BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019942
         (333 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B3E7S8|RPOB_GEOLS DNA-directed RNA polymerase subunit beta OS=Geobacter lovleyi
           (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpoB PE=3
           SV=1
          Length = 1497

 Score = 40.0 bits (92), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 18/144 (12%)

Query: 65  WADLLCSGRQSPQSVDVALVFVGRELQSSHISGNKHADLALVDTLKVSFTKSNFSMAFPY 124
           W D  C+    P  +  A +    +L  S ++G +  DLAL D L    TKS   +    
Sbjct: 421 WPD--CTILNGPTMLTAAELQNAEQLIGSLLNGTRPVDLALKDRLSSDLTKSLKKLDLKQ 478

Query: 125 IVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEG----ENFLKLADL--HSVHD 178
            V    E +   L  E   A      VAN  F +   + G    E+F+KL DL     +D
Sbjct: 479 PVP---ERLLEQLADELNSA------VANAEFFQRDLIAGLELPESFIKLMDLIEQGGYD 529

Query: 179 HLRLRAEKSLKGQADLIVVCYGDT 202
             R R E  L+    L+ V YGD+
Sbjct: 530 ENRRRIE-GLRRNRMLLEVAYGDS 552


>sp|Q96BY6|DOC10_HUMAN Dedicator of cytokinesis protein 10 OS=Homo sapiens GN=DOCK10 PE=1
            SV=3
          Length = 2186

 Score = 32.0 bits (71), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 17/197 (8%)

Query: 95   ISGNKHADLALVDTLKVSFTKSNFSMAFPYIVSAGEETMESSLFSEFTEACVDDFKVANV 154
            +SG KH  +A     +   T S+    FPY+    +   +SS      E  +D+      
Sbjct: 1985 LSGKKHGGVAEQCKRRTILTTSHL---FPYVKKRIQVISQSSTELNPIEVAIDEMSKKVS 2041

Query: 155  AFSESCTVEGENFLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPE 214
              ++ CT+E  + ++L         L+L+   S+K  A  +       +     K P   
Sbjct: 2042 ELNQLCTMEEVDMIRL--------QLKLQGSVSVKVNAGPMAYARAFLEETNAKKYP--- 2090

Query: 215  TWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVRSVQYPSHQELERFLAE 274
               NQ   +   F    +   + +D V +   K   L   + +RS       EL   + E
Sbjct: 2091 --DNQVKLLKEIFRQFADACGQALD-VNERLIKEDQLEYQEELRSHYKDMLSELSTVMNE 2147

Query: 275  SVAGNKSANNTGCDEVC 291
             + G    +  G D+ C
Sbjct: 2148 QITGRDDLSKRGVDQTC 2164


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,158,650
Number of Sequences: 539616
Number of extensions: 4684726
Number of successful extensions: 12312
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12311
Number of HSP's gapped (non-prelim): 4
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)