Query 019941
Match_columns 333
No_of_seqs 197 out of 1616
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 5.3E-76 1.1E-80 582.2 32.7 332 2-333 91-424 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 1.1E-74 2.4E-79 572.0 30.3 331 2-332 84-415 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 7.5E-58 1.6E-62 425.5 18.0 331 2-332 85-417 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 3.8E-56 8.2E-61 419.5 21.5 214 27-332 47-266 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 3.5E-52 7.6E-57 389.3 23.5 216 19-330 23-244 (245)
6 KOG1535 Predicted fumarylaceto 100.0 2.1E-47 4.6E-52 341.0 18.3 194 29-282 2-202 (217)
7 PRK15203 4-hydroxyphenylacetat 100.0 6.4E-46 1.4E-50 371.5 22.0 191 47-330 12-205 (429)
8 PRK10691 hypothetical protein; 100.0 4.4E-44 9.4E-49 329.7 21.5 190 47-328 26-218 (219)
9 PRK15203 4-hydroxyphenylacetat 100.0 1.1E-43 2.4E-48 355.4 23.1 206 32-332 215-426 (429)
10 PRK12764 hypothetical protein; 100.0 7.5E-42 1.6E-46 347.8 21.9 201 42-332 22-230 (500)
11 TIGR02305 HpaG-N-term 4-hydrox 100.0 2.2E-40 4.7E-45 302.0 20.8 194 47-328 10-205 (205)
12 PF01557 FAA_hydrolase: Fumary 100.0 6.4E-41 1.4E-45 306.8 16.2 204 47-329 9-218 (218)
13 TIGR03220 catechol_dmpE 2-oxop 99.9 2E-23 4.3E-28 196.4 16.2 164 79-291 79-252 (255)
14 PRK11342 mhpD 2-keto-4-penteno 99.9 5.4E-22 1.2E-26 187.4 16.6 172 80-331 84-262 (262)
15 TIGR02312 HpaH 2-oxo-hepta-3-e 99.8 1.2E-18 2.6E-23 165.2 16.0 168 79-291 84-263 (267)
16 TIGR03218 catechol_dmpH 4-oxal 99.6 1.8E-14 3.9E-19 136.4 16.4 150 111-291 104-260 (263)
17 COG3970 Fumarylacetoacetate (F 99.6 1E-14 2.2E-19 138.3 13.7 185 73-332 169-357 (379)
18 COG3971 2-keto-4-pentenoate hy 99.5 3.2E-14 7E-19 132.7 10.6 167 80-292 85-259 (264)
19 PF11010 DUF2848: Protein of u 98.3 1.1E-05 2.4E-10 73.2 13.0 170 48-285 12-182 (194)
20 COG3802 GguC Uncharacterized p 97.8 6.2E-05 1.3E-09 70.8 8.2 136 72-263 140-282 (333)
21 PRK10691 hypothetical protein; 82.0 1.7 3.7E-05 40.2 4.0 10 298-307 180-189 (219)
22 PRK06488 sulfur carrier protei 63.4 31 0.00067 25.3 6.1 19 227-250 6-24 (65)
23 TIGR03220 catechol_dmpE 2-oxop 58.1 11 0.00024 35.5 3.6 35 274-325 218-252 (255)
24 cd05790 S1_Rrp40 S1_Rrp40: Rrp 55.8 33 0.00071 27.4 5.3 48 258-310 5-60 (86)
25 PRK12442 translation initiatio 45.4 22 0.00048 28.6 2.8 17 295-311 42-58 (87)
26 PF10370 DUF2437: Domain of un 43.5 7.9 0.00017 27.5 0.0 16 20-35 35-50 (50)
27 TIGR00008 infA translation ini 42.2 34 0.00074 26.2 3.3 17 295-311 40-56 (68)
28 PRK07696 sulfur carrier protei 39.2 50 0.0011 24.7 3.8 16 294-309 46-61 (67)
29 smart00652 eIF1a eukaryotic tr 39.1 52 0.0011 26.0 4.1 16 296-311 40-55 (83)
30 PRK07440 hypothetical protein; 39.0 61 0.0013 24.5 4.3 15 295-309 50-64 (70)
31 COG0361 InfA Translation initi 36.6 42 0.0009 26.3 3.1 17 295-311 42-58 (75)
32 PRK06083 sulfur carrier protei 35.3 76 0.0016 25.1 4.5 15 295-309 64-78 (84)
33 COG1096 Predicted RNA-binding 34.8 1.2E+02 0.0027 27.7 6.3 54 257-310 8-72 (188)
34 PF03143 GTP_EFTU_D3: Elongati 32.7 64 0.0014 25.7 3.8 45 271-327 54-98 (99)
35 TIGR03218 catechol_dmpH 4-oxal 31.7 72 0.0016 30.3 4.5 56 253-325 185-260 (263)
36 KOG1379 Serine/threonine prote 30.7 14 0.00031 36.3 -0.4 43 226-268 197-254 (330)
37 cd05793 S1_IF1A S1_IF1A: Trans 30.0 87 0.0019 24.3 4.0 16 296-311 35-50 (77)
38 cd03701 IF2_IF5B_II IF2_IF5B_I 29.9 72 0.0016 25.5 3.6 19 253-271 23-41 (95)
39 COG1261 FlgA Flagellar basal b 29.6 96 0.0021 29.1 4.8 71 236-309 126-198 (220)
40 KOG0666 Cyclin C-dependent kin 28.6 49 0.0011 33.2 2.8 74 232-313 130-206 (438)
41 PF01176 eIF-1a: Translation i 27.7 37 0.0008 25.3 1.5 17 295-311 37-53 (65)
42 PRK04012 translation initiatio 26.5 1.1E+02 0.0023 25.2 4.1 16 296-311 56-71 (100)
43 cd04456 S1_IF1A_like S1_IF1A_l 26.3 1.2E+02 0.0026 23.6 4.1 16 296-311 35-50 (78)
44 KOG1004 Exosomal 3'-5' exoribo 23.3 1.7E+02 0.0036 27.5 5.1 69 252-325 58-146 (230)
45 TIGR02312 HpaH 2-oxo-hepta-3-e 22.2 1.1E+02 0.0025 29.0 4.0 52 259-327 195-265 (267)
46 cd03702 IF2_mtIF2_II This fami 21.2 1.6E+02 0.0035 23.6 4.2 18 253-270 23-40 (95)
47 PRK12618 flgA flagellar basal 20.9 1.1E+02 0.0023 26.5 3.2 70 237-309 47-118 (141)
48 PRK08582 hypothetical protein; 20.3 1.3E+02 0.0028 25.9 3.6 53 255-310 1-60 (139)
49 PF01982 CTP-dep_RFKase: Domai 20.2 65 0.0014 27.4 1.7 13 298-310 109-121 (121)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=5.3e-76 Score=582.17 Aligned_cols=332 Identities=76% Similarity=1.296 Sum_probs=305.1
Q ss_pred HHHHhccCchhchhhhhhccCCccccCCcEEeCCcccCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCc
Q 019941 2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRAS 81 (333)
Q Consensus 2 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~v~ll~Pv~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~s 81 (333)
||++|+.....|++...+.....+|+++|+|++|+.+++|++|+++++|+.|+|+.|+++.++.+|+|++.|++|+|+++
T Consensus 91 l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~s 170 (424)
T PLN02856 91 LQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRAS 170 (424)
T ss_pred HHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCc
Confidence 67888777777777777777789999999999999989999999999999999999888777788999999999999999
Q ss_pred eeeeCCCeeecCCCCCCC-CCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhh
Q 019941 82 SVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 160 (333)
Q Consensus 82 sl~~~g~~i~~P~~~~~~-~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~ 160 (333)
|++++|++|.+|.++..+ .+...|.+.+++.+|||+||++||||.++.|++|++++|++||+|||++||||+||+|.|+
T Consensus 171 Svv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE 250 (424)
T PLN02856 171 SVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWE 250 (424)
T ss_pred eEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhh
Confidence 999999999999986543 2233478888999999999999999987779999999999999999999999999999999
Q ss_pred hcCCCCccccccCCccCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhc
Q 019941 161 YVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 240 (333)
Q Consensus 161 ~~~~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi 240 (333)
+.+++|+++|+|++++||||||.|+++++++..|.++|..+|||.+++..+++|+|+|+++.+.+.||+++|++++++|+
T Consensus 251 ~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~ 330 (424)
T PLN02856 251 YVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLY 330 (424)
T ss_pred cccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcC
Confidence 98899999999999999999999999999888899999999999999999999999988865444488999999999999
Q ss_pred cCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCcee
Q 019941 241 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTV 319 (333)
Q Consensus 241 ~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~ 319 (333)
|+++|+|+|++|++++|+|||||+||||+|+++.+.||.+|++++|..++++ ++..+.||++||+|+++++|.++|.+|
T Consensus 331 ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~~~g~~i 410 (424)
T PLN02856 331 WTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRV 410 (424)
T ss_pred CCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEECCCCccE
Confidence 9999999986689999999999999999999999999999999999999998 566799999999999999999999999
Q ss_pred eeeceeeeEeeCCC
Q 019941 320 GFGTCSGKIVPSTP 333 (333)
Q Consensus 320 g~G~~~~~vv~~~~ 333 (333)
|||+|+++|++|+|
T Consensus 411 gfG~~~g~v~pa~~ 424 (424)
T PLN02856 411 GFGTCSGKVLPALP 424 (424)
T ss_pred eeeeeeeEEecCCC
Confidence 99999999999976
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=1.1e-74 Score=571.95 Aligned_cols=331 Identities=62% Similarity=1.146 Sum_probs=302.5
Q ss_pred HHHHhccCchhchhhhhhccCCccccCCcEEeCCcccCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCc
Q 019941 2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRAS 81 (333)
Q Consensus 2 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~v~ll~Pv~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~s 81 (333)
||++|+.....|+++..+.....+|+++|+|++|+..++|++|+|+.+|+.|.|+.|+++.++.+|+|++.|++|+|+++
T Consensus 84 l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~s 163 (415)
T TIGR01266 84 LQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRAS 163 (415)
T ss_pred HHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCc
Confidence 67777776767777777777789999999999999999999999999999999999998888899999999999999999
Q ss_pred eeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhh
Q 019941 82 SVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 161 (333)
Q Consensus 82 sl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~ 161 (333)
|++++|++|.+|.++..+.....|.+.+++.+|||+||++||||.++.|+++++++|++||+||+++||||+||+|.|++
T Consensus 164 Svv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDiQ~wE~ 243 (415)
T TIGR01266 164 SIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDIQAWEY 243 (415)
T ss_pred eEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhhhhhhc
Confidence 99999999999998764433344788889999999999999999877799999999999999999999999999999999
Q ss_pred cCCCCccccccCCccCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhcc
Q 019941 162 VPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 241 (333)
Q Consensus 162 ~~~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~ 241 (333)
.+++|+++|+|+|++||||||.|++++++...+.++|+.+|||.+.++..++|.+++++|++.+.+.+++|++++++|+|
T Consensus 244 ~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~~~M~w 323 (415)
T TIGR01266 244 VPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNFKHMYW 323 (415)
T ss_pred cccCccccccCCCCCcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCHHhcCc
Confidence 88999999999999999999999999888877888999999999998888888888888655434556999999999999
Q ss_pred CHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCceee
Q 019941 242 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVG 320 (333)
Q Consensus 242 ~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~g 320 (333)
+++|+|+|+++++++|+|||||+||||+|+++.+.||.+|++++|..++.+ ++..+.||++||+|+++++|.++|++||
T Consensus 324 s~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~lE~t~~g~~~v~l~~g~~r~fL~dGD~V~~~~~~~~~g~~ig 403 (415)
T TIGR01266 324 TMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSMLELSWKGKKPIDVGQGETRTFLEDGDEVILRGHCQGEGYRVG 403 (415)
T ss_pred CHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEEEEEeCCeeeeecCCCCCCCCCCCCCEEEEEEEECCCCCcEe
Confidence 999999999558999999999999999999999999999999999999887 5677899999999999999999999999
Q ss_pred eeceeeeEeeCC
Q 019941 321 FGTCSGKIVPST 332 (333)
Q Consensus 321 ~G~~~~~vv~~~ 332 (333)
||+|+++|++|.
T Consensus 404 fGe~~g~i~pa~ 415 (415)
T TIGR01266 404 FGECAGKVLPAL 415 (415)
T ss_pred eeeeeeEEecCC
Confidence 999999999984
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-58 Score=425.47 Aligned_cols=331 Identities=61% Similarity=1.098 Sum_probs=312.5
Q ss_pred HHHHhccCchhchhhhhhccCCccccCCcEEeCCcccCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCc
Q 019941 2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRAS 81 (333)
Q Consensus 2 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~v~ll~Pv~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~s 81 (333)
+|+||+.+.+.|+++..|+.-..+|-++.+|+.|-..++|++|+.+..|+.+.|-.||++++..-|+|.+.|+.|.+++|
T Consensus 85 ~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIMFRgkeNALMPNW~hLPVGYHGRAS 164 (420)
T KOG2843|consen 85 TQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIMFRGKENALMPNWRHLPVGYHGRAS 164 (420)
T ss_pred HHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEEEeccccccCCccccccccccCcee
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEc-CCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhh
Q 019941 82 SVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 160 (333)
Q Consensus 82 sl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIG-k~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~ 160 (333)
|++.+|.+|.+|-++-.|.+--.|.++.++.+|+|.|+|+.+| +....|..|..++|+++|||+++.|||||||+|.||
T Consensus 165 SvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDWSARDIQkWE 244 (420)
T KOG2843|consen 165 SVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDWSARDIQKWE 244 (420)
T ss_pred eEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecccchhhcccce
Confidence 9999999999999876554444489999999999999999998 555567899999999999999999999999999999
Q ss_pred hcCCCCccccccCCccCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhc
Q 019941 161 YVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 240 (333)
Q Consensus 161 ~~~~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi 240 (333)
+.++|++.+|||.|.++||+|+-+.+.++...-|+|+|..+|||...+|-+++|.|+|.++++......+++.+|.+.|+
T Consensus 245 YVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKsNFKhlY 324 (420)
T KOG2843|consen 245 YVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKSNFKHLY 324 (420)
T ss_pred eecccchhhhhcccccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecccchhhh
Confidence 99999999999999999999999999999988999999999999999999999999999998875555789999999999
Q ss_pred cCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCcee
Q 019941 241 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTV 319 (333)
Q Consensus 241 ~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~ 319 (333)
|++-|.++|++-.+|.|+|||++.+||.+|..+..-|+.+|..|.|.+++++ +++.+.||++||+|-+++.|+.||.++
T Consensus 325 WT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGSmLELsWkGtK~~~lg~g~tRKFL~DgDEVii~G~CeknG~RI 404 (420)
T KOG2843|consen 325 WTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGSMLELSWKGTKTLELGGGKTRKFLQDGDEVIIRGHCEKNGLRI 404 (420)
T ss_pred hhHHHHhhhcccccccCCccceeccccccCCCCcchhhhhhhhhcCceeeecCCchhhhhhhcCCeEEEEeeecCCceEE
Confidence 9999999999889999999999999999999999999999999999999999 478899999999999999999999999
Q ss_pred eeeceeeeEeeCC
Q 019941 320 GFGTCSGKIVPST 332 (333)
Q Consensus 320 g~G~~~~~vv~~~ 332 (333)
|||+|+.+|.+|.
T Consensus 405 GFGeC~GkVLPA~ 417 (420)
T KOG2843|consen 405 GFGECVGKVLPAH 417 (420)
T ss_pred ecccccccccccc
Confidence 9999999999874
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-56 Score=419.54 Aligned_cols=214 Identities=31% Similarity=0.424 Sum_probs=188.3
Q ss_pred cCCcEEeCCcccCCcceEEe----cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCC
Q 019941 27 MGKVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGN 102 (333)
Q Consensus 27 ~~~v~ll~Pv~~~~~~~~~~----~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~ 102 (333)
+.++++++|+.++. +++| |.+|++|++..+ . . ...|.+|+|+++++++++++|.+|..
T Consensus 47 ~~~~~~~~~~~~~~--ki~cvG~NY~~Ha~E~~~~~---~---~---p~~P~~F~K~~~a~~~~~~~i~~P~~------- 108 (266)
T COG0179 47 LAEVRLLAPLPPPG--KIVCVGRNYADHAEEMGKDR---D---I---PEEPVFFLKPPTAVIGPNDPIPLPPG------- 108 (266)
T ss_pred ccccccccCCCCCC--cEEEEechHHHHHHHhccCC---C---C---CCCCeeeccCcccccCCCCceECCCC-------
Confidence 66788899988553 4555 567999998641 1 1 25689999999999999999999987
Q ss_pred CCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCcc
Q 019941 103 SPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWI 180 (333)
Q Consensus 103 ~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~i 180 (333)
+.++|||+||||||||+ ++++++++|++||+|||++||||+||+|.+++ ..+|+++|+||++ +|||+
T Consensus 109 -------s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~~~-~~~w~~aK~~d~~~Pigp~i 177 (266)
T COG0179 109 -------SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDLQMEEK-GRPWTRAKGFDTFAPVGPWI 177 (266)
T ss_pred -------CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeeeeecchhcchhhhh-cCCcccccccCCCCCceeEE
Confidence 78899999999999999 99999999999999999999999999997643 3589999999995 99999
Q ss_pred ccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCC
Q 019941 181 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSG 260 (333)
Q Consensus 181 vt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pG 260 (333)
++.+++.+ +.++.|+++| |||+||+++|++|+|++++||+|+ |++|||+||
T Consensus 178 v~~~e~~d--------------------~~~l~l~~~v--------NGe~~Q~g~t~~Mi~~i~~lI~~l-S~~~tL~pG 228 (266)
T COG0179 178 VTKDEISD--------------------PQNLPLSLRV--------NGEVRQRGNTSDMIFSIPELIAYL-SRFMTLEPG 228 (266)
T ss_pred eccccCCC--------------------CccceEEEEE--------CCEEEecCcHHHcccCHHHHHHHH-hCCcccCCC
Confidence 99988754 4668899988 999999999999999999999999 899999999
Q ss_pred CEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeCC
Q 019941 261 DLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 332 (333)
Q Consensus 261 DvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~~ 332 (333)
|||+||||+|++ ||++||+|+++ ++ |||+|+|+|+++.
T Consensus 229 DvI~TGTP~Gvg--------------------------~l~~GD~v~~~--ie------giG~l~n~v~~~~ 266 (266)
T COG0179 229 DVILTGTPSGVG--------------------------FLKPGDVVEVE--IE------GIGELENTVVKED 266 (266)
T ss_pred CEEEeCCCCCcc--------------------------cCCCCCEEEEE--ec------ceeEEEEEEeeCC
Confidence 999999999974 77999999999 45 8999999999863
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=3.5e-52 Score=389.31 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=189.2
Q ss_pred hccCCccccCCcEEeCCcccCCcceEEe-c---HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCC
Q 019941 19 LRQKSLVPMGKVEMLLPMEIGDYTDFFS-S---MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPR 94 (333)
Q Consensus 19 ~~~~~~~~~~~v~ll~Pv~~~~~~~~~~-~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~ 94 (333)
...+..++++++++++|+.++ +++| + .+|++|++.. .| +.|++|+|+++|++++|++|.+|.
T Consensus 23 ~~~~~~~~~~~v~ll~P~~p~---ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~Kp~~s~~g~~~~i~~P~ 88 (245)
T TIGR02303 23 TEDGRALPPEQVTWLPPFEPG---TIFALGLNYADHASELGFS--------PP---EEPLVFLKGNNTLTGHKGVTYRPK 88 (245)
T ss_pred ccCCCccccccceEcCCCCCC---eEEEEeCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCcEECCC
Confidence 457778999999999999753 4555 4 5578777632 23 579999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCC
Q 019941 95 GQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT 174 (333)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt 174 (333)
. +..+|||+||++||||+ ++++++++|++||+|||++||||+||+|...+ .+|+++|+||+
T Consensus 89 ~--------------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~~~~--~~~~~aK~~D~ 149 (245)
T TIGR02303 89 D--------------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLGYTIANDYAIRDYLENYY--RPNLRVKNRDT 149 (245)
T ss_pred C--------------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEeecchHHHHhhhc--CCcccccCCCC
Confidence 6 67899999999999999 99999999999999999999999999997543 47999999999
Q ss_pred c--cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHh
Q 019941 175 T--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTI 252 (333)
Q Consensus 175 ~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S 252 (333)
+ +|||+++++++.+ +.++.+++++ ||+++|++++++|+|++.++|+|+ |
T Consensus 150 ~~plGp~i~t~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~ml~~v~~Li~~l-s 200 (245)
T TIGR02303 150 FTPIGPWIVDKEDVED--------------------PMNLWLRTYV--------NGELTQEGNTSDMIFSVAELIEYL-S 200 (245)
T ss_pred CEeeCCcCCCHHHcCC--------------------ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-h
Confidence 6 9999999988843 3568888888 999999999999999999999999 7
Q ss_pred cCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEee
Q 019941 253 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 330 (333)
Q Consensus 253 ~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~ 330 (333)
++++|+|||||+||||.|++ +|++||+|+++ |+ |+|+++|+|+.
T Consensus 201 ~~~tL~pGDvIlTGTp~g~~--------------------------~l~~GD~v~~~--i~------glG~l~n~v~~ 244 (245)
T TIGR02303 201 EFMTLEPGDVILTGTPKGLS--------------------------DVKPGDVVRLE--IE------GVGALENPIVS 244 (245)
T ss_pred cCCCcCCCCEEEcCCCCCCe--------------------------EcCCCCEEEEE--Ec------CceeEEEEEEe
Confidence 99999999999999998864 36899999999 45 89999999984
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=2.1e-47 Score=341.05 Aligned_cols=194 Identities=27% Similarity=0.333 Sum_probs=165.8
Q ss_pred CcEEeCCcccCCcceEEe-cHH---HHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCC
Q 019941 29 KVEMLLPMEIGDYTDFFS-SMH---HAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSP 104 (333)
Q Consensus 29 ~v~ll~Pv~~~~~~~~~~-~~~---H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~ 104 (333)
++.++.|+..+ +++.| |+| |++|++.. -| ++|+||.|+.||++++|++|..|++
T Consensus 2 ~~~~~~~~~~~--~KIVcVg~NY~dh~~E~~~~--------~P---keP~~FlKptss~v~~g~~i~~p~~--------- 59 (217)
T KOG1535|consen 2 DVMLLRPLKWP--TKIVCVGRNYADHCKELNNP--------VP---KEPFFFLKPTSSIVGPGGPIVIPPG--------- 59 (217)
T ss_pred ccchhhhhhcC--CeEEEecccHHHHHHHhCCC--------CC---CCCeEEeecchhhcCCCCceEcCCC---------
Confidence 46677888765 56777 655 77776542 22 6899999999999999999999987
Q ss_pred CCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhc-CCCCccccccCCc--cCCccc
Q 019941 105 PPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIV 181 (333)
Q Consensus 105 ~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~-~~~~~~aK~~dt~--lGP~iv 181 (333)
++.+|||+||++||||. |+++++.+|++||+||+++.|+||||+|...+. +++|+.||+|||| +|+ ++
T Consensus 60 -----~~~lh~EvEL~vVigK~---~~~v~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis~-~v 130 (217)
T KOG1535|consen 60 -----SKGLHHEVELAVVIGKK---GSSVKKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPISA-IV 130 (217)
T ss_pred -----cCccceeEEEEEEeccc---cccCChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCcccc-cc
Confidence 78899999999999999 999999999999999999999999999987553 5899999999996 995 55
Q ss_pred cccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCC
Q 019941 182 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGD 261 (333)
Q Consensus 182 t~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGD 261 (333)
+.+.+.+ +.++.|.|+| ||++||+|+|++|+|+++.+|+|+ |+++||+|||
T Consensus 131 pk~~v~D--------------------p~nl~L~l~V--------nG~~~Q~g~T~~mifkip~li~~i-s~~~tL~~GD 181 (217)
T KOG1535|consen 131 PKEKVPD--------------------PHNLWLWLRV--------NGETRQTGNTSLMIFKIPDLISRL-SQIMTLEPGD 181 (217)
T ss_pred cHHHCCC--------------------ccceEEEEEE--------ccEEEecCchhhheecHHHHHHHH-hhheeecCCC
Confidence 6666643 5788888888 999999999999999999999999 8999999999
Q ss_pred EEEcCCCCCCccCCCCcEEEE
Q 019941 262 LLGTGTISGPEPESLGCLLEL 282 (333)
Q Consensus 262 vI~TGTp~Gv~~~~~Gd~~e~ 282 (333)
||+||||.|++++++||.+++
T Consensus 182 vILTGTP~GVg~v~~Gd~i~~ 202 (217)
T KOG1535|consen 182 VILTGTPEGVGEVKPGDVIQC 202 (217)
T ss_pred EEEecCCCccccccCCCEEEe
Confidence 999999999988743333333
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=6.4e-46 Score=371.49 Aligned_cols=191 Identities=20% Similarity=0.227 Sum_probs=158.4
Q ss_pred cHHHHHHhccccCC-CCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcC
Q 019941 47 SMHHAKNCGTIFRG-PANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGP 125 (333)
Q Consensus 47 ~~~H~~~~~~~~~~-~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk 125 (333)
|++|++++++.+.. +.+ ..| +.|++|+|++++++++|++|.+|.+ ..+|||+||++||||
T Consensus 12 y~~~~~~~~~~~~~~~~~-~~p---~~P~~F~Kp~~al~g~~~~i~~P~~---------------~~~~~E~EL~vvIGk 72 (429)
T PRK15203 12 HRSQLDAWQEAFQQSPYK-APP---KTAVWFIKPRNTVIRCGEPIPFPQG---------------EKVLSGATVALIVGK 72 (429)
T ss_pred hHHHHHhhhhhccccccC-CCC---CCCEEEecCcceeeCCCCcEECCCC---------------CCceEEEEEEEEECC
Confidence 45688776543211 111 123 5799999999999999999999974 369999999999999
Q ss_pred CCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCcc
Q 019941 126 GNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 203 (333)
Q Consensus 126 ~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~ 203 (333)
+ ++++++++|++||+|||++||+|+||+|.. .+|.++|+||+| +|||++.++
T Consensus 73 ~---~~~v~~~~A~~~V~Gyti~nD~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~~~~------------------- 126 (429)
T PRK15203 73 T---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGETVALSN------------------- 126 (429)
T ss_pred c---cCCCCHHHHhhheeEEEEEEEeechhhccc----CCcccccCCCCCcccCCeEECCC-------------------
Confidence 9 999999999999999999999999998853 368999999996 999986421
Q ss_pred ccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEE
Q 019941 204 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 283 (333)
Q Consensus 204 ~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~ 283 (333)
+.++.|+++| ||+++|+++|++|+|+++++|+|+ |+++||+|||||+||||+|++
T Consensus 127 -----~~~l~i~~~v--------NGe~~Q~~~t~~Mi~~~~~lis~l-S~~~tL~pGDvI~TGTP~g~~----------- 181 (429)
T PRK15203 127 -----VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQARV----------- 181 (429)
T ss_pred -----ccceEEEEEE--------CCEEEecCCHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCce-----------
Confidence 2458888888 999999999999999999999999 899999999999999999864
Q ss_pred ecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEee
Q 019941 284 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 330 (333)
Q Consensus 284 ~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~ 330 (333)
+|++||+|+++ |+ |+|+|+|+|+.
T Consensus 182 ---------------~l~~GD~v~~~--i~------gig~l~n~v~~ 205 (429)
T PRK15203 182 ---------------EIQPGDRVRVL--AE------GFPPLENPVVD 205 (429)
T ss_pred ---------------ECCCCCEEEEE--Ee------CeeEEEEEEEE
Confidence 45677777766 34 67777777764
No 8
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-44 Score=329.70 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=161.6
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCC
Q 019941 47 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 126 (333)
Q Consensus 47 ~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~ 126 (333)
|++|+++++.. .| ..|++|+|+++++++++++|.+|.. +..+|||+|||+||||+
T Consensus 26 y~~h~~e~~~~--------~p---~~P~~F~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvigk~ 80 (219)
T PRK10691 26 YAKHIKEMGSA--------TP---EEPVLFIKPETALCDLRQPLAIPKD--------------FGSVHHEVELAVLIGAT 80 (219)
T ss_pred HHHHHHHhCCC--------CC---CCCEEEECCcceeeCCCCcEECCCC--------------CCCeeEEEEEEEEECCC
Confidence 45687777532 23 4699999999999999999999986 67899999999999999
Q ss_pred CCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcC-CCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCcc
Q 019941 127 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP-LGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 203 (333)
Q Consensus 127 ~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~-~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~ 203 (333)
++++++++|++||+||+++||+|+||+|.+.... .+|.++|+||++ +|||+++.+...+
T Consensus 81 ---~~~v~~~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d--------------- 142 (219)
T PRK10691 81 ---LRQATEEHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGD--------------- 142 (219)
T ss_pred ---CCCCCHHHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCC---------------
Confidence 8999999999999999999999999999876432 468899999996 8999976543221
Q ss_pred ccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEE
Q 019941 204 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 283 (333)
Q Consensus 204 ~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~ 283 (333)
+.++.++++| ||+++|++++++|+|++.++|+|+ |++++|+|||||+||||+|+++
T Consensus 143 -----~~~l~i~l~v--------NG~~~q~g~~~~mi~~~~~lia~l-s~~~tL~aGDvI~TGTp~g~~~---------- 198 (219)
T PRK10691 143 -----PQNTTLGLSV--------NGEVRQQGNTADMIHPIVPLIAYM-SRFFTLRAGDVVLTGTPEGVGP---------- 198 (219)
T ss_pred -----ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCccCCCCEEEcCCCCCCEE----------
Confidence 3567888887 999999999999999999999999 7999999999999999998644
Q ss_pred ecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeE
Q 019941 284 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 328 (333)
Q Consensus 284 ~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v 328 (333)
|++||+|+++ |+ |+ +|+|+|
T Consensus 199 ----------------l~~GD~v~~~--i~------gl-~~~~~~ 218 (219)
T PRK10691 199 ----------------LQSGDELTVT--FN------GH-SLTTRV 218 (219)
T ss_pred ----------------CCCCCEEEEE--Ee------CE-EEEEEe
Confidence 5777777777 34 77 777776
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=1.1e-43 Score=355.36 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=177.7
Q ss_pred EeCCcccCCcceEEe-c---HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCC
Q 019941 32 MLLPMEIGDYTDFFS-S---MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPF 107 (333)
Q Consensus 32 ll~Pv~~~~~~~~~~-~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~ 107 (333)
+++|+.++ .+++| + ..|++|++.. .| ..|++|+|+++++++++++|.+|..
T Consensus 215 ~~~p~~~~--~ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~K~~~s~~g~~~~i~~P~~------------ 269 (429)
T PRK15203 215 FPTPPHPH--GTLFALGLNYADHASELEFK--------PP---EEPLVFLKAPNTLTGDNQTSVRPNN------------ 269 (429)
T ss_pred cccCCCCC--CeEEEEcCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCCEECCCC------------
Confidence 66777764 45666 5 4577776531 23 5799999999999999999999986
Q ss_pred CCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCccccccc
Q 019941 108 GPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDA 185 (333)
Q Consensus 108 ~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~de 185 (333)
+..+|||+|||+||||+ +++++++||++||+||+++||+|+||+|.... .+|+++|+||++ +|||+++.|+
T Consensus 270 --~~~ld~E~ELavVigk~---~~~v~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~~plGp~~v~~d~ 342 (429)
T PRK15203 270 --IEYMHYEAELVVVIGKQ---ARKVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPILSTIVPKEA 342 (429)
T ss_pred --CCceEEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCCcCCCCCEeChhh
Confidence 67899999999999999 89999999999999999999999999996543 468999999995 9999999887
Q ss_pred cCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEc
Q 019941 186 LEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGT 265 (333)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~T 265 (333)
+.+ +.++.++++| ||+++|++++++|+|++.++|+|+ |++++|+|||+|+|
T Consensus 343 ~~d--------------------~~~l~i~l~v--------NG~~vq~g~t~~m~~~v~~li~~l-s~~~tL~aGDvI~T 393 (429)
T PRK15203 343 IPD--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIAT 393 (429)
T ss_pred cCC--------------------ccceEEEEEE--------CCEEEEeeCHHHhccCHHHHHHHH-hcCCCcCCCCEEEe
Confidence 643 3568888888 999999999999999999999999 79999999999999
Q ss_pred CCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeCC
Q 019941 266 GTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 332 (333)
Q Consensus 266 GTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~~ 332 (333)
|||.|++ +|++||+|+++ |+ |+|+++|+|+.+.
T Consensus 394 GTp~g~~--------------------------~l~pGD~v~~~--i~------glG~l~n~v~~~~ 426 (429)
T PRK15203 394 GTPKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSEE 426 (429)
T ss_pred CCCCCCe--------------------------ECCCCCEEEEE--Ec------CceEEEEEEEecC
Confidence 9999864 36899999998 55 8999999998653
No 10
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-42 Score=347.79 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=169.6
Q ss_pred ceEEe----cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeE
Q 019941 42 TDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL 117 (333)
Q Consensus 42 ~~~~~----~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ 117 (333)
.+++| |.+|+++++. .| +.|++|+|++++++++|.+|.+|.+ +..+|||+
T Consensus 22 ~kIi~vg~Ny~~ha~e~~~---------~p---~~P~~f~K~~~sl~~~g~~I~~p~~--------------~~~l~~E~ 75 (500)
T PRK12764 22 GKVIAVHLNYPSRAAQRGR---------TP---AQPSYFLKPSSSLALSGGTVERPAG--------------TELLAFEG 75 (500)
T ss_pred CcEEEECCCCHHHHHHhCC---------CC---CCCEEEEeccceEeCCCCeEECCCC--------------CCceeEEE
Confidence 35555 4567777642 23 5789999999999999999999976 56899999
Q ss_pred EEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCccccccccCCccCCCCC
Q 019941 118 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPK 195 (333)
Q Consensus 118 ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~ 195 (333)
||++||||+ +++++++||++||+||+++||+|+||+|..++ ..|+++|+||++ +|||++++++++
T Consensus 76 ELavVIgr~---~~~v~~eea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~plGp~iv~~~~~d-------- 142 (500)
T PRK12764 76 EIALVIGRP---ARRVSPEDAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTPIGPALISARGVD-------- 142 (500)
T ss_pred EEEEEECCc---CCCCCHHHHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEecCCCccCccccC--------
Confidence 999999999 89999999999999999999999999998654 257899999996 999999988874
Q ss_pred CCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCC
Q 019941 196 QDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPES 275 (333)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~ 275 (333)
+.+++++++| ||+++|++++++|+|++.+||+|+ |+++||+|||||+||||.|++
T Consensus 143 -------------~~~l~i~~~v--------NGe~~Q~g~t~dmi~~v~~LI~~l-S~~~tL~pGDvIlTGTp~g~~--- 197 (500)
T PRK12764 143 -------------PAQLRVRTWV--------NGELVQDDTTEDLLFPFAQLVADL-SQLLTLEEGDVILTGTPAGSS--- 197 (500)
T ss_pred -------------ccceEEEEEE--------CCEEEEeccHHHhcCCHHHHHHHH-hcCCCcCCCCEEEeCCCCCCe---
Confidence 2568888888 999999999999999999999999 799999999999999999864
Q ss_pred CCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEc--CCCceeeeeceeeeEeeCC
Q 019941 276 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCK--GNGYTVGFGTCSGKIVPST 332 (333)
Q Consensus 276 ~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~--~~~~~~g~G~~~~~vv~~~ 332 (333)
+|++||+|+++ |+ .+|... ||+|+|+|+...
T Consensus 198 -----------------------~l~pGD~v~~~--i~gi~~~~~~-~G~L~n~v~~~~ 230 (500)
T PRK12764 198 -----------------------VAAPGDVVEVE--VDAPADGAPS-TGRLVTRVVEGT 230 (500)
T ss_pred -----------------------ecCCCCEEEEE--EcCCccCCCC-cceEEEEEEeCC
Confidence 45788888887 44 112221 499999998654
No 11
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=2.2e-40 Score=301.98 Aligned_cols=194 Identities=22% Similarity=0.243 Sum_probs=161.9
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCC
Q 019941 47 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 126 (333)
Q Consensus 47 ~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~ 126 (333)
|..|+++++..+........| +.|++|+|++++++++|++|.+|.. ...++||+|||+||||+
T Consensus 10 y~~h~~~~~~~~~~~~~~~~p---~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELa~vigr~ 72 (205)
T TIGR02305 10 YREQLDRLQEAFQQAPYKAPP---KTPVLYIKPRNTHNGCGQPIPLPAG--------------VEKLRSGATLALVVGRT 72 (205)
T ss_pred HHHHHHHhcccccccccCCCC---CCCEEEEcCcceEeCCCCeEECCCC--------------CCCccEEEEEEEEECCC
Confidence 456888887432111111123 5799999999999999999999875 56899999999999999
Q ss_pred CCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCccc
Q 019941 127 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 204 (333)
Q Consensus 127 ~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~ 204 (333)
++++++++|++||+||+++||+|+|+.+... .|.++|+||++ +||| ++.+++.+
T Consensus 73 ---~~~~~~~~a~~~v~g~~~~~dit~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~~~~d---------------- 128 (205)
T TIGR02305 73 ---ACRVREEEALDYVAGYALVNDVSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLSAIGN---------------- 128 (205)
T ss_pred ---CCCCCHHHHHHhhheeEEeeeeehhhhhccC----cchhhcccCCccccCCc-ccHHHcCC----------------
Confidence 7889999999999999999999999976532 57899999995 9999 67666633
Q ss_pred cccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEe
Q 019941 205 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 284 (333)
Q Consensus 205 ~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~ 284 (333)
+.++.+++++ ||+++|++++++|+|++.++++|+ |++++|+|||||+||||.|+.
T Consensus 129 ----~~~~~~~l~v--------ng~~~~~g~~~~~~~~~~~li~~l-s~~~~L~aGdvI~TGT~~g~~------------ 183 (205)
T TIGR02305 129 ----PDELTIYTYI--------NGKPAQSNNTSNLVRSAAQLISEL-SEFMTLNPGDVLLLGTPEARV------------ 183 (205)
T ss_pred ----ccccEEEEEE--------CCEEEEeeCHHHhCcCHHHHHHHH-hCCCCcCCCCEEEeCCCCCCe------------
Confidence 3567888888 999999999999999999999999 689999999999999998753
Q ss_pred cCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeE
Q 019941 285 NGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 328 (333)
Q Consensus 285 ~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v 328 (333)
+|++||+|+++ |+ |+|+++|+|
T Consensus 184 --------------~l~~Gd~v~~~--i~------glG~l~n~v 205 (205)
T TIGR02305 184 --------------EVGPGDRVRVE--AE------GLGELENPV 205 (205)
T ss_pred --------------ecCCCCEEEEE--Ec------CceeEEEeC
Confidence 46888888888 45 888888876
No 12
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=6.4e-41 Score=306.84 Aligned_cols=204 Identities=31% Similarity=0.391 Sum_probs=172.5
Q ss_pred cHHHHHHhccccCCCCCCCCCC--CCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEc
Q 019941 47 SMHHAKNCGTIFRGPANAVPAN--WFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG 124 (333)
Q Consensus 47 ~~~H~~~~~~~~~~~~~~~~p~--~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIG 124 (333)
+.+|+++++... .. .|. +...|++|.|++++++++|++|.+|.. +..++||+||+++||
T Consensus 9 ~~~~~~~~~~~~--~~---~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~--------------~~~~~~E~Ela~vig 69 (218)
T PF01557_consen 9 YTSHAEEAGAGD--VD---EPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRG--------------SRRLDYEAELAFVIG 69 (218)
T ss_dssp BHHHHHHTTTTC--SS---TTSEECECSGEEEEEEGGGEEETTSEEEECTT--------------SSSEEEEEEEEEEES
T ss_pred hHHHHHHhCcCC--CC---CCccccccCCeEEecCCceeecCCCceecCcc--------------ccccCcceEEEEEEe
Confidence 678999987531 11 221 124688999999999999999999986 678999999999999
Q ss_pred CCCCCCCCC-CHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCC
Q 019941 125 PGNELGKPI-DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPL 201 (333)
Q Consensus 125 k~~~~g~~v-~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~ 201 (333)
|+ ++++ ++++|++||+||+++||||+|++|.+...+++|+.+|+++++ +|||+++++++.+
T Consensus 70 ~~---~~~~~~~~ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~------------- 133 (218)
T PF01557_consen 70 RP---LRNVYTPEEALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPD------------- 133 (218)
T ss_dssp S----BSSTH-HHHHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSG-------------
T ss_pred cC---CCCCCCHHHHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeecccccccccccC-------------
Confidence 98 7888 999999999999999999999999887644678889999995 9999999988864
Q ss_pred ccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEE
Q 019941 202 PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLE 281 (333)
Q Consensus 202 ~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e 281 (333)
+.++++++++ ||+++|++++++|+|++.++|+|+ |++++|++||+|+||||+|++.
T Consensus 134 -------~~~~~~~l~v--------nG~~~~~~~~~~~~~~~~~ll~~l-s~~~~L~aGdvI~TGt~~G~~~-------- 189 (218)
T PF01557_consen 134 -------LRDLRLRLRV--------NGEVVQSGSTSDMLGDPAELLAWL-SRGLTLRAGDVILTGTPTGVGA-------- 189 (218)
T ss_dssp -------TTSEEEEEEE--------TTEEEEEEEGGGBSSSHHHHHHHH-HTTS-B-TTEEEEEEESSTSEG--------
T ss_pred -------cceEEEEEEE--------CCEEEEeccchhHHhhHHHHHHHH-hCCCCCCcceEEEcCCcCCCCc--------
Confidence 2568888888 999999999999999999999998 7999999999999999998742
Q ss_pred EEecCccceecCCCCCCCCCCCCEEEEEEEE-cCCCceeeeeceeeeEe
Q 019941 282 LTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC-KGNGYTVGFGTCSGKIV 329 (333)
Q Consensus 282 ~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~-~~~~~~~g~G~~~~~vv 329 (333)
..++.+|++||+|+++ + . |||+++|+|+
T Consensus 190 ------------~~~~~~l~~Gd~v~~~--~~~------glG~l~~~v~ 218 (218)
T PF01557_consen 190 ------------RPPPVPLQPGDRVEAE--IDE------GLGSLENTVA 218 (218)
T ss_dssp ------------SSCCEEEBTT-EEEEE--EET------TTEEEEEEEE
T ss_pred ------------ccccccCCCCcEEEEE--EEC------CEeEEEEEEC
Confidence 2467899999999999 6 5 9999999985
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.91 E-value=2e-23 Score=196.44 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=122.8
Q ss_pred CCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHh---hceeEEEEEeecchhh
Q 019941 79 RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA---DHIFGVMLMNDWSARD 155 (333)
Q Consensus 79 ~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~---~~I~Gytl~ND~SaRd 155 (333)
..+.+..+|.++.++.. ..+++|+||+|+|||+++ +++++++|++ ++|+++.-.||.+.||
T Consensus 79 ~~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~El~D~r~~~ 142 (255)
T TIGR03220 79 LDGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFEIVDSRIRD 142 (255)
T ss_pred eccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEEEccccccc
Confidence 34556667888877653 379999999999999976 5789999766 5677777778999998
Q ss_pred hhhhhhcCCCCccccccCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEE
Q 019941 156 IQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVT 232 (333)
Q Consensus 156 ~q~~~~~~~~~~~aK~~dt~---lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q 232 (333)
+|.. ..+..+|+.... +|+.+..++.+ +...+.+++++ ||+++|
T Consensus 143 ~~~~----~~~~~Ad~~~~~~~V~g~~~~~~~~~---------------------~l~~~~~~l~v--------nG~~~~ 189 (255)
T TIGR03220 143 WKIK----IQDTVADNASCGVFVLGDTRVDPRKL---------------------DLALCGMVLEK--------NGEIVS 189 (255)
T ss_pred CCCC----ccceeeecCCcceEEECCCcCCcccc---------------------ChhhCceEEEE--------CCEEEe
Confidence 8642 256678874321 33333222111 12445566777 999999
Q ss_pred ecchhhhccCHHHHHHHHHh----cCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCcccee
Q 019941 233 RSNFKYLYWTLTQQLAHHTI----NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 291 (333)
Q Consensus 233 ~~~t~~mi~~~~~lIa~~~S----~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~ 291 (333)
++++++|++++.++|+|++. ++++|+|||+|+||||.|+.++++||.++++++|+|.++
T Consensus 190 ~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd~v~~~~~glG~v~ 252 (255)
T TIGR03220 190 TGAGAAALGSPVNAVAWLANTLGRLGIPLKAGEVILSGSLAALVPVKAGDNLRVSIGGIGSCS 252 (255)
T ss_pred ecchhhccCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCCeeCCCCCEEEEEEcCCceEE
Confidence 99999999999999999941 388999999999999999888877777777777777654
No 14
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.88 E-value=5.4e-22 Score=187.39 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=131.7
Q ss_pred CceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhh
Q 019941 80 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAW 159 (333)
Q Consensus 80 ~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~ 159 (333)
.+.+..+|..+..+.. ....+|+||+|++||+++ +.+++++|+.++|.++..+.++..++++.|
T Consensus 84 ~~~~~~~g~~~~~~~~---------------~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~ 147 (262)
T PRK11342 84 ADMCYGDNEIIPFSRV---------------LQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDW 147 (262)
T ss_pred chhhcCCCCeeccccc---------------CCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCC
Confidence 3556667776655432 357889999999999986 567899999999999999999999999877
Q ss_pred hhcCCCCccccccCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecch
Q 019941 160 EYVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 236 (333)
Q Consensus 160 ~~~~~~~~~aK~~dt~---lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t 236 (333)
.. ......+.+.... +|+.+..+++++ +.++.+++++ ||+++|++++
T Consensus 148 ~~-~~~~~iAD~~~~~~~VlG~~~~~~~~~d---------------------~~~~~~~l~v--------ng~~~q~g~~ 197 (262)
T PRK11342 148 SI-QFVDTVADNASCGVYVIGGPAQRPAGLD---------------------LKNCAMKMTR--------NNEEVSSGRG 197 (262)
T ss_pred CC-chhheeecccccceEEECCCcCCcccCC---------------------hhhCEEEEEE--------CCEEEEEEcH
Confidence 43 2223445554442 777665554442 3567888887 9999999999
Q ss_pred hhhccCHHHHHHHHH----hcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEE
Q 019941 237 KYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC 312 (333)
Q Consensus 237 ~~mi~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~ 312 (333)
++|++++.++++|++ +++++|++||||+||||.++ .++++||+|+++ +
T Consensus 198 ~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~--------------------------~~l~~Gd~v~~~--i 249 (262)
T PRK11342 198 SECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPM--------------------------VAVNAGDRFEAH--I 249 (262)
T ss_pred HHhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCC--------------------------eeCCCCCEEEEE--E
Confidence 999999999999884 44579999999999999765 456777777777 4
Q ss_pred cCCCceeeeeceeeeEeeC
Q 019941 313 KGNGYTVGFGTCSGKIVPS 331 (333)
Q Consensus 313 ~~~~~~~g~G~~~~~vv~~ 331 (333)
+ |+|++++++..+
T Consensus 250 ~------glG~v~~~~~~~ 262 (262)
T PRK11342 250 E------GIGSVAATFSSA 262 (262)
T ss_pred C------CCceEEEEEecC
Confidence 4 788888877543
No 15
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.80 E-value=1.2e-18 Score=165.22 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=129.5
Q ss_pred CCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhh
Q 019941 79 RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA 158 (333)
Q Consensus 79 ~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~ 158 (333)
..+.+..+|..+.... -...-+|+||+|++||+++ +...+.+|++++|.+|..+.|+.+++++.
T Consensus 84 ~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEi~dsr~~~ 147 (267)
T TIGR02312 84 LDDMFFEDGSTIPADR---------------FIQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALEIIDARIER 147 (267)
T ss_pred cCccccCCCCeecccc---------------ccccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEEEeeccccc
Confidence 4456666676665432 2357899999999999986 57899999999999999999999999998
Q ss_pred hhhcC-----CCCccccccCC--c-cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeE
Q 019941 159 WEYVP-----LGPFLGKSFGT--T-LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCV 230 (333)
Q Consensus 159 ~~~~~-----~~~~~aK~~dt--~-lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~ 230 (333)
|.... .....+.+..+ . +|+.++.+++++ ...+.+++++ ||++
T Consensus 148 ~~~~~~~~~~~~d~iADn~~~~~~v~G~~~~~~~~~d---------------------l~~~~~~l~~--------nG~~ 198 (267)
T TIGR02312 148 VDPETGATRKVFDTISDNAANAGIVLGGRPVRPDALD---------------------LRWVGAILYR--------NGVV 198 (267)
T ss_pred cccccCCccccccEecCCccceEEEECCCCCCccccC---------------------hhhcccEEEE--------CCEE
Confidence 75321 11123443333 1 787766555443 2456677777 9999
Q ss_pred EEecchhhhccCHHHHHHHHH----hcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCcccee
Q 019941 231 VTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 291 (333)
Q Consensus 231 ~q~~~t~~mi~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~ 291 (333)
+++|++++|+.++.+.++|++ .++.+|++||+|+|||+.++.++.+|+.++++++|+|.++
T Consensus 199 ~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~~~~~~~~glG~v~ 263 (267)
T TIGR02312 199 EETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGDTFHADYGPLGTIS 263 (267)
T ss_pred EEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCCEEEEEEcCCceEE
Confidence 999999999999999999984 5667999999999999999988888888888888877654
No 16
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.61 E-value=1.8e-14 Score=136.45 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=121.6
Q ss_pred CCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc---cCCccccccccC
Q 019941 111 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALE 187 (333)
Q Consensus 111 ~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~---lGP~ivt~del~ 187 (333)
...-.|+|++|+++++++ +...+.+|+.++|..+..+.++-...+..|.. .+....+.|..+. +||+...++.++
T Consensus 104 ~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEivdsR~~~~~~-~~~~~iADn~~~~~~vlG~~~~~~~~~d 181 (263)
T TIGR03218 104 IHPKVEAEIAFVTKAPLK-GPGCHIGDVLAATDFVMPAVEVIDSRYRDFKF-DLKSVIADNTSSARFVTGGRAANVEDLD 181 (263)
T ss_pred CcceeeeEEEEEECCCCC-CCCCCHHHHHHhhcEEEeeEEeccCcccCCCC-ChhheeeeccccceEEECCCCCCccccC
Confidence 357899999999999986 67899999999999999999999888886642 2234566666542 788776554432
Q ss_pred CccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHH----hcCcccCCCCEE
Q 019941 188 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLL 263 (333)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~----S~~~tL~pGDvI 263 (333)
..++.+++++ ||++++++..++.+.++...++|++ .++..|++||+|
T Consensus 182 ---------------------l~~~~~~l~~--------~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV 232 (263)
T TIGR03218 182 ---------------------LRTLGVVMEK--------NGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFI 232 (263)
T ss_pred ---------------------HhhCcEEEEE--------CCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEE
Confidence 3556777776 9999999999999999888888874 778899999999
Q ss_pred EcCCCCCCccCCCCcEEEEEecCcccee
Q 019941 264 GTGTISGPEPESLGCLLELTWNGQKPLS 291 (333)
Q Consensus 264 ~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~ 291 (333)
+|||..++.++.+|+.+.++++|+|.++
T Consensus 233 ~tGs~t~~~~v~~G~~~~~~~~glG~v~ 260 (263)
T TIGR03218 233 MSGGITEAVAVAPGDSVTVRYQGLGSVS 260 (263)
T ss_pred ECCcCcCceecCCCCEEEEEECCCceEE
Confidence 9999999988888888888888887655
No 17
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.60 E-value=1e-14 Score=138.25 Aligned_cols=185 Identities=22% Similarity=0.171 Sum_probs=136.8
Q ss_pred ceeeec-CCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeec
Q 019941 73 PIAYHG-RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 151 (333)
Q Consensus 73 P~~f~k-~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~ 151 (333)
+.+|+| .+.+-+|+|+.|-+-+. +.+-..|.|+++++... |+ |.|||++|||
T Consensus 169 aEIFtKaqpmssVG~Ga~Igv~~~--------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDV 221 (379)
T COG3970 169 AEIFTKAQPMSSVGHGAQIGVRPD--------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDV 221 (379)
T ss_pred hhheecCCccccccccceeeeccc--------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCcc
Confidence 455666 55777899999966443 78999999999999877 75 9999999999
Q ss_pred chhhhhhhhhcCCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCe
Q 019941 152 SARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 229 (333)
Q Consensus 152 SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe 229 (333)
++||+..+.. +--.++|....+ +||+|++.||.-... |.+...++|.| .|+ +|-
T Consensus 222 nlRD~Egrsa--LlL~kaKdnnasCaiGPfIrlfDe~f~~~-----------------dv~~a~vtLkv--~ge---dgf 277 (379)
T COG3970 222 NLRDFEGRSA--LLLSKAKDNNASCAIGPFIRLFDETFTID-----------------DVKSAEVTLKV--TGE---DGF 277 (379)
T ss_pred cccccccccc--hhcccccccCccccccceEEeecCCCChh-----------------hhhhceEEEEE--Ecc---Cce
Confidence 9999987753 333467776664 999999988763221 12334577776 443 443
Q ss_pred EE-EecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEE
Q 019941 230 VV-TRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 308 (333)
Q Consensus 230 ~~-q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~ 308 (333)
.. ..+|++.|-.++.+++..+.-+.....-|-++++||.--++.-+.+ .......+.||.|||
T Consensus 278 ~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTmfaP~kDr~~----------------~g~gfth~~gD~VeI 341 (379)
T COG3970 278 FLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTMFAPGKDRGL----------------KGLGFTHEVGDIVEI 341 (379)
T ss_pred EEeccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeeeeccccccCC----------------CCCCcccCCCCEEEE
Confidence 33 5667999999998887776577888999999999998655432111 122466799999999
Q ss_pred EEEEcCCCceeeeeceeeeEeeCC
Q 019941 309 TGFCKGNGYTVGFGTCSGKIVPST 332 (333)
Q Consensus 309 ~~~~~~~~~~~g~G~~~~~vv~~~ 332 (333)
+ +. -||+|.|+|...+
T Consensus 342 S--tp------~lG~Lin~V~~~d 357 (379)
T COG3970 342 S--TP------KLGTLINPVTTSD 357 (379)
T ss_pred e--cc------ccceeeeeeeccC
Confidence 9 44 6999999998654
No 18
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.54 E-value=3.2e-14 Score=132.67 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=134.0
Q ss_pred CceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhh-h
Q 019941 80 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-A 158 (333)
Q Consensus 80 ~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q-~ 158 (333)
.+.....|.+|+.+.+ -...+|+||+++++|+++ +.++|..|+++||..+..+.++-...++ .
T Consensus 85 d~m~f~eg~~ip~~r~---------------~~prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d 148 (264)
T COG3971 85 DDMAFNEGADIPFSRF---------------IQPRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQD 148 (264)
T ss_pred HhHHhhcCCCCCcccc---------------cceeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhC
Confidence 3455566777665543 245999999999999998 7899999999999999999999766666 4
Q ss_pred hhhcCCCCccccccCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecc
Q 019941 159 WEYVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSN 235 (333)
Q Consensus 159 ~~~~~~~~~~aK~~dt~---lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~ 235 (333)
+.. ++..+.+.|.... +||-.+.+++++- +.+..++.. ||++++.+.
T Consensus 149 ~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld~---------------------~~~~~~l~r--------ng~~~e~g~ 198 (264)
T COG3971 149 WQV-KFPDTIADNAANAGFVIGGRAVKPDDLDL---------------------RNVGATLYR--------NGVEEETGV 198 (264)
T ss_pred CCC-CcceEEecccccCceEECCCCCCchhhhh---------------------hhccceeee--------cCEEEEeee
Confidence 332 2334566665553 9987777777652 446667776 999999999
Q ss_pred hhhhccCHHHHHHHHH----hcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec
Q 019941 236 FKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL 292 (333)
Q Consensus 236 t~~mi~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~ 292 (333)
.+..+.++..-++|++ +.+.+|++||||+||...+..+.++||.+++.+.|+|..++
T Consensus 199 ~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~gd~~h~~~~~lG~v~~ 259 (264)
T COG3971 199 GAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPGDTFHADFGGLGAVSC 259 (264)
T ss_pred chhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCCCEEEEEecCcCceEE
Confidence 9999999999999985 78899999999999999999999999999999998887664
No 19
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=98.32 E-value=1.1e-05 Score=73.16 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=118.4
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCC
Q 019941 48 MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGN 127 (333)
Q Consensus 48 ~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~ 127 (333)
..|+.|+... |.. +|. ..|.+|--.+.-+... ..|.... ..---|+|.+++..+
T Consensus 12 ~~HI~EL~~l--GVp---~Ps--~vP~~Y~v~~~lltq~-~~i~v~g----------------~~tSGE~E~vli~~~-- 65 (194)
T PF11010_consen 12 EHHIEELAAL--GVP---PPS--SVPLFYRVAPYLLTQA-DEIEVLG----------------EDTSGEAEPVLIRHG-- 65 (194)
T ss_pred HHHHHHHHHh--CCC---CCC--CCCEEEEechhhCccc-CeEEecc----------------CCCCceEEEEEEEEC--
Confidence 3599888653 322 332 6799998877766543 4444432 234458898766653
Q ss_pred CCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCC-ccCCccccccccCCccCCCCCCCCCCCccccc
Q 019941 128 ELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT-TLSPWIVTLDALEPFACDSPKQDPQPLPYLAE 206 (333)
Q Consensus 128 ~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt-~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~ 206 (333)
++ .-.+++.|=|+|++..... ..+|.... ++++-+-..+++.+.|
T Consensus 66 --g~-----------~~v~vgSDHTDR~lE~~sV-----a~SKq~c~Kpva~~~W~~~dV~dhW---------------- 111 (194)
T PF11010_consen 66 --GE-----------LYVGVGSDHTDRKLEAYSV-----AVSKQACPKPVAREAWRLDDVADHW---------------- 111 (194)
T ss_pred --Ce-----------EEEEecCCCccchhhhcCc-----hhhhhcCCccchhhcCcHHHHHhhh----------------
Confidence 32 2478999999999986543 35676554 6787655556776654
Q ss_pred cCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEec
Q 019941 207 KISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWN 285 (333)
Q Consensus 207 ~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~ 285 (333)
+.+.|+.++..+| .+.+.|+|..+.|+ ++.++++-+......+.+|-++++||.+-.+.+++|+.+++++.
T Consensus 112 ---D~l~Lrsw~~~dg----~~~lYQeGtla~ll-~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~a~~f~~eL~ 182 (194)
T PF11010_consen 112 ---DELELRSWITEDG----ERVLYQEGTLAALL-PPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRPADRFEMELE 182 (194)
T ss_pred ---hheeEEEEEeeCC----CEEEEeecchhhcC-CHHHHHHhhhccCCCCCCCEEEEEeccccccCccccceEEEEEE
Confidence 5688888876543 45677999988765 78999998732567899999999999988887788888877664
No 20
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=6.2e-05 Score=70.83 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=87.9
Q ss_pred Cceee-ecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEE--EEEcCCCCCCCCCCHHHHhhceeEEEEE
Q 019941 72 LPIAY-HGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADHIFGVMLM 148 (333)
Q Consensus 72 ~P~~f-~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELa--vVIGk~~~~g~~v~~eeA~~~I~Gytl~ 148 (333)
+|..| .+.-+.++.+|.+++.|++ ...---|.|++ .+||.+ |. -|-.||+++
T Consensus 140 QPEWFyKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~--------p~RlGfal~ 194 (333)
T COG3802 140 QPEWFYKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GT--------PYRLGFALA 194 (333)
T ss_pred CcceEEeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cc--------eeEEeeeec
Confidence 44444 4566778889999988875 34455677876 567876 53 367899999
Q ss_pred eecchhhhhhhhhcCCCCccccccCCccCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCC
Q 019941 149 NDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS 228 (333)
Q Consensus 149 ND~SaRd~q~~~~~~~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NG 228 (333)
|++|+-=..+.++ +-...+|=...++||-+..-+ +. ..++=.-++. ++|
T Consensus 195 NEfSDHvtEr~NY--L~LAHSKLR~as~GPEl~vG~-lP----------------------~~vrG~SRI~------Rdg 243 (333)
T COG3802 195 NEFSDHVTERVNY--LYLAHSKLRNASFGPELLVGA-LP----------------------EDVRGVSRIL------RDG 243 (333)
T ss_pred chhhhhhhhccce--EEeehhhhhccccCcceeecc-Cc----------------------hhhcCceeee------cCC
Confidence 9999886666554 212356755567999876532 21 2233233331 388
Q ss_pred eEEEec----chhhhccCHHHHHHHHHhcCcccCCCCEE
Q 019941 229 CVVTRS----NFKYLYWTLTQQLAHHTINGCNLRSGDLL 263 (333)
Q Consensus 229 e~~q~~----~t~~mi~~~~~lIa~~~S~~~tL~pGDvI 263 (333)
++.-+- --++|-++++.|=-|...-.+-.+||||=
T Consensus 244 ~viwek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvH 282 (333)
T COG3802 244 EVIWEKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVH 282 (333)
T ss_pred EEEEecccccCccchhhhhhhhhhhhhhhhhhcCCCceE
Confidence 877432 24789999998865554334567899973
No 21
>PRK10691 hypothetical protein; Provisional
Probab=82.01 E-value=1.7 Score=40.25 Aligned_cols=10 Identities=40% Similarity=0.338 Sum_probs=8.5
Q ss_pred CCCCCCCEEE
Q 019941 298 KFLEDGDEVT 307 (333)
Q Consensus 298 ~~L~~GD~V~ 307 (333)
..|++||+|-
T Consensus 180 ~tL~aGDvI~ 189 (219)
T PRK10691 180 FTLRAGDVVL 189 (219)
T ss_pred CccCCCCEEE
Confidence 4899999985
No 22
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=63.40 E-value=31 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=14.2
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 019941 227 DSCVVTRSNFKYLYWTLTQQLAHH 250 (333)
Q Consensus 227 NGe~~q~~~t~~mi~~~~~lIa~~ 250 (333)
||+.++-. .+ ++.++++++
T Consensus 6 Ng~~~~~~---~~--tl~~Ll~~l 24 (65)
T PRK06488 6 NGETLQTE---AT--TLALLLAEL 24 (65)
T ss_pred CCeEEEcC---cC--cHHHHHHHc
Confidence 99998862 22 788888775
No 23
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=58.15 E-value=11 Score=35.54 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeecee
Q 019941 274 ESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCS 325 (333)
Q Consensus 274 ~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~ 325 (333)
+++||.+-. |++ ....+++|||+|+++ |+ |+|+++
T Consensus 218 L~aGdiV~T-----Gt~----~g~~~v~~Gd~v~~~--~~------glG~v~ 252 (255)
T TIGR03220 218 LKAGEVILS-----GSL----AALVPVKAGDNLRVS--IG------GIGSCS 252 (255)
T ss_pred CCCCCEEEC-----CCC----CCCeeCCCCCEEEEE--Ec------CCceEE
Confidence 577887654 221 134579999999999 56 899876
No 24
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=55.83 E-value=33 Score=27.38 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCCCEEEcCCCCCCccCCCCcEEEEEecCcccee-----c---CCCCCCCCCCCCEEEEEE
Q 019941 258 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS-----L---DGFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 258 ~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~-----~---~~~~~~~L~~GD~V~~~~ 310 (333)
+.||+|. |... -..++...+.|.+--... + .++...+|+.||.|-.++
T Consensus 5 ~~gD~VI-G~V~----~~~~~~~~VdI~s~~~a~L~~~~f~gatk~~rp~L~~GDlV~ArV 60 (86)
T cd05790 5 AKGDHVI-GIVV----AKAGDFFKVDIGGSEPASLSYLAFEGATKRNRPNLNVGDLVYARV 60 (86)
T ss_pred CCCCEEE-EEEE----EEcCCeEEEEcCCCcceEechHHcccccccccccCCCCCEEEEEE
Confidence 4667663 2222 234555666554422211 1 234578899999987774
No 25
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=45.43 E-value=22 Score=28.57 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=14.4
Q ss_pred CCCCCCCCCCEEEEEEE
Q 019941 295 FTRKFLEDGDEVTFTGF 311 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~~~ 311 (333)
....|+.+||.|.||.+
T Consensus 42 ~~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 42 KHRIRILAGDRVTLELS 58 (87)
T ss_pred eeeEEecCCCEEEEEEC
Confidence 45789999999999964
No 26
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=43.50 E-value=7.9 Score=27.49 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.6
Q ss_pred ccCCccccCCcEEeCC
Q 019941 20 RQKSLVPMGKVEMLLP 35 (333)
Q Consensus 20 ~~~~~~~~~~v~ll~P 35 (333)
.+|..+|+++|+||+|
T Consensus 35 ~tg~~~~L~~VrLLaP 50 (50)
T PF10370_consen 35 PTGETLPLAEVRLLAP 50 (50)
T ss_dssp EEEEEEEGGGSEEE-S
T ss_pred cCCCEEechhEEEcCC
Confidence 5788999999999998
No 27
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=42.24 E-value=34 Score=26.19 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=14.6
Q ss_pred CCCCCCCCCCEEEEEEE
Q 019941 295 FTRKFLEDGDEVTFTGF 311 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~~~ 311 (333)
....|+.+||.|.|+.+
T Consensus 40 ~~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 40 MHYIRILPGDKVKVELS 56 (68)
T ss_pred hccEEECCCCEEEEEEC
Confidence 45889999999999964
No 28
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=39.16 E-value=50 Score=24.68 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCEEEEE
Q 019941 294 GFTRKFLEDGDEVTFT 309 (333)
Q Consensus 294 ~~~~~~L~~GD~V~~~ 309 (333)
......|++||.|++=
T Consensus 46 ~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 46 DHTDTSVFDGDQIEIV 61 (67)
T ss_pred HcCceecCCCCEEEEE
Confidence 3456789999999975
No 29
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=39.08 E-value=52 Score=25.96 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEEEEE
Q 019941 296 TRKFLEDGDEVTFTGF 311 (333)
Q Consensus 296 ~~~~L~~GD~V~~~~~ 311 (333)
...|++.||.|.|+.+
T Consensus 40 k~iwI~~GD~VlVe~~ 55 (83)
T smart00652 40 KKVWIRRGDIVLVDPW 55 (83)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4799999999999953
No 30
>PRK07440 hypothetical protein; Provisional
Probab=38.99 E-value=61 Score=24.48 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=12.4
Q ss_pred CCCCCCCCCCEEEEE
Q 019941 295 FTRKFLEDGDEVTFT 309 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~ 309 (333)
.....|++||+|++=
T Consensus 50 w~~~~L~~gD~IEIv 64 (70)
T PRK07440 50 WEQTQVQPGDRLEIV 64 (70)
T ss_pred cCceecCCCCEEEEE
Confidence 456789999999974
No 31
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=36.64 E-value=42 Score=26.27 Aligned_cols=17 Identities=24% Similarity=0.006 Sum_probs=14.4
Q ss_pred CCCCCCCCCCEEEEEEE
Q 019941 295 FTRKFLEDGDEVTFTGF 311 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~~~ 311 (333)
....|+.|||+|.++.|
T Consensus 42 ~~~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 42 KNRIRILPGDVVLVELS 58 (75)
T ss_pred heeEEeCCCCEEEEEec
Confidence 44789999999999964
No 32
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=35.29 E-value=76 Score=25.09 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=12.5
Q ss_pred CCCCCCCCCCEEEEE
Q 019941 295 FTRKFLEDGDEVTFT 309 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~ 309 (333)
.....|++||+|++=
T Consensus 64 w~~t~L~egD~IEIv 78 (84)
T PRK06083 64 WQSTVLSSGDAISLF 78 (84)
T ss_pred cCcccCCCCCEEEEE
Confidence 457789999999975
No 33
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=34.79 E-value=1.2e+02 Score=27.71 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=36.8
Q ss_pred cCCCCEEEcCCC--CCCccCCCCcEEEEEecCccceec--------CC-CCCCCCCCCCEEEEEE
Q 019941 257 LRSGDLLGTGTI--SGPEPESLGCLLELTWNGQKPLSL--------DG-FTRKFLEDGDEVTFTG 310 (333)
Q Consensus 257 L~pGDvI~TGTp--~Gv~~~~~Gd~~e~~~~g~g~l~~--------~~-~~~~~L~~GD~V~~~~ 310 (333)
..|||+|.+.-. .|-+-...|..+.+...|.-..+. .. ..+..+|+||+|--.+
T Consensus 8 v~PGd~~a~~EE~~~G~gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~~~~~K~GdiV~grV 72 (188)
T COG1096 8 VLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGDIVYGRV 72 (188)
T ss_pred EcCcceeeeeeeeecCCCeEeECCEEEEeecccEEEcccceEEEeccCCCCCCCCCCCCEEEEEE
Confidence 468999988877 455555556667666666544421 33 3488999999997764
No 34
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=32.70 E-value=64 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=30.9
Q ss_pred CccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeee
Q 019941 271 PEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGK 327 (333)
Q Consensus 271 v~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~ 327 (333)
+-.+++||...+++.= ..+.+|++++++.+ ..+|.++|.|.+.+-
T Consensus 54 p~~l~~g~~a~v~l~~--------~~pi~ve~~~Rf~l----R~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 54 PKFLKPGDRAVVELEF--------QKPICVEPFSRFIL----RDGGKTIAVGVVTKV 98 (99)
T ss_dssp -SEB-TTEEEEEEEEE--------EEEEEETTTTEEEE----EETTEEEEEEEEEEE
T ss_pred ccccccccccccceee--------ccceeeecCceEEE----ccCCeEEEEEEEEEe
Confidence 4567889988876642 23678889985554 457789999988763
No 35
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=31.72 E-value=72 Score=30.30 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=37.9
Q ss_pred cCcccCC-CCEEEcCCCCCCc-------------------cCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEE
Q 019941 253 NGCNLRS-GDLLGTGTISGPE-------------------PESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC 312 (333)
Q Consensus 253 ~~~tL~p-GDvI~TGTp~Gv~-------------------~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~ 312 (333)
..++|.- |.++.+|+-+.+- .++.|+.+-. |.+ ....++++||.|+++ +
T Consensus 185 ~~~~l~~~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~t-----Gs~----t~~~~v~~G~~~~~~--~ 253 (263)
T TIGR03218 185 LGVVMEKNGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMS-----GGI----TEAVAVAPGDSVTVR--Y 253 (263)
T ss_pred CcEEEEECCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEEC-----CcC----cCceecCCCCEEEEE--E
Confidence 3455644 6688888865431 3577877653 222 357889999999998 5
Q ss_pred cCCCceeeeecee
Q 019941 313 KGNGYTVGFGTCS 325 (333)
Q Consensus 313 ~~~~~~~g~G~~~ 325 (333)
+ |||+++
T Consensus 254 ~------glG~v~ 260 (263)
T TIGR03218 254 Q------GLGSVS 260 (263)
T ss_pred C------CCceEE
Confidence 5 899875
No 36
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=30.73 E-value=14 Score=36.35 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCeEEEecchhhhccCHHHHHHHH--------H-------hcCcccCCCCEEEcCCC
Q 019941 226 EDSCVVTRSNFKYLYWTLTQQLAHH--------T-------INGCNLRSGDLLGTGTI 268 (333)
Q Consensus 226 ~NGe~~q~~~t~~mi~~~~~lIa~~--------~-------S~~~tL~pGDvI~TGTp 268 (333)
+||++++++.-..-.|+.+-.++-- + ...+.|++||||+.+|=
T Consensus 197 R~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATD 254 (330)
T KOG1379|consen 197 REGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATD 254 (330)
T ss_pred ECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEecc
Confidence 3999999998888888766444321 0 13368999999999996
No 37
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=30.05 E-value=87 Score=24.32 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.8
Q ss_pred CCCCCCCCCEEEEEEE
Q 019941 296 TRKFLEDGDEVTFTGF 311 (333)
Q Consensus 296 ~~~~L~~GD~V~~~~~ 311 (333)
...|+++||.|.|+.+
T Consensus 35 k~iwI~~GD~V~Ve~~ 50 (77)
T cd05793 35 KRVWINEGDIVLVAPW 50 (77)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4799999999999954
No 38
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=29.86 E-value=72 Score=25.53 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.2
Q ss_pred cCcccCCCCEEEcCCCCCC
Q 019941 253 NGCNLRSGDLLGTGTISGP 271 (333)
Q Consensus 253 ~~~tL~pGDvI~TGTp~Gv 271 (333)
+.-||+.||.|.+|+-.|.
T Consensus 23 ~~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred EcCeEecCCEEEECCccce
Confidence 4468999999999998775
No 39
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=29.64 E-value=96 Score=29.05 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=49.1
Q ss_pred hhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec--CCCCCCCCCCCCEEEEE
Q 019941 236 FKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL--DGFTRKFLEDGDEVTFT 309 (333)
Q Consensus 236 t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~--~~~~~~~L~~GD~V~~~ 309 (333)
...++.++++.+-.+ |+ .+|.||..|..--..-.-.++.|+.+.+.+++ +.+++ .+.+-.-=-.||++++.
T Consensus 126 ~~~~~~d~~~vvg~v-sk-r~l~pg~~i~~~~lr~~~lV~rg~~V~~v~~~-ggi~i~~~g~aL~nga~Ge~IrVr 198 (220)
T COG1261 126 PPGYVLDPDEVVGKV-SK-RTLLPGQPILASMLRQAWLVKRGQIVTVVAEG-GGISITAEGKALENGAVGEVIRVR 198 (220)
T ss_pred CCcccCCHHHHhcHH-hh-hccCCCCEecHHHhccceeEecCCEEEEEEeC-CCEEEEEeeeEccCccccceEEEe
Confidence 346778999999987 45 58999999977666666667899998887754 33332 22222222468888887
No 40
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=28.61 E-value=49 Score=33.16 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=51.2
Q ss_pred EecchhhhccCHHHHHHHHHhcC---cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEE
Q 019941 232 TRSNFKYLYWTLTQQLAHHTING---CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 308 (333)
Q Consensus 232 q~~~t~~mi~~~~~lIa~~~S~~---~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~ 308 (333)
-++-.++++|-+-.-++|+-|.+ ..|.|--|+.||+-.--|.++ |+.+|-.++=.+|-..|-.+|-|.|
T Consensus 130 p~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VK--------IaDlGlaR~~~~plkpl~s~d~VVV 201 (438)
T KOG0666|consen 130 PRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVK--------IADLGLARLFNNPLKPLASLDPVVV 201 (438)
T ss_pred CHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeE--------eecccHHHHhhccccccccCCceEE
Confidence 34557888898888899984333 379999999999944333333 3334444433466777888999999
Q ss_pred EEEEc
Q 019941 309 TGFCK 313 (333)
Q Consensus 309 ~~~~~ 313 (333)
++|-.
T Consensus 202 TiWYR 206 (438)
T KOG0666|consen 202 TIWYR 206 (438)
T ss_pred EEEec
Confidence 99843
No 41
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=27.73 E-value=37 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=11.6
Q ss_pred CCCCCCCCCCEEEEEEE
Q 019941 295 FTRKFLEDGDEVTFTGF 311 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~~~ 311 (333)
....|+++||.|.++.+
T Consensus 37 r~~iwI~~GD~V~V~~~ 53 (65)
T PF01176_consen 37 RKRIWIKRGDFVLVEPS 53 (65)
T ss_dssp HTCC---TTEEEEEEES
T ss_pred eeeEecCCCCEEEEEec
Confidence 56889999999999953
No 42
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=26.54 E-value=1.1e+02 Score=25.17 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEEEEE
Q 019941 296 TRKFLEDGDEVTFTGF 311 (333)
Q Consensus 296 ~~~~L~~GD~V~~~~~ 311 (333)
...|+++||.|.|+.+
T Consensus 56 k~IwI~~GD~VlVe~~ 71 (100)
T PRK04012 56 KRMWIREGDVVIVAPW 71 (100)
T ss_pred ccEEecCCCEEEEEec
Confidence 3799999999999954
No 43
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=26.27 E-value=1.2e+02 Score=23.64 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.5
Q ss_pred CCCCCCCCCEEEEEEE
Q 019941 296 TRKFLEDGDEVTFTGF 311 (333)
Q Consensus 296 ~~~~L~~GD~V~~~~~ 311 (333)
...|+++||.|.++.+
T Consensus 35 k~iwI~~GD~VlV~~~ 50 (78)
T cd04456 35 KNIWIKRGDFLIVDPI 50 (78)
T ss_pred cCEEEcCCCEEEEEec
Confidence 3599999999999953
No 44
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=1.7e+02 Score=27.53 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=45.5
Q ss_pred hcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccce-----ec---CCCCCCCCCCCCEEEEEEE-----------E
Q 019941 252 INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL-----SL---DGFTRKFLEDGDEVTFTGF-----------C 312 (333)
Q Consensus 252 S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l-----~~---~~~~~~~L~~GD~V~~~~~-----------~ 312 (333)
++..-=.+||.++ |..-..-||...+.+.|-... .+ .+++.+-|+-||.|-..+. |
T Consensus 58 ~kRYiP~~~D~VI-----GiV~~~~gd~ykVDigg~~~a~L~~laFe~AtkrNrPnl~vGdliyakv~~a~~~~Epel~C 132 (230)
T KOG1004|consen 58 QKRYIPVKGDHVI-----GIVTSKSGDIYKVDIGGSEPASLSYLAFEGATKRNRPNLQVGDLIYAKVVDANKDMEPELTC 132 (230)
T ss_pred cceecCCCCCEEE-----EEEEeccCceEEEecCCCCeeeeeeccccCccccCCCccccccEEEEEEEecCCCcCcceEE
Confidence 3444567788765 444445678888888773222 22 3567889999998865541 2
Q ss_pred -cCCCceeeeecee
Q 019941 313 -KGNGYTVGFGTCS 325 (333)
Q Consensus 313 -~~~~~~~g~G~~~ 325 (333)
++-|++.|||.|.
T Consensus 133 ids~graaGfG~Lk 146 (230)
T KOG1004|consen 133 IDSTGRAAGFGVLK 146 (230)
T ss_pred EcccCcccCccccc
Confidence 2338999999987
No 45
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=22.18 E-value=1.1e+02 Score=29.03 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=35.2
Q ss_pred CCCEEEcCCCCCCc-------------------cCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCcee
Q 019941 259 SGDLLGTGTISGPE-------------------PESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTV 319 (333)
Q Consensus 259 pGDvI~TGTp~Gv~-------------------~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~ 319 (333)
-|.++.+|+-+.+. .+++||.+-. |++ .....+++||+++++ +.
T Consensus 195 nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~T-----Gs~----~~~~~v~~G~~~~~~--~~------ 257 (267)
T TIGR02312 195 NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLA-----GSF----TRPVAARSGDTFHAD--YG------ 257 (267)
T ss_pred CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEEC-----CCC----CCceecCCCCEEEEE--Ec------
Confidence 45678888665431 3578887654 222 246789999999999 55
Q ss_pred eeeceeee
Q 019941 320 GFGTCSGK 327 (333)
Q Consensus 320 g~G~~~~~ 327 (333)
|+|+++=+
T Consensus 258 glG~v~~~ 265 (267)
T TIGR02312 258 PLGTISVR 265 (267)
T ss_pred CCceEEEE
Confidence 88987644
No 46
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=21.17 E-value=1.6e+02 Score=23.64 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.3
Q ss_pred cCcccCCCCEEEcCCCCC
Q 019941 253 NGCNLRSGDLLGTGTISG 270 (333)
Q Consensus 253 ~~~tL~pGDvI~TGTp~G 270 (333)
+.-||+.||.|..|+-.|
T Consensus 23 ~~GtL~~Gd~iv~G~~~g 40 (95)
T cd03702 23 QNGTLKVGDVLVAGTTYG 40 (95)
T ss_pred EcCeEeCCCEEEEccccc
Confidence 446899999999999866
No 47
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=20.95 E-value=1.1e+02 Score=26.55 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=49.5
Q ss_pred hhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec--CCCCCCCCCCCCEEEEE
Q 019941 237 KYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL--DGFTRKFLEDGDEVTFT 309 (333)
Q Consensus 237 ~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~--~~~~~~~L~~GD~V~~~ 309 (333)
...+.++.+++-.. -..+|.+|..|..--...+-.++.|+.+.+...+ +.+++ .+..-.-=..||.|+++
T Consensus 47 ~g~~td~~~vvG~~--~rR~l~aGq~i~~~~L~~p~lV~rG~~V~i~~~~-ggl~i~~~G~AL~~G~~Gd~IrV~ 118 (141)
T PRK12618 47 PGALTDPAQAIGQE--ARVTLYAGRPIRAADLGPPAIVDRNQLVPLAYRL-GGLEIRTEGRALSRGGVGDEIRVM 118 (141)
T ss_pred ccccCCHHHhCCcE--EEeecCCCCeeCHHHcCCccEEeCCCEEEEEEec-CCEEEEEEEEEcccCCCCCEEEEE
Confidence 45778888888775 2468999999988877777778999999997754 33332 22222222578999886
No 48
>PRK08582 hypothetical protein; Provisional
Probab=20.29 E-value=1.3e+02 Score=25.90 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=30.9
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCccceec-----CCCCCCCCCCCCEEEEEE
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL-----DGFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~--~~g~g~l~~-----~~~~~~~L~~GD~V~~~~ 310 (333)
|.++.|++ +.|+..++.. .|-.|++. ++|+-.++- -......++.||.|++.|
T Consensus 1 m~~kvG~i-v~G~V~~I~~--fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV 60 (139)
T PRK08582 1 MSIEVGSK-LQGKVTGITN--FGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKV 60 (139)
T ss_pred CCCcCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEE
Confidence 45777887 4777776543 35444443 233322221 112346799999999996
No 49
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=20.16 E-value=65 Score=27.41 Aligned_cols=13 Identities=46% Similarity=0.450 Sum_probs=8.1
Q ss_pred CCCCCCCEEEEEE
Q 019941 298 KFLEDGDEVTFTG 310 (333)
Q Consensus 298 ~~L~~GD~V~~~~ 310 (333)
--|++||.|+|+|
T Consensus 109 L~L~DGD~V~v~V 121 (121)
T PF01982_consen 109 LGLKDGDEVEVEV 121 (121)
T ss_dssp TT--TT-EEEEEE
T ss_pred cCCCCCCEEEEEC
Confidence 4689999999983
Done!