 (333)
Q Consensus 155 ~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~---~~iD~~ 226 (333)
+|||||++|||.|++..+ ...+|++++|.|--|-...+.-..--..+++.+.+-+++..+.+++. ..+|+-
T Consensus 123 aGGDGT~~eVVTGi~Rrr-~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435|consen 123 AGGDGTIGEVVTGIFRRR-KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred ecCCCcHHHhhHHHHhcc-cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEec
Confidence 999999999999998742 46789999999987654444322211233445556666667776665 555653
No 23
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.48 E-value=8.7e-07 Score=84.64 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTv 161 (333)
++.+++|+ |...+.++++++.+.|.+..+ +.+........-......+.. +. ..+.+.||++|||||+
T Consensus 2 ~v~iv~~~--~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-------~~--~~~~d~vi~iGGDGTl 70 (277)
T PRK03708 2 RFGIVARR--DKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLP-------LE--EMDVDFIIAIGGDGTI 70 (277)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccc-------cc--ccCCCEEEEEeCcHHH
Confidence 57788887 446777889999988865433 222211000000000000000 00 0135789999999999
Q ss_pred HHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeE
Q 019940 162 SWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEM 221 (333)
Q Consensus 162 neVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~ 221 (333)
.++++ +.. ..+|+..||.||. +|...+. +. ++.++++.+.++...
T Consensus 71 L~a~~-~~~----~~~pi~gIn~G~l-GFl~~~~-~~--------~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 71 LRIEH-KTK----KDIPILGINMGTL-GFLTEVE-PE--------ETFFALSRLLEGDYF 115 (277)
T ss_pred HHHHH-hcC----CCCeEEEEeCCCC-CccccCC-HH--------HHHHHHHHHHcCCce
Confidence 99999 654 4789999999998 8888876 33 688999999988754
No 24
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.37 E-value=3.1e-08 Score=103.73 Aligned_cols=47 Identities=36% Similarity=0.539 Sum_probs=45.1
Q ss_pred ceeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhhh
Q 019940 275 GFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQG 321 (333)
Q Consensus 275 ~F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~~ 321 (333)
.|+||||||+||.|++.||..|+.||+++.+|..|++||.+.|.|+.
T Consensus 614 VMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeL 660 (1099)
T KOG1170|consen 614 VMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKEL 660 (1099)
T ss_pred hhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHH
Confidence 59999999999999999999999999999999999999999999874
No 25
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.34 E-value=1.2e-07 Score=83.04 Aligned_cols=47 Identities=38% Similarity=0.743 Sum_probs=43.8
Q ss_pred eeeeccccccHHHHHHHHhhhhcCcccccccccchHHHHHHHHhhhh
Q 019940 276 FWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGW 322 (333)
Q Consensus 276 F~NyfsiG~DA~V~~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~~~~~ 322 (333)
|+||+||||||+|++.++..|+++|.++++++.|+++|++.+++..|
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~ 48 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLF 48 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhh
Confidence 89999999999999999999999898888888999999999998754
No 26
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.32 E-value=4.4e-06 Score=80.83 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccCh-hhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAP-DKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p-~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
+++++|+|| |.....+.+..+.+.|.+..+ +.+..... .......... .....+.||++||||
T Consensus 4 kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~d~vi~~GGDG 68 (305)
T PRK02645 4 KQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLAS-------------ASELIDLAIVLGGDG 68 (305)
T ss_pred CEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhc-------------cccCcCEEEEECCcH
Confidence 569999998 545666778888877754332 11221111 1111000000 012357899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeC-CCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeee
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPL-GTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~-GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~ 231 (333)
|++++++.+.. ..+|+..|.+ |+-.=|+..-... .+ .++++.+.+++..--.+..+.+.
T Consensus 69 T~l~~~~~~~~----~~~pv~gin~~G~lGFL~~~~~~~--------~~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 69 TVLAAARHLAP----HDIPILSVNVGGHLGFLTHPRDLL--------QD-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred HHHHHHHHhcc----CCCCEEEEecCCcceEecCchhhc--------ch-HHHHHHHHcCCceEEEeeEEEEE
Confidence 99999999864 4788999998 7755444221101 13 67899999998654455444443
No 27
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.98 E-value=4.3e-05 Score=73.59 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=74.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhh-ccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEI-EKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~-~~~~~IVv~GGDG 159 (333)
+++.+|.|+.. ....++...+.+.|.+..+ ..+.. .....+. .. .. .. ..+ ... .+.+.||++||||
T Consensus 6 ~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~-~~~~~~~-~~-~~---~~--~~~-~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 6 KCIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVIVEQ-QIAHELQ-LK-NV---KT--GTL-AEIGQQADLAIVVGGDG 74 (292)
T ss_pred CEEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEEEec-chhhhcC-cc-cc---cc--cch-hhcCCCCCEEEEECCcH
Confidence 55888988755 5666778888887765443 22221 1111000 00 00 00 000 001 2357899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCc-chhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEee
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGN-NIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGN-DfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~ 230 (333)
|+..++..+... .+.+||.++|+ +|...+. + +++.++++.|.++...--.+..+..
T Consensus 75 T~L~aa~~~~~~------~~Pilgin~G~lGFl~~~~-~--------~~~~~~l~~i~~g~~~i~~r~~L~~ 131 (292)
T PRK03378 75 NMLGAARVLARY------DIKVIGINRGNLGFLTDLD-P--------DNALQQLSDVLEGHYISEKRFLLEA 131 (292)
T ss_pred HHHHHHHHhcCC------CCeEEEEECCCCCcccccC-H--------HHHHHHHHHHHcCCceEEEEEEEEE
Confidence 999999887541 35688889999 8887766 2 2788999999988765444444443
No 28
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.85 E-value=0.00015 Score=70.75 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=43.2
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh-hhcCCCCCCCCCchHHHHHHHHHHHcC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP-FSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA-R~LG~~~~~~~~~~~~~~~~l~~I~~~ 218 (333)
-+.|+.+|||||.-.|++++. .++|+-=||.||-|-++ ..+. |. +...++..+.++
T Consensus 101 VdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~SgvfA~~-P~--------~aa~l~~~~lkg 157 (355)
T COG3199 101 VDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSGVFALS-PE--------DAARLLGAFLKG 157 (355)
T ss_pred ceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceeccccccC-hH--------HHHHHHHHHhcc
Confidence 467999999999999999983 47899999999988765 3322 22 566777777777
No 29
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.45 E-value=0.0014 Score=63.28 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeecc-C---hhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEc
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEK-A---PDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAG 156 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~-~---p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~G 156 (333)
+++.||+|+.. ..+.+.++.+.+.|.+..+ +.+... . +.+... . ...+ .+ ....+.||++|
T Consensus 5 ~~v~iv~~~~k--~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~-~-~~~~-------~~---~~~~d~vi~~G 70 (295)
T PRK01231 5 RNIGLIGRLGS--SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQ-T-VSRK-------LL---GEVCDLVIVVG 70 (295)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccc-c-cchh-------hc---ccCCCEEEEEe
Confidence 35888989766 4666788888887755332 222211 1 100000 0 0000 00 11356899999
Q ss_pred CchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeee
Q 019940 157 GDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (333)
Q Consensus 157 GDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~ 231 (333)
||||+..++..+.. ..+|+--|.+|+- |.-.. .+.+++.++++.+.++...--.+..+.+.
T Consensus 71 GDGt~l~~~~~~~~----~~~Pvlgin~G~l-------GFl~~---~~~~~~~~~l~~~~~g~~~i~~r~~L~~~ 131 (295)
T PRK01231 71 GDGSLLGAARALAR----HNVPVLGINRGRL-------GFLTD---IRPDELEFKLAEVLDGHYQEEERFLLEAE 131 (295)
T ss_pred CcHHHHHHHHHhcC----CCCCEEEEeCCcc-------ccccc---CCHHHHHHHHHHHHcCCceEEEEEEEEEE
Confidence 99999999988753 4667666777753 22221 12347889999999887554444444443
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.38 E-value=0.00078 Score=64.40 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=50.7
Q ss_pred ccCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEE
Q 019940 147 EKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSW 226 (333)
Q Consensus 147 ~~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~ 226 (333)
.+.+.||++|||||+-.++..+.. ..+|+-=|+.||- .|--.+. .+++..+++.+.+++...-.+.
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~----~~~Pilgin~G~l-gfl~~~~---------~~~~~~~l~~~~~g~~~~~~r~ 140 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGD----YDIPILGINTGTL-GFLTEFE---------PEDIEEALEKILAGEYSIEERM 140 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTT----ST-EEEEEESSSS-TSSSSEE---------GCGHHHHHHHHHHTHCEEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhcc----CCCcEEeecCCCc-cccccCC---------HHHHHHHHHHHhcCCeEEEEee
Confidence 356789999999999999888754 4789988999984 4433332 2278889999988776655555
Q ss_pred EEeee
Q 019940 227 HILMR 231 (333)
Q Consensus 227 ~V~~~ 231 (333)
.+...
T Consensus 141 ~l~~~ 145 (285)
T PF01513_consen 141 RLEVS 145 (285)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55443
No 31
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.23 E-value=0.0056 Score=59.51 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=70.6
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHH------HHhhhccchhhhhhccCcE
Q 019940 79 IPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTL------EKFKAAGDVFASEIEKRLR 151 (333)
Q Consensus 79 ~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l------~~l~~~g~~la~~~~~~~~ 151 (333)
.+.+++.+|.|+.. ....++...+.+.|....+ ..+.. .....+..-.... ..+. ....+ ..+.+.
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~D~ 75 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAGIGVRVLD-AEAVDLGATHPAPDDFRAMEVVD-ADPDA---ADGCEL 75 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEee-chhhhhccccccccccccccccc-chhhc---ccCCCE
Confidence 34567899988744 5666778888887765443 11221 1111000000000 0000 00000 123478
Q ss_pred EEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEE
Q 019940 152 LIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDS 225 (333)
Q Consensus 152 IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~ 225 (333)
||++|||||+-.++..+.. ..+||--|.+|+-.=|+.. ..+++.++|+.+.++...-..+
T Consensus 76 vi~lGGDGT~L~aar~~~~----~~~PilGIN~G~lGFL~~~----------~~~~~~~~l~~i~~g~y~i~~R 135 (306)
T PRK03372 76 VLVLGGDGTILRAAELARA----ADVPVLGVNLGHVGFLAEA----------EAEDLDEAVERVVDRDYRVEER 135 (306)
T ss_pred EEEEcCCHHHHHHHHHhcc----CCCcEEEEecCCCceeccC----------CHHHHHHHHHHHHcCCceEEEe
Confidence 9999999999998887654 4677777888874322221 1347889999999988654443
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.19 E-value=0.006 Score=58.74 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=70.7
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEc
Q 019940 78 LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAG 156 (333)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~G 156 (333)
+...+++.+|+||. . ...+++.++.+.|....+ +.+.. .....+. .. ... . +.+ ..+.+.||+.|
T Consensus 7 ~~~~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~g~~~~~~~-~~~~~~~-~~-~~~-~----~~~---~~~~Dlvi~iG 72 (287)
T PRK14077 7 HKNIKKIGLVTRPN--V-SLDKEILKLQKILSIYKVEILLEK-ESAEILD-LP-GYG-L----DEL---FKISDFLISLG 72 (287)
T ss_pred cccCCEEEEEeCCc--H-HHHHHHHHHHHHHHHCCCEEEEec-chhhhhc-cc-ccc-h----hhc---ccCCCEEEEEC
Confidence 33456799999986 3 677788888887765443 21221 1111000 00 000 0 000 12357899999
Q ss_pred CchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEee
Q 019940 157 GDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (333)
Q Consensus 157 GDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~ 230 (333)
||||+-.++..+.. ..+|+--|-+|+ ||.=.. ...++++++++.+.+++..--.+-.+.+
T Consensus 73 GDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFLt~---~~~~~~~~~l~~i~~g~y~ie~r~~L~~ 132 (287)
T PRK14077 73 GDGTLISLCRKAAE----YDKFVLGIHAGH-------LGFLTD---ITVDEAEKFFQAFFQGEFEIEKPYMLSV 132 (287)
T ss_pred CCHHHHHHHHHhcC----CCCcEEEEeCCC-------cccCCc---CCHHHHHHHHHHHHcCCCeEEEEEEEEE
Confidence 99999888877654 356654466776 332221 1234788899999998754333333333
No 33
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.06 E-value=0.0076 Score=58.10 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=70.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhh-ccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEI-EKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~-~~~~~IVv~GGDG 159 (333)
+.+.+|.|+.. ....+.+..+.+.|....+ +.+..... .... . ..+... .. ... ...+.||++||||
T Consensus 6 ~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~v~~~~~-~~~~-~-~~~~~~-----~~-~~~~~~~d~vi~~GGDG 74 (291)
T PRK02155 6 KTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVVFEADTA-RNIG-L-TGYPAL-----TP-EEIGARADLAVVLGGDG 74 (291)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchh-hhcC-c-cccccc-----Ch-hHhccCCCEEEEECCcH
Confidence 45888888755 4666778888887765432 11221110 0000 0 000000 00 001 2357899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEeee
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~~ 231 (333)
|+..++..+.. .++|+-=|.+|+-.=|+ .+ ..+++.++|+.+.++...--.+..+.+.
T Consensus 75 t~l~~~~~~~~----~~~pilGIn~G~lGFL~---~~-------~~~~~~~~l~~~~~g~~~i~~r~~L~~~ 132 (291)
T PRK02155 75 TMLGIGRQLAP----YGVPLIGINHGRLGFIT---DI-------PLDDMQETLPPMLAGNYEEEERMLLEAR 132 (291)
T ss_pred HHHHHHHHhcC----CCCCEEEEcCCCccccc---cC-------CHHHHHHHHHHHHcCCceEEEeEEEEEE
Confidence 99999998754 35665557777643222 11 2347888999999988654455554443
No 34
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.91 E-value=0.019 Score=55.50 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHH----HHHHHhhhccchhhhhh-ccCcEEEEEc
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLY----VTLEKFKAAGDVFASEI-EKRLRLIVAG 156 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~----~~l~~l~~~g~~la~~~-~~~~~IVv~G 156 (333)
++.+|+|+.. ....++...+.+.|.+..+ +.+.. .....+. .. ...... +.. ... ++.+.||+.|
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~-~~~~~~~-~~~~~~~~~~~~----~~~-~~~~~~~dlvi~lG 72 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERGAEVLIEE-KFLDFLK-QDLKFHPSYDTF----SDN-EELDGSADMVISIG 72 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCCCEEEEec-chhhhhc-cccccccccccc----cch-hhcccCCCEEEEEC
Confidence 4778888744 5666778888887765443 22221 1111000 00 000000 000 011 2357899999
Q ss_pred CchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEee
Q 019940 157 GDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (333)
Q Consensus 157 GDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~ 230 (333)
||||+-.++..+.. ..+|+-=|-+|+ ||.=.. ...++++++|+.+.+++..--.+-.+..
T Consensus 73 GDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFLt~---~~~~~~~~~l~~i~~g~~~i~~r~~L~~ 132 (292)
T PRK01911 73 GDGTFLRTATYVGN----SNIPILGINTGR-------LGFLAT---VSKEEIEETIDELLNGDYTIEERSLLQL 132 (292)
T ss_pred CcHHHHHHHHHhcC----CCCCEEEEecCC-------CCcccc---cCHHHHHHHHHHHHcCCceEEEEeeEEE
Confidence 99999888887754 356655577776 443221 1234788999999998865444444433
No 35
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.87 E-value=0.019 Score=55.55 Aligned_cols=128 Identities=14% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccC-h-hhHHHHHH-HHHHHhhhccchhhhhhccCcEEEEEc
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKA-P-DKVLHQLY-VTLEKFKAAGDVFASEIEKRLRLIVAG 156 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~-p-~~~~~~~~-~~l~~l~~~g~~la~~~~~~~~IVv~G 156 (333)
-+++.+|+|+.. ....+++..+.+.|.+..+ +.+.... . ..... +. ..... . ....+ ....+.||++|
T Consensus 5 ~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~---~~~~D~vi~lG 76 (296)
T PRK04539 5 FHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYT-QDTVGCHI-V-NKTEL---GQYCDLVAVLG 76 (296)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecccccccchhc-cccccccc-c-chhhc---CcCCCEEEEEC
Confidence 356899999855 4666788888887765443 2222110 0 00000 00 00000 0 00000 01357899999
Q ss_pred CchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEee
Q 019940 157 GDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (333)
Q Consensus 157 GDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~ 230 (333)
||||+-.++..+.. ..+||-=|-+|+ ||.=.. ...+++.++++.+.+++...-.+..+..
T Consensus 77 GDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFL~~---~~~~~~~~~l~~i~~g~~~~~~r~~l~~ 136 (296)
T PRK04539 77 GDGTFLSVAREIAP----RAVPIIGINQGH-------LGFLTQ---IPREYMTDKLLPVLEGKYLAEERILIEA 136 (296)
T ss_pred CcHHHHHHHHHhcc----cCCCEEEEecCC-------CeEeec---cCHHHHHHHHHHHHcCCceEEEeeeEEE
Confidence 99999988877654 356655577776 443322 1234788899999988754444444443
No 36
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.72 E-value=0.024 Score=55.15 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=67.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHH---H--HHhhhccchhhhhhccCcEEEEE
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVT---L--EKFKAAGDVFASEIEKRLRLIVA 155 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~---l--~~l~~~g~~la~~~~~~~~IVv~ 155 (333)
+++.+|+|+.. ..+.++...+.+.|.+..+ +.+.. .....+. .... . ..+. .........+.+.||++
T Consensus 2 ~~igiv~n~~~--~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~Dlvi~i 75 (305)
T PRK02649 2 PKAGIIYNDGK--PLAVRTAEELQDKLEAAGWEVVRAS-SSGGILG-YANPDQPVCHTGID--QLVPPGFDSSMKFAIVL 75 (305)
T ss_pred CEEEEEEcCCC--HHHHHHHHHHHHHHHHCCCEEEEec-chhhhcC-cccccccccccccc--ccChhhcccCcCEEEEE
Confidence 35788888743 4566788888887765443 22221 1111000 0000 0 0000 00000001234789999
Q ss_pred cCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEE
Q 019940 156 GGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHI 228 (333)
Q Consensus 156 GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V 228 (333)
|||||+-.++..+.. ..+|+--|-+|+ ||.=.. ...+++.++|+.+.++...--.+-.+
T Consensus 76 GGDGTlL~aar~~~~----~~iPilGIN~G~-------lGFLt~---~~~~~~~~~l~~l~~g~y~ie~r~~L 134 (305)
T PRK02649 76 GGDGTVLSAARQLAP----CGIPLLTINTGH-------LGFLTE---AYLNQLDEAIDQVLAGQYTIEERTML 134 (305)
T ss_pred eCcHHHHHHHHHhcC----CCCcEEEEeCCC-------Cccccc---CCHHHHHHHHHHHHcCCcEEEEeeeE
Confidence 999999988887654 356654466665 332111 12347889999999887543333333
No 37
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.60 E-value=0.037 Score=52.72 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 162 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvn 162 (333)
++.+++|+.. .+.++...+++.|.+..+-.... . .+.+.||+.|||||+-
T Consensus 4 ~i~iv~~~~~---~a~~~~~~l~~~l~~~g~~~~~~--~-------------------------~~~D~vi~lGGDGT~L 53 (264)
T PRK03501 4 NLFFFYKRDK---ELVEKVKPLKKIAEEYGFTVVDH--P-------------------------KNANIIVSIGGDGTFL 53 (264)
T ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHCCCEEEcC--C-------------------------CCccEEEEECCcHHHH
Confidence 5677777655 66677788888776544321110 0 1236799999999998
Q ss_pred HHHHHHhhCCCCCCCCEEEEeC-CCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEee
Q 019940 163 WLLGVVSDLKLPHSPPVATVPL-GTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (333)
Q Consensus 163 eVln~l~~~~~~~~~plgiIP~-GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~ 230 (333)
.++..+... ..+|+-=|.+ |+ ||.=.. ...++++++++.+.+++..--.+..+..
T Consensus 54 ~a~~~~~~~---~~~pilgIn~~G~-------lGFL~~---~~~~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 54 QAVRKTGFR---EDCLYAGISTKDQ-------LGFYCD---FHIDDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred HHHHHhccc---CCCeEEeEecCCC-------CeEccc---CCHHHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 887765431 2456333555 53 333121 1234788999999998864444444433
No 38
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.52 E-value=0.04 Score=56.86 Aligned_cols=127 Identities=18% Similarity=0.217 Sum_probs=67.6
Q ss_pred ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhcc-C--cEEEeeccChhhHHHHH--HHHHHHhhhccchhhhhh-ccC
Q 019940 76 SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNE-N--QVIDLGEKAPDKVLHQL--YVTLEKFKAAGDVFASEI-EKR 149 (333)
Q Consensus 76 ~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~-~--~v~~l~~~~p~~~~~~~--~~~l~~l~~~g~~la~~~-~~~ 149 (333)
.-..+.+.++||.||.. ....++...+.+.|.. . +++ +.. .....+... .......-.....+ .+. ...
T Consensus 189 ~w~~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~-ve~-~~a~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~ 263 (508)
T PLN02935 189 KWESDPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIY-VEP-RVKKELLSESSYFNFVQTWEDEKEI-LLLHTKV 263 (508)
T ss_pred eecCCCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEE-Eec-hhhhhhccccccccccccccccchh-hhcccCC
Confidence 33556788999999855 4566677778777752 2 332 221 100000000 00000000000000 001 235
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeE
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEM 221 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~ 221 (333)
+.||++|||||+-.++..+.. ..+||-=|.+|+ ||.=.. ...+++.++|+.|.++...
T Consensus 264 DlVIsiGGDGTlL~Aar~~~~----~~iPILGIN~G~-------LGFLt~---i~~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 264 DLVITLGGDGTVLWAASMFKG----PVPPVVPFSMGS-------LGFMTP---FHSEQYRDCLDAILKGPIS 321 (508)
T ss_pred CEEEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------cceecc---cCHHHHHHHHHHHHcCCce
Confidence 789999999999999887654 345654466665 222111 1234788999999988754
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.25 E-value=0.078 Score=50.17 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=44.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEE
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHI 228 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V 228 (333)
.+.||++|||||+-.++..+ .+|+-=|-+|+ +|.=.. ...+++.++++.+.+++.....+..+
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~-------~~Pilgin~G~-------lGfl~~---~~~~~~~~~l~~~~~g~~~~~~r~~l 104 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKV-------GTPLVGFKAGR-------LGFLSS---YTLEEIDRFLEDLKNWNFREEKRWFL 104 (256)
T ss_pred CCEEEEECCcHHHHHHHHHc-------CCCEEEEeCCC-------Cccccc---cCHHHHHHHHHHHHcCCcEEEEeeEE
Confidence 47899999999998777654 35543455555 443321 22357889999999998765555555
Q ss_pred eee
Q 019940 229 LMR 231 (333)
Q Consensus 229 ~~~ 231 (333)
.+.
T Consensus 105 ~~~ 107 (256)
T PRK14075 105 KIE 107 (256)
T ss_pred EEE
Confidence 544
No 40
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.88 E-value=0.14 Score=53.93 Aligned_cols=59 Identities=19% Similarity=0.363 Sum_probs=42.2
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeE
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEM 221 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~ 221 (333)
.+.||+.|||||+-.++..+.. ..+||-=|-+|+ ||.=.. ...+++.++|+.+.+++..
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~----~~~PilGin~G~-------lGFL~~---~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNG----EEIPIICINMGT-------VGFLTE---FSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcC----CCCCEEEEcCCC-------CCcCcc---cCHHHHHHHHHHHHcCCce
Confidence 4689999999999988877654 356765588887 333221 1234788899999998754
No 41
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.76 E-value=0.11 Score=49.43 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=41.7
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHH-HHHHHHcCCeEeEEEEE
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLS-FLEQVKNAKEMQIDSWH 227 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~-~l~~I~~~~~~~iD~~~ 227 (333)
.+.||+.|||||+-.++..+.. ..+|+-=|-+|+ ||.=.. ...+++.+ +++.+.+.+....-+.+
T Consensus 34 ~D~vi~iGGDGT~L~a~~~~~~----~~iPilGIN~G~-------lGFL~~---~~~~~~~~~~~~~l~~~~~~~r~~L~ 99 (259)
T PRK00561 34 ADYLFVLGGDGFFVSTAANYNC----AGCKVVGINTGH-------LGFYTS---FNETDLDQNFANKLDQLKFTQIDLLE 99 (259)
T ss_pred CCEEEEECCcHHHHHHHHHhcC----CCCcEEEEecCC-------Cccccc---cCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 4789999999999888876643 456766677775 333221 11235666 77777655544444444
Q ss_pred Ee
Q 019940 228 IL 229 (333)
Q Consensus 228 V~ 229 (333)
+.
T Consensus 100 ~~ 101 (259)
T PRK00561 100 VQ 101 (259)
T ss_pred EE
Confidence 43
No 42
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.72 E-value=0.13 Score=49.07 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=42.6
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEE
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQID 224 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD 224 (333)
.+.||+.|||||+-.++..+... ..++|+-=|.+|+-.=|+ . +. .++++++++.|.+++.....
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~--~~~iPilGIN~G~lGFL~-~--~~-------~~~~~~~l~~i~~g~y~i~~ 99 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQ--LDKVRFVGVHTGHLGFYT-D--WR-------PFEVDKLVIALAKDPGQVVS 99 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhccc--CCCCeEEEEeCCCceecc-c--CC-------HHHHHHHHHHHHcCCceEEE
Confidence 46799999999998888776531 135665557777633332 1 11 24788899999998754433
No 43
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.25 E-value=0.17 Score=48.35 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTv 161 (333)
++.+++|+.. ....++..++.+.|. ..+ +.+.. .....+. . ..... .. .+.+.||++|||||+
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~g~~~~~~~-~~~~~~~-----~-----~~~~~-~~-~~~D~vi~lGGDGT~ 65 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-PDWEIIYEM-EAAKALG-----M-----DGLDI-EE-INADVIITIGGDGTI 65 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-cCCEEEEec-hhhhhcC-----c-----ccCcc-cc-cCCCEEEEEcCcHHH
Confidence 4778888744 456677778887663 232 11211 1111100 0 00000 00 135789999999999
Q ss_pred HHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEEEee
Q 019940 162 SWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (333)
Q Consensus 162 neVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~V~~ 230 (333)
-.++..+ ..|+--|-+|+- |.-.. ...+++.++|+.+.++...--.+..+..
T Consensus 66 L~a~~~~-------~~PilGIN~G~l-------GFL~~---~~~~~~~~~l~~i~~g~~~i~~r~~L~~ 117 (271)
T PRK01185 66 LRTLQRA-------KGPILGINMGGL-------GFLTE---IEIDEVGSAIKKLIRGEYFIDERMKLKV 117 (271)
T ss_pred HHHHHHc-------CCCEEEEECCCC-------ccCcc---cCHHHHHHHHHHHHcCCcEEEEeeEEEE
Confidence 7666543 124433577763 32221 1224788999999998754444444443
No 44
>PLN02727 NAD kinase
Probab=95.17 E-value=0.18 Score=55.46 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccC-cE-EEeeccChhhHHHHHHHHHHHhhh-ccchhhhhh-ccCc
Q 019940 75 RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN-QV-IDLGEKAPDKVLHQLYVTLEKFKA-AGDVFASEI-EKRL 150 (333)
Q Consensus 75 ~~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~-~v-~~l~~~~p~~~~~~~~~~l~~l~~-~g~~la~~~-~~~~ 150 (333)
+.-..|.+.++||.++.. ........+.+.|... .+ +.+.. ...+.+... ..+..... ..... .+. ...+
T Consensus 672 l~W~~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE~-~~a~~l~~~-~~~~~~~~~~~~~~-~el~~~~D 745 (986)
T PLN02727 672 LMWKSTPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVEP-DVHDIFARI-PGFGFVQTFYSQDT-SDLHERVD 745 (986)
T ss_pred eecCCCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEec-chHHHhhcc-ccccccceecccch-hhcccCCC
Confidence 445677899999999876 4556666777777653 33 22221 111111000 00000000 00000 011 2357
Q ss_pred EEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCe
Q 019940 151 RLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKE 220 (333)
Q Consensus 151 ~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~ 220 (333)
.||++|||||+-.++..+.. ..+||-=|-+|+ ||.=.. .+.+++.+.|+.|.++..
T Consensus 746 LVIvLGGDGTlLrAar~~~~----~~iPILGINlGr-------LGFLTd---i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 746 FVACLGGDGVILHASNLFRG----AVPPVVSFNLGS-------LGFLTS---HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEEECCcHHHHHHHHHhcC----CCCCEEEEeCCC-------cccccc---CCHHHHHHHHHHHHcCCc
Confidence 89999999999998887754 356765577775 443221 123467888998887763
No 45
>PLN02929 NADH kinase
Probab=94.31 E-value=0.29 Score=47.56 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=46.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCC---------cch--hhhcCCCCCCCCCchHHHHHHHHHHH
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG---------NNI--PFSFGWGKKNPNTDQQAVLSFLEQVK 216 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTG---------NDf--AR~LG~~~~~~~~~~~~~~~~l~~I~ 216 (333)
+.+.||++|||||+-.++..+ . ..+||-=|-.|+. |.| .|++|.=.. ...++++++|+.+.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~-~----~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~---~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL-D----DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCA---ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc-C----CCCcEEEEECCCcccccccccccccccccCcccccc---CCHHHHHHHHHHHH
Confidence 457899999999998887776 4 3456433566631 223 345664332 22457899999999
Q ss_pred cCCeEeEEEEEEe
Q 019940 217 NAKEMQIDSWHIL 229 (333)
Q Consensus 217 ~~~~~~iD~~~V~ 229 (333)
+|....-.+-.+.
T Consensus 136 ~g~~~~~~r~~L~ 148 (301)
T PLN02929 136 FGRLKPTELSRIS 148 (301)
T ss_pred cCCceEEEeeeEE
Confidence 9875443433333
No 46
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.24 E-value=0.33 Score=46.53 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=37.8
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc-CCeE
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN-AKEM 221 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~-~~~~ 221 (333)
.+.||++|||||+-.++..+.. ..+|+-=|-+|+ ||.=.. ...+++.+.++.+.+ ++..
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~----~~~PilgIn~G~-------lGFL~~---~~~~~~~~~l~~~~~~g~~~ 102 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAK----YDIPLIGINRGN-------LGFLTD---IDPKNAYEQLEACLERGEFF 102 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------Cccccc---CCHHHHHHHHHHHHhcCCce
Confidence 5789999999999888877654 345644457777 443221 112356667777776 6543
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=92.24 E-value=0.68 Score=43.75 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=36.9
Q ss_pred ccCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCC
Q 019940 147 EKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAK 219 (333)
Q Consensus 147 ~~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~ 219 (333)
.+.+.||++|||||+-.++..... ..+|+-=|-+|+ ||.=.. ....+++.+.++.+..+.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~----~~~PvlGIN~G~-------lGFL~~--~~~~~e~~~~l~~~~~~~ 83 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMN----SGKPVYGMNRGS-------VGFLMN--EYSEDDLLERIAAAEPTV 83 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcC----CCCeEEEEeCCC-------CCcccC--CCCHHHHHHHHHHhhcCc
Confidence 345789999999999888877654 356655577775 332110 011235666676666553
No 48
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=91.70 E-value=0.9 Score=45.99 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=37.3
Q ss_pred CcEEEEEcCchHHHHHHHHHhhC---C---CCCCCCEEEEeCCCCcchhhhcCC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDL---K---LPHSPPVATVPLGTGNNIPFSFGW 196 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~---~---~~~~~plgiIP~GTGNDfAR~LG~ 196 (333)
...|+|+|||-=++.||....+. + +..-+-+-+||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 56799999999999999876552 1 11345589999999 999999984
No 49
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=90.92 E-value=1.4 Score=42.29 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeEEEEE
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWH 227 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~ 227 (333)
..+.|++.|||||+-.++..+.. ..+|+-=|-.|+ ||.=.+. ..++++++++.+.+++.+-..+..
T Consensus 55 ~~d~ivvlGGDGtlL~~~~~~~~----~~~pilgin~G~-------lGFLt~~---~~~~~~~~~~~~~~~~~~~~~r~~ 120 (281)
T COG0061 55 KADLIVVLGGDGTLLRAARLLAR----LDIPVLGINLGH-------LGFLTDF---EPDELEKALDALLEGEYRIEERLL 120 (281)
T ss_pred CceEEEEeCCcHHHHHHHHHhcc----CCCCEEEEeCCC-------ccccccc---CHHHHHHHHHHHhcCceEEEEeEE
Confidence 45789999999999999887765 235555555553 3322211 134788999999887777666666
Q ss_pred Eeeee
Q 019940 228 ILMRM 232 (333)
Q Consensus 228 V~~~~ 232 (333)
+.+..
T Consensus 121 l~~~v 125 (281)
T COG0061 121 LEVSV 125 (281)
T ss_pred EEEEE
Confidence 66554
No 50
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=88.61 E-value=2 Score=42.63 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=26.9
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC--CCCcc
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNN 189 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~--GTGND 189 (333)
+.||++|| |++..+...+... ....+|+..||. |++.|
T Consensus 86 ~~IIAvGG-Gsv~D~ak~~A~~-~~rgip~I~IPTTlla~~d 125 (355)
T cd08197 86 SVIVALGG-GVVGNIAGLLAAL-LFRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred cEEEEECC-cHHHHHHHHHHHH-hccCCCEEEecCccccccc
Confidence 35777765 8999988776532 124689999998 66766
No 51
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=87.55 E-value=4.2 Score=39.54 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=26.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHh---hCC-CCCCCCEEEEeC--CCCcch
Q 019940 148 KRLRLIVAGGDGTASWLLGVVS---DLK-LPHSPPVATVPL--GTGNNI 190 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~---~~~-~~~~~plgiIP~--GTGNDf 190 (333)
+.+.||++|| |++..+...+. ... ....+|+..||. |||--.
T Consensus 78 ~~d~IiaiGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~ 125 (332)
T cd08180 78 KPDIVIALGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEV 125 (332)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhh
Confidence 4578999998 66666666442 111 224579999995 777544
No 52
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=87.29 E-value=4.7 Score=39.73 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhh-ccCcEEEEEcCch
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEI-EKRLRLIVAGGDG 159 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~-~~~~~IVv~GGDG 159 (333)
.++++|+..+.. ....+++.+...|....+..+....+..-++.+.+..+.+. +. ...+.||++|| |
T Consensus 23 ~~r~lvVtd~~~---~~~g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~~--------~~~~~~D~IIaiGG-G 90 (355)
T TIGR03405 23 GRRVVVVTFPEA---RALGLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARLW--------GDEGACDLVIALGG-G 90 (355)
T ss_pred CCeEEEEECcch---hhcchHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHHH--------hcCCCCCEEEEeCC-c
Confidence 367888876543 22246667777775433322222111111221222222111 11 12577888888 7
Q ss_pred HHHHHHHHHhhC---C----------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 160 TASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 160 TvneVln~l~~~---~----------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
++..+...+.-. . ....+|+..||. |||-...+.
T Consensus 91 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 91 SVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred cHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 777666544211 0 113578999996 777666554
No 53
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=86.10 E-value=4.6 Score=40.08 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=30.3
Q ss_pred cCcEEEEEcCchHHHHHHHHHhh---C------------CCCCCCCEEEEeC--CCCcchhhhcC
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSD---L------------KLPHSPPVATVPL--GTGNNIPFSFG 195 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~---~------------~~~~~~plgiIP~--GTGNDfAR~LG 195 (333)
+.+.||++|| |++..+...+.- . .....+|+..||. |||-...+.--
T Consensus 85 ~~D~IIavGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 85 GCDFIISIGG-GSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 4577888888 677776655421 0 0124689999997 88876655443
No 54
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=84.98 E-value=4.5 Score=39.84 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhcc-C--cEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNE-N--QVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~-~--~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGD 158 (333)
++++|+..+..-. .+.+.+.+.|.. . .++.+....+..-++.+.+.++.+.+.+ ....+.||++||
T Consensus 24 ~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~------~~r~d~IIaiGG- 92 (344)
T cd08169 24 DQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALG------ANRRTAIVAVGG- 92 (344)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCcEEEEECC-
Confidence 6788887754432 355666666643 2 2322222111111221222222222111 123456777776
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 159 GTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 159 GTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
|++..+...+... ....+|+-.||.
T Consensus 93 Gsv~D~ak~vA~~-~~rgip~i~VPT 117 (344)
T cd08169 93 GATGDVAGFVAST-LFRGIAFIRVPT 117 (344)
T ss_pred cHHHHHHHHHHHH-hccCCcEEEecC
Confidence 8888888776531 124688999997
No 55
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=84.11 E-value=7.9 Score=38.61 Aligned_cols=125 Identities=11% Similarity=0.112 Sum_probs=62.2
Q ss_pred cccccCeeeecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE--EEeeccChhhHHHHHHHHH
Q 019940 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV--IDLGEKAPDKVLHQLYVTL 132 (333)
Q Consensus 59 ~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v--~~l~~~~p~~~~~~~~~~l 132 (333)
.|.+|.+++.-... .. .......++++|+.-+.. ....+++.+++.|.+..+ .......|..-.+.+.+.+
T Consensus 5 ~~~~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~ 81 (383)
T PRK09860 5 TFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGL 81 (383)
T ss_pred ccccCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHH
Confidence 46678887765421 11 111223367777654311 223456677777764332 2222221111112232333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhh---C------------CCCCCCCEEEEeC--CCCcchhhhcC
Q 019940 133 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---L------------KLPHSPPVATVPL--GTGNNIPFSFG 195 (333)
Q Consensus 133 ~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~---~------------~~~~~~plgiIP~--GTGNDfAR~LG 195 (333)
+.. + ..+.+.||++|| |++-.+...+.- . .....+|+..||. |||-...+.--
T Consensus 82 ~~~--------~-~~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~av 151 (383)
T PRK09860 82 KLL--------K-ENNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCI 151 (383)
T ss_pred HHH--------H-HcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEE
Confidence 221 1 134578999998 455555544321 0 0124579999997 88887666554
Q ss_pred C
Q 019940 196 W 196 (333)
Q Consensus 196 ~ 196 (333)
+
T Consensus 152 i 152 (383)
T PRK09860 152 I 152 (383)
T ss_pred E
Confidence 4
No 56
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=83.18 E-value=5.9 Score=39.27 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=56.4
Q ss_pred ccccCeeeecCC-ccccccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEeeccChhhHHHHHHHHHHH
Q 019940 60 YYIPNYILVSGS-EVQRSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEK 134 (333)
Q Consensus 60 ~~ip~~~~~~~~-~~~~~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v--~~l~~~~p~~~~~~~~~~l~~ 134 (333)
|..|..++.-.. ...+... ..++++|+.-+.+-. ...+++.+.+.|++.. + |+-....|.. +.+.+.++.
T Consensus 2 ~~~p~~i~~G~g~l~~l~~~-~~~r~livt~~~~~~--~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~~v~~~~~~ 76 (375)
T cd08179 2 FTLPRDIYFGKGSLEYLKTL-KGKKAFIVTGGGSMK--KFGFLDKVEAYLKEAGIEVEVFEGVEPDPSV--ETVLKGAEA 76 (375)
T ss_pred ccCCceEEECcCHHHHHHHh-cCCeEEEEeCchHHH--hCChHHHHHHHHHHcCCeEEEeCCCCCCcCH--HHHHHHHHH
Confidence 556777665432 1111111 236677776543321 1235566666665422 2 2211122321 112222221
Q ss_pred hhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhh---CC---------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 135 FKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---LK---------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 135 l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~---~~---------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+ ++ .+.+.||++|| |++..+...+.- .. ....+|+..||. |||--..+.
T Consensus 77 ~--------~~-~~~D~IIavGG-GSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~ 145 (375)
T cd08179 77 M--------RE-FEPDWIIALGG-GSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAF 145 (375)
T ss_pred H--------Hh-cCCCEEEEeCC-ccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCe
Confidence 1 11 24577888888 666666554421 00 013468999996 777655443
No 57
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.89 E-value=8.8 Score=37.58 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=51.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEE--eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQVID--LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~--l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
++++||..+.. ...+++.+++.|....+.. .......+.++++...+. ..+.+.||++|| |
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~------------~~~~D~iIavGG-G 86 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAK------------ENGADVIIGIGG-G 86 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHH------------hcCCCEEEEeCC-c
Confidence 67888887666 2356777777775433311 121212222222222211 123567888887 8
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeC--CCCcchh
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 191 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~--GTGNDfA 191 (333)
++..+...+... ..+|+..||. |||-..+
T Consensus 87 s~~D~aK~ia~~---~~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 87 KVLDTAKAVADR---LGVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHHHHHHHHHHH---hCCCEEEecCccccCcccc
Confidence 898888877542 2578999996 6665554
No 58
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.85 E-value=2.3 Score=41.61 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v--~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GG 157 (333)
++++||..+.+- ...++.+.+.|.... + |+.....|. .+.+.+..+. ++ ..+.+.||++||
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~--~~~v~~~~~~--------~~-~~~~d~iiavGG 87 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGEST--YENVERLKKN--------PA-VQEADMIFAVGG 87 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCC--HHHHHHHHHH--------Hh-hcCCCEEEEeCC
Confidence 678888765442 234667777775432 2 322222221 1112222211 11 124577888988
Q ss_pred chHHHHHHHHHhhCCCCCCCCEEEEeC--CCCcc
Q 019940 158 DGTASWLLGVVSDLKLPHSPPVATVPL--GTGNN 189 (333)
Q Consensus 158 DGTvneVln~l~~~~~~~~~plgiIP~--GTGND 189 (333)
|++..+...+... ..+|+..||. |||--
T Consensus 88 -Gs~~D~aK~ia~~---~~~p~i~VPTt~gtgse 117 (345)
T cd08171 88 -GKAIDTVKVLADK---LGKPVFTFPTIASNCAA 117 (345)
T ss_pred -cHHHHHHHHHHHH---cCCCEEEecCccccCcc
Confidence 8888888777542 2578999996 55543
No 59
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=82.70 E-value=4.9 Score=39.36 Aligned_cols=92 Identities=20% Similarity=0.306 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccC----cEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEc
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNEN----QVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAG 156 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~----~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~G 156 (333)
.++++||..+..-. .+.+.+.+.|... .++.+....+..-++.+.+.++.+.+.+ ....+.||++|
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~------~~r~d~IIaiG 93 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAG------LDRKSLIIALG 93 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcC------CCCCCeEEEEC
Confidence 36788888766542 3566677666542 2232322112211222333333222111 12235677777
Q ss_pred CchHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 157 GDGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 157 GDGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
| |++..+...+... ....+|+..||.
T Consensus 94 G-Gsv~D~ak~vA~~-~~rgip~i~VPT 119 (345)
T cd08195 94 G-GVVGDLAGFVAAT-YMRGIDFIQIPT 119 (345)
T ss_pred C-hHHHhHHHHHHHH-HhcCCCeEEcch
Confidence 6 8888888766521 124688888886
No 60
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=82.39 E-value=6.1 Score=38.94 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCc----EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEc
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAG 156 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~----v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~G 156 (333)
.++++||..+... ..+.+.+.+.|.... ++.+....+..-++.+.+.++.+.+.+ ..+.+.||++|
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~------~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAG------LDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCCEEEEEc
Confidence 4678888875552 236677777775432 222222111111222223332221111 11236677777
Q ss_pred CchHHHHHHHHHhhCCCCCCCCEEEEeC--CCCcc
Q 019940 157 GDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNN 189 (333)
Q Consensus 157 GDGTvneVln~l~~~~~~~~~plgiIP~--GTGND 189 (333)
| |++..+...+... ....+|+..||. ++.+|
T Consensus 101 G-Gsv~D~aK~iA~~-~~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 101 G-GVIGDLAGFAAAT-YMRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred C-cHHHHHHHHHHHH-hcCCCCEEEcCchhhhccc
Confidence 6 8888888776521 124688999997 34444
No 61
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=82.35 E-value=8.6 Score=37.13 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhcc-CcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNE-NQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 160 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~-~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGT 160 (333)
++++||..+..-. .+.+.+.+.|.+ ..+.......+..-.+.+.+.++.+. + .+.+.||++|| |+
T Consensus 24 ~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--------~-~~~d~IIaiGG-Gs 89 (332)
T cd07766 24 DRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERAR--------A-AEVDAVIAVGG-GS 89 (332)
T ss_pred CeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHH--------h-cCcCEEEEeCC-ch
Confidence 5788887655533 455556666644 22221221111111121222222211 1 23567777776 88
Q ss_pred HHHHHHHHhhCCCCCCCCEEEEeC--CCC
Q 019940 161 ASWLLGVVSDLKLPHSPPVATVPL--GTG 187 (333)
Q Consensus 161 vneVln~l~~~~~~~~~plgiIP~--GTG 187 (333)
+..+...+... ..+.+|+..||. |||
T Consensus 90 ~~D~aK~ia~~-~~~~~p~i~iPTt~~tg 117 (332)
T cd07766 90 TLDTAKAVAAL-LNRGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEeCCCchh
Confidence 88888776542 124789999997 554
No 62
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=81.33 E-value=11 Score=37.21 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=30.1
Q ss_pred cCcEEEEEcCchHHHHHHHHHhh-------------CC-CCCCCCEEEEeC--CCCcchhhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSD-------------LK-LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~-------------~~-~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+.+.||++|| |++..+...+.- .. ....+|+..||. |||...++.
T Consensus 83 ~~D~IIavGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 83 NADFVIGIGG-GSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 4577888888 777777765421 00 124689999997 888777664
No 63
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=80.93 E-value=11 Score=37.41 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v--~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GG 157 (333)
++++||.-+.+- +...+++++.+.|.... + |+-....|.. +.+.+.++.+ ++ .+.+.||++||
T Consensus 26 ~r~livt~~~~~--~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~~v~~~~~~~--------~~-~~~D~IiavGG 92 (380)
T cd08185 26 KKALIVTGNGSS--KKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--TTVMEGAALA--------RE-EGCDFVVGLGG 92 (380)
T ss_pred CeEEEEeCCCch--hhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--HHHHHHHHHH--------HH-cCCCEEEEeCC
Confidence 678888876552 12346666777665432 2 2211122221 1122222211 11 24578888988
Q ss_pred chHHHHHHHHHhhC-------------------C-CCCCCCEEEEeC--CCCcchhhhcCC
Q 019940 158 DGTASWLLGVVSDL-------------------K-LPHSPPVATVPL--GTGNNIPFSFGW 196 (333)
Q Consensus 158 DGTvneVln~l~~~-------------------~-~~~~~plgiIP~--GTGNDfAR~LG~ 196 (333)
|++..+...+.-. . ....+|+..||. |||.-..+.-.+
T Consensus 93 -GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi 152 (380)
T cd08185 93 -GSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVI 152 (380)
T ss_pred -ccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEE
Confidence 6666666554210 0 113588999995 787765554433
No 64
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=80.56 E-value=7.6 Score=38.34 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=61.1
Q ss_pred ccccccCeeeecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E-EEeeccCh-hhHHHHHH
Q 019940 58 NNYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V-IDLGEKAP-DKVLHQLY 129 (333)
Q Consensus 58 ~~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v-~~l~~~~p-~~~~~~~~ 129 (333)
+.|.+|..++.-... .. ...... ++++||.-+..- ..+++++...|.... + ++.....| .+.++++.
T Consensus 3 ~~f~~p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~ 77 (366)
T PRK09423 3 RIFISPSKYVQGKGALARLGEYLKPLG-KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLV 77 (366)
T ss_pred ccccCCceEEECCCHHHHHHHHHHHcC-CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHH
Confidence 457778877764321 11 111122 678888754432 236677777775432 2 32222222 22222222
Q ss_pred HHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC--CCCcchhh
Q 019940 130 VTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIPF 192 (333)
Q Consensus 130 ~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~--GTGNDfAR 192 (333)
..+ ++ .+.+.||++|| |++..+...+.-. ..+|+..||. |||-....
T Consensus 78 ~~~-----------~~-~~~d~IIavGG-Gsv~D~aK~iA~~---~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 78 AIA-----------EE-NGCDVVIGIGG-GKTLDTAKAVADY---LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HHH-----------Hh-cCCCEEEEecC-hHHHHHHHHHHHH---cCCCEEEeCCccccCccccC
Confidence 221 11 24578888988 7888888777532 3678999996 55554443
No 65
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=80.35 E-value=14 Score=36.84 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=61.1
Q ss_pred ccccccCeeeecCCc-ccc---ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCc----EEEeeccChhhHHHHHH
Q 019940 58 NNYYIPNYILVSGSE-VQR---SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLGEKAPDKVLHQLY 129 (333)
Q Consensus 58 ~~~~ip~~~~~~~~~-~~~---~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~----v~~l~~~~p~~~~~~~~ 129 (333)
..|..|+.++.-... ..+ ......++++|+.-+..-. ..+++++...|.+.. +|+-....|. .+.+.
T Consensus 3 ~~~~~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~--~~~v~ 77 (382)
T PRK10624 3 NRMILNETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPT--IEVVK 77 (382)
T ss_pred ccccCCCeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcC--HHHHH
Confidence 457778887764321 111 1122336788877653221 235666666665422 2321112231 22222
Q ss_pred HHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHh---hCC--------------CCCCCCEEEEeC--CCCcch
Q 019940 130 VTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK--------------LPHSPPVATVPL--GTGNNI 190 (333)
Q Consensus 130 ~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~---~~~--------------~~~~~plgiIP~--GTGNDf 190 (333)
+.++.+. + .+.+.||++|| |++..+...+. ... ....+|+..||. |||-..
T Consensus 78 ~~~~~~~--------~-~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~ 147 (382)
T PRK10624 78 EGVEVFK--------A-SGADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEV 147 (382)
T ss_pred HHHHHHH--------h-cCCCEEEEeCC-hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhh
Confidence 2222111 1 24567888888 67777665432 100 123579999996 777666
Q ss_pred hhhcC
Q 019940 191 PFSFG 195 (333)
Q Consensus 191 AR~LG 195 (333)
.+...
T Consensus 148 t~~av 152 (382)
T PRK10624 148 TINYV 152 (382)
T ss_pred cceee
Confidence 55443
No 66
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=80.26 E-value=9 Score=37.36 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccC-cEEEeeccCh-hhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNEN-QVIDLGEKAP-DKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~-~v~~l~~~~p-~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
++++||..+... ..+++.++..|... .+..+....| .+.++++.+.+ . + .+.+.||++|| |
T Consensus 26 ~~~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~---~--------~-~~~d~iIaiGG-G 88 (339)
T cd08173 26 GRVLVVTGPTTK----SIAGKKVEALLEDEGEVDVVIVEDATYEEVEKVESSA---R--------D-IGADFVIGVGG-G 88 (339)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHh---h--------h-cCCCEEEEeCC-c
Confidence 678888865543 24666677766543 2211122222 22222222221 1 1 23467888887 8
Q ss_pred HHHHHHHHHhhCCCCCCCCEEEEeCCCC
Q 019940 160 TASWLLGVVSDLKLPHSPPVATVPLGTG 187 (333)
Q Consensus 160 TvneVln~l~~~~~~~~~plgiIP~GTG 187 (333)
++..+...+.-. ..+|+..||.=.+
T Consensus 89 s~~D~aK~~a~~---~~~p~i~iPTT~~ 113 (339)
T cd08173 89 RVIDVAKVAAYK---LGIPFISVPTAAS 113 (339)
T ss_pred hHHHHHHHHHHh---cCCCEEEecCccc
Confidence 999988877632 4688999996444
No 67
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=79.79 E-value=7.7 Score=37.86 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v--~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GG 157 (333)
++++|+..+..- ....+.+.+.|.... + +.+....+..-++.+.+.++.+.+.+ ....+.||++||
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~------~~r~d~IIavGG 90 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAG------LDRSSTIIALGG 90 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCCEEEEEcC
Confidence 678888865442 235666777775432 2 22222111111222223332221111 112366888877
Q ss_pred chHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 158 DGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 158 DGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
|++..+...+... ....+|+..||.
T Consensus 91 -Gsv~D~aK~iA~~-~~~~~p~i~VPT 115 (344)
T TIGR01357 91 -GVVGDLAGFVAAT-YMRGIRFIQVPT 115 (344)
T ss_pred -hHHHHHHHHHHHH-HccCCCEEEecC
Confidence 8888888776421 124678999997
No 68
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=79.10 E-value=1.5 Score=43.04 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=41.5
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEE--eCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeEeE
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATV--PLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQI 223 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiI--P~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~~~i 223 (333)
..+.||-+|||||+-....-+.+ +..|.|||= |.|+---+. +|..+|. ++..+|..+..|..+-+
T Consensus 105 waD~VisvGGDGTfL~Aasrv~~---~~~PViGvNtDP~~Seg~lc----L~~~~~~----n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 105 WADMVISVGGDGTFLLAASRVID---DSKPVIGVNTDPTGSEGHLC----LPDKYPS----NPAGALCKLTSGNFEWV 171 (395)
T ss_pred hhhEEEEecCccceeehhhhhhc---cCCceeeecCCCCcCcceEe----ccccCCC----CcHHHHHHHHhccHHHh
Confidence 34679999999999877764443 245667763 566544433 3444442 56677887777766444
No 69
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=78.32 E-value=11 Score=36.98 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=27.4
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhC---C------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDL---K------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~---~------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+.+.||++|| |++..+...+.-. . ....+|+..||. |||--..+.
T Consensus 80 ~~d~IiaiGG-Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~ 141 (370)
T cd08551 80 GCDGVIAVGG-GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPF 141 (370)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCe
Confidence 3467888888 6777766554311 0 113689999997 666443333
No 70
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=78.07 E-value=12 Score=37.04 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=60.5
Q ss_pred cccccCeeeecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccC--cEEEeeccChhhHHHHHHHHH
Q 019940 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QVIDLGEKAPDKVLHQLYVTL 132 (333)
Q Consensus 59 ~~~ip~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~--~v~~l~~~~p~~~~~~~~~~l 132 (333)
+|..|..++.-... .. ..... .++++|+.-+.+... ..+++++++.|... .+..+....+..-.+.+.+.+
T Consensus 3 ~~~~p~~i~~G~g~~~~l~~~~~~~-~~r~livt~~~~~~~--~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~ 79 (382)
T cd08187 3 TFYNPTKIIFGKGTESELGKELKKY-GKKVLLVYGGGSIKK--NGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGI 79 (382)
T ss_pred eecCCCEEEECCCHHHHHHHHHHHh-CCEEEEEeCCcHHHh--cCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 35567766654321 11 11111 367888866554422 23456666666542 232222211111111122222
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhhC--------------C-CCCCCCEEEEeC--CCCcchhhhc
Q 019940 133 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDL--------------K-LPHSPPVATVPL--GTGNNIPFSF 194 (333)
Q Consensus 133 ~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~~--------------~-~~~~~plgiIP~--GTGNDfAR~L 194 (333)
+.++ ..+.+.||++|| |++..+...+.-. . ....+|+-.||. |||--..+.-
T Consensus 80 ~~~~---------~~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~a 148 (382)
T cd08187 80 ELCK---------EEKVDFILAVGG-GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGA 148 (382)
T ss_pred HHHH---------HcCCCEEEEeCC-hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCE
Confidence 2211 124578999998 7777777654221 0 124579999996 7776555443
No 71
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=78.05 E-value=9.4 Score=33.47 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=41.5
Q ss_pred CCCChhhHHHHHHHHhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhhC
Q 019940 93 GGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDL 171 (333)
Q Consensus 93 G~~~g~~~~~~l~~~L~~~~v-~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~~ 171 (333)
|+..-..+.++....|.+..+ +++.-.......+++.+.++++... .-...|.++|+++-|--|+.++..
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~--------~~~viIa~AG~~a~Lpgvva~~t~- 78 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEAR--------GADVIIAVAGMSAALPGVVASLTT- 78 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTT--------TESEEEEEEESS--HHHHHHHHSS-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccC--------CCEEEEEECCCcccchhhheeccC-
Confidence 444445567777777776655 5554422222122233333322110 112468899999999999998863
Q ss_pred CCCCCCCEEEEeCCCC
Q 019940 172 KLPHSPPVATVPLGTG 187 (333)
Q Consensus 172 ~~~~~~plgiIP~GTG 187 (333)
.|.||+ |.-++
T Consensus 79 ----~PVIgv-P~~~~ 89 (150)
T PF00731_consen 79 ----LPVIGV-PVSSG 89 (150)
T ss_dssp ----S-EEEE-EE-ST
T ss_pred ----CCEEEe-ecCcc
Confidence 456776 76554
No 72
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=77.59 E-value=10 Score=37.74 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCc--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDG 159 (333)
++++|+..+.+-... .+++.+...|.... +..+....+..-.+.+.+.++.+. ..+.+.||++|| |
T Consensus 27 kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~---------~~~~D~IIaiGG-G 94 (383)
T cd08186 27 SKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR---------EFGAQAVIAIGG-G 94 (383)
T ss_pred CEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH---------HcCCCEEEEeCC-c
Confidence 678888766553222 34556666665432 221221111111121222222211 123577888998 6
Q ss_pred HHHHHHHHHhh---CC-------------CCCCCCEEEEeC--CCCcchhhhcC
Q 019940 160 TASWLLGVVSD---LK-------------LPHSPPVATVPL--GTGNNIPFSFG 195 (333)
Q Consensus 160 TvneVln~l~~---~~-------------~~~~~plgiIP~--GTGNDfAR~LG 195 (333)
++..+...+.- .. ....+|+..||. |||...++.--
T Consensus 95 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~av 148 (383)
T cd08186 95 SPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFAV 148 (383)
T ss_pred cHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeEE
Confidence 77776655421 00 013578999997 88776655443
No 73
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=77.07 E-value=17 Score=36.00 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=59.9
Q ss_pred cccccCeeeecCCc-ccc---ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCc--EEEeeccChhhHHHHHHHHH
Q 019940 59 NYYIPNYILVSGSE-VQR---SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTL 132 (333)
Q Consensus 59 ~~~ip~~~~~~~~~-~~~---~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v~~l~~~~p~~~~~~~~~~l 132 (333)
+|.+|..++.-... ..+ ......++++|+..+..- ...+++.+++.|.... +.......+..-.+.+.+.+
T Consensus 3 ~~~~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~---~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~ 79 (379)
T TIGR02638 3 RLILNETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLI---KFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGV 79 (379)
T ss_pred cccCCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchh---hccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHH
Confidence 46778887765421 111 112233678888765332 1225666666665422 22122111111122222222
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHhh---CC--------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 133 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---LK--------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 133 ~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~---~~--------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+.+. + .+.+.||++|| |++..+..++.- .. ....+|+..||. |||-...+.
T Consensus 80 ~~~~--------~-~~~D~IiaiGG-GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~ 149 (379)
T TIGR02638 80 AAFK--------A-SGADYLIAIGG-GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTIN 149 (379)
T ss_pred HHHH--------h-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCE
Confidence 2111 1 24577888888 666666644321 00 114578999997 777655544
Q ss_pred c
Q 019940 194 F 194 (333)
Q Consensus 194 L 194 (333)
.
T Consensus 150 a 150 (379)
T TIGR02638 150 Y 150 (379)
T ss_pred E
Confidence 4
No 74
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.95 E-value=8.8 Score=37.55 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcE---EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV---IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v---~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGD 158 (333)
++++|+.-+.+ ...+++.+...|....+ ++.....|.. +.+.+.++.+ ++ .+.+.||++||
T Consensus 23 ~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~--~~v~~~~~~~--------~~-~~~D~IIavGG- 86 (351)
T cd08170 23 KRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGECTR--AEIERLAEIA--------RD-NGADVVIGIGG- 86 (351)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcCCH--HHHHHHHHHH--------hh-cCCCEEEEecC-
Confidence 67777763333 22567777777765322 2222222221 1122222211 11 24578999998
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEeC--CCCcchhh
Q 019940 159 GTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIPF 192 (333)
Q Consensus 159 GTvneVln~l~~~~~~~~~plgiIP~--GTGNDfAR 192 (333)
|++..+...+.-. ..+|+..||. |||--...
T Consensus 87 GS~iD~aK~ia~~---~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 87 GKTLDTAKAVADY---LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred chhhHHHHHHHHH---cCCCEEEeCCccccCccccc
Confidence 7777777766532 3578999996 67665544
No 75
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=75.16 E-value=19 Score=35.64 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v--~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GG 157 (333)
++++||..+.+- ....++.+.+.|.+.. + |+-....|. .+.+.+.++.+. ..+.+.||++||
T Consensus 24 ~r~livt~~~~~---~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~--~~~v~~~~~~~~---------~~~~D~IIaiGG 89 (375)
T cd08194 24 KRPLIVTDKVMV---KLGLVDKLTDSLKKEGIESAIFDDVVSEPT--DESVEEGVKLAK---------EGGCDVIIALGG 89 (375)
T ss_pred CeEEEEcCcchh---hcchHHHHHHHHHHCCCeEEEECCCCCCcC--HHHHHHHHHHHH---------hcCCCEEEEeCC
Confidence 578888765443 1225566777775432 2 221112232 222323322211 124567888888
Q ss_pred chHHHHHHHHHhh---C-----------C-CCCCCCEEEEeC--CCCcchh
Q 019940 158 DGTASWLLGVVSD---L-----------K-LPHSPPVATVPL--GTGNNIP 191 (333)
Q Consensus 158 DGTvneVln~l~~---~-----------~-~~~~~plgiIP~--GTGNDfA 191 (333)
|++..+...+.- . . ....+|+..||. |||--..
T Consensus 90 -GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 90 -GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred -chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 777776655431 0 0 124578999996 6665443
No 76
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=74.60 E-value=15 Score=36.52 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=27.3
Q ss_pred cCcEEEEEcCchHHHHHHHHH---hhCC------------CCCCCCEEEEeC--CCCcchhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVV---SDLK------------LPHSPPVATVPL--GTGNNIPF 192 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l---~~~~------------~~~~~plgiIP~--GTGNDfAR 192 (333)
+.+.||++|| |++..+...+ .... ....+|+..||. |||--.++
T Consensus 85 ~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 85 GCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 4577888888 6666666433 1110 012478999997 77765555
No 77
>PRK15138 aldehyde reductase; Provisional
Probab=73.76 E-value=18 Score=36.12 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=59.8
Q ss_pred cccccCeeeecCCc-ccccc-CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhh
Q 019940 59 NYYIPNYILVSGSE-VQRSS-LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFK 136 (333)
Q Consensus 59 ~~~ip~~~~~~~~~-~~~~~-~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~ 136 (333)
+|..|..++.-... ..+.. ....++++||.-+.+= +...+++++...|....+.......+..-.+.+.+.++..
T Consensus 5 ~~~~P~~i~~G~g~~~~l~~~l~~~~~~livt~~~~~--~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~- 81 (387)
T PRK15138 5 NLHTPTRILFGKGAIAGLREQIPADARVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKLV- 81 (387)
T ss_pred EEeCCceEEECcCHHHHHHHHHhcCCeEEEECCCchH--HhcCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHHH-
Confidence 45567777765321 11101 0112667776543331 2234566677777543332222211211122222222211
Q ss_pred hccchhhhhhccCcEEEEEcCchHHHHHHHHHhh---C---------------CCCCCCCEEEEeC--CCCcchhhhcCC
Q 019940 137 AAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---L---------------KLPHSPPVATVPL--GTGNNIPFSFGW 196 (333)
Q Consensus 137 ~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~~---~---------------~~~~~~plgiIP~--GTGNDfAR~LG~ 196 (333)
++ .+.+.||++|| |++-.+...+.- . .....+|+..||. |||-.....--+
T Consensus 82 -------~~-~~~D~IIaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~avi 152 (387)
T PRK15138 82 -------RE-EKITFLLAVGG-GSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGAVI 152 (387)
T ss_pred -------HH-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCEEE
Confidence 11 24578999998 555555444321 0 0113478999997 888766655443
No 78
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=72.24 E-value=21 Score=34.79 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCc--EEEeeccCh-hhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAP-DKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v~~l~~~~p-~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGD 158 (333)
++++|+..+. -...+++.+.+.|.... +|+-....| .+.++ +.++.+. ..+.+.||++||
T Consensus 24 ~~~livt~~~----~~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~---~~~~~~~---------~~~~d~IIaiGG- 86 (337)
T cd08177 24 SRALVLTTPS----LATKLAERVASALGDRVAGTFDGAVMHTPVEVTE---AAVAAAR---------EAGADGIVAIGG- 86 (337)
T ss_pred CeEEEEcChH----HHHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHH---HHHHHHH---------hcCCCEEEEeCC-
Confidence 5677775432 22236777777776543 332211222 22222 2222111 123467888887
Q ss_pred hHHHHHHHHHhhCCCCCCCCEEEEeC-CCCcc
Q 019940 159 GTASWLLGVVSDLKLPHSPPVATVPL-GTGNN 189 (333)
Q Consensus 159 GTvneVln~l~~~~~~~~~plgiIP~-GTGND 189 (333)
|++..+...+.-. ..+|+..||. -||..
T Consensus 87 Gs~iD~aK~ia~~---~~~p~i~IPTtatgse 115 (337)
T cd08177 87 GSTIDLAKAIALR---TGLPIIAIPTTLSGSE 115 (337)
T ss_pred cHHHHHHHHHHHH---hcCCEEEEcCCchhhh
Confidence 8999888877532 2578999984 25443
No 79
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=71.89 E-value=15 Score=35.89 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=28.5
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC--CCCcchh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 191 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~--GTGNDfA 191 (333)
+.+.||++|| |++..+...+... ..+|+..||. |||-...
T Consensus 77 ~~d~IIavGG-Gs~~D~aK~ia~~---~~~p~i~VPTtagtgse~t 118 (349)
T cd08550 77 EADVIIGVGG-GKTLDTAKAVADR---LDKPIVIVPTIASTCAASS 118 (349)
T ss_pred CCCEEEEecC-cHHHHHHHHHHHH---cCCCEEEeCCccccCcccc
Confidence 3567888887 8888888877542 3578999997 6664433
No 80
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=70.86 E-value=18 Score=35.73 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=22.6
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
+.||++|| |++..+...+... ....+|+-.||.
T Consensus 90 d~IVaiGG-G~v~D~ak~~A~~-~~rg~p~i~VPT 122 (354)
T cd08199 90 EPVLAIGG-GVLTDVAGLAASL-YRRGTPYVRIPT 122 (354)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-hcCCCCEEEEcC
Confidence 56666666 8888888877531 124678888887
No 81
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=69.92 E-value=32 Score=34.52 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=59.9
Q ss_pred ccccccCeeeecCCc-ccc---ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcE----EEeeccChhhHHHHHH
Q 019940 58 NNYYIPNYILVSGSE-VQR---SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV----IDLGEKAPDKVLHQLY 129 (333)
Q Consensus 58 ~~~~ip~~~~~~~~~-~~~---~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v----~~l~~~~p~~~~~~~~ 129 (333)
..|..|..++.-... ..+ ......++++|+.-+. -....++++++..|.+..+ |+-....|.. +.+.
T Consensus 22 ~~f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~---~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~--~~v~ 96 (395)
T PRK15454 22 KTFSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADSF---LHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI--TDVC 96 (395)
T ss_pred ceeecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcc---hhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH--HHHH
Confidence 467788888765432 111 1122235555553321 1223456677777765332 2111123322 1122
Q ss_pred HHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHh---hCC------------CCCCCCEEEEeC--CCCcchhh
Q 019940 130 VTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK------------LPHSPPVATVPL--GTGNNIPF 192 (333)
Q Consensus 130 ~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~---~~~------------~~~~~plgiIP~--GTGNDfAR 192 (333)
+.++. +++ .+.+.||++|| |++-.+...+. ... ....+|+..||. |||-...+
T Consensus 97 ~~~~~--------~r~-~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~ 166 (395)
T PRK15454 97 AAVAQ--------LRE-SGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTN 166 (395)
T ss_pred HHHHH--------HHh-cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCC
Confidence 22221 111 34678999998 45544443321 110 113578999996 77776665
Q ss_pred hcCC
Q 019940 193 SFGW 196 (333)
Q Consensus 193 ~LG~ 196 (333)
.--+
T Consensus 167 ~avi 170 (395)
T PRK15454 167 VTVI 170 (395)
T ss_pred eEEE
Confidence 5443
No 82
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=68.83 E-value=26 Score=34.49 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=26.4
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhC---C----------------CCCCCCEEEEeC--CCCcchh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNIP 191 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~---~----------------~~~~~plgiIP~--GTGNDfA 191 (333)
+.+.||++|| |++..+...+.-. . ....+|+..||. |||-...
T Consensus 81 ~~d~IIaiGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t 144 (370)
T cd08192 81 GCDGVIAFGG-GSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVG 144 (370)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhC
Confidence 4577888888 7777777654321 0 013478999997 5554433
No 83
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=68.35 E-value=26 Score=34.43 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=26.1
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcc
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNN 189 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGND 189 (333)
.+.||++|| |++..+...+.-. ..+|+-.||.=-++|
T Consensus 88 ~d~IIaiGG-Gsv~D~ak~vA~~---rgip~I~IPTT~~td 124 (350)
T PRK00843 88 AGFLIGVGG-GKVIDVAKLAAYR---LGIPFISVPTAASHD 124 (350)
T ss_pred CCEEEEeCC-chHHHHHHHHHHh---cCCCEEEeCCCccCC
Confidence 467888887 8999888877532 467888888544333
No 84
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=68.22 E-value=17 Score=37.48 Aligned_cols=47 Identities=32% Similarity=0.417 Sum_probs=33.7
Q ss_pred cEEEEEcCchHHHHHHH---HHhhCCCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 019940 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln---~l~~~~~~~~~plgiIP~GTGNDfA---R~LG~~~ 198 (333)
+.++++|||||+.-+.. .+.+. ..++++--||-==-||+. +++|...
T Consensus 178 ~~L~vIGGdgT~~~A~~L~ee~~~~--g~~I~VIGIPKTIDNDI~~td~S~GFdT 230 (459)
T PTZ00286 178 NILFTLGGDGTHRGALAIYKELRRR--KLNISVVGIPKTIDNDIPIIDESFGFQT 230 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCCCcccCcCchH
Confidence 57999999999986543 22222 235888999999999987 5566554
No 85
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=67.93 E-value=20 Score=35.21 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=29.4
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+..+ +.|.+ ..+++--||.==-||+.
T Consensus 95 Id~LivIGGdgS~~~a-~~L~~----~gi~vigiPkTIDNDl~ 132 (324)
T TIGR02483 95 LDALIAIGGDGTLGIA-RRLAD----KGLPVVGVPKTIDNDLE 132 (324)
T ss_pred CCEEEEECCchHHHHH-HHHHh----cCCCEEeeccccCCCCc
Confidence 3579999999999755 34544 34788889988899996
No 86
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=67.36 E-value=41 Score=32.60 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=26.1
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 187 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTG 187 (333)
.+.||++|| |++..+...+... ..+|+..||.=.+
T Consensus 76 ~d~iIaiGG-Gsv~D~aK~vA~~---~~~p~i~vPTt~~ 110 (331)
T cd08174 76 VDAVVGIGG-GKVIDVAKYAAFL---RGIPLSVPTTNLN 110 (331)
T ss_pred CCEEEEeCC-cHHHHHHHHHHhh---cCCCEEEecCccc
Confidence 467888887 8999988877642 5688999996333
No 87
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=65.96 E-value=28 Score=33.86 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=29.6
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+..+.. |.+. ..+++--||-=--||+.
T Consensus 92 Id~Li~IGGdgs~~~a~~-L~e~---~~i~vigiPkTIDNDl~ 130 (301)
T TIGR02482 92 IEGLVVIGGDGSYTGAQK-LYEE---GGIPVIGLPGTIDNDIP 130 (301)
T ss_pred CCEEEEeCCchHHHHHHH-HHHh---hCCCEEeecccccCCCc
Confidence 357999999999976643 3331 35788889999999997
No 88
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=65.93 E-value=36 Score=33.69 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccC----cEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNEN----QVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~----~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GG 157 (333)
++++|+..+.+. .++.+...|... .+|+.. ..|. .+.+.+.++.++ ..+.+.||++||
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~-~~p~--~~~v~~~~~~~~---------~~~~D~IIaiGG 84 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVA-GEPS--VELVDAAVAEAR---------NAGCDVVIAIGG 84 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCC-CCcC--HHHHHHHHHHHH---------hcCCCEEEEecC
Confidence 678888776553 566666666542 234322 2332 122323322111 124577888888
Q ss_pred chHHHHHHHHHhhC------------------C-CCCCCCEEEEeC--CCCcchhh
Q 019940 158 DGTASWLLGVVSDL------------------K-LPHSPPVATVPL--GTGNNIPF 192 (333)
Q Consensus 158 DGTvneVln~l~~~------------------~-~~~~~plgiIP~--GTGNDfAR 192 (333)
|++..+...+.-. . ....+|+..||. |||.-..+
T Consensus 85 -GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 85 -GSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred -chHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 7777766554210 0 013578999995 56655444
No 89
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=63.88 E-value=7.5 Score=39.17 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=38.9
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCe
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKE 220 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~~ 220 (333)
.|.||..||||||--+..-..+ .-||+--+-+|| ||.=.- .+.++.++.+..|.+++.
T Consensus 169 ~D~iItLGGDGTvL~aS~LFq~----~VPPV~sFslGs-------lGFLtp---f~f~~f~~~l~~v~~~~~ 226 (409)
T KOG2178|consen 169 FDLIITLGGDGTVLYASSLFQR----SVPPVLSFSLGS-------LGFLTP---FPFANFQEQLARVLNGRA 226 (409)
T ss_pred eeEEEEecCCccEEEehhhhcC----CCCCeEEeecCC-------cccccc---ccHHHHHHHHHHHhcCcc
Confidence 4679999999999666544332 346776666665 443221 234688899999998874
No 90
>PLN02834 3-dehydroquinate synthase
Probab=61.80 E-value=31 Score=35.17 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccC----cEEEeec-c-ChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEE
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNEN----QVIDLGE-K-APDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIV 154 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~----~v~~l~~-~-~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv 154 (333)
.++++||..+... ....+.+.+.|... .+++... . .+..-++.+.+.++.+.+.+ ....+.||+
T Consensus 100 g~rvlIVtD~~v~----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~------~dr~~~VIA 169 (433)
T PLN02834 100 GKRVLVVTNETVA----PLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESR------LDRRCTFVA 169 (433)
T ss_pred CCEEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcC------CCcCcEEEE
Confidence 3778888876543 23566677777542 2332221 1 11111222333333222111 112346777
Q ss_pred EcCchHHHHHHHHHhhCCCCCCCCEEEEeCC
Q 019940 155 AGGDGTASWLLGVVSDLKLPHSPPVATVPLG 185 (333)
Q Consensus 155 ~GGDGTvneVln~l~~~~~~~~~plgiIP~G 185 (333)
+|| |++..+...+... ....+|+-.||.-
T Consensus 170 iGG-Gsv~D~ak~~A~~-y~rgiplI~VPTT 198 (433)
T PLN02834 170 LGG-GVIGDMCGFAAAS-YQRGVNFVQIPTT 198 (433)
T ss_pred ECC-hHHHHHHHHHHHH-hcCCCCEEEECCc
Confidence 776 8888888765321 1246889999983
No 91
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=61.50 E-value=23 Score=36.39 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=32.3
Q ss_pred cEEEEEcCchHHHHHHHHHhhC-CCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 019940 150 LRLIVAGGDGTASWLLGVVSDL-KLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~-~~~~~~plgiIP~GTGNDfA---R~LG~~~ 198 (333)
+.++++|||||+.-+..--... .....+++--||-==-||+. +++|...
T Consensus 174 ~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdT 226 (443)
T PRK06830 174 NILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFET 226 (443)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHH
Confidence 5699999999997664322110 01235788888988899986 4455443
No 92
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.42 E-value=49 Score=33.07 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=27.5
Q ss_pred cCcEEEEEcCchHHHHHHHHHhh---CC-----------------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSD---LK-----------------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~---~~-----------------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+.+.||++|| |++..+...+.- .. ....+|+..||. |||-...+.
T Consensus 78 ~~D~IIaiGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~ 150 (398)
T cd08178 78 KPDTIIALGG-GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPF 150 (398)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCe
Confidence 4578999998 566665554421 00 013578999996 777655333
No 93
>PLN02564 6-phosphofructokinase
Probab=60.93 E-value=24 Score=36.73 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=28.3
Q ss_pred cEEEEEcCchHHHHHHH---HHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln---~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
+.++++|||||+.-+.. .+.+. ..++++--||-==-||+.
T Consensus 178 d~LivIGGDGS~~gA~~L~e~~~~~--g~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 178 NQVYIIGGDGTQKGASVIYEEIRRR--GLKVAVAGIPKTIDNDIP 220 (484)
T ss_pred CEEEEECCchHHHHHHHHHHHHHHc--CCCceEEEecccccCCCc
Confidence 57999999999976543 22222 234557888988889987
No 94
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.35 E-value=72 Score=31.94 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=25.1
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLG 185 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~G 185 (333)
.+.||++|| |++..+...+... ....+|+-.||.=
T Consensus 100 ~~~IIalGG-G~v~D~ag~vA~~-~~rGip~I~IPTT 134 (369)
T cd08198 100 HSYVIAIGG-GAVLDAVGYAAAT-AHRGVRLIRIPTT 134 (369)
T ss_pred CcEEEEECC-hHHHHHHHHHHHH-hcCCCCEEEECCC
Confidence 356888887 9999998877542 2356888888854
No 95
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=58.71 E-value=38 Score=33.16 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=30.2
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+. .|.+ ..+++--||-==-||+.
T Consensus 93 Id~Li~IGGdgs~~~a~-~L~e----~~i~vigiPkTIDNDi~ 130 (317)
T cd00763 93 IDALVVIGGDGSYMGAM-RLTE----HGFPCVGLPGTIDNDIP 130 (317)
T ss_pred CCEEEEECCchHHHHHH-HHHH----cCCCEEEecccccCCCC
Confidence 35799999999997764 3444 25889999999999987
No 96
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=58.62 E-value=69 Score=32.17 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCc----EEEee-------ccChh-hHHHHHHHHHHHhhhccchhhhhhcc
Q 019940 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLG-------EKAPD-KVLHQLYVTLEKFKAAGDVFASEIEK 148 (333)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~----v~~l~-------~~~p~-~~~~~~~~~l~~l~~~g~~la~~~~~ 148 (333)
.++++||..+.--. ....+++.+.+.|.... +++.. ...+. +....+.+.+.+ .+ ...
T Consensus 42 ~~r~liVtD~~v~~-~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~---~~------~dr 111 (389)
T PRK06203 42 PKKVLVVIDSGVLR-AHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR---HG------IDR 111 (389)
T ss_pred CCeEEEEECchHHH-hhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH---cC------CCC
Confidence 46788888755432 11235677777775322 12211 11222 223333333321 11 123
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
.+.||++|| |++..+...+... ....+|+-.||.
T Consensus 112 ~d~IIaiGG-Gsv~D~ak~iA~~-~~rgip~I~IPT 145 (389)
T PRK06203 112 HSYVLAIGG-GAVLDMVGYAAAT-AHRGVRLIRIPT 145 (389)
T ss_pred CceEEEeCC-cHHHHHHHHHHHH-hcCCCCEEEEcC
Confidence 356888877 8888887766432 124678999995
No 97
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=57.88 E-value=2.2 Score=37.59 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=11.0
Q ss_pred EEcCchHHHHHHH
Q 019940 154 VAGGDGTASWLLG 166 (333)
Q Consensus 154 v~GGDGTvneVln 166 (333)
-.|||||+||+-+
T Consensus 130 gdGGDGT~hW~Yd 142 (180)
T PLN00180 130 GDGGDGTGHWVYE 142 (180)
T ss_pred ccCCCCceeeEee
Confidence 4699999999864
No 98
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=57.86 E-value=40 Score=32.86 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=25.3
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCC
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLG 185 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~G 185 (333)
+.+.||++|| |++..+...+.-. ..+|+-.||.=
T Consensus 80 ~~d~IIaiGG-Gsv~D~aK~iA~~---~gip~I~VPTT 113 (332)
T cd08549 80 DTEFLLGIGS-GTIIDLVKFVSFK---VGKPFISVPTA 113 (332)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHH---cCCCEEEeCCC
Confidence 3467888888 8888888777532 46889999963
No 99
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=57.77 E-value=25 Score=34.54 Aligned_cols=98 Identities=21% Similarity=0.141 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhcc--Cc--EEEeeccCh-hhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNE--NQ--VIDLGEKAP-DKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~--~~--v~~l~~~~p-~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GG 157 (333)
+++||..+ +- ....+++.+...|.+ .. +|+-....| .+. +.+.++.++ ..+.+.||++||
T Consensus 23 r~lvVt~~-~~--~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~---v~~~~~~~~---------~~~~D~IIaiGG 87 (366)
T PF00465_consen 23 RVLVVTDP-SL--SKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLED---VDEAAEQAR---------KFGADCIIAIGG 87 (366)
T ss_dssp EEEEEEEH-HH--HHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHH---HHHHHHHHH---------HTTSSEEEEEES
T ss_pred CEEEEECc-hH--HhCccHHHHHHHHhhCceEEEEEecCCCCCcHHH---HHHHHHHHH---------hcCCCEEEEcCC
Confidence 88899887 32 223367788877743 22 333222222 232 333332221 124578999988
Q ss_pred chHHHHHHHHHh---hCC-------------CCCCCCEEEEeC--CCCcchhhhcCC
Q 019940 158 DGTASWLLGVVS---DLK-------------LPHSPPVATVPL--GTGNNIPFSFGW 196 (333)
Q Consensus 158 DGTvneVln~l~---~~~-------------~~~~~plgiIP~--GTGNDfAR~LG~ 196 (333)
|++..+...+. ... ....+|+..||. |||-.+.+...+
T Consensus 88 -GS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi 143 (366)
T PF00465_consen 88 -GSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVI 143 (366)
T ss_dssp -HHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEE
T ss_pred -CCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccc
Confidence 55555554442 211 012379999997 666566555444
No 100
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=56.86 E-value=76 Score=31.34 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 019940 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (333)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~~IVv~GGDGTv 161 (333)
+++++|..+.-. ....+.+++.|....++.+....+..-++.+.+.++.+.+.+ ....+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~------~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDAAPVIAIDATEENKSLEAVSSVIESLRQNG------ARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCcEEEEECC-hHH
Confidence 678888876442 225666777665433332222112212222223333222111 122356777766 888
Q ss_pred HHHHHHHhhCCCCCCCCEEEEe
Q 019940 162 SWLLGVVSDLKLPHSPPVATVP 183 (333)
Q Consensus 162 neVln~l~~~~~~~~~plgiIP 183 (333)
..+...+... ....+++-.||
T Consensus 89 ~D~ak~vA~~-~~rgi~~i~iP 109 (346)
T cd08196 89 QDVTTFVASI-YMRGVSWSFVP 109 (346)
T ss_pred HHHHHHHHHH-HHcCCCeEEec
Confidence 8887766421 01234555555
No 101
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=55.41 E-value=46 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=25.6
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCC
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLG 185 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~G 185 (333)
+.+.||++|| |++..+...+.-. ..+|+-.||.=
T Consensus 80 ~~d~IIaIGG-Gs~~D~aK~vA~~---~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGS-GTINDITKYVSYK---TGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHh---cCCCEEEecCc
Confidence 4577898988 7888888777542 46789999963
No 102
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=55.12 E-value=1e+02 Score=30.48 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=27.0
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhC---C------------CCCCCCEEEEeC--CCCcchhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDL---K------------LPHSPPVATVPL--GTGNNIPF 192 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~---~------------~~~~~plgiIP~--GTGNDfAR 192 (333)
+.+.||++|| |++..+...+.-. . ....+|+-.||. |||-....
T Consensus 83 ~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 83 GADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 4577888888 7777776554321 0 013578999996 56544433
No 103
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=54.52 E-value=75 Score=31.72 Aligned_cols=88 Identities=24% Similarity=0.290 Sum_probs=54.7
Q ss_pred cccccCeeeecCCc-ccc-ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCcEEEeeccChhhHHHHHHHHHHHhh
Q 019940 59 NYYIPNYILVSGSE-VQR-SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFK 136 (333)
Q Consensus 59 ~~~ip~~~~~~~~~-~~~-~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~v~~l~~~~p~~~~~~~~~~l~~l~ 136 (333)
+|..|..++.-..+ ..+ .......++++.|---| -+..-+.+++...|...+++++....|-..++.+.+.++-.+
T Consensus 5 ~y~nPTki~FGkg~i~~l~~ei~~~~kVLi~YGGGS--IKrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~k 82 (384)
T COG1979 5 TYHNPTKILFGKGQIAELREEIPKDAKVLIVYGGGS--IKKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICK 82 (384)
T ss_pred cccCCceEEecCchHHHHHhhccccCeEEEEecCcc--ccccchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46779998887643 111 12222377888885222 234457889999999888888877556555555666654221
Q ss_pred hccchhhhhhccCcEEEEEcC
Q 019940 137 AAGDVFASEIEKRLRLIVAGG 157 (333)
Q Consensus 137 ~~g~~la~~~~~~~~IVv~GG 157 (333)
+ ++-+.|+++||
T Consensus 83 --------e-e~idflLAVGG 94 (384)
T COG1979 83 --------E-ENIDFLLAVGG 94 (384)
T ss_pred --------H-cCceEEEEecC
Confidence 1 22356888888
No 104
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=54.10 E-value=95 Score=34.46 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=45.4
Q ss_pred ccccccCeeeecCCc-cccc-cCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhc--cCc--EEEeeccChhhHHHHHHHH
Q 019940 58 NNYYIPNYILVSGSE-VQRS-SLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLN--ENQ--VIDLGEKAPDKVLHQLYVT 131 (333)
Q Consensus 58 ~~~~ip~~~~~~~~~-~~~~-~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~--~~~--v~~l~~~~p~~~~~~~~~~ 131 (333)
+-|..|..++..... ..+. .....++++||..+..- ...+++.+++.|. ... +..+....|..-.+.+.+.
T Consensus 455 ~~~~~P~~i~~G~g~l~~l~~~l~~~~~~lvVtd~~~~---~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~ 531 (862)
T PRK13805 455 QWFKVPKKIYFERGSLPYLLDELDGKKRAFIVTDRFMV---ELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKG 531 (862)
T ss_pred eeeecCCeEEECCCHHHHHHHHhcCCCEEEEEECcchh---hcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHH
Confidence 346667777655421 1111 11134678888764432 1225666777775 322 2222221111111212222
Q ss_pred HHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHH
Q 019940 132 LEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVV 168 (333)
Q Consensus 132 l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l 168 (333)
++.++ + .+.+.||++|| |++..+...+
T Consensus 532 ~~~~~--------~-~~~D~IIaiGG-GSviD~AK~i 558 (862)
T PRK13805 532 AELMR--------S-FKPDTIIALGG-GSPMDAAKIM 558 (862)
T ss_pred HHHHH--------h-cCCCEEEEeCC-chHHHHHHHH
Confidence 22211 1 23577888887 6666666554
No 105
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=54.01 E-value=45 Score=32.84 Aligned_cols=43 Identities=23% Similarity=0.192 Sum_probs=29.7
Q ss_pred CcEEEEEcCchHHHHHHHHHhhC-CCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDL-KLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~-~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+..-.... +....+++--||-=--||+.
T Consensus 93 I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 93 IDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCc
Confidence 35799999999997664321110 11246889999977789987
No 106
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=53.26 E-value=86 Score=31.15 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=28.8
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhC---C------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDL---K------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~---~------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+.+.||++|| |++..+...+.-. . ....+|+..||. |||-...+.
T Consensus 79 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 79 GPDVIIGLGG-GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 4577888888 7777777655310 0 112578999995 676655554
No 107
>PRK03202 6-phosphofructokinase; Provisional
Probab=52.63 E-value=51 Score=32.35 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=30.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+.. |.+ ..+++--||-==-||+.
T Consensus 94 Id~Li~IGGd~s~~~a~~-L~e----~~i~vigiPkTIDNDl~ 131 (320)
T PRK03202 94 IDALVVIGGDGSYMGAKR-LTE----HGIPVIGLPGTIDNDIA 131 (320)
T ss_pred CCEEEEeCChHHHHHHHH-HHh----cCCcEEEecccccCCCC
Confidence 357999999999987643 444 36788889988899987
No 108
>PRK14072 6-phosphofructokinase; Provisional
Probab=51.94 E-value=48 Score=33.71 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=29.4
Q ss_pred CcEEEEEcCchHHHHHHHHHhhC--CCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~--~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+.. |.+. .....+++--||-==-||+.
T Consensus 104 Id~LivIGGdgS~~~a~~-L~e~~~~~g~~i~vIgIPkTIDNDl~ 147 (416)
T PRK14072 104 IGYFFYNGGNDSMDTALK-VSQLAKKMGYPIRCIGIPKTIDNDLP 147 (416)
T ss_pred CCEEEEECChHHHHHHHH-HHHHHHHhCCCceEEEeeecccCCCC
Confidence 357999999999976643 2220 01234888889987799997
No 109
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.61 E-value=35 Score=29.51 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=38.6
Q ss_pred EEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc
Q 019940 151 RLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 217 (333)
Q Consensus 151 ~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~ 217 (333)
.-+.++|+- ..+++..+.. -...++-+-+|=+|| ||+.+.... ..-.+++.++++.+..
T Consensus 44 ~n~g~~G~t-~~~~~~~l~~-~~~~~pd~Vii~~G~-ND~~~~~~~-----~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKTGAT-SADLLRQLAP-LPETRFDVAVISIGV-NDVTHLTSI-----ARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecCCcC-HHHHHHHHHh-cccCCCCEEEEEecc-cCcCCCCCH-----HHHHHHHHHHHHHHHh
Confidence 466788884 4566666654 123567789999998 998753221 1234678888888876
No 110
>PRK14071 6-phosphofructokinase; Provisional
Probab=50.27 E-value=64 Score=32.13 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.- +..|.+. ..+++--||-==-||+.
T Consensus 108 Id~Li~IGGdgS~~~-a~~L~~~---~~i~vIgiPkTIDNDl~ 146 (360)
T PRK14071 108 LDALIGIGGDGSLAI-LRRLAQQ---GGINLVGIPKTIDNDVG 146 (360)
T ss_pred CCEEEEECChhHHHH-HHHHHHh---cCCcEEEecccccCCCc
Confidence 357999999999864 3445431 26888889988899986
No 111
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=50.03 E-value=97 Score=30.46 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=26.4
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhC---C----------------CCCCCCEEEEeC--CCCcch
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNI 190 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~---~----------------~~~~~plgiIP~--GTGNDf 190 (333)
+.+.||++|| |++..+...+.-. . ....+|+..||. |||--.
T Consensus 77 ~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 77 GPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred CcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 3467888887 7777776655321 0 124578999997 565544
No 112
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=49.65 E-value=22 Score=30.31 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=33.9
Q ss_pred EEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcC
Q 019940 152 LIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (333)
Q Consensus 152 IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~ 218 (333)
-..++||.| .+++..+...-...++.+.+|=+|| ||+.+... . ..-.+.+.++++.+...
T Consensus 27 N~Gi~G~~~-~~~~~~~~~~~~~~~p~~vvi~~G~-ND~~~~~~--~---~~~~~~~~~lv~~i~~~ 86 (171)
T cd04502 27 NRGFGGSTL-ADCLHYFDRLVLPYQPRRVVLYAGD-NDLASGRT--P---EEVLRDFRELVNRIRAK 86 (171)
T ss_pred ecCcccchH-HHHHHHHHhhhccCCCCEEEEEEec-CcccCCCC--H---HHHHHHHHHHHHHHHHH
Confidence 346677744 4454444332122467788888888 88754322 1 12345677777777643
No 113
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=49.10 E-value=8.8 Score=33.21 Aligned_cols=13 Identities=69% Similarity=1.124 Sum_probs=10.7
Q ss_pred cEEEEEcCchHHH
Q 019940 150 LRLIVAGGDGTAS 162 (333)
Q Consensus 150 ~~IVv~GGDGTvn 162 (333)
-|||+||||||-.
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 4899999999864
No 114
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=47.24 E-value=25 Score=33.23 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=23.6
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcc
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNN 189 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGND 189 (333)
.+.||++|| ||++.+...+... ...|+-.+|.=--||
T Consensus 76 ~d~ii~vGg-G~i~D~~K~~A~~---~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 76 ADLIIGVGG-GTIIDIAKYAAFE---LGIPFISVPTAASHD 112 (250)
T ss_dssp --EEEEEES-HHHHHHHHHHHHH---HT--EEEEES--SSG
T ss_pred CCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEeccccccc
Confidence 356777776 9999999877642 467888888766665
No 115
>PRK10586 putative oxidoreductase; Provisional
Probab=47.15 E-value=1e+02 Score=30.61 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcc
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNN 189 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGND 189 (333)
.+.||++|| |++..+...+... ..+|+..||.=-++|
T Consensus 87 ~d~iiavGG-Gs~iD~aK~~a~~---~~~p~i~vPT~a~t~ 123 (362)
T PRK10586 87 RQVVIGVGG-GALLDTAKALARR---LGLPFVAIPTIAATC 123 (362)
T ss_pred CCEEEEecC-cHHHHHHHHHHhh---cCCCEEEEeCCcccc
Confidence 467888877 7777887777542 468999999744443
No 116
>PLN02884 6-phosphofructokinase
Probab=47.09 E-value=55 Score=33.33 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=29.1
Q ss_pred CcEEEEEcCchHHHHHHHH---HhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~---l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+..- +.+. ...+++--||-==-||+.
T Consensus 144 Id~LivIGGdgS~~~a~~L~~~~~~~--g~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 144 INMLFVLGGNGTHAGANAIHNECRKR--KMKVSVVGVPKTIDNDIL 187 (411)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHHc--CCCceEEeccccccCCCc
Confidence 3579999999999765432 1111 134788889988899986
No 117
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=44.84 E-value=1.3e+02 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=27.3
Q ss_pred cCcEEEEEcCchHHHHHHHHHhh---CC-------------CCCCCCEEEEeC--CCCcchhhh
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSD---LK-------------LPHSPPVATVPL--GTGNNIPFS 193 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~---~~-------------~~~~~plgiIP~--GTGNDfAR~ 193 (333)
+.+.||++|| |++..+...+.- .. ....+|+..||. |||-...+.
T Consensus 83 ~~d~IIaiGG-GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 83 GCDAILAVGG-GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 4567888888 666666654421 10 012378999996 677655444
No 118
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=44.81 E-value=1.2e+02 Score=30.50 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred CCCCCChhhHHHHHHHHhccCc-EEEeeccChhhHHHHHHHHHHHhhhc--------------c-chhhhhh-ccCcEEE
Q 019940 91 KSGGQLGGKLLLTYRSLLNENQ-VIDLGEKAPDKVLHQLYVTLEKFKAA--------------G-DVFASEI-EKRLRLI 153 (333)
Q Consensus 91 ~SG~~~g~~~~~~l~~~L~~~~-v~~l~~~~p~~~~~~~~~~l~~l~~~--------------g-~~la~~~-~~~~~IV 153 (333)
.+|+--+.-++.-+..+|.... +..+....+.... .+.+.+.++..+ + +.+.+.. ...+.||
T Consensus 95 ~agNvp~~~~~S~~~~lL~gn~nivK~ss~d~~~~~-~l~~~l~~~~~~~~l~~~i~v~~~~~~d~~~~~~~~~~~D~vv 173 (399)
T PF05893_consen 95 AAGNVPLVGFYSLVRGLLSGNANIVKLSSRDPFLAP-ALLRSLAEIDPEHPLADSIAVVYWPGGDEELEEALSQQADAVV 173 (399)
T ss_pred cCCCccchHHHHHHHHHHhCCceEEECCCCchhHHH-HHHHHHHhhCccchhhhcEEEEEecCCchHHHHHHHHHCCEEE
Confidence 6777777778888888886543 4666554444332 244444433221 1 1122222 3567899
Q ss_pred EEcCchHHHHHHHHHhhC-C---CCCCCCEEEEeCCC
Q 019940 154 VAGGDGTASWLLGVVSDL-K---LPHSPPVATVPLGT 186 (333)
Q Consensus 154 v~GGDGTvneVln~l~~~-~---~~~~~plgiIP~GT 186 (333)
|.|||-||..+-.-+... . ..++..+++|-.-.
T Consensus 174 ~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~~ 210 (399)
T PF05893_consen 174 AWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAEA 210 (399)
T ss_pred EeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCch
Confidence 999999999998744211 1 23566677776553
No 119
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=44.58 E-value=59 Score=33.02 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=29.5
Q ss_pred CcEEEEEcCchHHHHHHHH---HhhCCCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~---l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||..-+..- +.+. ...+++--||-==-||+.
T Consensus 113 Id~Li~IGGdgS~~~a~~L~~~~~~~--g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 113 VDILHTIGGDDTNTTAADLAAYLAEN--GYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred CCEEEEECChhHHHHHHHHHHHHHHh--CCCceEEEeeeeeeCCCC
Confidence 3579999999999766432 2211 136889999998899985
No 120
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=42.22 E-value=39 Score=32.47 Aligned_cols=39 Identities=36% Similarity=0.456 Sum_probs=29.6
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhh
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPF 192 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR 192 (333)
+.+|++|||||+..+ ..|.+. ..+++-.||-=--||+.-
T Consensus 94 d~Li~IGG~gs~~~a-~~L~~~---~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 94 DALIVIGGDGSMKGA-HKLSEE---FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp SEEEEEESHHHHHHH-HHHHHH---HHSEEEEEEEETTSSCTT
T ss_pred CEEEEecCCCHHHHH-HHHHhc---CceEEEEEeccccCCcCC
Confidence 579999999998776 344421 237899999988899874
No 121
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=41.59 E-value=1.1e+02 Score=30.75 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=40.8
Q ss_pred cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCc
Q 019940 75 RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRL 150 (333)
Q Consensus 75 ~~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~--v--~~l~~~~p~~~~~~~~~~l~~l~~~g~~la~~~~~~~ 150 (333)
........+++||.|+.=.. -..+++...|.... + +.+-......-++.+.+....+.+. ......
T Consensus 27 l~~~~~~~k~~ivtd~~v~~----~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~------~~~R~s 96 (360)
T COG0337 27 LAELLAGRKVAIVTDETVAP----LYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEA------GLDRKS 96 (360)
T ss_pred hhhhccCCeEEEEECchhHH----HHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHc------CCCCCc
Confidence 34445556899999975432 23555555555422 2 2221111111122222222222211 123345
Q ss_pred EEEEEcCchHHHHHHHHHh
Q 019940 151 RLIVAGGDGTASWLLGVVS 169 (333)
Q Consensus 151 ~IVv~GGDGTvneVln~l~ 169 (333)
.||+.|| |+|..+..-+.
T Consensus 97 ~iialGG-GvigDlaGF~A 114 (360)
T COG0337 97 TLIALGG-GVIGDLAGFAA 114 (360)
T ss_pred EEEEECC-hHHHHHHHHHH
Confidence 6788877 89998876554
No 122
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=40.66 E-value=1.7e+02 Score=30.79 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
..+.||++|| |++..+...+... ....+|+-.||.
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~-y~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAAT-WMRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHH-HHcCCCEEEeCC
Confidence 3466777777 8999998877531 114688888887
No 123
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=40.03 E-value=1.7e+02 Score=26.22 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=36.4
Q ss_pred CcEEEEEcCchHHH-----HHHHHHhhCCCCCCCCEE-EE---------eCCCCcchhhhcCCCCCC--CCCchHHHHHH
Q 019940 149 RLRLIVAGGDGTAS-----WLLGVVSDLKLPHSPPVA-TV---------PLGTGNNIPFSFGWGKKN--PNTDQQAVLSF 211 (333)
Q Consensus 149 ~~~IVv~GGDGTvn-----eVln~l~~~~~~~~~plg-iI---------P~GTGNDfAR~LG~~~~~--~~~~~~~~~~~ 211 (333)
..+|+++=|||+++ |.++..... ..++- |+ |.+...+.++.+||.... .+.+.+.+.++
T Consensus 97 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~----~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a 172 (195)
T cd02007 97 KRKVIAVIGDGALTGGMAFEALNNAGYL----KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKV 172 (195)
T ss_pred CCeEEEEEcccccccChHHHHHHHHHHh----CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccceECCCCHHHHHHH
Confidence 45799999999997 444433332 12221 22 233456677889997642 34455555555
Q ss_pred HHHHH
Q 019940 212 LEQVK 216 (333)
Q Consensus 212 l~~I~ 216 (333)
++...
T Consensus 173 ~~~a~ 177 (195)
T cd02007 173 LKEVK 177 (195)
T ss_pred HHHHH
Confidence 55443
No 124
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=38.46 E-value=79 Score=33.37 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=28.9
Q ss_pred cEEEEEcCchHHHHHHHH---HhhCCCCCCCCEEEEeCCCCcchhh
Q 019940 150 LRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIPF 192 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~---l~~~~~~~~~plgiIP~GTGNDfAR 192 (333)
+.+|++|||||+..+..- +.+. ..++++--||-==-||+..
T Consensus 163 d~LviIGGdgS~~~A~~Lae~~~~~--g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 163 DGLVIIGGDDSNTNAALLAEYFAKH--GLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhc--CCCceEEEEeeeecCCCCC
Confidence 569999999998765421 2211 2357788888877899975
No 125
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=38.14 E-value=91 Score=33.03 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=29.1
Q ss_pred cEEEEEcCchHHHHHHHHHhhC--CCCCCCCEEEEeCCCCcchh
Q 019940 150 LRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~--~~~~~~plgiIP~GTGNDfA 191 (333)
+.+|++|||||...+.. |.+. +....+++--||-==-||+.
T Consensus 166 d~LviIGGd~S~~~A~~-Lae~~~~~~~~i~VIGIPkTIDNDl~ 208 (555)
T PRK07085 166 DGLVIIGGDDSNTNAAI-LAEYFAKHGCKTQVIGVPKTIDGDLK 208 (555)
T ss_pred CEEEEeCCchHHHHHHH-HHHHHHHhCCCccEEEEeeeecCCCC
Confidence 56999999999976643 2220 01246788888988889996
No 126
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=37.71 E-value=88 Score=33.56 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=28.6
Q ss_pred cEEEEEcCchHHHHHHH---HHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln---~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
+.+|++|||||...+.. .+.+. ...+++--||-==-||+.
T Consensus 175 d~LvvIGGddS~~~A~~Lae~~~~~--~~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 175 DGLVIIGGVTSNTDAAQLAETFAEA--KCKTKVVGVPVTLNGDLK 217 (610)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHc--CCCceEEEeceeeeCCCC
Confidence 56999999999876632 22221 236778888887789997
No 127
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.14 E-value=41 Score=28.99 Aligned_cols=58 Identities=5% Similarity=0.023 Sum_probs=37.2
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCC
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAK 219 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~ 219 (333)
..=..+|||+++...+..+.. ..++.+-+|=+|| ||+.... ...+++..+++.|.+..
T Consensus 34 v~N~g~~G~~~~~~~~~~~~~---~~~pd~vii~~G~-ND~~~~~--------~~~~~~~~~i~~i~~~~ 91 (177)
T cd01844 34 VINLGFSGNARLEPEVAELLR---DVPADLYIIDCGP-NIVGAEA--------MVRERLGPLVKGLRETH 91 (177)
T ss_pred eEEeeecccccchHHHHHHHH---hcCCCEEEEEecc-CCCccHH--------HHHHHHHHHHHHHHHHC
Confidence 345688999887654433332 2367788888887 8864321 23457888888887643
No 128
>PRK06756 flavodoxin; Provisional
Probab=34.88 E-value=2.1e+02 Score=23.99 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 019940 83 PVLVFINSKSGGQLGGKLLLTYRSLLNE 110 (333)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~l~~~L~~ 110 (333)
+++|||= |..|..+++.+.+.+.|..
T Consensus 3 kv~IiY~--S~tGnTe~vA~~ia~~l~~ 28 (148)
T PRK06756 3 KLVMIFA--SMSGNTEEMADHIAGVIRE 28 (148)
T ss_pred eEEEEEE--CCCchHHHHHHHHHHHHhh
Confidence 5778884 5566777888888877754
No 129
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=34.47 E-value=67 Score=27.38 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=32.3
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAK 219 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~~ 219 (333)
...++.++|.| +-+-+|=+|| ||+.+..+.+. ....+.+.++++.+.+..
T Consensus 45 ~~~~~~~~g~~-----------------pd~vii~~G~-ND~~~~~~~~~---~~~~~~~~~li~~i~~~~ 94 (169)
T cd01831 45 EYSIIAYSGIG-----------------PDLVVINLGT-NDFSTGNNPPG---EDFTNAYVEFIEELRKRY 94 (169)
T ss_pred cEEEEEecCCC-----------------CCEEEEECCc-CCCCCCCCCCH---HHHHHHHHHHHHHHHHHC
Confidence 35688999998 4588899998 99854332111 123346777777776543
No 130
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=34.15 E-value=1.2e+02 Score=33.27 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=29.8
Q ss_pred cEEEEEcCchHHHHHHHHHhh-CCC-CCCCCEEEEeCCCCcchh
Q 019940 150 LRLIVAGGDGTASWLLGVVSD-LKL-PHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~-~~~-~~~~plgiIP~GTGNDfA 191 (333)
+.+|++|||||..-+..-... ... ...+++-.||.==-||+.
T Consensus 480 d~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 480 DGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCC
Confidence 579999999999765432211 001 136889999999999997
No 131
>PTZ00287 6-phosphofructokinase; Provisional
Probab=33.72 E-value=88 Score=36.72 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=30.4
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCC--EEEEeCCCCcchhh-----hcCCCC
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPP--VATVPLGTGNNIPF-----SFGWGK 198 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~p--lgiIP~GTGNDfAR-----~LG~~~ 198 (333)
+.+||+|||||+..+.- |.+.-....++ +--||-==-||+.. ++|...
T Consensus 930 D~LVvIGGDgS~t~A~~-LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDT 984 (1419)
T PTZ00287 930 NGLVMPGSNVTITEAAL-LAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDS 984 (1419)
T ss_pred CEEEEECCchHHHHHHH-HHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHH
Confidence 57999999999976532 22200012344 66778777899976 555544
No 132
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=33.39 E-value=1.4e+02 Score=32.99 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=30.6
Q ss_pred CcEEEEEcCchHHHHHHHHHhhC--CC-CCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDL--KL-PHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~--~~-~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||..-+.. |.+. .. ...+|+-.||.==-||+.
T Consensus 479 Id~LivIGGdgs~~~a~~-L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 479 IDGLIIVGGFEAYKGLLQ-LREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred CCEEEEECChhHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 357999999999986653 3221 11 246899999999999986
No 133
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=33.34 E-value=4.4e+02 Score=25.95 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=27.8
Q ss_pred cCcEEEEEcCchHHHHHHHHHh---hCC------------CCCCCCEEEEeC--CCCcchhhhc
Q 019940 148 KRLRLIVAGGDGTASWLLGVVS---DLK------------LPHSPPVATVPL--GTGNNIPFSF 194 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~---~~~------------~~~~~plgiIP~--GTGNDfAR~L 194 (333)
+.+.||++|| |++-.+...+. ... ....+|+..||. |||--..+.-
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 4578888988 56656554442 110 013468999995 8877655443
No 134
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=32.53 E-value=1.8e+02 Score=29.24 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=67.2
Q ss_pred cccccCeeeecCCc-ccc---ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCc----EEEeeccChhhHHHHHHH
Q 019940 59 NYYIPNYILVSGSE-VQR---SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLGEKAPDKVLHQLYV 130 (333)
Q Consensus 59 ~~~ip~~~~~~~~~-~~~---~~~~~~~~vlvIvNP~SG~~~g~~~~~~l~~~L~~~~----v~~l~~~~p~~~~~~~~~ 130 (333)
.|.+|+.++.-... ..+ ......++.+|+.-|. -....+++.+.+.|+... ||+-....|. .+.+.+
T Consensus 3 ~~~~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~---~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~--~~~v~~ 77 (377)
T COG1454 3 WFYLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRG---LAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPT--IETVEA 77 (377)
T ss_pred ccccCceEEecCChHHHHHHHHHhcCCCceEEEECCc---cccchhHHHHHHHHHhcCCeEEEecCCCCCCC--HHHHHH
Confidence 46678887765432 111 1122337788887764 233346777777777655 3332222332 222333
Q ss_pred HHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHh---hCC------------CCCCCCEEEEe--CCCCcchhhh
Q 019940 131 TLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK------------LPHSPPVATVP--LGTGNNIPFS 193 (333)
Q Consensus 131 ~l~~l~~~g~~la~~~~~~~~IVv~GGDGTvneVln~l~---~~~------------~~~~~plgiIP--~GTGNDfAR~ 193 (333)
.++.+. ..+++.||++|| |++..+...+. ... ...++|+--|| .|||..-.+.
T Consensus 78 ~~~~~~---------~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~ 147 (377)
T COG1454 78 GAEVAR---------EFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPF 147 (377)
T ss_pred HHHHHH---------hcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCe
Confidence 333221 135678999998 66666665542 110 11237788888 4777777666
Q ss_pred cCCC
Q 019940 194 FGWG 197 (333)
Q Consensus 194 LG~~ 197 (333)
--+.
T Consensus 148 aVit 151 (377)
T COG1454 148 AVIT 151 (377)
T ss_pred EEEE
Confidence 5554
No 135
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=32.17 E-value=1.6e+02 Score=32.42 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=28.3
Q ss_pred CcEEEEEcCchHHHHHH----------HHHhhC--------CCCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLL----------GVVSDL--------KLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVl----------n~l~~~--------~~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+. ..+.+. +....+++--||-==-||+.
T Consensus 95 Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 95 IDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred CCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 35799999999987653 122210 01236788889955589987
No 136
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.22 E-value=2.9e+02 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.044 Sum_probs=22.2
Q ss_pred hccCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 146 IEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 146 ~~~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
....+.+|..|| +|+.|++. ..+|.-++|.
T Consensus 239 m~~aDl~Is~~G-~T~~E~~a--------~g~P~i~i~~ 268 (279)
T TIGR03590 239 MNEADLAIGAAG-STSWERCC--------LGLPSLAICL 268 (279)
T ss_pred HHHCCEEEECCc-hHHHHHHH--------cCCCEEEEEe
Confidence 345678888999 99999863 2567777776
No 137
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=30.34 E-value=52 Score=27.96 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=36.9
Q ss_pred EEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc
Q 019940 151 RLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 217 (333)
Q Consensus 151 ~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~ 217 (333)
....++||.|- +++..+...-...++.+.+|=+|| ||+.+.. + +....++++++++.+.+
T Consensus 27 ~n~g~~G~t~~-~~~~~~~~~~~~~~pd~v~i~~G~-ND~~~~~--~---~~~~~~~~~~l~~~~~~ 86 (174)
T cd01841 27 NNLGIAGISSR-QYLEHIEPQLIQKNPSKVFLFLGT-NDIGKEV--S---SNQFIKWYRDIIEQIRE 86 (174)
T ss_pred EecccccccHH-HHHHHHHHHHHhcCCCEEEEEecc-ccCCCCC--C---HHHHHHHHHHHHHHHHH
Confidence 46678899664 455555221122467788999998 8986532 1 12234567778877765
No 138
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=30.20 E-value=86 Score=29.63 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=26.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 187 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTG 187 (333)
...||++|=||++-.|+.+|.+ +|+--+|.-+|
T Consensus 174 ~~lIVvAGMEGaLPsvvagLvD------~PVIavPTsVG 206 (254)
T COG1691 174 DVLIVVAGMEGALPSVVAGLVD------VPVIAVPTSVG 206 (254)
T ss_pred CeEEEEcccccchHHHHHhccC------CCeEecccccc
Confidence 3469999999999999999975 56666676554
No 139
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=29.00 E-value=1.4e+02 Score=31.65 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=29.4
Q ss_pred cEEEEEcCchHHHHHHH---HHhhCCCCCCCCEEEEeCCCCcchhhh
Q 019940 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIPFS 193 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln---~l~~~~~~~~~plgiIP~GTGNDfAR~ 193 (333)
+.+|++|||||...+.. .+.+. ..++++--||-==-||+.-.
T Consensus 168 d~LviIGGddS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 168 DALVVIGGDDSNTNAALLAENFRSK--GLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhc--CCCceEEEEeeeecCCCCCC
Confidence 46999999999875542 22221 23577888898889999863
No 140
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=27.90 E-value=1.7e+02 Score=25.91 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=40.0
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCC-EEEE------------eCCC--Ccc---hhhhcCCCCCCCCCchHHHHHH
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPP-VATV------------PLGT--GNN---IPFSFGWGKKNPNTDQQAVLSF 211 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~p-lgiI------------P~GT--GND---fAR~LG~~~~~~~~~~~~~~~~ 211 (333)
..||++-|||+...-++.|.-.......| +-|| +..+ .-| +|+++|+.....-.+.++++++
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~a 139 (181)
T TIGR03846 60 RTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDA 139 (181)
T ss_pred CcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHHH
Confidence 46899999999986666554211011112 2222 1112 113 6788898653212335677777
Q ss_pred HHHHHcCCeEeEEE
Q 019940 212 LEQVKNAKEMQIDS 225 (333)
Q Consensus 212 l~~I~~~~~~~iD~ 225 (333)
|+.+....+.-||+
T Consensus 140 l~a~~~~~p~li~v 153 (181)
T TIGR03846 140 LKALAMKGPTFIHV 153 (181)
T ss_pred HHHHcCCCCEEEEE
Confidence 87444444555554
No 141
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=27.32 E-value=2.4e+02 Score=28.14 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=26.6
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchh
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfA 191 (333)
+.+|++|||||..-..- |.+. ..+++-=||-==-||++
T Consensus 96 d~LvvIGGDgS~~gA~~-Lae~---~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 96 DALVVIGGDGSYTGAAL-LAEE---GGIPVVGVPKTIDNDIS 133 (347)
T ss_pred CEEEEECCCChHHHHHH-HHHh---cCCcEEecCCCccCCCc
Confidence 57999999999876543 2221 23666667777788887
No 142
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.25 E-value=3e+02 Score=24.33 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=22.3
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCC
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 187 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTG 187 (333)
..|.++|+.+-+--|+.++. ..|+-=+|.-++
T Consensus 56 viIa~AG~aa~Lpgvva~~t------~~PVIgvP~~~~ 87 (156)
T TIGR01162 56 VIIAGAGGAAHLPGMVAALT------PLPVIGVPVPSK 87 (156)
T ss_pred EEEEeCCccchhHHHHHhcc------CCCEEEecCCcc
Confidence 35778999999999988874 345544566543
No 143
>PRK00536 speE spermidine synthase; Provisional
Probab=26.09 E-value=49 Score=31.53 Aligned_cols=17 Identities=41% Similarity=0.290 Sum_probs=12.5
Q ss_pred cEEEEEcCc-hHHHHHHH
Q 019940 150 LRLIVAGGD-GTASWLLG 166 (333)
Q Consensus 150 ~~IVv~GGD-GTvneVln 166 (333)
..+|+-||| ||+-||+.
T Consensus 75 ~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFK 92 (262)
T ss_pred eEEEEcCCchHHHHHHHC
Confidence 357778889 68888864
No 144
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=25.71 E-value=2.1e+02 Score=31.61 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=29.0
Q ss_pred CcEEEEEcCchHHHHHH----------HHHhhCC--------CCCCCCEEEEeCCCCcchh
Q 019940 149 RLRLIVAGGDGTASWLL----------GVVSDLK--------LPHSPPVATVPLGTGNNIP 191 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVl----------n~l~~~~--------~~~~~plgiIP~GTGNDfA 191 (333)
-+.+|++|||||+.-+. ..|.+.. ....+++--||-==-||++
T Consensus 98 Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 98 ITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred CCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 35799999999997653 2222210 1135778888887799997
No 145
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=25.17 E-value=2e+02 Score=30.68 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=28.6
Q ss_pred cEEEEEcCchHHHHHHH---HHhhCCCCCCCCEEEEeCCCCcchhhhc
Q 019940 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIPFSF 194 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln---~l~~~~~~~~~plgiIP~GTGNDfAR~L 194 (333)
+.+|++|||||...+.. .+.+. ..++++--||-==-||+.-..
T Consensus 192 d~LViIGGddS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDL~~td 237 (568)
T PLN02251 192 DGLVVIGGDDSNTNACLLAEYFRAK--NLKTRVIGCPKTIDGDLKSKE 237 (568)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhc--CCCeeEEEeCceEeCCCCCCc
Confidence 56999999999876543 22211 234667777876689987543
No 146
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.35 E-value=80 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=22.0
Q ss_pred cEEEEEcCchHHHHHHHHHhh--CCCCCCCCEEEEe
Q 019940 150 LRLIVAGGDGTASWLLGVVSD--LKLPHSPPVATVP 183 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~--~~~~~~~plgiIP 183 (333)
..|+.-||=||+-|+...+.- +....+.|+.++=
T Consensus 56 a~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 56 AFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp EEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred EEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 457788999999999998753 2222344666653
No 147
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.09 E-value=38 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCcchhhhcCCCCCCCCCchHHHHHHHHHHH-cCCeEeEEEE
Q 019940 186 TGNNIPFSFGWGKKNPNTDQQAVLSFLEQVK-NAKEMQIDSW 226 (333)
Q Consensus 186 TGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~-~~~~~~iD~~ 226 (333)
|-.|+|+.|+++. +.++.+|+.+. +|++++++..
T Consensus 16 S~~eLa~~~~~s~-------~~ve~mL~~l~~kG~I~~~~~~ 50 (69)
T PF09012_consen 16 SLAELAREFGISP-------EAVEAMLEQLIRKGYIRKVDMS 50 (69)
T ss_dssp EHHHHHHHTT--H-------HHHHHHHHHHHCCTSCEEEEEE
T ss_pred CHHHHHHHHCcCH-------HHHHHHHHHHHHCCcEEEecCC
Confidence 3579999999986 37888888775 7999988754
No 148
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.69 E-value=1e+02 Score=25.90 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=32.4
Q ss_pred EEEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcC
Q 019940 153 IVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (333)
Q Consensus 153 Vv~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~ 218 (333)
..++|+.|-+ ++..+.+.-...++.+-+|=+| +||+.+.. +. ..-.++++++++.+...
T Consensus 42 ~g~~G~~~~~-~~~~l~~~~~~~~pd~v~i~~G-~ND~~~~~--~~---~~~~~~l~~li~~~~~~ 100 (177)
T cd01822 42 AGVSGDTTAG-GLARLPALLAQHKPDLVILELG-GNDGLRGI--PP---DQTRANLRQMIETAQAR 100 (177)
T ss_pred cCcCCcccHH-HHHHHHHHHHhcCCCEEEEecc-CcccccCC--CH---HHHHHHHHHHHHHHHHC
Confidence 3667776654 3333321101136779999999 69975432 11 12234667777777654
No 149
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=23.49 E-value=1.2e+02 Score=35.43 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=30.4
Q ss_pred cEEEEEcCchHHHHHHHH---HhhCC---CCCCCCEEEEeCCCCcchhh
Q 019940 150 LRLIVAGGDGTASWLLGV---VSDLK---LPHSPPVATVPLGTGNNIPF 192 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~---l~~~~---~~~~~plgiIP~GTGNDfAR 192 (333)
+.+|++|||||+.....- +.+.+ ....+++--||.==-||+..
T Consensus 802 d~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 802 RAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred CEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCC
Confidence 579999999999865431 11111 12468899999888999986
No 150
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=23.24 E-value=2.3e+02 Score=26.90 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=19.7
Q ss_pred CcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEeC
Q 019940 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (333)
Q Consensus 149 ~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP~ 184 (333)
.+.||++|| |.|..++.-+... .-..+++-.||.
T Consensus 30 ~~~iiaiGG-Gvv~Dl~GFaAs~-y~RGi~~i~vPT 63 (260)
T PF01761_consen 30 DDLIIAIGG-GVVGDLAGFAAST-YMRGIPFIQVPT 63 (260)
T ss_dssp TEEEEEEES-HHHHHHHHHHHHH-BTT--EEEEEE-
T ss_pred CCeEEEECC-hHHHHHHHHHHHH-HccCCceEeccc
Confidence 345666655 8888888766542 225667777763
No 151
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=22.90 E-value=1.2e+02 Score=29.25 Aligned_cols=13 Identities=54% Similarity=1.022 Sum_probs=10.5
Q ss_pred CcEEEEEcCchHH
Q 019940 149 RLRLIVAGGDGTA 161 (333)
Q Consensus 149 ~~~IVv~GGDGTv 161 (333)
...||++.|||..
T Consensus 71 d~~VVai~GDG~f 83 (287)
T TIGR02177 71 HLKVIVVGGDGDL 83 (287)
T ss_pred CCcEEEEeCchHH
Confidence 3469999999984
No 152
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.72 E-value=59 Score=31.27 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=14.2
Q ss_pred CcEEEEEcCch-HHHHHHHHH
Q 019940 149 RLRLIVAGGDG-TASWLLGVV 168 (333)
Q Consensus 149 ~~~IVv~GGDG-TvneVln~l 168 (333)
...||+++||| +.+.-++.|
T Consensus 77 d~~VV~i~GDG~~f~ig~~eL 97 (279)
T PRK11866 77 KLTVIGYGGDGDGYGIGLGHL 97 (279)
T ss_pred CCcEEEEECChHHHHccHHHH
Confidence 45799999999 465555544
No 153
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.70 E-value=1.1e+02 Score=27.05 Aligned_cols=66 Identities=12% Similarity=-0.039 Sum_probs=33.8
Q ss_pred EEEEcCchHHH-----HHHHHHhhCCCC-CCCCEEEEeCCCCcchhhhcCCCC---CCCCCchHHHHHHHHHHHcC
Q 019940 152 LIVAGGDGTAS-----WLLGVVSDLKLP-HSPPVATVPLGTGNNIPFSFGWGK---KNPNTDQQAVLSFLEQVKNA 218 (333)
Q Consensus 152 IVv~GGDGTvn-----eVln~l~~~~~~-~~~plgiIP~GTGNDfAR~LG~~~---~~~~~~~~~~~~~l~~I~~~ 218 (333)
-..+|||.|.+ +++.-+...-+. .++-+-+|=+|| ||+.+...-+. .....-.+++..+++.+...
T Consensus 44 N~Gi~G~t~~~~~~~~~~l~r~~~~v~~~~~p~~vii~~G~-ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~ 118 (204)
T cd01830 44 NAGIGGNRLLADGLGPSALARFDRDVLSQPGVRTVIILEGV-NDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR 118 (204)
T ss_pred ECCccCcccccCCCChHHHHHHHHHHhcCCCCCEEEEeccc-ccccccccccccCCCCHHHHHHHHHHHHHHHHHC
Confidence 33788998752 444443211011 245677887776 99876542110 00111234566666666543
No 154
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.44 E-value=1e+02 Score=26.95 Aligned_cols=29 Identities=34% Similarity=0.459 Sum_probs=23.3
Q ss_pred cEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEe
Q 019940 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVP 183 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP 183 (333)
..|++-||=||+.|+...+.. .-|+.+++
T Consensus 94 a~IvlpGG~GTL~E~~~a~~~-----~kpv~~l~ 122 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYAL-----GGPVVVLR 122 (159)
T ss_pred EEEEcCCchhHHHHHHHHHHc-----CCCEEEEE
Confidence 357778999999999998863 56777777
No 155
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=21.91 E-value=1.9e+02 Score=33.80 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=29.0
Q ss_pred cEEEEEcCchHHHHHHH---HHhhCCCCCCCCEEEEeCCCCcchhh
Q 019940 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIPF 192 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln---~l~~~~~~~~~plgiIP~GTGNDfAR 192 (333)
+.+|++|||||...+.. .+.+. ..++++--||-==-||+..
T Consensus 198 d~LVvIGGDgS~t~A~~LaEy~~~~--g~~I~VIGIPKTIDNDL~g 241 (1328)
T PTZ00468 198 HGLVVIGGDDSNTNAAVLAEYFKRN--SSSTVVVGCPKTIDGDLKN 241 (1328)
T ss_pred CEEEEECCchHHHHHHHHHHHHHhc--CCCeeEEEEeEEEcCCCCC
Confidence 56999999999975532 22221 2357888889888999974
No 156
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=21.91 E-value=1.8e+02 Score=25.55 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=14.8
Q ss_pred cEEEEEcCchHHHHHHHHHh
Q 019940 150 LRLIVAGGDGTASWLLGVVS 169 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~ 169 (333)
..+|++-|||+...-++.+.
T Consensus 60 ~~vv~i~GDG~f~m~~~el~ 79 (179)
T cd03372 60 RKVIVIDGDGSLLMNLGALA 79 (179)
T ss_pred CcEEEEECCcHHHhCHHHHH
Confidence 56999999999965555543
No 157
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.72 E-value=86 Score=27.99 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred cEEEEEcCchHHHHHHHHHhh--CCCCCCCCEEEE
Q 019940 150 LRLIVAGGDGTASWLLGVVSD--LKLPHSPPVATV 182 (333)
Q Consensus 150 ~~IVv~GGDGTvneVln~l~~--~~~~~~~plgiI 182 (333)
..|+.-||=||+.|+...+.- +.. .+.|+.++
T Consensus 99 a~I~lPGG~GTL~El~e~~~~~qlg~-~~kPiil~ 132 (178)
T TIGR00730 99 AFIAMPGGFGTLEELFEVLTWAQLGI-HQKPIILF 132 (178)
T ss_pred EEEEcCCCcchHHHHHHHHHHHHcCC-CCCCEEEE
Confidence 357788999999999998753 222 34566666
No 158
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=21.31 E-value=1.1e+02 Score=26.94 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=30.2
Q ss_pred EEcCchHHHHHHHHHhhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc
Q 019940 154 VAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 217 (333)
Q Consensus 154 v~GGDGTvneVln~l~~~~~~~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~ 217 (333)
.++||-|.. ++.-+.+.-...++.+-+|=+|| ||..+. .+. ....++++++++.+..
T Consensus 50 Gi~G~tt~~-~~~rl~~~l~~~~pd~Vii~~Gt-ND~~~~--~~~---~~~~~~l~~li~~~~~ 106 (191)
T PRK10528 50 SISGDTSQQ-GLARLPALLKQHQPRWVLVELGG-NDGLRG--FPP---QQTEQTLRQIIQDVKA 106 (191)
T ss_pred CcCcccHHH-HHHHHHHHHHhcCCCEEEEEecc-CcCccC--CCH---HHHHHHHHHHHHHHHH
Confidence 556776653 23222221011356788888888 887542 221 1223566667776664
No 159
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=20.64 E-value=1.1e+02 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHhhCCCCCCCCEEEEe
Q 019940 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVP 183 (333)
Q Consensus 148 ~~~~IVv~GGDGTvneVln~l~~~~~~~~~plgiIP 183 (333)
-+..+|+-++.||++.++..+.......-..+|+|=
T Consensus 130 a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~ 165 (199)
T PF13500_consen 130 APVILVASGRLGTINHTLLTIEALKQRGIRVLGVIL 165 (199)
T ss_dssp -EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEE
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 346788999999999998776532211223466664
No 160
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.43 E-value=1.5e+02 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=25.9
Q ss_pred CCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcC
Q 019940 175 HSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (333)
Q Consensus 175 ~~~plgiIP~GTGNDfAR~LG~~~~~~~~~~~~~~~~l~~I~~~ 218 (333)
.++-+-+|=+|| ||..+..+++. ..-.++++++++.+.+.
T Consensus 78 ~~pd~vii~lGt-ND~~~~~~~~~---~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 78 SPLDLVIIMLGT-NDLKSYFNLSA---AEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCEEEEeccc-cccccccCCCH---HHHHHHHHHHHHHHHhc
Confidence 356788999998 99876554432 12234666777777653
No 161
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=20.08 E-value=1.6e+02 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=13.1
Q ss_pred cEEEEEcCchHH-HHHHHHH
Q 019940 150 LRLIVAGGDGTA-SWLLGVV 168 (333)
Q Consensus 150 ~~IVv~GGDGTv-neVln~l 168 (333)
..||++.|||++ .--+++|
T Consensus 81 r~VV~i~GDG~~~~m~~~eL 100 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQAL 100 (235)
T ss_pred CeEEEEEcCchHHhhHHHHH
Confidence 469999999994 3444444
Done!