Query 019942
Match_columns 333
No_of_seqs 142 out of 158
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05827 ATP-synt_S1: Vacuolar 100.0 8.9E-38 1.9E-42 296.3 19.4 236 26-320 1-282 (282)
2 KOG3868 Vacuolar H+-ATPase V0 98.5 7.9E-08 1.7E-12 95.4 4.4 41 292-332 361-402 (411)
3 TIGR01195 oadG_fam sodium pump 70.1 6.2 0.00014 31.5 3.6 32 297-328 11-42 (82)
4 PF14004 DUF4227: Protein of u 66.8 7.9 0.00017 30.3 3.5 27 307-333 16-43 (71)
5 PF00056 Ldh_1_N: lactate/mala 64.8 5.3 0.00011 34.4 2.4 55 190-258 68-122 (141)
6 PRK02919 oxaloacetate decarbox 62.1 8.4 0.00018 30.9 2.9 28 298-325 15-42 (82)
7 PF04277 OAD_gamma: Oxaloaceta 53.6 13 0.00029 28.6 2.7 25 297-321 8-32 (79)
8 PRK03814 oxaloacetate decarbox 48.0 25 0.00054 28.4 3.5 25 297-321 15-39 (85)
9 cd01337 MDH_glyoxysomal_mitoch 46.3 25 0.00054 34.6 4.0 55 190-258 67-121 (310)
10 COG2194 Predicted membrane-ass 45.4 20 0.00043 38.2 3.4 33 227-259 425-457 (555)
11 PRK05086 malate dehydrogenase; 44.4 29 0.00062 33.9 4.1 53 191-257 69-121 (312)
12 PLN00135 malate dehydrogenase 43.9 31 0.00066 33.9 4.2 53 190-256 57-110 (309)
13 PF13706 PepSY_TM_3: PepSY-ass 43.8 36 0.00078 22.9 3.3 25 295-319 7-31 (37)
14 cd01338 MDH_choloroplast_like 42.2 34 0.00075 33.6 4.3 53 190-256 77-130 (322)
15 TIGR01771 L-LDH-NAD L-lactate 41.1 31 0.00068 33.5 3.8 53 190-256 63-115 (299)
16 COG3630 OadG Na+-transporting 40.6 32 0.00069 27.9 3.1 29 297-325 14-42 (84)
17 cd05291 HicDH_like L-2-hydroxy 39.4 36 0.00077 32.9 3.9 53 190-256 67-119 (306)
18 TIGR01763 MalateDH_bact malate 39.4 36 0.00077 33.1 3.9 53 190-256 68-120 (305)
19 cd05290 LDH_3 A subgroup of L- 39.0 38 0.00083 33.1 4.0 53 190-256 67-121 (307)
20 PF05624 LSR: Lipolysis stimul 38.0 22 0.00047 25.8 1.6 19 300-318 6-24 (49)
21 TIGR01772 MDH_euk_gproteo mala 36.2 55 0.0012 32.1 4.7 55 190-258 66-120 (312)
22 TIGR01759 MalateDH-SF1 malate 35.8 48 0.001 32.7 4.1 53 190-256 78-131 (323)
23 cd05293 LDH_1 A subgroup of L- 35.4 39 0.00084 33.1 3.4 53 190-256 70-122 (312)
24 PLN02602 lactate dehydrogenase 34.8 45 0.00097 33.4 3.8 53 190-256 104-156 (350)
25 TIGR01756 LDH_protist lactate 33.9 43 0.00094 32.9 3.5 53 190-256 59-112 (313)
26 PRK05442 malate dehydrogenase; 30.8 70 0.0015 31.6 4.4 53 190-256 79-132 (326)
27 PLN00112 malate dehydrogenase 30.7 55 0.0012 34.0 3.8 53 190-256 175-228 (444)
28 PRK00066 ldh L-lactate dehydro 30.0 63 0.0014 31.6 3.9 53 190-256 72-124 (315)
29 COG0039 Mdh Malate/lactate deh 29.9 78 0.0017 31.4 4.5 53 190-256 68-120 (313)
30 cd00704 MDH Malate dehydrogena 29.3 70 0.0015 31.5 4.1 53 190-256 75-128 (323)
31 cd00300 LDH_like L-lactate deh 28.7 66 0.0014 31.0 3.8 53 190-256 65-117 (300)
32 PRK10649 hypothetical protein; 28.1 47 0.001 35.4 2.8 36 224-259 430-465 (577)
33 PTZ00117 malate dehydrogenase; 28.1 69 0.0015 31.3 3.8 53 190-256 72-124 (319)
34 PRK09598 lipid A phosphoethano 27.8 58 0.0013 34.3 3.4 33 226-258 409-441 (522)
35 cd01339 LDH-like_MDH L-lactate 25.9 87 0.0019 30.0 4.0 53 190-256 65-117 (300)
36 PF13179 DUF4006: Family of un 25.7 99 0.0021 24.0 3.5 37 295-331 11-52 (66)
37 TIGR01757 Malate-DH_plant mala 25.5 80 0.0017 32.2 3.8 53 190-256 119-172 (387)
38 TIGR01149 mtrG N5-methyltetrah 25.0 93 0.002 24.4 3.2 21 295-316 47-67 (70)
39 COG4064 MtrG Tetrahydromethano 24.5 1.1E+02 0.0024 24.1 3.5 25 289-313 37-68 (75)
40 PRK06223 malate dehydrogenase; 23.5 91 0.002 29.8 3.7 53 190-256 69-121 (307)
41 PF10731 Anophelin: Thrombin i 23.3 96 0.0021 23.8 2.9 27 1-28 1-27 (65)
42 PLN00106 malate dehydrogenase 23.1 1.1E+02 0.0023 30.3 4.1 55 190-258 85-139 (323)
43 cd05294 LDH-like_MDH_nadp A la 22.6 1.3E+02 0.0028 29.3 4.5 53 190-256 71-123 (309)
44 PF04210 MtrG: Tetrahydrometha 22.1 1.1E+02 0.0025 23.9 3.2 19 295-313 47-65 (70)
45 PF10777 YlaC: Inner membrane 21.6 2E+02 0.0042 25.9 5.0 16 295-310 36-51 (155)
46 PRK02624 psbH photosystem II r 20.4 94 0.002 23.9 2.4 10 296-305 32-41 (64)
No 1
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=100.00 E-value=8.9e-38 Score=296.25 Aligned_cols=236 Identities=23% Similarity=0.233 Sum_probs=177.0
Q ss_pred CcceEEeecCC-cCCC-CcccccccCCChhhHHHHHHhhCCCccccccCCCCCCCCcEEEEEEcCCCCccccCCCCC-CC
Q 019942 26 TVPAFLWSTHH-QKIS-SNNALNYQTLSPKDLAKAVLTQGGWADLLCSGRQSPQSVDVALVFVGRELQSSHISGNKH-AD 102 (333)
Q Consensus 26 tvPa~lWSs~~-~~l~-s~~~~~yq~~s~~sl~~svl~~~~~s~~lc~~~~~~c~sd~yllf~Qp~L~ssD~s~~k~-~~ 102 (333)
+||+||||++. .++- .....+-+.++..++...+. ..+.+||+|+||++.|||||++||+..+. .+
T Consensus 1 t~P~~l~St~~~~~l~~~~~~~~~~~~s~~~~~~~~~-----------~~l~~cpsd~yl~v~Qpgl~~~Df~~~~~~~~ 69 (282)
T PF05827_consen 1 TVPFFLFSTKLSPGLPPSIPPSSGQIQSSSSFLSYLK-----------SLLSSCPSDAYLFVNQPGLSASDFTDYGSSAF 69 (282)
T ss_pred CCCEEEEECCCcccccccCCCCcCcCccHHHHHHHHH-----------HHHhcCCCceEEEEecccccHhhccccccCcc
Confidence 69999999992 1111 12223456667777775443 44679999999999999999999998764 68
Q ss_pred hHHHHHHhhccccceeeEEeceee-cccchhhHHHHHHHHHHhccccceeceeeecCCccccccchhhhhccchhhhHHh
Q 019942 103 LALVDTLKVSFTKSNFSMAFPYIV-SAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADLHSVHDHLR 181 (333)
Q Consensus 103 p~L~~~L~~s~~~s~sS~~~P~V~-~~~~~~~~~sL~~~l~~~C~~~~~~~~V~~~~~~~~~~~~~~~l~~~~~v~~yi~ 181 (333)
|+|++++.. +.+++.+|+|. ++.+ .+.|.+|++++|++.... |+.++.-. ..
T Consensus 70 p~L~~~~~~----s~s~~~~~~v~~~~~~---~~~L~~~l~~~c~~~~~~--v~~~~~~~---------------~~--- 122 (282)
T PF05827_consen 70 PNLRRYLYS----SSSSLVLPAVESGWLD---LSQLAEYLKEKCGASVVI--VDVSDLSE---------------DS--- 122 (282)
T ss_pred hHHHHHHhc----CCcceeeeeEecCccC---HHHHHHHHHHHhCcCceE--EecCcccc---------------cc---
Confidence 999999965 77889999998 7888 889999999999987666 66654311 11
Q ss_pred HhHhhhcCCCceEEEEe-cCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecCCC--
Q 019942 182 LRAEKSLKGQADLIVVC-YGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVR-- 258 (333)
Q Consensus 182 ~~~~~~~~~~~~livv~-~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~-- 258 (333)
..+.+++||+|+ ++.+. ....|.| +|.+||++|+++++.+++.+ +|||||||+|..
T Consensus 123 -----~~~~~~~vi~V~l~~l~~----~~~~R~~-----------~L~~nD~~l~~vl~~l~s~~-~ytvIyts~~ps~v 181 (282)
T PF05827_consen 123 -----FEEYKPRVIRVDLPPLPS----SSESRKE-----------ALSDNDEFLRKVLSKLPSPD-PYTVIYTSTPPSRV 181 (282)
T ss_pred -----ccccCCcEEEEECCCCCC----ccccchh-----------hhhhhhHHHHHHHHhcCCCC-cEEEEEEccCcccc
Confidence 113489999999 54552 2378999 99999999999999999544 599999999811
Q ss_pred ------------------CCCCCcchhhh-----------------Hhhhhhcc--CCCCCC-CCCCcccccch-hhhHH
Q 019942 259 ------------------SVQYPSHQELE-----------------RFLAESVA--GNKSAN-NTGCDEVCQFK-SSLFE 299 (333)
Q Consensus 259 ------------------~~~~p~h~~Lk-----------------R~la~~~~--~~~s~~-~~~~f~~yQ~~-p~i~~ 299 (333)
.++.+.|+||+ |.+..+.. .+.+.+ .+.+|++|||| |||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~yQFftpgi~m 261 (282)
T PF05827_consen 182 HPREDSSSEFEIFEDIFNDFSRPVEMDLKNAGSRCSSENDPNVNPYRSFNSHDPKPSNSPDNEWDILFFDYQFFTPGIWM 261 (282)
T ss_pred cccccCCCCcccchhhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccCCCCcccccceehhheeeeccHHH
Confidence 12345678888 22211111 111211 14599999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 019942 300 GILVGIVLLLILVSGLCCMMG 320 (333)
Q Consensus 300 gllv~~~ll~il~~Gl~~l~~ 320 (333)
|++++++|+.||++||.||+|
T Consensus 262 glii~~~ll~IL~~gl~~l~S 282 (282)
T PF05827_consen 262 GLIISLVLLSILYVGLSMLMS 282 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999986
No 2
>KOG3868 consensus Vacuolar H+-ATPase V0 sector, accessory subunit S1 (Ac45) [Energy production and conversion]
Probab=98.51 E-value=7.9e-08 Score=95.41 Aligned_cols=41 Identities=34% Similarity=0.610 Sum_probs=39.4
Q ss_pred cch-hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCC
Q 019942 292 QFK-SSLFEGILVGIVLLLILVSGLCCMMGIDTPTRFEAPQE 332 (333)
Q Consensus 292 Q~~-p~i~~gllv~~~ll~il~~Gl~~l~~l~~p~rfe~pk~ 332 (333)
-|| |||+|||+++++||.||..|+++|.+|++++|||+||+
T Consensus 361 gffSpgilmGLfvvliLl~IL~~Gl~mllsi~tmdrfdd~k~ 402 (411)
T KOG3868|consen 361 GFFSPGILMGLFVVLILLAILWYGLHMLLSIGTMDRFDDPKG 402 (411)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccCcCC
Confidence 467 99999999999999999999999999999999999997
No 3
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=70.09 E-value=6.2 Score=31.45 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCC
Q 019942 297 LFEGILVGIVLLLILVSGLCCMMGIDTPTRFE 328 (333)
Q Consensus 297 i~~gllv~~~ll~il~~Gl~~l~~l~~p~rfe 328 (333)
.+.|+.++|++|++|+..+..|+.+...+.|+
T Consensus 11 ~v~GM~~VF~fL~lLi~~i~~~~~~~~~~~~~ 42 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLIYAVRGMGKVVGRKKVP 42 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 36788999999999999999999888777554
No 4
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=66.83 E-value=7.9 Score=30.32 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCCCC-cCCCCCCC
Q 019942 307 LLLILVSGLCCMMGIDTPT-RFEAPQES 333 (333)
Q Consensus 307 ll~il~~Gl~~l~~l~~p~-rfe~pk~~ 333 (333)
+-.++|-||.|++.==.|+ ||+.|+++
T Consensus 16 ~T~lfYy~~~w~~~~~~~~hrY~eP~G~ 43 (71)
T PF14004_consen 16 CTLLFYYAILWVSDEYEPYHRYDEPEGS 43 (71)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCc
Confidence 4456678999999777777 99999974
No 5
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=64.76 E-value=5.3 Score=34.40 Aligned_cols=55 Identities=22% Similarity=0.437 Sum_probs=44.1
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecCCC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVR 258 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~ 258 (333)
...|+|++..+.+. .++++|.+ .+..|-++++++...+.+.+++=.+|.+|.|..
T Consensus 68 ~~aDivvitag~~~---~~g~sR~~-----------ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd 122 (141)
T PF00056_consen 68 KDADIVVITAGVPR---KPGMSRLD-----------LLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD 122 (141)
T ss_dssp TTESEEEETTSTSS---STTSSHHH-----------HHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH
T ss_pred ccccEEEEeccccc---cccccHHH-----------HHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH
Confidence 46789999843331 25578999 999999999999999998899989999999943
No 6
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=62.09 E-value=8.4 Score=30.89 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019942 298 FEGILVGIVLLLILVSGLCCMMGIDTPT 325 (333)
Q Consensus 298 ~~gllv~~~ll~il~~Gl~~l~~l~~p~ 325 (333)
+.|+-++++||+||+.++..|..+--++
T Consensus 15 vlGMg~VfvFL~lLI~~i~~ms~l~~~~ 42 (82)
T PRK02919 15 FLGMGFVLAFLFLLIFAIRGMSALINRF 42 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788889999999999999999886555
No 7
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=53.59 E-value=13 Score=28.57 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Q 019942 297 LFEGILVGIVLLLILVSGLCCMMGI 321 (333)
Q Consensus 297 i~~gllv~~~ll~il~~Gl~~l~~l 321 (333)
.+.|+.++|+.|.+|+..+..|+.+
T Consensus 8 ~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999887
No 8
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=48.02 E-value=25 Score=28.37 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Q 019942 297 LFEGILVGIVLLLILVSGLCCMMGI 321 (333)
Q Consensus 297 i~~gllv~~~ll~il~~Gl~~l~~l 321 (333)
.+.|+.++|++|+||+.++..|+-+
T Consensus 15 m~~GM~~VF~fL~lLi~~~~l~~~~ 39 (85)
T PRK03814 15 MLTGMGVVFIFLTLLVYLVQLMSKL 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988866
No 9
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.25 E-value=25 Score=34.57 Aligned_cols=55 Identities=27% Similarity=0.454 Sum_probs=46.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecCCC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVR 258 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~ 258 (333)
...|+++++.+.+. ..+++|.+ .|..|-++++++...+.+.+++=.+|-+|.|.+
T Consensus 67 ~daDivvitaG~~~---k~g~tR~d-----------ll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvD 121 (310)
T cd01337 67 KGADVVVIPAGVPR---KPGMTRDD-----------LFNINAGIVRDLATAVAKACPKALILIISNPVN 121 (310)
T ss_pred CCCCEEEEeCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEccCchh
Confidence 46789999953332 24578999 999999999999999988899999999999963
No 10
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=45.40 E-value=20 Score=38.17 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=28.0
Q ss_pred cccccHHHHHHHHHhhhcCCcEEEEEEecCCCC
Q 019942 227 FIHAGEVISELIDSVEKSGAKYTVLYVSDPVRS 259 (333)
Q Consensus 227 l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~~ 259 (333)
+.-+|.+|+++++.+++..++..+||+||=.-+
T Consensus 425 ilYtD~~L~~vi~~Lk~~~~~~~liY~SDHGEs 457 (555)
T COG2194 425 ILYTDYFLSKLIDQLKDKKDNTSLIYFSDHGES 457 (555)
T ss_pred hhhhHHHHHHHHHHHHhCCCCeEEEEEcCccHh
Confidence 445699999999999988779999999999443
No 11
>PRK05086 malate dehydrogenase; Provisional
Probab=44.38 E-value=29 Score=33.92 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=44.2
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecCC
Q 019942 191 QADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPV 257 (333)
Q Consensus 191 ~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~ 257 (333)
..|+|+++.+.+. ..+.+|.+ .|..|-.++.+++..+.+.+++..|+-+|.|.
T Consensus 69 ~~DiVIitaG~~~---~~~~~R~d-----------ll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 69 GADVVLISAGVAR---KPGMDRSD-----------LFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCEEEEcCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4899999953321 24467999 99999999999999999889999999999995
No 12
>PLN00135 malate dehydrogenase
Probab=43.93 E-value=31 Score=33.92 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhh-cCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEK-SGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~-~~~~YTViYtS~P 256 (333)
...|+|++..+.+. ..+++|.+ .|..|-++++++...+.+ .+++-.+|.+|.|
T Consensus 57 ~daDiVVitAG~~~---k~g~sR~d-----------ll~~N~~I~~~i~~~i~~~~~p~aivivvsNP 110 (309)
T PLN00135 57 KGVNIAVMVGGFPR---KEGMERKD-----------VMSKNVSIYKSQASALEKHAAPDCKVLVVANP 110 (309)
T ss_pred CCCCEEEEeCCCCC---CCCCcHHH-----------HHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 46789999954432 24578999 999999999999999998 4899999999999
No 13
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=43.80 E-value=36 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.618 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 019942 295 SSLFEGILVGIVLLLILVSGLCCMM 319 (333)
Q Consensus 295 p~i~~gllv~~~ll~il~~Gl~~l~ 319 (333)
-.-+.|++++++|+.+.++|.-++-
T Consensus 7 ~H~W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 7 LHRWLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567899999999999999987654
No 14
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.24 E-value=34 Score=33.63 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=44.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcC-CcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSG-AKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~-~~YTViYtS~P 256 (333)
...|+|+++.+.+. ..+++|.+ .|..|-++++++...+.+.+ ++-.+|.+|.|
T Consensus 77 ~daDivvitaG~~~---k~g~tR~d-----------ll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 77 KDADWALLVGAKPR---GPGMERAD-----------LLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred CCCCEEEEeCCCCC---CCCCcHHH-----------HHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 46789999954432 24578999 99999999999999998878 48999999999
No 15
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=41.09 E-value=31 Score=33.49 Aligned_cols=53 Identities=28% Similarity=0.428 Sum_probs=44.6
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+|++..+.+. ..+.+|.+ .|..|-++++++...+.+.+++=.+|-+|.|
T Consensus 63 ~daDivVitag~~r---k~g~~R~d-----------ll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 115 (299)
T TIGR01771 63 KDADLVVITAGAPQ---KPGETRLE-----------LVGRNVRIMKSIVPEVVKSGFDGIFLVATNP 115 (299)
T ss_pred CCCCEEEECCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45789999854431 24578999 9999999999999999888999999999999
No 16
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=40.56 E-value=32 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019942 297 LFEGILVGIVLLLILVSGLCCMMGIDTPT 325 (333)
Q Consensus 297 i~~gllv~~~ll~il~~Gl~~l~~l~~p~ 325 (333)
.++|+-+++++|+||..-+.+|+-+...+
T Consensus 14 ~vlGmg~VflfL~iLi~~~~~m~~~v~r~ 42 (84)
T COG3630 14 MVLGMGFVFLFLSILIYAMRGMGAVVRRF 42 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788888899999999999998766554
No 17
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=39.43 E-value=36 Score=32.86 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=44.4
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+++++.+.+. ..+.+|.+ .+..|-.+++++...+.+.+++=.+|-+|.|
T Consensus 67 ~~aDIVIitag~~~---~~g~~R~d-----------ll~~N~~i~~~~~~~i~~~~~~~~vivvsNP 119 (306)
T cd05291 67 KDADIVVITAGAPQ---KPGETRLD-----------LLEKNAKIMKSIVPKIKASGFDGIFLVASNP 119 (306)
T ss_pred CCCCEEEEccCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEecCh
Confidence 46799999943331 24578999 9999999999999999988889899999999
No 18
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=39.36 E-value=36 Score=33.11 Aligned_cols=53 Identities=17% Similarity=0.395 Sum_probs=43.7
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+++++.+.+. ..+++|.+ .+..|-+++.++...+.+..++.-+|.+|.|
T Consensus 68 ~~aDiVIitag~p~---~~~~sR~~-----------l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 68 ANSDIVVITAGLPR---KPGMSRED-----------LLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred CCCCEEEEcCCCCC---CcCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46799999943331 24568989 9999999999999999877889999999999
No 19
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.05 E-value=38 Score=33.07 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCceEEEEecCCCCCCCCCCCC--CCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQP--RPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~--R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+|++..+.+. .++++ |.+ .|..|-++++++...+.+.+++=.+|-+|.|
T Consensus 67 ~~aDivvitaG~~~---kpg~tr~R~d-----------ll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 67 ADADIIVITAGPSI---DPGNTDDRLD-----------LAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCEEEECCCCCC---CCCCCchHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46789999853331 13455 689 9999999999999999988999999999999
No 20
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=38.01 E-value=22 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019942 300 GILVGIVLLLILVSGLCCM 318 (333)
Q Consensus 300 gllv~~~ll~il~~Gl~~l 318 (333)
.+++...||.++.+|++|-
T Consensus 6 ~~iilg~~ll~~LigiCwC 24 (49)
T PF05624_consen 6 VLIILGALLLLLLIGICWC 24 (49)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3455556777788899873
No 21
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=36.19 E-value=55 Score=32.14 Aligned_cols=55 Identities=25% Similarity=0.471 Sum_probs=45.6
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecCCC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVR 258 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~ 258 (333)
...|+++++.+.+. ..+.+|.+ .|..|-.+++++...+.+.+++--+|-+|.|.+
T Consensus 66 ~daDivvitaG~~~---~~g~~R~d-----------ll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvD 120 (312)
T TIGR01772 66 KGADVVVIPAGVPR---KPGMTRDD-----------LFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120 (312)
T ss_pred CCCCEEEEeCCCCC---CCCccHHH-----------HHHHhHHHHHHHHHHHHHhCCCeEEEEecCchh
Confidence 46789999843331 24578999 999999999999999988899999999999964
No 22
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=35.80 E-value=48 Score=32.73 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=44.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCC-cEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGA-KYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~-~YTViYtS~P 256 (333)
...|+|++..+.+. ..+++|.+ .|..|-.+++++...+.+.++ +=.+|.+|.|
T Consensus 78 ~daDvVVitAG~~~---k~g~tR~d-----------ll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 78 KDVDAALLVGAFPR---KPGMERAD-----------LLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred CCCCEEEEeCCCCC---CCCCcHHH-----------HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 45689999954432 24678999 999999999999999998887 8889999999
No 23
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.41 E-value=39 Score=33.09 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=44.4
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+|+++.+.+. ..+++|.+ .|..|-.+++++...+.+.+++=.+|.+|.|
T Consensus 70 ~~adivvitaG~~~---k~g~~R~d-----------ll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 122 (312)
T cd05293 70 ANSKVVIVTAGARQ---NEGESRLD-----------LVQRNVDIFKGIIPKLVKYSPNAILLVVSNP 122 (312)
T ss_pred CCCCEEEECCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence 46789999853331 14578999 9999999999999999988999999999999
No 24
>PLN02602 lactate dehydrogenase
Probab=34.79 E-value=45 Score=33.35 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+|+++.+.+. ..+++|.+ .|..|-++++++...+.+.+++=.+|.+|.|
T Consensus 104 ~daDiVVitAG~~~---k~g~tR~d-----------ll~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 104 AGSDLCIVTAGARQ---IPGESRLN-----------LLQRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred CCCCEEEECCCCCC---CcCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46799999953331 24578999 9999999999999999888999999999999
No 25
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=33.90 E-value=43 Score=32.89 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=42.7
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCc-EEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAK-YTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~-YTViYtS~P 256 (333)
...|+|++..+.+. ..+++|.+ .|..|-++++++...+.+.+++ --+|-+|.|
T Consensus 59 ~daDiVVitaG~~~---k~g~tR~d-----------ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNP 112 (313)
T TIGR01756 59 KDIDCAFLVASVPL---KPGEVRAD-----------LLTKNTPIFKATGEALSEYAKPTVKVLVIGNP 112 (313)
T ss_pred CCCCEEEECCCCCC---CcCCCHHH-----------HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 46789999853331 24578999 9999999999999999887755 558999999
No 26
>PRK05442 malate dehydrogenase; Provisional
Probab=30.77 E-value=70 Score=31.60 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhc-CCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKS-GAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~-~~~YTViYtS~P 256 (333)
...|+|+++.+.+. ..+++|.+ .|..|-++++++...+.+. .++=.+|-+|.|
T Consensus 79 ~daDiVVitaG~~~---k~g~tR~d-----------ll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 79 KDADVALLVGARPR---GPGMERKD-----------LLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred CCCCEEEEeCCCCC---CCCCcHHH-----------HHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 46789999854331 24578999 9999999999999999874 468889999999
No 27
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=30.73 E-value=55 Score=33.98 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhh-cCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEK-SGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~-~~~~YTViYtS~P 256 (333)
...|++++..+.+. ..+++|.+ .|..|-.+++++...|.+ .+++=.||.+|.|
T Consensus 175 kdaDiVVitAG~pr---kpG~tR~d-----------Ll~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 175 QDAEWALLIGAKPR---GPGMERAD-----------LLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CcCCEEEECCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 46789999843332 24578999 999999999999999998 6899999999999
No 28
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=30.01 E-value=63 Score=31.56 Aligned_cols=53 Identities=26% Similarity=0.408 Sum_probs=43.8
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|++++..+.+. ..+.+|.+ .+..|-.+++++...+.+.+++=.+|-+|.|
T Consensus 72 ~~adivIitag~~~---k~g~~R~d-----------ll~~N~~i~~~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 72 KDADLVVITAGAPQ---KPGETRLD-----------LVEKNLKIFKSIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred CCCCEEEEecCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 46789999853331 24578999 9999999999999999888888889999999
No 29
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=29.86 E-value=78 Score=31.39 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=44.9
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|++++....+. .++.+|.+ .|..|-.+++++...+.+.+++=-+|-+|.|
T Consensus 68 ~~aDiVvitAG~pr---KpGmtR~D-----------Ll~~Na~I~~~i~~~i~~~~~d~ivlVvtNP 120 (313)
T COG0039 68 KGADIVVITAGVPR---KPGMTRLD-----------LLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120 (313)
T ss_pred cCCCEEEEeCCCCC---CCCCCHHH-----------HHHhhHHHHHHHHHHHHhhCCCeEEEEecCc
Confidence 35689999954442 25678999 9999999999999999998989999999999
No 30
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.34 E-value=70 Score=31.48 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhc-CCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKS-GAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~-~~~YTViYtS~P 256 (333)
...|+|++..+.+. ..+++|.+ .+..|-++++++...+.+. +++-.+|.+|.|
T Consensus 75 ~~aDiVVitAG~~~---~~g~tR~d-----------ll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 75 KDVDVAILVGAFPR---KPGMERAD-----------LLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred CCCCEEEEeCCCCC---CcCCcHHH-----------HHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 35788999854432 25678999 9999999999999999887 488889999999
No 31
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=28.72 E-value=66 Score=31.04 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=44.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+++++.+.+. ..+.+|.+ .+..|=.+++++...+.+.+++-.+|-+|.|
T Consensus 65 ~~aDiVIitag~p~---~~~~~R~~-----------l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 65 ADADIVVITAGAPR---KPGETRLD-----------LINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred CCCCEEEEcCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 46789999943331 24578999 9999999999999999988899999999999
No 32
>PRK10649 hypothetical protein; Provisional
Probab=28.09 E-value=47 Score=35.38 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.5
Q ss_pred ccccccccHHHHHHHHHhhhcCCcEEEEEEecCCCC
Q 019942 224 HPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVRS 259 (333)
Q Consensus 224 ~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~~ 259 (333)
.-.+..+|.+|+++++.+++.+.+..+||+||-...
T Consensus 430 ~nsI~y~D~~l~~ii~~Lk~~~~nt~iiy~SDHGe~ 465 (577)
T PRK10649 430 DNANLYNDHVVASLIKDFKATDPNGFLVYFSDHGEE 465 (577)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCcc
Confidence 445666799999999999987778899999998543
No 33
>PTZ00117 malate dehydrogenase; Provisional
Probab=28.08 E-value=69 Score=31.31 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+|+++...+. .....|.+ .+..|.+++.++...+.+..++-.+|.+|.|
T Consensus 72 ~~ADiVVitag~~~---~~g~~r~d-----------ll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 72 KDSDVVVITAGVQR---KEEMTRED-----------LLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CCCCEEEECCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 45689999843331 24467888 9999999999999999988888889999999
No 34
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=27.80 E-value=58 Score=34.35 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.5
Q ss_pred ccccccHHHHHHHHHhhhcCCcEEEEEEecCCC
Q 019942 226 WFIHAGEVISELIDSVEKSGAKYTVLYVSDPVR 258 (333)
Q Consensus 226 ~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~ 258 (333)
.+.-.|..|+++++.+++.+.+..+||+||-..
T Consensus 409 sI~ytD~~l~~ii~~Lk~~~~~t~iIy~SDHGe 441 (522)
T PRK09598 409 TIFYNDYLLDKIISMLKNLKQPALMIYLSDHGE 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEEccCcc
Confidence 445569999999999998767999999999744
No 35
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=25.88 E-value=87 Score=30.00 Aligned_cols=53 Identities=19% Similarity=0.436 Sum_probs=42.6
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+++++...+. ..+..|.| .+.+|=+++.++...+.+..++-.+|.+|.|
T Consensus 65 ~dADiVIit~g~p~---~~~~~r~e-----------~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 65 AGSDVVVITAGIPR---KPGMSRDD-----------LLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred CCCCEEEEecCCCC---CcCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 45789998832321 24567888 8999999999999999888889999999999
No 36
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=25.75 E-value=99 Score=23.99 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHh----CCCCCCcCCCCC
Q 019942 295 SSLFEGILVGIVLLLILV-SGLCCMM----GIDTPTRFEAPQ 331 (333)
Q Consensus 295 p~i~~gllv~~~ll~il~-~Gl~~l~----~l~~p~rfe~pk 331 (333)
-||.==++++.+||.|+. .|+.++. .-+.||+.++++
T Consensus 11 nGi~G~LIAvvLLLsIl~~lt~~ai~~Qq~~At~~Y~~~d~~ 52 (66)
T PF13179_consen 11 NGITGMLIAVVLLLSILAFLTYWAIKVQQEQATNPYKLKDAN 52 (66)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChH
Confidence 565544455555666665 4555554 566788877664
No 37
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=25.49 E-value=80 Score=32.15 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=43.2
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhh-cCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEK-SGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~-~~~~YTViYtS~P 256 (333)
...|++++..+.+. ..+++|.+ .|..|-.+++++...+.+ .+++--+|-+|.|
T Consensus 119 kdaDIVVitAG~pr---kpg~tR~d-----------ll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 119 EDADWALLIGAKPR---GPGMERAD-----------LLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CCCCEEEECCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 46789999854432 24578999 999999999999999987 4578889999999
No 38
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.02 E-value=93 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 019942 295 SSLFEGILVGIVLLLILVSGLC 316 (333)
Q Consensus 295 p~i~~gllv~~~ll~il~~Gl~ 316 (333)
-||+-|+++++++ .+.|..+.
T Consensus 47 iGIlYG~viGlli-~~~~~~l~ 67 (70)
T TIGR01149 47 IGILYGLVIGLIL-FLIYILLS 67 (70)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH
Confidence 4999999999865 44444444
No 39
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=24.48 E-value=1.1e+02 Score=24.05 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=18.7
Q ss_pred ccccch-------hhhHHHHHHHHHHHHHHHH
Q 019942 289 EVCQFK-------SSLFEGILVGIVLLLILVS 313 (333)
Q Consensus 289 ~~yQ~~-------p~i~~gllv~~~ll~il~~ 313 (333)
|.||-+ -||+-|++++++|+.|...
T Consensus 37 Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~ 68 (75)
T COG4064 37 EVYQRIGKKIGRDIGILYGLVIGLILCMIYIL 68 (75)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 566665 2999999999988776543
No 40
>PRK06223 malate dehydrogenase; Reviewed
Probab=23.51 E-value=91 Score=29.76 Aligned_cols=53 Identities=17% Similarity=0.415 Sum_probs=41.9
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+++++...+. ..+..|.| .+..|-+++.++...+.+..++-.+|.+|.|
T Consensus 69 ~~aDiVii~~~~p~---~~~~~r~~-----------~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 69 AGSDVVVITAGVPR---KPGMSRDD-----------LLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred CCCCEEEECCCCCC---CcCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46788988832221 14467888 8999999999999999887888889999999
No 41
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.29 E-value=96 Score=23.76 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.7
Q ss_pred CCchhhHHHHHHHHHHHHhhhhcCCCcc
Q 019942 1 MMNSYVVIRLLLLEVLSAIAFASPSTVP 28 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~A~~~tvP 28 (333)
|.|..+||.++-+++.+ ++.+++.-.|
T Consensus 1 MA~Kl~vialLC~aLva-~vQ~APQYa~ 27 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA-IVQSAPQYAP 27 (65)
T ss_pred CcchhhHHHHHHHHHHH-HHhcCcccCC
Confidence 67888899888887776 5555554443
No 42
>PLN00106 malate dehydrogenase
Probab=23.06 E-value=1.1e+02 Score=30.34 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=45.0
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecCCC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDPVR 258 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P~~ 258 (333)
...|+|++....+. ..+.+|.+ .|..|-+++.++...+.+.+++=.+|-+|.|..
T Consensus 85 ~~aDiVVitAG~~~---~~g~~R~d-----------ll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 85 KGADLVIIPAGVPR---KPGMTRDD-----------LFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred CCCCEEEEeCCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 46789999953331 13567999 999999999999999998899999999999965
No 43
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=22.56 E-value=1.3e+02 Score=29.29 Aligned_cols=53 Identities=11% Similarity=0.318 Sum_probs=42.8
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCcccCCccccccccccccHHHHHHHHHhhhcCCcEEEEEEecC
Q 019942 190 GQADLIVVCYGDTQSMKQPKQPRPETWGNQRSWVHPWFIHAGEVISELIDSVEKSGAKYTVLYVSDP 256 (333)
Q Consensus 190 ~~~~livv~~~~~~~~~~~~~~R~E~~~~~~~~~~~~l~~nDe~L~~vl~~l~~~~~~YTViYtS~P 256 (333)
...|+++++.+.+. ..+++|.+ .+..|-+++.++...+.+..++..+|-++.|
T Consensus 71 ~~aDiViitag~p~---~~~~~r~d-----------l~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 71 AGSDIVIITAGVPR---KEGMSRLD-----------LAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred CCCCEEEEecCCCC---CCCCCHHH-----------HHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 46789999943331 24567888 8899999999999999887888899999999
No 44
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.10 E-value=1.1e+02 Score=23.93 Aligned_cols=19 Identities=16% Similarity=0.723 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 019942 295 SSLFEGILVGIVLLLILVS 313 (333)
Q Consensus 295 p~i~~gllv~~~ll~il~~ 313 (333)
-||+-|++++++++.++.+
T Consensus 47 iGIlYG~v~Glii~~~~~~ 65 (70)
T PF04210_consen 47 IGILYGLVIGLIIFIIYIV 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4999999999987777544
No 45
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.60 E-value=2e+02 Score=25.90 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 019942 295 SSLFEGILVGIVLLLI 310 (333)
Q Consensus 295 p~i~~gllv~~~ll~i 310 (333)
|+++-|++++.+.+.+
T Consensus 36 P~L~~~M~~~y~~~~~ 51 (155)
T PF10777_consen 36 PYLCLAMYAAYLAVAA 51 (155)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8888888776664433
No 46
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=20.37 E-value=94 Score=23.91 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=5.0
Q ss_pred hhHHHHHHHH
Q 019942 296 SLFEGILVGI 305 (333)
Q Consensus 296 ~i~~gllv~~ 305 (333)
+++|++|++|
T Consensus 32 gv~m~Lf~vF 41 (64)
T PRK02624 32 AVFMVLFLVF 41 (64)
T ss_pred HHHHHHHHHH
Confidence 4555555433
Done!