Query 019941
Match_columns 333
No_of_seqs 197 out of 1616
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyo_A Fumarylacetoacetate hyd 100.0 2.2E-72 7.5E-77 558.9 20.8 310 24-333 109-419 (421)
2 3lzk_A Fumarylacetoacetate hyd 100.0 5.5E-63 1.9E-67 482.5 16.4 283 2-333 56-358 (359)
3 3r6o_A 2-hydroxyhepta-2,4-dien 100.0 2.4E-56 8.3E-61 430.8 18.2 246 2-332 66-322 (329)
4 4dbf_A 2-hydroxyhepta-2,4-dien 100.0 1.1E-54 3.6E-59 413.0 18.0 217 20-331 62-288 (288)
5 3rr6_A Putative uncharacterize 100.0 8.9E-54 3.1E-58 402.6 16.1 212 20-331 46-263 (265)
6 3l53_A Putative fumarylacetoac 100.0 8.5E-51 2.9E-55 374.1 19.3 199 28-285 3-210 (224)
7 2dfu_A Probable 2-hydroxyhepta 100.0 2.5E-50 8.5E-55 379.2 18.9 216 21-332 30-260 (264)
8 1wzo_A HPCE; structural genomi 100.0 7.2E-50 2.5E-54 372.1 20.6 216 20-331 25-245 (246)
9 3s52_A Putative fumarylacetoac 100.0 6.8E-50 2.3E-54 367.3 18.3 207 25-329 8-221 (221)
10 1saw_A Hypothetical protein FL 100.0 5.8E-47 2E-51 348.4 17.8 198 42-331 19-223 (225)
11 1gtt_A 4-hydroxyphenylacetate 100.0 5.6E-47 1.9E-51 378.0 17.2 212 22-331 207-425 (429)
12 2q18_X 2-keto-3-deoxy-D-arabin 100.0 2E-46 6.8E-51 357.3 15.8 220 22-332 57-290 (293)
13 1nkq_A Hypothetical 28.8 kDa p 100.0 2.4E-44 8.3E-49 337.6 16.1 198 34-288 4-237 (259)
14 1gtt_A 4-hydroxyphenylacetate 100.0 1.1E-43 3.6E-48 354.3 19.6 187 47-291 12-200 (429)
15 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 100.0 2.5E-37 8.7E-42 290.8 9.9 178 72-328 77-266 (267)
16 2wqt_A 2-keto-4-pentenoate hyd 100.0 4.1E-36 1.4E-40 283.0 16.2 187 47-331 66-263 (270)
17 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 92.0 0.084 2.9E-06 48.8 3.3 16 276-291 248-263 (267)
18 3l53_A Putative fumarylacetoac 55.9 6.9 0.00024 35.0 3.1 13 298-310 197-209 (224)
19 1tyg_B YJBS; alpha beta barrel 49.7 12 0.00041 28.7 3.1 13 297-309 69-81 (87)
20 2kl0_A Putative thiamin biosyn 46.9 8.5 0.00029 28.3 1.8 13 297-309 47-59 (73)
21 2k52_A Uncharacterized protein 44.6 12 0.0004 27.6 2.2 53 255-310 1-56 (80)
22 2k5p_A THis protein, thiamine- 40.2 22 0.00074 26.5 3.2 13 297-309 51-63 (78)
23 2cu3_A Unknown function protei 40.0 22 0.00076 25.0 3.1 19 227-250 5-23 (64)
24 1f0z_A THis protein; ubiquitin 35.0 27 0.00093 24.6 2.9 20 227-250 6-25 (66)
25 2k9x_A Tburm1, uncharacterized 33.6 25 0.00085 28.0 2.7 61 241-308 35-95 (110)
26 2dgy_A MGC11102 protein; EIF-1 33.0 61 0.0021 25.9 4.9 16 295-310 49-64 (111)
27 3i4o_A Translation initiation 32.7 28 0.00097 26.2 2.7 31 276-311 35-65 (79)
28 2ja9_A Exosome complex exonucl 31.9 63 0.0021 27.7 5.2 51 255-310 3-62 (175)
29 2nn6_I 3'-5' exoribonuclease C 26.2 37 0.0013 29.9 2.7 54 254-310 76-146 (209)
30 2khj_A 30S ribosomal protein S 25.8 31 0.0011 26.7 2.0 53 255-310 27-86 (109)
31 1wi5_A RRP5 protein homolog; S 24.1 31 0.001 27.2 1.7 64 255-322 17-91 (119)
32 2oyn_A Hypothetical protein MJ 20.9 53 0.0018 27.6 2.6 16 298-313 120-135 (146)
33 2ba0_A Archeal exosome RNA bin 20.8 1.2E+02 0.0041 26.9 5.1 67 257-323 5-79 (229)
34 3gt2_A Putative uncharacterize 20.7 51 0.0017 26.9 2.4 38 255-309 88-125 (142)
35 2k4k_A GSP13, general stress p 20.6 49 0.0017 26.6 2.3 52 256-310 4-62 (130)
No 1
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=100.00 E-value=2.2e-72 Score=558.91 Aligned_cols=310 Identities=58% Similarity=1.118 Sum_probs=280.2
Q ss_pred ccccCCcEEeCCcccCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCC
Q 019941 24 LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNS 103 (333)
Q Consensus 24 ~~~~~~v~ll~Pv~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~ 103 (333)
.+++++|+|++|+.+++|++|+++++|+.|+++.|+++.++.+|+|++.|++|+|+++|++++|++|.+|.+++.+.+..
T Consensus 109 ~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~ 188 (421)
T 1hyo_A 109 FTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSK 188 (421)
T ss_dssp EEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTS
T ss_pred cccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcCCCCEEEEcccceEEcCCCeEECCCCcccCcccc
Confidence 58999999999999999999999999999999887776666789999999999999999999999999998765444444
Q ss_pred CCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCccCCccccc
Q 019941 104 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTL 183 (333)
Q Consensus 104 ~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~lGP~ivt~ 183 (333)
.|.+..++.+|||+||||||||.++.|+++++++|++||+||+++||||+||+|.|++.+++|+++|+|++++|||+||+
T Consensus 189 ~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~ 268 (421)
T 1hyo_A 189 PPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPM 268 (421)
T ss_dssp CCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEH
T ss_pred ccccccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecch
Confidence 46666789999999999999999777899999999999999999999999999999988889999999999999999999
Q ss_pred cccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEE
Q 019941 184 DALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL 263 (333)
Q Consensus 184 del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI 263 (333)
|+++++|...|+++|..+|||.++++..++|.+++++|.+...||+++|++++++|+|++.++|+|++|++++|+|||||
T Consensus 269 d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI 348 (421)
T 1hyo_A 269 DALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLL 348 (421)
T ss_dssp HHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEE
T ss_pred hhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEE
Confidence 99999998889999999999998888877777776664222223999999999999999999999996689999999999
Q ss_pred EcCCCCCCccCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeCCC
Q 019941 264 GTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 333 (333)
Q Consensus 264 ~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~~~ 333 (333)
+||||+|++..+.||.+|++++|++++++ .++++.|||+||+|+++++|..||++||||+|+|+|+++++
T Consensus 349 ~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~~ 419 (421)
T 1hyo_A 349 ASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPALS 419 (421)
T ss_dssp ECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC-
T ss_pred EcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCccCCCCCEEEEEEEECCCCceeeeeeeEEEEecCCC
Confidence 99999999999999999999999999988 56789999999999999998889999999999999999853
No 2
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.5e-63 Score=482.49 Aligned_cols=283 Identities=21% Similarity=0.245 Sum_probs=231.3
Q ss_pred HHHHhccCchh---chhhh-hhccC--CccccCCcEEeCCcccC-CcceEEecHHHHHHhccccCCCCCCCCCCCCCCce
Q 019941 2 LQKLLSSNEAT---LRDNA-NLRQK--SLVPMGKVEMLLPMEIG-DYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPI 74 (333)
Q Consensus 2 ~~~~l~~~~~~---l~~~~-~~~~~--~~~~~~~v~ll~Pv~~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~ 74 (333)
||++|+.|++. |++.. ++..+ ..++++++++++|++++ .|.++.+|.+|++|+++.+ + ++.|+.|++.|+
T Consensus 56 l~~~l~~w~~~~~~l~~l~~~l~~~~~~~~~~~~v~ll~Pv~~~~~~~~g~NY~~Ha~e~~~~~-g--~~~p~~~~~~P~ 132 (359)
T 3lzk_A 56 LQAALDDWAHAGPRLERVAEGIETGAQPTMRFHEHDAASPLPRAFQWADGSAYVNHVELVRKAR-N--AEMPASFWTDPL 132 (359)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCSCCEECCGGGBCCSSSSCSCEEEECCCHHHHHHHHHHT-T--CCCCGGGGTSCC
T ss_pred HHHHHhccHhhHHHHHHHHHHHhcCCCCCCcCccceEcCCCCCCCEEEEEcCHHHHHHHHHHhc-C--CCCCCcccCccE
Confidence 78999988753 33322 23333 45799999999999865 4555556889999997653 2 235778889999
Q ss_pred eeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchh
Q 019941 75 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 154 (333)
Q Consensus 75 ~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaR 154 (333)
+|+|+++|+++++++|.+|.. ++.+|||+||||||||. |++|++++|++||+|||++||||+|
T Consensus 133 ~F~k~~ssv~g~~~~I~~P~~--------------s~~lD~E~ELavVIGk~---~~~v~~e~A~~~I~Gytl~ND~SaR 195 (359)
T 3lzk_A 133 IYQGGSDSFLGPRDPILMADD--------------AWGIDMEGEAAVIVDDV---PMGATLDEAKAAIRLVMLVNDVSLR 195 (359)
T ss_dssp EEEECCSSCBCTTSCEEESCT--------------TSCEECCEEEEEEECCB---CTTCCHHHHHHTEEEEEEEECCEET
T ss_pred EEECCCceEECCCCCEECCCC--------------CCCeeEEEEEEEEECCC---CCCCCHHHHHhhhcEEEEEEeccHH
Confidence 999999999999999999986 78999999999999998 9999999999999999999999999
Q ss_pred hhhhhhhcC-CCCccccccCCccCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEe
Q 019941 155 DIQAWEYVP-LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTR 233 (333)
Q Consensus 155 d~q~~~~~~-~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~ 233 (333)
|+|.+++.+ ++|+++|+| +++|||+||+|+++++|.+ ...++.|+++| ||+++|+
T Consensus 196 D~Q~~~~~~g~~~~~~K~~-~~~gP~iVt~del~~~~~~---------------~~~~L~l~~~v--------NGe~~q~ 251 (359)
T 3lzk_A 196 GLIPGELAKGFGFYQSKPS-SAFSPVAVTPEELGEAWDG---------------GKLHLPLHVDL--------NGEPFGR 251 (359)
T ss_dssp TTHHHHHHHTSCCSTTSCC-CEECSCEECHHHHGGGBCS---------------SCBCSBEEEEE--------TTEEEEC
T ss_pred HhhhhhhccCCCccccccc-cccCCccccHHHcCccccC---------------CccceEEEEEE--------CCEEEEc
Confidence 999998753 799999996 6799999999999765421 12457788877 9999999
Q ss_pred cc-hhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCC-----------CCcEEEEEecCccceecCCCCCCCCC
Q 019941 234 SN-FKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPES-----------LGCLLELTWNGQKPLSLDGFTRKFLE 301 (333)
Q Consensus 234 ~~-t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~-----------~Gd~~e~~~~g~g~l~~~~~~~~~L~ 301 (333)
++ |++|+|+++++|+|+ |+++||+|||||+||||+|+.+-. .||.+|.. ++.++..+..++.|||
T Consensus 252 ~~~t~~Mif~~~~lIa~l-S~~~tL~pGDvI~TGTpsGv~~~~~~~~~~~~~~G~~~l~E~~--~~~~~~~g~~~~~fL~ 328 (359)
T 3lzk_A 252 ANAGIDMTFDFPQLIVHA-ARTRPLSAGTIIGSGTVSNKLEGGPGRPVSEGGAGYSCIAELR--MIETIEGGAPKTQFLK 328 (359)
T ss_dssp CBTTSSCSSCHHHHHHHH-TTTSCBCTTEEEECCSCCCCBTTBCCCCGGGTSCBCSSHHHHH--HHHHHHHSSCCSCCBC
T ss_pred CcCcccccCCHHHHHHHH-hCCCCcCCCCEEEcCCcCCCCcccccccccccccccccchhhh--hhhhhccCCCCCCcCC
Confidence 99 999999999999999 899999999999999999995432 46777662 2333333434457999
Q ss_pred CCCEEEEEEEEcCCCceeeeeceeeeEeeCCC
Q 019941 302 DGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 333 (333)
Q Consensus 302 ~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~~~ 333 (333)
+||+|++++ ...+++++||+|+|+||++.+
T Consensus 329 ~GD~V~i~~--~~~~g~~~~G~l~n~V~~~~~ 358 (359)
T 3lzk_A 329 FGDVVRIEM--KDRTGHSIFGAIEQKVGKYER 358 (359)
T ss_dssp TTCEEEEEE--BCTTSCBSSCCEEEEEEECCC
T ss_pred CCCEEEEEE--EcCCCcccccceEEEEEeCCC
Confidence 999999994 444446799999999999863
No 3
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=100.00 E-value=2.4e-56 Score=430.81 Aligned_cols=246 Identities=22% Similarity=0.309 Sum_probs=194.7
Q ss_pred HHHHhccCchhchhhhhhccCCccccCCcEEeCCcccCCcceEEe-c---HHHHHHhccccCCCCCCCCCCCCCCceeee
Q 019941 2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFS-S---MHHAKNCGTIFRGPANAVPANWFHLPIAYH 77 (333)
Q Consensus 2 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~v~ll~Pv~~~~~~~~~~-~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~ 77 (333)
||+.|+.....|++..+...+..++++++++++|+..+ .+++| | .+|++ ++. + .|. ++.|++|+
T Consensus 66 l~~~ld~~~~~l~~~l~~~~~~~~~~~~v~llaPv~~p--~kI~cvG~NY~~H~~-~g~-----~---~P~-~~~P~~F~ 133 (329)
T 3r6o_A 66 LIALLPQISPLISDELAGGSFEPVPLDSVALGAPIPEP--GQVIALGFNYPTHSD-TDS-----P---LPK-MADPVVFM 133 (329)
T ss_dssp HHTTHHHHHHHHHHTC-------CBGGGSCBCCSSSSC--SCEEEEESCSTTC---------------------CCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccceEcCCCCCC--CeEEEEcccHHHHHH-hCC-----C---CCC-ccCCEEEE
Confidence 34444443333432112224456899999999999965 34444 4 55777 432 1 332 24899999
Q ss_pred cCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhh
Q 019941 78 GRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 157 (333)
Q Consensus 78 k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q 157 (333)
|+++++++++++|.+|.. +.++|||+||||||||. ++++++++|++||+||+++||||+||+|
T Consensus 134 K~~~s~~g~~~~I~~P~~--------------~~~~d~E~ELavVIGk~---~~~v~~e~A~~~I~Gytv~NDvSaRd~q 196 (329)
T 3r6o_A 134 KSPTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAIKHVAGYMLANDITARDVA 196 (329)
T ss_dssp ECGGGEECTTCCEEECTT--------------CSCEECCEEEEEEECSC---BSSCCGGGGGGGEEEEEEEECCEEHHHH
T ss_pred cccceEECCCCceECCCC--------------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEEEEEEEeEHHHHh
Confidence 999999999999999986 78999999999999999 9999999999999999999999999998
Q ss_pred hh---hhc--CCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeE
Q 019941 158 AW---EYV--PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCV 230 (333)
Q Consensus 158 ~~---~~~--~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~ 230 (333)
.. .+. ..+|+++|+||++ +|||+||+|++.+ +.++.|+++| ||++
T Consensus 197 ~~~g~~~~~~~~~w~~aK~fd~~~plGP~ivt~del~d--------------------~~~l~l~l~v--------NGe~ 248 (329)
T 3r6o_A 197 LPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTT--------------------FETFDFELRI--------NGEL 248 (329)
T ss_dssp CTTC------CCCHHHHHCSTTSEEBCSCEEECTTCSS--------------------CCCCEEEEEE--------TTEE
T ss_pred hhhcccccccCCccccccCcCcCcccCCeEcChhhcCC--------------------hhhcEEEEEE--------CCEE
Confidence 63 111 2478999999996 9999999999854 3668888888 9999
Q ss_pred EEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEE
Q 019941 231 VTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 231 ~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~ 310 (333)
+|++++++|+|+++++|+|+ |+++||+|||||+||||+|++.. ++++.||++||+|+++
T Consensus 249 ~q~g~t~dMif~~~~lIa~l-S~~~tL~pGDvI~TGTp~GvG~~-------------------~~p~~~l~~GD~V~~e- 307 (329)
T 3r6o_A 249 RQSGSTVDMTLGFAEVVETV-SATIALRAGDIILTGTPGGCGFQ-------------------FDPPRYLRPGDVIEAH- 307 (329)
T ss_dssp EEEEEGGGCSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCGGG-------------------SSSCCCCCTTCEEEEE-
T ss_pred EEecCHHHhcCCHHHHHHHH-HcCCCcCCCCEEEcCCccccCCC-------------------CCCCccCCCCCEEEEE-
Confidence 99999999999999999999 79999999999999999998642 4567899999999999
Q ss_pred EEcCCCceeeeeceeeeEeeCC
Q 019941 311 FCKGNGYTVGFGTCSGKIVPST 332 (333)
Q Consensus 311 ~~~~~~~~~g~G~~~~~vv~~~ 332 (333)
|+ |||+|+|+|+...
T Consensus 308 -i~------glG~l~n~V~~~~ 322 (329)
T 3r6o_A 308 -SA------KLGKMRLPVHDEK 322 (329)
T ss_dssp -ET------TTEEEEEEEEECC
T ss_pred -Ec------CceEEEEEEEeCC
Confidence 56 8999999999864
No 4
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=100.00 E-value=1.1e-54 Score=412.99 Aligned_cols=217 Identities=23% Similarity=0.294 Sum_probs=183.6
Q ss_pred ccCCccccCCcEEeCCcccCCcceEEe-c---HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCC
Q 019941 20 RQKSLVPMGKVEMLLPMEIGDYTDFFS-S---MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRG 95 (333)
Q Consensus 20 ~~~~~~~~~~v~ll~Pv~~~~~~~~~~-~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~ 95 (333)
..+..+++++++|++|+.+. +++| | .+|++|++.. .+ .| +.|++|+|+++++++++++|.+|..
T Consensus 62 ~~g~~~~~~~v~ll~Pv~p~---ki~cvG~NY~~H~~E~~~~---~~---~p---~~P~~F~K~~~sv~g~~~~I~~P~~ 129 (288)
T 4dbf_A 62 FTGREWPLKDVRLLAPMLPS---KVVAIGRNYADHVAEVFKK---SA---ES---LPPTLFLKPPTAVTGPESPIRIPSF 129 (288)
T ss_dssp EEEEEEEGGGSEEECSCCCS---CEEEEESCBCC-----------------C---CCCEEEEECGGGEECTTCCEEECTT
T ss_pred cCCceeecccCeEcCCCCCc---eEEEEeccHHHHHHHhccC---CC---CC---CCCEEEEeCcceeeCCCCceECCCC
Confidence 35667899999999999863 4444 4 5599998731 01 23 5799999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc
Q 019941 96 QFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT 175 (333)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~ 175 (333)
++++|||+|||+||||+ ++++++++|++||+||+++||||+||+|.++. +|+++|+||++
T Consensus 130 --------------~~~~d~E~ELavVIGk~---~~~v~~~~A~~~I~Gytv~nDvsaRd~Q~~~~---~w~~aK~fd~~ 189 (288)
T 4dbf_A 130 --------------ATKVEFEGELAVVIGKP---CKNVKADDWKSVVLGFTIINDVSSRDLQFADG---QWARAKGIDTF 189 (288)
T ss_dssp --------------CCSEECCEEEEEEECSC---BSSCCGGGGGGGEEEEEEEECCEEHHHHHHHS---SSHHHHHSTTC
T ss_pred --------------CCceeEEEEEEEEECCC---cCCCCHHHHhhheeEEEEEEEeEhHHhhhccC---CccccccCCCC
Confidence 78999999999999999 99999999999999999999999999998763 79999999996
Q ss_pred --cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCC----eEEEecchhhhccCHHHHHHH
Q 019941 176 --LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS----CVVTRSNFKYLYWTLTQQLAH 249 (333)
Q Consensus 176 --lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NG----e~~q~~~t~~mi~~~~~lIa~ 249 (333)
+|||+++..++.+ +.++.|+++| || +++|++++++|+|+++++|+|
T Consensus 190 ~plGP~ivt~~~~~d--------------------~~~l~i~~~v--------NG~~~~e~~Q~~~t~~mi~~~~~lIa~ 241 (288)
T 4dbf_A 190 GPIGPWIETDINSID--------------------LDNLPIKARL--------THDGETQLKQDSNSNQMIMKMGEIIEF 241 (288)
T ss_dssp EEEEEEEECCGGGSC--------------------TTSCEEEEEE--------EETTEEEEEEEEEGGGBSSCHHHHHHH
T ss_pred ceeCCccccccccCC--------------------ccccEEEEEE--------cCCcceEEEEecCHHHhcCCHHHHHHH
Confidence 9999998654322 4678899988 99 999999999999999999999
Q ss_pred HHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEe
Q 019941 250 HTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 329 (333)
Q Consensus 250 ~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv 329 (333)
+ |+++||+|||||+||||+|++ +|++||+|+++ |+ |+|+|+|+|+
T Consensus 242 l-S~~~tL~pGDvI~TGTP~Gvg--------------------------~l~~GD~v~v~--ie------giG~L~n~v~ 286 (288)
T 4dbf_A 242 I-TASMTLLPGDVIATGSPAGTE--------------------------AMVDGDYIEIE--IP------GIGKLGNPVV 286 (288)
T ss_dssp H-HTTSCBCTTCEEECCCCSCCC--------------------------BCCTTCEEEEE--ET------TTEEEEEEEE
T ss_pred H-hCCCCcCCCCEEEcCCCCCCe--------------------------ecCCCCEEEEE--EC------CcEEEEEEEE
Confidence 9 799999999999999999874 36999999999 56 9999999999
Q ss_pred eC
Q 019941 330 PS 331 (333)
Q Consensus 330 ~~ 331 (333)
+|
T Consensus 287 ~~ 288 (288)
T 4dbf_A 287 DA 288 (288)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 5
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=100.00 E-value=8.9e-54 Score=402.61 Aligned_cols=212 Identities=30% Similarity=0.381 Sum_probs=187.2
Q ss_pred ccCCccccCCcEEeCCcccCCcceEEe-cH---HHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCC
Q 019941 20 RQKSLVPMGKVEMLLPMEIGDYTDFFS-SM---HHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRG 95 (333)
Q Consensus 20 ~~~~~~~~~~v~ll~Pv~~~~~~~~~~-~~---~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~ 95 (333)
.++..+++++++|++|+.+. +++| |+ +|++|++.. .| +.|++|+|+++++++++++|.+|..
T Consensus 46 ~~~~~~~~~~v~ll~P~~p~---ki~cvG~NY~~h~~e~g~~--------~P---~~P~~F~K~~~s~~g~~~~I~~P~~ 111 (265)
T 3rr6_A 46 FTGRQWPLADVRLLAPILAS---KVVAMGKNYAAHAAEMGGD--------PP---ESPVIFIKPNTSIIGPGLPIQLPPS 111 (265)
T ss_dssp EEEEEEEGGGSEECCSSCCS---CEEEESCCBCSSGGGTTSS--------CC---CCCCEEEECGGGEECTTSCEECCTT
T ss_pred cCCcEeecccCeEcCCCCCc---eEEEEEcCHHHHHHHhCCC--------CC---CCCEEEEeCcceEeCCCCceECCCC
Confidence 45678999999999999863 4555 54 588888642 33 5799999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc
Q 019941 96 QFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT 175 (333)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~ 175 (333)
+.++|||+|||+||||+ +++++++||++||+||+++||+|+||+|.++. +|.++|+||++
T Consensus 112 --------------~~~~d~E~ELavVIGk~---~~~v~~~~A~~~V~Gyt~~nDvsaRd~q~~~~---~w~~aK~fd~~ 171 (265)
T 3rr6_A 112 --------------ATEVHHEGELAIVIGRP---CKDVPAARAAENILGYTIGNDVSARDHQRADG---QWTRAKGHDTF 171 (265)
T ss_dssp --------------CSCEEECEEEEEEECSC---BSSCCGGGTGGGEEEEEEEECCEEHHHHHHHS---SSHHHHHSTTC
T ss_pred --------------CCceeEEEEEEEEECCc---CCCCCHHHHHhheeEEEEEEEeEhHHhhhccC---CcceecccCCC
Confidence 78999999999999999 89999999999999999999999999998653 79999999996
Q ss_pred --cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhc
Q 019941 176 --LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTIN 253 (333)
Q Consensus 176 --lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~ 253 (333)
+|||+++. ++ +.++.|+++| ||+++|++++++|+|+++++|+|+ |+
T Consensus 172 ~plGP~ivt~--~d---------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~~lIa~l-S~ 219 (265)
T 3rr6_A 172 CPLGPWIVTD--LD---------------------PADLEIRTEV--------NGQVRQRSRTSLLLHDVGAIVEWV-SA 219 (265)
T ss_dssp EEEEEEEESS--CC---------------------GGGCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HH
T ss_pred cccCCcCcCC--CC---------------------cccCEEEEEE--------CCEEEEEECHHhhcCCHHHHHHHH-hc
Confidence 99999974 43 3568889888 999999999999999999999999 79
Q ss_pred CcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeC
Q 019941 254 GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331 (333)
Q Consensus 254 ~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~ 331 (333)
++||+|||||+||||+|++ +|++||+|+++ |+ |+|+|+|+|+.+
T Consensus 220 ~~tL~pGDvI~TGTp~Gvg--------------------------~l~~GD~v~v~--i~------giG~l~n~v~~~ 263 (265)
T 3rr6_A 220 VMTLLPGDVILTGTPEGVG--------------------------PIVDGDTVSVT--IE------GIGTLSNPVVRK 263 (265)
T ss_dssp HSCBCTTCEEECCCCSCCE--------------------------ECCTTCEEEEE--ET------TTEEEEEEEECC
T ss_pred CCCcCCCCEEEeCCCCCce--------------------------eCCCCCEEEEE--EC------CcEEEEEEEEeC
Confidence 9999999999999999874 36899999998 56 899999999875
No 6
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=100.00 E-value=8.5e-51 Score=374.10 Aligned_cols=199 Identities=22% Similarity=0.244 Sum_probs=172.7
Q ss_pred CCcEEeCCcccCCcceEEe----cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCC
Q 019941 28 GKVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNS 103 (333)
Q Consensus 28 ~~v~ll~Pv~~~~~~~~~~----~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~ 103 (333)
+.|++++|++.+ .++++| |.+|++|++.. .| +.|++|+|++++++++|++|.+|..
T Consensus 3 ~~~~~~~P~p~~-~~ki~cvG~Ny~~h~~e~g~~--------~p---~~P~~F~K~~~s~~~~g~~I~~P~~-------- 62 (224)
T 3l53_A 3 ELILNQRPYPRD-LGKIVCVGRNYAAHAKELNNP--------IP---SSPILFIKPASSAVPFGPVFSIPKD-------- 62 (224)
T ss_dssp CCEETTEECSSC-CCEEEEEECCSHHHHHHTTCC--------CC---SSCEEEEEEGGGEEESCSEECCCSS--------
T ss_pred ccceecCCCCCC-CCeEEEEccCHHHHHHHhCCC--------CC---CCCEEEecCCceEECCCCeEecCCC--------
Confidence 578899999754 256666 56799998742 34 5799999999999999999999976
Q ss_pred CCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhc-CCCCccccccCCc--cCCcc
Q 019941 104 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWI 180 (333)
Q Consensus 104 ~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~-~~~~~~aK~~dt~--lGP~i 180 (333)
+.++|||+|||+||||+ +++++++||++||+||+++||+|+||+|.+++. +++|.++|+||++ +|||
T Consensus 63 ------~~~~d~E~ELavvIgk~---~~~i~~~~A~~~I~Gy~~~nDvs~Rd~q~~~~~~g~~w~~aK~fd~~~plGp~- 132 (224)
T 3l53_A 63 ------QGSVHHELEIAILIGKA---LSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEF- 132 (224)
T ss_dssp ------SSCEEECEEEEEEECSC---BSSCCHHHHHHHEEEEEEEECCEEHHHHHHHHHTTCCSHHHHSSTTSEEECCB-
T ss_pred ------CCCcceEEEEEEEECCC---CCCCCHHHHHhhccEEEEEEEeEhHHhhhhhhhcCCCcceeeccCCCcccCCc-
Confidence 67999999999999999 899999999999999999999999999998764 4679999999995 9997
Q ss_pred cccc--ccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccC
Q 019941 181 VTLD--ALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLR 258 (333)
Q Consensus 181 vt~d--el~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~ 258 (333)
++++ ++.+ +.++.++++| ||+++|++++++|+|++.++|+|+ |++++|+
T Consensus 133 v~~~~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~mi~~~~~lia~l-S~~~tL~ 183 (224)
T 3l53_A 133 VAVNLASEDE--------------------WQAIGLTLEK--------NGQFQQQGSSAEMLFPILPLIAHM-SEHFSLQ 183 (224)
T ss_dssp BCCCCSSGGG--------------------GGGEEEEEEE--------TTEEEEEEEGGGCSSCHHHHHHHH-HHHSCBC
T ss_pred EeCchhhcCC--------------------hhccEEEEEE--------CCEEEEEEcHHHhcCCHHHHHHHH-HCCCCcC
Confidence 4667 6643 4678888888 999999999999999999999999 7999999
Q ss_pred CCCEEEcCCCCCCccCCCCcEEEEEec
Q 019941 259 SGDLLGTGTISGPEPESLGCLLELTWN 285 (333)
Q Consensus 259 pGDvI~TGTp~Gv~~~~~Gd~~e~~~~ 285 (333)
|||||+||||+|++++++||.++++++
T Consensus 184 pGDvI~TGTp~Gvg~l~~GD~v~~~i~ 210 (224)
T 3l53_A 184 PGDVILTGTPAGVGPLEVGDSLSAKLS 210 (224)
T ss_dssp TTCEEECCCCSCCEECCTTCEEEEEEE
T ss_pred CCCEEEcCCCCCCEEcCCCCEEEEEEE
Confidence 999999999999887766666666666
No 7
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-50 Score=379.23 Aligned_cols=216 Identities=23% Similarity=0.297 Sum_probs=178.8
Q ss_pred cCCccccCCcEEeCCcccCCcceEEe----cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCC---------
Q 019941 21 QKSLVPMGKVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISG--------- 87 (333)
Q Consensus 21 ~~~~~~~~~v~ll~Pv~~~~~~~~~~----~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g--------- 87 (333)
.+..+++++++|++|+.+. +++| |.+|++|++..+. .+ .| +.|++|+|++++++++|
T Consensus 30 ~~~~~~~~~~~ll~P~~p~---~i~~~g~Ny~~H~~e~~~~~~---~~-~p---~~P~~f~k~~~s~~~~~~~~rp~g~~ 99 (264)
T 2dfu_A 30 TGRRYDLASVTLLPPATPT---KIVCVGRNYREHIREMGHDFG---ED-LP---KEPGLFLKGPNALARPGNPRDPWGTA 99 (264)
T ss_dssp EEEEEEGGGSCEECSCCCS---CEEEECSCBC-----------------CC---SSCCEEEECGGGEECCCBTTBHHHHS
T ss_pred cCCccccccCeEcCCccCC---eEEEEeCcHHHHHHHhccccc---CC-CC---CCCEEEEeccceEEccCCcccccCCC
Confidence 4557899999999999754 3444 5679999885421 11 23 46999999999999999
Q ss_pred CeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCc
Q 019941 88 TDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPF 167 (333)
Q Consensus 88 ~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~ 167 (333)
++|.+|.. ++.+|||+|||+||||+ ++++++++|++||+||+++||+|+||+|.++ .+|.
T Consensus 100 ~~i~~p~~--------------~~~~d~E~ELavvig~~---~~~v~~~~a~~~I~gy~~~nDvt~Rd~q~~~---~~~~ 159 (264)
T 2dfu_A 100 EPVPYPFF--------------TEELHYEGELAVVVGDR---MRHVPPEKALDHVLGYTVAVDITARDVQKKD---LQWV 159 (264)
T ss_dssp CCEEECSS--------------CSCEECCEEEEEEECSC---BSSCCHHHHGGGEEEEEEEECCEEHHHHHHS---SSSH
T ss_pred cceecCCC--------------CCceeEEEEEEEEECCC---CCCCCHHHHHHHhhEeEEEEEeEhhhhhhcc---CCCc
Confidence 88888875 67899999999999999 8999999999999999999999999999875 4899
Q ss_pred cccccCCc--cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHH
Q 019941 168 LGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQ 245 (333)
Q Consensus 168 ~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~ 245 (333)
++|+||++ +|||+++ +++ +.++.|+++| ||+++|++++++|+|++.+
T Consensus 160 ~aK~~d~~~plGp~i~~--~~d---------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~~ 208 (264)
T 2dfu_A 160 RAKSADKFLPLGPWLET--DLN---------------------PQDTWVRTYV--------NGTLRQEGHTSQMIFSVAE 208 (264)
T ss_dssp HHHCSTTCEEEEEEEES--SCC---------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHH
T ss_pred eeecCCCCEEECCcCcc--ccC---------------------CCccEEEEEE--------CCEEEEEecHHHhhcCHHH
Confidence 99999995 9999998 453 3568888888 9999999999999999999
Q ss_pred HHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeecee
Q 019941 246 QLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCS 325 (333)
Q Consensus 246 lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~ 325 (333)
+|+|+ |++++|+|||||+||||+|++ +|++||+|+++ |+ |+|+|+
T Consensus 209 lia~l-s~~~tL~pGDvI~TGTp~Gvg--------------------------~l~~GD~v~~~--i~------glG~l~ 253 (264)
T 2dfu_A 209 ILSYI-STFMTLEPLDVVLTGTPEGVG--------------------------ALRPGDRLEVA--VE------GVGTLF 253 (264)
T ss_dssp HHHHH-HTTSCBCTTCEEECCCCSCCC--------------------------BCCTTCEEEEE--ET------TTEEEE
T ss_pred HHHHH-hcCCCcCCCCEEEeCCCCCcc--------------------------ccCCCCEEEEE--Ee------CcEEEE
Confidence 99999 799999999999999999874 36899999999 56 899999
Q ss_pred eeEeeCC
Q 019941 326 GKIVPST 332 (333)
Q Consensus 326 ~~vv~~~ 332 (333)
|+|+++.
T Consensus 254 ~~v~~~~ 260 (264)
T 2dfu_A 254 TLIGPKE 260 (264)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9998754
No 8
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=7.2e-50 Score=372.15 Aligned_cols=216 Identities=22% Similarity=0.320 Sum_probs=180.2
Q ss_pred ccCCccccCCcEEeCCcccCCcceEEec---HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCC
Q 019941 20 RQKSLVPMGKVEMLLPMEIGDYTDFFSS---MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 96 (333)
Q Consensus 20 ~~~~~~~~~~v~ll~Pv~~~~~~~~~~~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~ 96 (333)
..+..++++++++++|+.+. +.++.| ++|++|++.. .| ..|++|+|++++++++|++|.+|..
T Consensus 25 ~~~~~~~~~~~~~l~P~~p~--~i~~vG~ny~~h~~e~g~~--------~P---~~P~~f~k~~~~~~~~g~~i~~p~~- 90 (246)
T 1wzo_A 25 EAGEAHRPEDVTWLLPFTPG--KILGVALNYADHAEELGLS--------RP---EEPALFWKPNTSLLPHKGVVLYPKG- 90 (246)
T ss_dssp TTCCEECGGGSEECCSSCCC--CEEEEESCBC------CCC--------CC---SSCEEEEECGGGEECTTCCEEECTT-
T ss_pred CCCCccccccCEEcCCCCCC--eEEEEEcChHHHHHHhCCC--------CC---CCCEEEEECcccEeCCCCeEECCCC-
Confidence 34567899999999999543 233334 5599998742 34 4699999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc-
Q 019941 97 FAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT- 175 (333)
Q Consensus 97 ~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~- 175 (333)
+..+|||+|||+||||+ ++++++++|++||+||+++||+|+||+|...+ .+|.++|+||++
T Consensus 91 -------------~~~~~~E~ELavvig~~---~~~v~~~~a~~~i~g~~~~nD~s~rd~q~~~~--~~~~~~K~~d~~~ 152 (246)
T 1wzo_A 91 -------------ARFVHYEVELAVVVGRP---MKRVRAKDALDYVLGYTIANDLVARDYVTNTF--RPPIRAKGRDTFL 152 (246)
T ss_dssp -------------CSCEECCEEEEEEECSC---BSSCCHHHHGGGEEEEEEEECCEEGGGC------CCCHHHHCSTTCE
T ss_pred -------------CCceeEEEEEEEEECCC---CCCCCHHHHHhheeEEEEEEECchHHhccccc--CCceeeccCCCCE
Confidence 67899999999999999 89999999999999999999999999998764 479999999995
Q ss_pred -cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcC
Q 019941 176 -LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTING 254 (333)
Q Consensus 176 -lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~ 254 (333)
+|||++ ++++.+ +.++.++++| ||+++|++++++|+|++.++|+|+ |++
T Consensus 153 ~lGp~i~-~~~i~d--------------------~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~~lia~l-s~~ 202 (246)
T 1wzo_A 153 PLGPFLV-VEEVED--------------------PQDLWLRAYV--------NGELRQEGHTSRMLYSVAELLEFI-SEF 202 (246)
T ss_dssp EEEEEEE-CSCCSC--------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTT
T ss_pred EECCcCc-HHHcCC--------------------CcccEEEEEE--------CCEEEEeeCHHHhCCCHHHHHHHH-hCC
Confidence 999999 787743 3568888888 999999999999999999999999 799
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeC
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~ 331 (333)
++|+|||||+||||+|+++ |++||+|+++ |+ |||+++|+|+.+
T Consensus 203 ~tL~pGDvI~TGTp~gvg~--------------------------l~~GD~v~~~--i~------glG~l~~~v~~~ 245 (246)
T 1wzo_A 203 MTLEPYDVLLTGTPKGISQ--------------------------VRPGDVMRLE--IE------GLGALENPIEEE 245 (246)
T ss_dssp SCBCTTCEEECCCCCCSCE--------------------------ECTTCEEEEE--ET------TSCEEEEEEEEC
T ss_pred CCcCCCCEEEeCCCCCceE--------------------------CCCCCEEEEE--Ec------CcEEEEEEEEeC
Confidence 9999999999999998743 6899999999 56 899999999864
No 9
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=100.00 E-value=6.8e-50 Score=367.30 Aligned_cols=207 Identities=19% Similarity=0.257 Sum_probs=175.8
Q ss_pred cccCCcEEeCCcccCCcceEEe----cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCC
Q 019941 25 VPMGKVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPS 100 (333)
Q Consensus 25 ~~~~~v~ll~Pv~~~~~~~~~~----~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~ 100 (333)
+++.+-.+..|+ .+++| |.+|++|++.. .| +.|++|+|++++++++|++|.+|..
T Consensus 8 ~~~~~~~~~~p~-----~ki~~vG~Ny~~h~~e~g~~--------~p---~~P~~F~K~~~~~~~~g~~i~~p~~----- 66 (221)
T 3s52_A 8 RDWQGALLDFPV-----NKVVCVGSNYAEHIKEMGST--------AS---VEPVLFIKPETALCDIRQPVSIPKD----- 66 (221)
T ss_dssp BBTTSCBCCSCC-----CEEEEEESCBHHHHHHTTCC--------CC---SSCEEEEEEGGGEEETTSCBCCCSS-----
T ss_pred EeeCCCcccCCC-----CcEEEEeCCHHHHHHHhCCC--------CC---CceEEEEcCCceEeCCCCeEECCCC-----
Confidence 455554444443 24555 46799998752 34 5799999999999999999999986
Q ss_pred CCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhc-CCCCccccccCCc--cC
Q 019941 101 GNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LS 177 (333)
Q Consensus 101 ~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~-~~~~~~aK~~dt~--lG 177 (333)
++.+|||+|||+||||+ +++++++||++||+||+++||||+||+|.+.+. .++|.++|+||++ +|
T Consensus 67 ---------~~~~d~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nDvs~Rd~q~~~~~~~~~~~~aK~~d~~~plG 134 (221)
T 3s52_A 67 ---------FGSVHHEIELAVLIGTP---LKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPIS 134 (221)
T ss_dssp ---------SSCEEECEEEEEEECSC---BSSCCHHHHHHHEEEEEEEECCEEHHHHHHHHHHTCCSHHHHSSTTCEEEC
T ss_pred ---------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEEEEEEEeEHHHHhhhhhccCCCcceeecCCCCcccc
Confidence 67999999999999999 899999999999999999999999999987543 4689999999996 99
Q ss_pred CccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCccc
Q 019941 178 PWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNL 257 (333)
Q Consensus 178 P~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL 257 (333)
||+ +.+++.+ +.++.++++| ||+++|++++++|+|++.++|+|+ |+++||
T Consensus 135 p~i-~~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~mi~~~~~lia~l-S~~~tL 184 (221)
T 3s52_A 135 GFI-PVAEFGD--------------------AQQADLSLTI--------NGEIRQQGNTRDMITPIIPLISYM-SRFFTL 184 (221)
T ss_dssp CBE-EHHHHCC--------------------GGGCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HHHSCB
T ss_pred Cce-ehhhcCC--------------------ccceEEEEEE--------CCEEEEEEcHHHccCCHHHHHHHH-hCCCCc
Confidence 998 5677643 3678888888 999999999999999999999999 799999
Q ss_pred CCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEe
Q 019941 258 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 329 (333)
Q Consensus 258 ~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv 329 (333)
+|||||+||||+|+++ |++||+|+++ |+ |+| ++|+|+
T Consensus 185 ~pGDvI~TGTp~Gvg~--------------------------l~~GD~v~~~--i~------glG-l~~~v~ 221 (221)
T 3s52_A 185 RAGDIVLTGTPQGVGP--------------------------MQSGDMLKIM--LN------GKT-VNTRII 221 (221)
T ss_dssp CTTCEEECCCCSCCEE--------------------------ECTTCEEEEE--ET------TEE-EEEEBC
T ss_pred CCCCEEEeCCCCccee--------------------------cCCCCEEEEE--Ee------CeE-EEEEEC
Confidence 9999999999999754 5888888888 55 788 888874
No 10
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=100.00 E-value=5.8e-47 Score=348.40 Aligned_cols=198 Identities=20% Similarity=0.294 Sum_probs=164.9
Q ss_pred ceEEe-c---HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeE
Q 019941 42 TDFFS-S---MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL 117 (333)
Q Consensus 42 ~~~~~-~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ 117 (333)
++++| | .+|++|++.. .| ..|++|.|++++++++|++|.+|.. ++.+|||+
T Consensus 19 ~ki~~vG~ny~~h~~e~g~~--------~P---~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ 73 (225)
T 1saw_A 19 KNIVCVGRNYADHVREMRSA--------VL---SEPVLFLKPSTAYAPEGSPILMPAY--------------TRNLHHEL 73 (225)
T ss_dssp CEEEEESCCBC----------------------CCCCEEEEEGGGEEETTSCEECCTT--------------CSCEEECE
T ss_pred CeEEEEEeCcHHHHHHhCCC--------CC---CCCEEEECCcceeeCCCCeEECCCC--------------CCCccEEE
Confidence 35555 4 5698888742 34 3599999999999999999999976 67899999
Q ss_pred EEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhc-CCCCccccccCCc--cCCccccccccCCccCCCC
Q 019941 118 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSP 194 (333)
Q Consensus 118 ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~-~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~ 194 (333)
||++||||. ++++++++|++||+||+++||+|+||+|.+.+. .++|+++|+|+++ +|||+ +.+++.+
T Consensus 74 ELavvig~~---~~~v~~~~a~~~i~g~~~~nDvt~r~~q~~~~~~~~~~~~aK~~d~~~plGp~v-~~~~~~d------ 143 (225)
T 1saw_A 74 ELGVVMGKR---CRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFV-PKEKIPD------ 143 (225)
T ss_dssp EEEEEESSC---BCSCCTTTGGGSEEEEEEEECCEEHHHHHHHHHHTCCSHHHHCSTTCEEECCCE-ETTSCSC------
T ss_pred EEEEEECCC---CCCCCHHHHHHhheEEEecccccHHHHhhhhhccCCCceEeecCCCCEecCCcc-cHHHcCC------
Confidence 999999998 999999999999999999999999999998643 4689999999996 99996 6666632
Q ss_pred CCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccC
Q 019941 195 KQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE 274 (333)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~ 274 (333)
+.++.++++| ||+++|++++++|+|++.++|+|+ |++++|+|||||+||||+|+++
T Consensus 144 --------------~~~l~l~l~v--------NGe~~q~g~~~~mi~~~~~lia~l-s~~~tL~~GDvI~TGTp~Gvg~- 199 (225)
T 1saw_A 144 --------------PHKLKLWLKV--------NGELRQEGETSSMIFSIPYIISYV-SKIITLEEGDIILTGTPKGVGP- 199 (225)
T ss_dssp --------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCEE-
T ss_pred --------------CceeEEEEEE--------CCEEEEEEcHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCcee-
Confidence 3678888888 999999999999999999999999 7999999999999999998753
Q ss_pred CCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeC
Q 019941 275 SLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331 (333)
Q Consensus 275 ~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~ 331 (333)
|++||+|+++ |+ |+|+++|+|+++
T Consensus 200 -------------------------l~~Gd~v~~~--i~------glG~l~~~v~~~ 223 (225)
T 1saw_A 200 -------------------------VKENDEIEAG--IH------GLVSMTFKVEKP 223 (225)
T ss_dssp -------------------------ECTTCEEEEE--ET------TTEEEEEEEECC
T ss_pred -------------------------CCCCCEEEEE--EC------CcEEEEEEEEEe
Confidence 5888888888 56 899999999865
No 11
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=100.00 E-value=5.6e-47 Score=378.01 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=181.2
Q ss_pred CCccccCCcEEeCCcccCCcceEEe-c---HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCC
Q 019941 22 KSLVPMGKVEMLLPMEIGDYTDFFS-S---MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 97 (333)
Q Consensus 22 ~~~~~~~~v~ll~Pv~~~~~~~~~~-~---~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~ 97 (333)
...++++++++++|+. . +++| | .+|++|++.. .| +.|++|+|++++++++|++|.+|..
T Consensus 207 ~~~~~~~~~~~~~p~~-~---~i~~vG~ny~~h~~e~g~~--------~p---~~P~~f~k~~~~~~~~g~~i~~p~~-- 269 (429)
T 1gtt_A 207 REVTTRKSFPTLPHPH-G---TLFALGLNYADHASELEFK--------PP---EEPLVFLKAPNTLTGDNQTSVRPNN-- 269 (429)
T ss_dssp GGCCSCCCCCCCSSSC-S---CEEEESSCBCCC----------------C---CSCCEEEECGGGEECTTEEEEECTT--
T ss_pred ccccccccceecCCCC-C---cEEEEEeCHHHHHHHhCCC--------CC---CCCEEEEcCcceEeCCCCeEEcCCC--
Confidence 3567999999999998 3 3444 5 5699888742 33 4699999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhh-hhhhhhcCCCCccccccCCc-
Q 019941 98 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD-IQAWEYVPLGPFLGKSFGTT- 175 (333)
Q Consensus 98 ~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd-~q~~~~~~~~~~~aK~~dt~- 175 (333)
+..+|||+|||+||||+ ++++++++|++||+||+++||+|+|| +|... .+|.++|+||++
T Consensus 270 ------------~~~~~~E~Elavvig~~---~~~v~~~~a~~~i~g~~~~nD~t~Rd~lq~~~---~~w~~~K~~d~~~ 331 (429)
T 1gtt_A 270 ------------IEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDYAIRDYLENYY---RPNLRVKSRDGLT 331 (429)
T ss_dssp ------------CSCEECCEEEEEEECSC---BSSCCTTTGGGGEEEEEEEECCEEGGGCCSSS---SSCHHHHSCTTCE
T ss_pred ------------CCCccEEEEEEEEECCC---CCCCCHHHHHhhheEEEEEEEcccchhhhhhc---CCccccccCCCCE
Confidence 67899999999999999 99999999999999999999999999 48643 479999999996
Q ss_pred -cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcC
Q 019941 176 -LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTING 254 (333)
Q Consensus 176 -lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~ 254 (333)
+|||+++++++.+ +.++.++++| ||+++|++++++|+|++.++|+|+ |++
T Consensus 332 ~lGp~iv~~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~~~~mi~~~~~lia~l-s~~ 382 (429)
T 1gtt_A 332 PMLSTIVPKEAIPD--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEF 382 (429)
T ss_dssp EBCSCCEEGGGCSC--------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTT
T ss_pred EECCcccCHHHcCC--------------------CccceEEEEE--------CCEEEEEeCHHHcCCCHHHHHHHH-hCC
Confidence 9999999998853 3568899988 999999999999999999999999 799
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeC
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~ 331 (333)
++|+|||||+||||+|++ +|++||+|+++ |+ |||+|+|+|+++
T Consensus 383 ~tL~~GDvI~TGTp~gvg--------------------------~l~~GD~v~~~--i~------glG~l~~~v~~~ 425 (429)
T 1gtt_A 383 MTLNPGDMIATGTPKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSE 425 (429)
T ss_dssp SCBCTTCEEECCCCSCCC--------------------------BCCTTCEEEEE--ET------TTEEEEEEEEEH
T ss_pred CCcCCCCEEEcCCCCCCe--------------------------ECCCCCEEEEE--Ec------CcEEEEEEEEec
Confidence 999999999999999863 57999999999 56 899999999864
No 12
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=100.00 E-value=2e-46 Score=357.26 Aligned_cols=220 Identities=24% Similarity=0.253 Sum_probs=171.0
Q ss_pred CCccccCCcEEeCCcccCCcceEEec---HH----HHHHhccccCCCCCCCCCC--CCCCceeeecC-CceeeeCCCeee
Q 019941 22 KSLVPMGKVEMLLPMEIGDYTDFFSS---MH----HAKNCGTIFRGPANAVPAN--WFHLPIAYHGR-ASSVVISGTDIV 91 (333)
Q Consensus 22 ~~~~~~~~v~ll~Pv~~~~~~~~~~~---~~----H~~~~~~~~~~~~~~~~p~--~~~~P~~f~k~-~ssl~~~g~~i~ 91 (333)
+..++++++++++|+.+++ .+|.| .+ |++|++..-.+.+ .++. ....|.+|+|+ +++++++|++|.
T Consensus 57 ~~~~~~~~v~ll~Pv~p~~--i~~vG~NY~~~~~~h~~e~~~~~~~~~--~~~~~~~~~~P~~F~k~~~~~~~g~~~~i~ 132 (293)
T 2q18_X 57 LKSFQINDIRITKPIDPPE--VWGSGISYEMARERYSEENVAKILGKT--IYEKVYDAVRPEIFFKATPNRCVGHGEAIA 132 (293)
T ss_dssp HHHSEETTEEECCSSCCSC--EEEEESCBC---------CCCEETTEE--HHHHHHHSSSCEEEEEECGGGEECTTSCEE
T ss_pred CCCCCcccceEeCCcCcce--EEEEEechhhhhHHHHHHhcccccccc--ccccccCCCCCEEEECCCCCeEecCCCEEE
Confidence 3457899999999998543 33334 33 6666651000000 0000 02468999996 699999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccc
Q 019941 92 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKS 171 (333)
Q Consensus 92 ~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~ 171 (333)
+|.. ++++|||+|||+||||+ ++ |+||+++||+|+||+|... +.+|.++|+
T Consensus 133 ~p~~--------------~~~~d~E~ELavvIg~~---~~----------i~Gyt~~nDvs~Rd~q~~~--~~~~~~aK~ 183 (293)
T 2q18_X 133 VRSD--------------SEWTLPEPELAVVLDSN---GK----------ILGYTIMDDVSARDLEAEN--PLYLPQSKI 183 (293)
T ss_dssp ECTT--------------CSCEECCEEEEEEECTT---CC----------EEEEEEEEECEEHHHHHHC--GGGHHHHHC
T ss_pred cCCC--------------CCCcceEEEEEEEECCC---Cc----------CceEEEEEEeEeehhhhhc--ccCcccccc
Confidence 9976 77899999999999998 63 9999999999999999864 234669999
Q ss_pred cCCc--cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEec--chhhhccCHHHHH
Q 019941 172 FGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS--NFKYLYWTLTQQL 247 (333)
Q Consensus 172 ~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~--~t~~mi~~~~~lI 247 (333)
||++ +|||++++|++.+ +.++.|+|+|++ ||+++|++ +|++|+|+++++|
T Consensus 184 ~d~~~plGP~ivt~dei~d--------------------~~~l~i~l~v~~------NGe~~q~g~~~t~~mi~~~~~li 237 (293)
T 2q18_X 184 YAGCCAFGPVIVTSDEIKN--------------------PYSLDITLKIVR------EGRVFFEGSVNTNKMRRKIEEQI 237 (293)
T ss_dssp STTCEEEEEEEECGGGCSC--------------------TTSCEEEEEEEE------TTEEEEEEEEEGGGBCSCHHHHH
T ss_pred CCCCEEECCcEeCHHHcCC--------------------cceeEEEEEEEE------CCEEEEECCCCHHHhccCHHHHH
Confidence 9996 9999999988753 356888888755 99999997 6999999999999
Q ss_pred HHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeee
Q 019941 248 AHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGK 327 (333)
Q Consensus 248 a~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~ 327 (333)
+|+ |+++||+|||||+||| |.++ ....||++||+|+++ |+ |||+|+|+
T Consensus 238 ~~l-s~~~tL~pGDvI~TGT--g~~p---------------------~~~~~l~~GD~v~~~--i~------glG~l~n~ 285 (293)
T 2q18_X 238 QYL-IRDNPIPDGTILTTGT--AIVP---------------------GRDKGLKDEDIVEIT--IS------NIGTLITP 285 (293)
T ss_dssp HHH-HTTCCCCTTEEEECCC--SCCC---------------------CTTCCCCTTCEEEEE--ET------TTEEEEEE
T ss_pred HHH-HcCCCCCCCCEEECCC--CCCC---------------------CCCcccCCCCEEEEE--Ec------CcEEEEEE
Confidence 999 7999999999999999 2111 124799999999999 56 89999999
Q ss_pred EeeCC
Q 019941 328 IVPST 332 (333)
Q Consensus 328 vv~~~ 332 (333)
|+..+
T Consensus 286 v~~~~ 290 (293)
T 2q18_X 286 VKKRR 290 (293)
T ss_dssp EEECC
T ss_pred EEeee
Confidence 99765
No 13
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=100.00 E-value=2.4e-44 Score=337.63 Aligned_cols=198 Identities=21% Similarity=0.253 Sum_probs=157.4
Q ss_pred CCcccCCcceEEe-cH---HHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeC-----------------------
Q 019941 34 LPMEIGDYTDFFS-SM---HHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVIS----------------------- 86 (333)
Q Consensus 34 ~Pv~~~~~~~~~~-~~---~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~----------------------- 86 (333)
.|+..+ ++++| |+ +|++|++.. .| +.|++|+|++++++++
T Consensus 4 ~~~~~~--~ki~cvG~Ny~~H~~E~g~~--------~p---~~P~~F~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (259)
T 1nkq_A 4 NYLKAA--RKIICIGRNYAAHIKELNNS--------TP---KQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 70 (259)
T ss_dssp GGGGGC--CCEEEECSCBCSSGGGGGC---------------CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTS
T ss_pred ccCCCC--CEEEEEecCHHHHHHHhCCC--------CC---CCCEEEeeChhhEeccccccccccccccccccccccccc
Confidence 455544 35555 54 588888742 33 4699999999999998
Q ss_pred -C-CeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCH---HHHhhceeEEEEEeecchhhhhhhhh
Q 019941 87 -G-TDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDV---NEAADHIFGVMLMNDWSARDIQAWEY 161 (333)
Q Consensus 87 -g-~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~---eeA~~~I~Gytl~ND~SaRd~q~~~~ 161 (333)
+ ++|.+|.. + .+|||+|||+||||+ ++++++ ++|++||+||+++||||+||+|.+++
T Consensus 71 ~~~~~I~~p~~--------------~-~~d~E~ELavvIg~~---~~~v~~~t~~ea~~~I~g~~~~nDvt~Rd~q~~~~ 132 (259)
T 1nkq_A 71 TNPGPIFIPRG--------------V-KVHHEIELALIVSKH---LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAK 132 (259)
T ss_dssp CCBCCEEECTT--------------C-CEEECEEEEEEECSC---BCSCCCCCGGGTGGGEEEEEEEECCEEHHHHHHHH
T ss_pred CCCCcEEcCCC--------------C-cccEEEEEEEEECCC---CCCCCcCCHHHHHhhhhEEEEEEeeeHHHhhhhhh
Confidence 4 88888865 4 699999999999999 888877 99999999999999999999998654
Q ss_pred c-CCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCccccccCC-ceeeEEEEEEeeeCCCCCCeEEEecchh
Q 019941 162 V-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKIS-KNYDISLEVQIKPAGKEDSCVVTRSNFK 237 (333)
Q Consensus 162 ~-~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~l~V~~~~~~~~NGe~~q~~~t~ 237 (333)
. .++|.++|+||++ +|||+ +.+++.+.+. +. .++.++++| ||+++|+++++
T Consensus 133 ~~~~~~~~aK~~d~~~p~Gp~V-~~~~~~d~~~----------------dl~~~l~l~l~v--------NGe~~q~g~t~ 187 (259)
T 1nkq_A 133 KKGLPWTISKGFDTFMPISAIV-SREKFSSYKS----------------NLQDIFRVKCSV--------NGQLRQDGGTN 187 (259)
T ss_dssp HHTCCSHHHHHSTTCEEBCCCE-EGGGGGGGTT----------------CCTTTEEEEEEE--------TTEEEEEEEGG
T ss_pred hcCCCcceeeccCcCCCcceEE-ECccccCccc----------------ccccceEEEEEE--------CCEEEEEEcHH
Confidence 2 5789999999995 99997 4566643211 12 568888888 99999999999
Q ss_pred hhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCcc
Q 019941 238 YLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK 288 (333)
Q Consensus 238 ~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g 288 (333)
+|+|++.++|+|+ |++++|+|||||+||||+|++++++||.++++++|+|
T Consensus 188 ~m~~~~~~Lia~l-S~~~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~glG 237 (259)
T 1nkq_A 188 LMLHPLHKILQHI-STMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNN 237 (259)
T ss_dssp GBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCEEECTTCEEEEEEEETT
T ss_pred HcCCCHHHHHHHH-hCCCCcCCCCEEEeCCCCCcEecCCCCEEEEEEEcCC
Confidence 9999999999999 7999999999999999999865544444444444443
No 14
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=100.00 E-value=1.1e-43 Score=354.34 Aligned_cols=187 Identities=20% Similarity=0.174 Sum_probs=158.6
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCC
Q 019941 47 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 126 (333)
Q Consensus 47 ~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~ 126 (333)
|.+|++|++..+........| +.|++|+|++++++++|++|.+|.. ++ +|||+|||+||||+
T Consensus 12 y~~H~~e~~~~~~~~~~~~~p---~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~-~~~E~Elavvig~~ 73 (429)
T 1gtt_A 12 HRSQLDAWQEAFQQSPYKAPP---KTAVWFIKPRNTVIGCGEPIPFPQG--------------EK-VLSGATVALIVGKT 73 (429)
T ss_dssp BHHHHHHHTTGGGSTTTCSCC---SSCEEEEECGGGEECTTCCEEECTT--------------CC-EECCEEEEEEECSC
T ss_pred HHHHHHHhhccccccccCCCC---CCCEEEEcCcceEEcCCCeeecCCC--------------CC-ccEEEEEEEEECCC
Confidence 567999998643221111123 6799999999999999999999975 56 99999999999999
Q ss_pred CCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCc--cCCccccccccCCccCCCCCCCCCCCccc
Q 019941 127 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 204 (333)
Q Consensus 127 ~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~ 204 (333)
++++++++|++||+||+++||+|+||+|.. .+|.++|+||++ +||| +++.+
T Consensus 74 ---~~~v~~~~a~~~i~gy~~~nD~s~Rd~~~~----~~~~~aK~fd~~~~lGp~----~~~~d---------------- 126 (429)
T 1gtt_A 74 ---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGET----VALSN---------------- 126 (429)
T ss_dssp ---BSSCCGGGGGGGEEEEEEEECCBSCCCCSS----SCCHHHHCSTTCEEBCCC----BCCSC----------------
T ss_pred ---CCCCCHHHHHhHhhEEEEEEEeeehhhhcc----CCccccCCCCCCEEECCh----hhcCC----------------
Confidence 999999999999999999999999997643 378999999996 9999 45532
Q ss_pred cccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEe
Q 019941 205 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 284 (333)
Q Consensus 205 ~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~ 284 (333)
+.++.|+++| ||+++|++++++|+|++.++|+|+ |++++|+|||||+||||+|++++++||.+++++
T Consensus 127 ----~~~l~i~~~v--------NGe~~q~g~t~~mi~~~~~li~~l-s~~~tL~~GDvI~TGTp~g~~~l~~GD~v~~~i 193 (429)
T 1gtt_A 127 ----VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQARVEIQPGDRVRVLA 193 (429)
T ss_dssp ----CTTCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCCEECTTCEEEEEE
T ss_pred ----ccccEEEEEE--------CCEEEEeCCHHHhcCCHHHHHHHH-hcCCCcCCCCEEEEeccCcceecCCCCEEEEEE
Confidence 3568888888 999999999999999999999999 799999999999999999987777777777777
Q ss_pred cCcccee
Q 019941 285 NGQKPLS 291 (333)
Q Consensus 285 ~g~g~l~ 291 (333)
+|+|.++
T Consensus 194 ~glG~l~ 200 (429)
T 1gtt_A 194 EGFPPLE 200 (429)
T ss_dssp TTSCCEE
T ss_pred CCcceeE
Confidence 7766655
No 15
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=100.00 E-value=2.5e-37 Score=290.76 Aligned_cols=178 Identities=13% Similarity=0.060 Sum_probs=144.6
Q ss_pred CceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeec
Q 019941 72 LPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 151 (333)
Q Consensus 72 ~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~ 151 (333)
.|.++.++.++++++|++|.+|.. ..+|||+||||||||+++ +++++++||++||+||+++||+
T Consensus 77 ~P~~~~l~~~~~~~~g~~i~~p~~---------------~~~~~E~ELa~vig~~l~-~~~vt~~~a~~~v~g~~~~~ei 140 (267)
T 2eb4_A 77 EPDYGALLDDMFFHDGSDIPTDRF---------------IVPRIEVELAFVLAKPLR-GPNCTLFDVYNATDYVIPALEL 140 (267)
T ss_dssp SCEEEEEEGGGEECTTEEECGGGC---------------SSCEEEEEEEEEESSCBC-CSSCCHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEEechheecCCCeecCCcc---------------CcccEeeEEEEEECCCCC-CCCCCHHHHHHhhceEEEEEEe
Confidence 355556667899999999998864 368999999999999975 6899999999999999999999
Q ss_pred chhhhhhhhhc-----CCCCccccc-cCCc--cCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeC
Q 019941 152 SARDIQAWEYV-----PLGPFLGKS-FGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 223 (333)
Q Consensus 152 SaRd~q~~~~~-----~~~~~~aK~-~dt~--lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~ 223 (333)
++|+++.|... +..|..+|+ ++++ +|||++++++++ +.++.++|+|
T Consensus 141 ~d~r~~~~~~~~~~~~~~~~~~Ad~~~~~~~~lGp~~v~~~~~d---------------------~~~l~~~l~v----- 194 (267)
T 2eb4_A 141 IDARCHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKPDELD---------------------LRWISALMYR----- 194 (267)
T ss_dssp ECCSBCCC------CCHHHHHHHTGGGEEEEEECSCCBCTTSSC---------------------GGGCEEEEEE-----
T ss_pred ecccccccccccccccCccceeecccccccEEECCCcCCcccCC---------------------hhhCeEEEEE-----
Confidence 99888877541 223455664 4443 999999988764 3678999998
Q ss_pred CCCCCeEEEecchhhhccCHHHHHHHHH----hcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCC
Q 019941 224 GKEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKF 299 (333)
Q Consensus 224 ~~~NGe~~q~~~t~~mi~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~ 299 (333)
||+++|+|++++|+|++.++|+|++ +++++|+|||||+||||.|+ .+
T Consensus 195 ---NGe~~q~g~t~~ml~~p~~~i~~ls~~l~~~g~tL~~GDvI~TGT~~g~--------------------------~~ 245 (267)
T 2eb4_A 195 ---NGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRP--------------------------VP 245 (267)
T ss_dssp ---TTEEEEEEEGGGTTTSTTHHHHHHHHHHGGGTCCBCTTCEEECCCSSCC--------------------------EE
T ss_pred ---CCEEEEEecHHhcccCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCC--------------------------EE
Confidence 9999999999999999999999984 23459999999999999875 45
Q ss_pred CCCCCEEEEEEEEcCCCceeeeeceeeeE
Q 019941 300 LEDGDEVTFTGFCKGNGYTVGFGTCSGKI 328 (333)
Q Consensus 300 L~~GD~V~~~~~~~~~~~~~g~G~~~~~v 328 (333)
|++||+|+++ |+ |+|+++|++
T Consensus 246 l~~GD~v~~~--i~------glG~l~~~~ 266 (267)
T 2eb4_A 246 ARKGDTFHVD--YG------NMGSISCRF 266 (267)
T ss_dssp CCTTCEEEEE--CG------GGCEEEEEE
T ss_pred CCCCCEEEEE--Ec------CCCeEEEEE
Confidence 6788888777 55 788888776
No 16
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=100.00 E-value=4.1e-36 Score=283.05 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=152.5
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCC
Q 019941 47 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 126 (333)
Q Consensus 47 ~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIGk~ 126 (333)
+..|++++|.. .| ..|.+|.| +++++|++|.+|.. ..++||+||+|||||+
T Consensus 66 ~~~h~~e~g~~--------~P---~~~~lf~~---~~~~~g~~i~~p~~---------------~~~~~E~ELa~vig~~ 116 (270)
T 2wqt_A 66 HPKVQQQLGVD--------QP---DFGTLFAD---MCYGDNEIIPFSRV---------------LQPRIEAEIALVLNRD 116 (270)
T ss_dssp SHHHHHTTTCS--------SC---EEEEEEGG---GEEETTEEECGGGS---------------SSCEEEEEEEEEESSC
T ss_pred CHHHHHHhCCC--------CC---CEEEEech---heeCCCCeeecCcc---------------CccceeeEEEEEECCC
Confidence 56799998752 34 45788876 78999999998864 4799999999999999
Q ss_pred CCCCCCCCHHHHhh---ceeEEEEEeecchhhhhhhhhcCCCCccccccCC---ccCCccccccccCCccCCCCCCCCCC
Q 019941 127 NELGKPIDVNEAAD---HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQP 200 (333)
Q Consensus 127 ~~~g~~v~~eeA~~---~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt---~lGP~ivt~del~~~~~~~~~~~~~~ 200 (333)
++ +++++++||++ ||++|+..||.+.||+|... ....++|+.+ ++|||++++++++
T Consensus 117 ~~-g~~vt~~~a~~ai~~v~~~~ei~D~~~~~~~~k~----~d~~aDn~s~~~~~lGp~~v~~~~~d------------- 178 (270)
T 2wqt_A 117 LP-ATDITFDELYNAIEWVLPALEVVGSRIRDWSIQF----VDTVADNASCGVYVIGGPAQRPAGLD------------- 178 (270)
T ss_dssp BC-CTTCCHHHHHTTEEEEEEEEEEECCSBGGGCCCH----HHHHHTGGGCCEEEECBCCBCSTTCC-------------
T ss_pred CC-CCCCCHHHHHHhhCeEEEEEEEEcCcccccCCCh----hcEEccCccCCCEeECcCcCCcccCC-------------
Confidence 76 68999999998 78888999999999987211 1234555544 4999999988874
Q ss_pred CccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhc-----CcccCCCCEEEcCCCCCCccCC
Q 019941 201 LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPES 275 (333)
Q Consensus 201 ~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~-----~~tL~pGDvI~TGTp~Gv~~~~ 275 (333)
+.++.++|+| ||+++|+|++++|+|++.++|+|+ |+ +++|+|||||+||||.|+
T Consensus 179 --------~~~l~i~l~v--------NGe~~q~g~~~~ml~~p~~~v~~l-s~~l~~~g~tL~~GdvI~TGT~~g~---- 237 (270)
T 2wqt_A 179 --------LKNCAMKMTR--------NNEEVSSGRGSECLGHPLNAAVWL-ARKMASLGEPLRTGDIILTGALGPM---- 237 (270)
T ss_dssp --------CSSCEEEEEE--------TTEEEEEEEGGGTTTSHHHHHHHH-HHHHHHTTCCBCTTCEEEEEESSCC----
T ss_pred --------hhhCeEEEEE--------CCEEEEEEchhhccCCHHHHHHHH-HHHHHhcCCCcCCCCEEEcCCCCCC----
Confidence 3568888988 999999999999999999999999 45 799999999999999875
Q ss_pred CCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeC
Q 019941 276 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331 (333)
Q Consensus 276 ~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~ 331 (333)
.+|++||+|+++ |+ |||+++|+|++.
T Consensus 238 ----------------------~~l~~GD~v~~~--i~------glG~l~~~v~~~ 263 (270)
T 2wqt_A 238 ----------------------VAVNAGDRFEAH--IE------GIGSVAATFSSA 263 (270)
T ss_dssp ----------------------EECCTTCEEEEE--ET------TTEEEEEEECC-
T ss_pred ----------------------eeCCCCCEEEEE--Ec------CCceEEEEEEeC
Confidence 456888888888 55 788888888754
No 17
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=92.03 E-value=0.084 Score=48.79 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=11.3
Q ss_pred CCcEEEEEecCcccee
Q 019941 276 LGCLLELTWNGQKPLS 291 (333)
Q Consensus 276 ~Gd~~e~~~~g~g~l~ 291 (333)
+||.++++++|+|.++
T Consensus 248 ~GD~v~~~i~glG~l~ 263 (267)
T 2eb4_A 248 KGDTFHVDYGNMGSIS 263 (267)
T ss_dssp TTCEEEEECGGGCEEE
T ss_pred CCCEEEEEEcCCCeEE
Confidence 4777777777777654
No 18
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=55.87 E-value=6.9 Score=35.02 Aligned_cols=13 Identities=31% Similarity=0.207 Sum_probs=11.3
Q ss_pred CCCCCCCEEEEEE
Q 019941 298 KFLEDGDEVTFTG 310 (333)
Q Consensus 298 ~~L~~GD~V~~~~ 310 (333)
..|++||+|++++
T Consensus 197 g~l~~GD~v~~~i 209 (224)
T 3l53_A 197 GPLEVGDSLSAKL 209 (224)
T ss_dssp EECCTTCEEEEEE
T ss_pred EEcCCCCEEEEEE
Confidence 4699999999994
No 19
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=49.74 E-value=12 Score=28.70 Aligned_cols=13 Identities=23% Similarity=0.164 Sum_probs=10.7
Q ss_pred CCCCCCCCEEEEE
Q 019941 297 RKFLEDGDEVTFT 309 (333)
Q Consensus 297 ~~~L~~GD~V~~~ 309 (333)
...|++||+|++=
T Consensus 69 ~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 69 EVELCDRDVIEIV 81 (87)
T ss_dssp TSBCCSSSEEEEE
T ss_pred CcCCCCCCEEEEE
Confidence 4679999999874
No 20
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=46.93 E-value=8.5 Score=28.35 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.9
Q ss_pred CCCCCCCCEEEEE
Q 019941 297 RKFLEDGDEVTFT 309 (333)
Q Consensus 297 ~~~L~~GD~V~~~ 309 (333)
...|++||+|++=
T Consensus 47 ~~~L~dGD~veIv 59 (73)
T 2kl0_A 47 ETPVTAGDEIEIL 59 (73)
T ss_dssp TCBCCTTCEEEEE
T ss_pred cccCCCCCEEEEE
Confidence 5679999999874
No 21
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=44.59 E-value=12 Score=27.60 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=31.9
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCccceec-CCCCCCCCCCCCEEEEEE
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL-DGFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~--~~g~g~l~~-~~~~~~~L~~GD~V~~~~ 310 (333)
|.++.||+ ++|+..++.. -|..+++. ++|+-..+- .......++.||.|++.+
T Consensus 1 m~~~~G~i-v~G~V~~v~~--~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V 56 (80)
T 2k52_A 1 MDVEPGKF-YKGVVTRIEK--YGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQA 56 (80)
T ss_dssp CCCCTTCE-EEEEEEEEET--TEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEE
T ss_pred CCCCCCCE-EEEEEEEEeC--CEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEE
Confidence 45788888 5888877654 46666553 333332221 111114799999999986
No 22
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=40.22 E-value=22 Score=26.46 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=10.5
Q ss_pred CCCCCCCCEEEEE
Q 019941 297 RKFLEDGDEVTFT 309 (333)
Q Consensus 297 ~~~L~~GD~V~~~ 309 (333)
...|++||+|++=
T Consensus 51 ~~~L~dGD~IEIv 63 (78)
T 2k5p_A 51 ATTVKDGDAVEFL 63 (78)
T ss_dssp HCEECSSBCEEEC
T ss_pred cccCCCCCEEEEE
Confidence 3569999999874
No 23
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=39.98 E-value=22 Score=24.96 Aligned_cols=19 Identities=16% Similarity=-0.050 Sum_probs=14.2
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 019941 227 DSCVVTRSNFKYLYWTLTQQLAHH 250 (333)
Q Consensus 227 NGe~~q~~~t~~mi~~~~~lIa~~ 250 (333)
||+.++- . . -++.++++++
T Consensus 5 Ng~~~~~-~--~--~tv~~ll~~l 23 (64)
T 2cu3_A 5 NGEPRPL-E--G--KTLKEVLEEM 23 (64)
T ss_dssp TTEEECC-T--T--CCHHHHHHHH
T ss_pred CCEEEEc-C--C--CcHHHHHHHc
Confidence 9998864 2 1 3788999887
No 24
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=34.99 E-value=27 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=14.1
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 019941 227 DSCVVTRSNFKYLYWTLTQQLAHH 250 (333)
Q Consensus 227 NGe~~q~~~t~~mi~~~~~lIa~~ 250 (333)
||+.++-... -++.++++++
T Consensus 6 Ng~~~~~~~~----~tv~~ll~~l 25 (66)
T 1f0z_A 6 NDQAMQCAAG----QTVHELLEQL 25 (66)
T ss_dssp SSCEECCCTT----CCHHHHHHHH
T ss_pred CCEEEEcCCC----CcHHHHHHHc
Confidence 9988764321 2788999887
No 25
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=33.63 E-value=25 Score=27.99 Aligned_cols=61 Identities=25% Similarity=0.156 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEE
Q 019941 241 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 308 (333)
Q Consensus 241 ~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~ 308 (333)
+++.++|.|+..++..+ ..+++.-+-+ ..+++| +-+-++|. ..+.-+.-..-|++||+|.+
T Consensus 35 ~TV~dLl~~L~~~~~~~-r~~lf~~~g~---~~lrpg--IlVLVNg~-d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 35 TNLNGLVQLLKTNYVKE-RPDLLVDQTG---QTLRPG--ILVLVNSC-DAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp CCHHHHHHHHTTTTCCS-CHHHHBCSSS---SSBCTT--EEEEESSS-BHHHHTSSCCCCCSSCEEEE
T ss_pred ccHHHHHHHHHHHcccc-chhhEecCCC---cccCCC--eEEEECCe-eeeccCCcccCCCCcCEEEE
Confidence 68999999995444455 3344432211 125556 33445542 11111223456999999876
No 26
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.00 E-value=61 Score=25.91 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=13.9
Q ss_pred CCCCCCCCCCEEEEEE
Q 019941 295 FTRKFLEDGDEVTFTG 310 (333)
Q Consensus 295 ~~~~~L~~GD~V~~~~ 310 (333)
....|+++||.|.|+.
T Consensus 49 Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 49 RKNIWIKRGDFLIVDP 64 (111)
T ss_dssp CSCCCCCSSCEEEEEE
T ss_pred cccEEEcCCCEEEEEe
Confidence 3489999999999994
No 27
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=32.75 E-value=28 Score=26.22 Aligned_cols=31 Identities=13% Similarity=-0.080 Sum_probs=20.2
Q ss_pred CCcEEEEEecCccceecCCCCCCCCCCCCEEEEEEE
Q 019941 276 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 311 (333)
Q Consensus 276 ~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~~~ 311 (333)
.|..+.+.+.|.- +....|+.+||.|.++.+
T Consensus 35 nG~~~~c~i~GK~-----Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 35 NGHKVLAHISGKM-----RQHYIRILPEDRVVVELS 65 (79)
T ss_dssp TSCEEEEEECHHH-----HHTTCCCCTTCEEEEEEE
T ss_pred CCCEEEEEeCcce-----ecCCccCCCCCEEEEEEC
Confidence 3444555554432 245678999999999954
No 28
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=31.90 E-value=63 Score=27.72 Aligned_cols=51 Identities=22% Similarity=0.153 Sum_probs=29.4
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCc---cceec---C---CCCCCCCCCCCEEEEEE
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQ---KPLSL---D---GFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~---g~l~~---~---~~~~~~L~~GD~V~~~~ 310 (333)
+..+.||+|. |.... ..++...+.+... +.|.. . .+...+|++||.|..++
T Consensus 3 Y~P~~gDvVi-G~V~~----v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV 62 (175)
T 2ja9_A 3 YIPSVNDFVI-GVIIG----TFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARV 62 (175)
T ss_dssp CCCCTTCEEE-EEEEE----ECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEE
T ss_pred ccCCCcCEEE-EEEEE----EECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEE
Confidence 4567778773 23222 2345555555541 11221 1 35688999999999886
No 29
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=26.16 E-value=37 Score=29.92 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=32.2
Q ss_pred CcccCCCCEEEcCCCCCCccCCCCcEEEEE----------ecCcccee-c----CC--CCCCCCCCCCEEEEEE
Q 019941 254 GCNLRSGDLLGTGTISGPEPESLGCLLELT----------WNGQKPLS-L----DG--FTRKFLEDGDEVTFTG 310 (333)
Q Consensus 254 ~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~----------~~g~g~l~-~----~~--~~~~~L~~GD~V~~~~ 310 (333)
....+.||+| +|+...+.. .|-.+++. ++|+-..+ + .. +...+|++||.|++.+
T Consensus 76 ~y~p~vGDvV-~G~V~~v~~--~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akV 146 (209)
T 2nn6_I 76 QLLPDVGAIV-TCKVSSINS--RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKV 146 (209)
T ss_dssp CCCCCTTCEE-EEEEEEECS--SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEE
T ss_pred cCCCCCCCEE-EEEEEEEEC--ceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEE
Confidence 3578999988 566655533 34444431 23433221 1 11 3467899999999886
No 30
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=25.84 E-value=31 Score=26.75 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=34.0
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCccceec-C----CCCCCCCCCCCEEEEEE
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL-D----GFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~--~~g~g~l~~-~----~~~~~~L~~GD~V~~~~ 310 (333)
..++.||+ ++|+..++.. -|..+++. ++|+-..+- . ..+...++.||.|++.+
T Consensus 27 ~~~~~G~i-v~G~V~~v~~--~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V 86 (109)
T 2khj_A 27 ALNKKGAI-VTGKVTAVDA--KGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 86 (109)
T ss_dssp TTCCSSSE-EEEEEEEECS--SCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEE
T ss_pred hcCCCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEE
Confidence 46899997 5788877654 46555553 344433321 1 13455799999999986
No 31
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.10 E-value=31 Score=27.25 Aligned_cols=64 Identities=30% Similarity=0.367 Sum_probs=39.1
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec--C-------CCCCCCCCCCCEEEEEEEEc--CCCceeeee
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL--D-------GFTRKFLEDGDEVTFTGFCK--GNGYTVGFG 322 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~--~-------~~~~~~L~~GD~V~~~~~~~--~~~~~~g~G 322 (333)
..|+.|+++ .|+..++.. .|..|++...+.+-+-. . ..+...++.||.|++.+ +. .+.+.+.|-
T Consensus 17 ~~l~~G~i~-~G~V~~v~~--fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV-~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 17 EALKPGMLL-TGTVSSLED--HGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIV-EKVKGNGGVVSLS 91 (119)
T ss_dssp TTCCTTCEE-EEEEEEECS--SEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEE-EECCTTSCEEEEE
T ss_pred hcCCCCCEE-EEEEEEEeC--ceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEE-EEEeCCCCEEEEE
Confidence 468889875 788877643 56666664333332221 0 14567899999999986 33 223455443
No 32
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=20.91 E-value=53 Score=27.63 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=13.2
Q ss_pred CCCCCCCEEEEEEEEc
Q 019941 298 KFLEDGDEVTFTGFCK 313 (333)
Q Consensus 298 ~~L~~GD~V~~~~~~~ 313 (333)
--|++||.|++++.+.
T Consensus 120 L~LkDGD~V~I~v~~~ 135 (146)
T 2oyn_A 120 FNLKDGDVIKILIKGD 135 (146)
T ss_dssp HTCCTTCEEEEEEECC
T ss_pred cCCCCCCEEEEEEeCC
Confidence 4599999999997654
No 33
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=20.76 E-value=1.2e+02 Score=26.90 Aligned_cols=67 Identities=22% Similarity=0.101 Sum_probs=36.1
Q ss_pred cCCCCEEEcCCC-CCCccCCCCcEEEEEecCccc-----eec-CCCCCCCCCCCCEEEEEEE-EcCCCceeeeec
Q 019941 257 LRSGDLLGTGTI-SGPEPESLGCLLELTWNGQKP-----LSL-DGFTRKFLEDGDEVTFTGF-CKGNGYTVGFGT 323 (333)
Q Consensus 257 L~pGDvI~TGTp-~Gv~~~~~Gd~~e~~~~g~g~-----l~~-~~~~~~~L~~GD~V~~~~~-~~~~~~~~g~G~ 323 (333)
.-|||.|.+... .|.+....++.+.+++.|+-. +++ +....-..+.||+|.-++. +..++..+.+|.
T Consensus 5 V~PGd~l~~~~~~~G~Gty~~~g~i~as~~G~v~~~~~~v~V~p~~~~y~p~~GDiV~G~V~~v~~~~a~V~I~~ 79 (229)
T 2ba0_A 5 VLPGDLLSTNPRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIYS 79 (229)
T ss_dssp ECTTCEEESCTTSBCTTEEEETTEEEECSSEEEEECSSCEEEEECSSSCCCCTTCEEEEEEEEECSSEEEEECSS
T ss_pred EcCCCCcccCCeEecCCEEEeCCEEEEEEEEEEEEeCCEEEEEeCCCcccCCCCCEEEEEEEEEeCCeEEEEeCC
Confidence 458999986542 133333334445555554321 222 2223345899999965541 346666666663
No 34
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=20.67 E-value=51 Score=26.93 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=25.9
Q ss_pred cccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceecCCCCCCCCCCCCEEEEE
Q 019941 255 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFT 309 (333)
Q Consensus 255 ~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~~~~~~~~L~~GD~V~~~ 309 (333)
..|+|||||+.++. ++ .++-+.+.+ ..++..|+.|+++
T Consensus 88 ~~~~pGDlvff~~~-~~------~HVgIy~G~----------g~~ihag~~V~i~ 125 (142)
T 3gt2_A 88 QQARKGDLIFYGPE-GT------QSVAMYLGN----------NQMLEVGDVVQVS 125 (142)
T ss_dssp GGCCTTCEEEESGG-GC------SEEEEEEET----------TEEEEESSBEEEE
T ss_pred hhCCCCCEEEeCCC-CC------CEEEEEecC----------CEEEeCCCcEEEE
Confidence 36999999999764 21 356666542 3456678888877
No 35
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=20.62 E-value=49 Score=26.64 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=32.4
Q ss_pred ccCCCCEEEcCCCCCCccCCCCcEEEEE--ecCccceec-C----CCCCCCCCCCCEEEEEE
Q 019941 256 NLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLSL-D----GFTRKFLEDGDEVTFTG 310 (333)
Q Consensus 256 tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~--~~g~g~l~~-~----~~~~~~L~~GD~V~~~~ 310 (333)
.++.|+++ .|+..++.. -|..|++. ++|+-.++- . ......++.||.|++.+
T Consensus 4 ~~~vG~iv-~G~V~~i~~--~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV 62 (130)
T 2k4k_A 4 KFEVGSVY-TGKVTGLQA--YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62 (130)
T ss_dssp CCCTTCEE-EEEEEEEET--TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEE
T ss_pred cCCCCCEE-EEEEEEEeC--CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEE
Confidence 57888864 788777644 36666652 333332221 1 13456899999999986
Done!