Query 019943
Match_columns 333
No_of_seqs 164 out of 637
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02658 homogentisate 1,2-dio 100.0 3E-124 7E-129 926.7 28.7 305 5-311 126-432 (435)
2 PRK05341 homogentisate 1,2-dio 100.0 3E-124 7E-129 927.1 28.9 304 5-311 133-436 (438)
3 TIGR01015 hmgA homogentisate 1 100.0 1E-122 3E-127 914.0 28.6 301 5-308 127-429 (429)
4 PF04209 HgmA: homogentisate 1 100.0 2E-120 5E-125 901.0 22.3 300 5-308 125-424 (424)
5 KOG1417 Homogentisate 1,2-diox 100.0 5E-118 1E-122 846.1 20.9 305 4-311 133-438 (446)
6 COG3508 HmgA Homogentisate 1,2 100.0 2E-115 5E-120 840.0 25.0 300 5-310 125-424 (427)
7 TIGR03037 anthran_nbaC 3-hydro 98.7 4.5E-08 9.9E-13 87.4 7.3 58 22-80 44-105 (159)
8 PRK13264 3-hydroxyanthranilate 98.5 2.7E-07 5.8E-12 83.7 7.5 58 22-80 50-111 (177)
9 COG0662 {ManC} Mannose-6-phosp 98.5 6.1E-07 1.3E-11 76.2 8.0 61 20-81 51-111 (127)
10 PF07883 Cupin_2: Cupin domain 98.3 2.6E-06 5.7E-11 63.3 6.8 57 20-76 13-70 (71)
11 TIGR03404 bicupin_oxalic bicup 98.3 1.5E-05 3.3E-10 79.4 13.6 201 22-247 84-309 (367)
12 COG1917 Uncharacterized conser 97.8 8.3E-05 1.8E-09 62.6 7.9 57 22-78 60-118 (131)
13 smart00835 Cupin_1 Cupin. This 97.6 0.00087 1.9E-08 57.7 11.2 60 19-78 44-110 (146)
14 PF05899 Cupin_3: Protein of u 97.6 0.00013 2.8E-09 56.8 5.4 60 4-66 6-66 (74)
15 PRK09943 DNA-binding transcrip 97.5 0.00078 1.7E-08 60.2 10.5 58 21-78 123-181 (185)
16 PF01050 MannoseP_isomer: Mann 97.4 0.0013 2.9E-08 58.2 10.4 62 19-81 77-138 (151)
17 PF02311 AraC_binding: AraC-li 97.4 0.0011 2.4E-08 53.3 8.5 58 22-79 19-77 (136)
18 PF00190 Cupin_1: Cupin; Inte 97.3 0.0018 3.9E-08 55.6 8.9 66 20-86 49-128 (144)
19 PRK13290 ectC L-ectoine syntha 97.2 0.0035 7.5E-08 53.8 10.3 64 9-76 41-106 (125)
20 PRK04190 glucose-6-phosphate i 97.2 0.0032 6.9E-08 57.9 10.4 91 2-96 67-170 (191)
21 TIGR03214 ura-cupin putative a 97.2 0.0035 7.6E-08 59.7 10.9 60 20-79 74-134 (260)
22 PRK15457 ethanolamine utilizat 97.2 0.0025 5.4E-08 60.4 9.6 54 20-74 169-222 (233)
23 PRK11171 hypothetical protein; 97.2 0.0038 8.2E-08 59.6 10.7 59 21-79 78-137 (266)
24 PF03079 ARD: ARD/ARD' family; 97.1 0.0012 2.6E-08 58.9 6.5 45 24-68 90-139 (157)
25 TIGR03404 bicupin_oxalic bicup 97.1 0.0019 4.2E-08 64.5 8.5 57 20-76 260-322 (367)
26 TIGR01479 GMP_PMI mannose-1-ph 97.1 0.0041 8.8E-08 63.7 10.9 71 5-77 378-449 (468)
27 PF06249 EutQ: Ethanolamine ut 97.0 0.0011 2.3E-08 59.2 5.4 49 20-68 89-137 (152)
28 COG4766 EutQ Ethanolamine util 97.0 0.0023 5E-08 57.4 7.1 51 25-76 117-167 (176)
29 PRK10296 DNA-binding transcrip 96.7 0.0075 1.6E-07 56.3 8.5 59 21-79 38-96 (278)
30 PRK15460 cpsB mannose-1-phosph 96.6 0.014 3.1E-07 60.4 10.7 61 20-81 400-460 (478)
31 PF06052 3-HAO: 3-hydroxyanthr 96.6 0.01 2.2E-07 53.0 8.2 59 20-79 47-109 (151)
32 COG3837 Uncharacterized conser 96.4 0.012 2.6E-07 52.9 7.2 56 22-78 60-117 (161)
33 PF12973 Cupin_7: ChrR Cupin-l 96.3 0.011 2.5E-07 47.0 6.3 47 24-75 42-88 (91)
34 COG3450 Predicted enzyme of th 96.3 0.028 6.2E-07 48.1 8.8 69 5-76 45-114 (116)
35 TIGR03214 ura-cupin putative a 96.2 0.041 8.8E-07 52.5 10.4 79 2-82 178-257 (260)
36 COG4297 Uncharacterized protei 96.0 0.01 2.2E-07 52.6 4.7 45 20-64 58-105 (163)
37 COG2140 Thermophilic glucose-6 95.6 0.046 9.9E-07 51.2 7.5 56 23-79 100-160 (209)
38 PRK11171 hypothetical protein; 95.5 0.11 2.3E-06 49.7 9.9 62 22-83 201-263 (266)
39 PF11699 CENP-C_C: Mif2/CENP-C 95.2 0.24 5.2E-06 40.1 9.6 70 7-76 14-84 (85)
40 PF12852 Cupin_6: Cupin 95.0 0.04 8.6E-07 48.9 5.1 41 26-66 35-77 (186)
41 TIGR02451 anti_sig_ChrR anti-s 95.0 0.074 1.6E-06 49.5 7.1 72 5-85 129-201 (215)
42 COG4101 Predicted mannose-6-ph 94.9 0.23 4.9E-06 43.3 9.2 84 8-91 49-140 (142)
43 TIGR02297 HpaA 4-hydroxyphenyl 94.7 0.077 1.7E-06 49.5 6.4 43 26-68 44-86 (287)
44 PRK13502 transcriptional activ 94.7 0.083 1.8E-06 49.3 6.6 45 24-68 36-80 (282)
45 PRK13500 transcriptional activ 94.4 0.11 2.4E-06 49.9 7.0 44 23-66 65-108 (312)
46 COG1791 Uncharacterized conser 94.2 0.13 2.7E-06 47.1 6.3 46 24-69 93-143 (181)
47 PRK13501 transcriptional activ 94.1 0.2 4.4E-06 47.2 7.8 46 22-67 34-79 (290)
48 PRK13503 transcriptional activ 93.7 0.11 2.3E-06 48.1 5.1 47 22-68 31-77 (278)
49 PLN00212 glutelin; Provisional 93.6 0.26 5.6E-06 51.5 8.2 47 198-245 355-411 (493)
50 KOG2107 Uncharacterized conser 93.1 0.1 2.3E-06 47.4 3.8 61 24-84 91-160 (179)
51 PRK10371 DNA-binding transcrip 93.1 0.19 4.1E-06 48.4 5.8 47 22-68 42-88 (302)
52 PF05523 FdtA: WxcM-like, C-te 92.9 0.74 1.6E-05 39.6 8.6 68 9-76 37-109 (131)
53 PLN00212 glutelin; Provisional 92.5 1.1 2.3E-05 47.0 10.7 74 3-78 348-427 (493)
54 COG3257 GlxB Uncharacterized p 92.5 0.54 1.2E-05 44.8 7.7 62 18-79 75-137 (264)
55 PF02041 Auxin_BP: Auxin bindi 92.1 0.63 1.4E-05 42.0 7.3 56 24-79 62-128 (167)
56 TIGR00218 manA mannose-6-phosp 92.0 0.88 1.9E-05 44.1 8.9 66 4-75 234-300 (302)
57 PF14525 AraC_binding_2: AraC- 91.4 1.1 2.4E-05 37.7 7.9 50 29-79 58-107 (172)
58 PRK10572 DNA-binding transcrip 90.7 0.5 1.1E-05 44.4 5.6 42 25-66 48-89 (290)
59 PRK09685 DNA-binding transcrip 90.6 0.79 1.7E-05 43.1 6.9 41 28-68 73-113 (302)
60 PF06560 GPI: Glucose-6-phosph 90.3 1.4 3E-05 40.6 7.9 45 24-68 81-134 (182)
61 TIGR02272 gentisate_1_2 gentis 89.9 1.2 2.6E-05 44.5 7.8 54 22-76 266-319 (335)
62 PF04962 KduI: KduI/IolB famil 89.1 1.3 2.7E-05 42.7 7.0 56 23-79 44-108 (261)
63 PF09313 DUF1971: Domain of un 88.8 2.8 6.1E-05 33.8 7.7 48 28-75 27-81 (82)
64 PRK00924 5-keto-4-deoxyuronate 88.7 1.8 4E-05 42.2 7.9 65 21-86 69-136 (276)
65 KOG2757 Mannose-6-phosphate is 88.5 1.7 3.7E-05 44.1 7.6 52 19-70 346-398 (411)
66 PRK15131 mannose-6-phosphate i 85.2 4.9 0.00011 40.8 9.0 57 5-64 321-378 (389)
67 COG1482 ManA Phosphomannose is 85.0 4 8.7E-05 40.6 8.0 59 5-66 242-301 (312)
68 PF05726 Pirin_C: Pirin C-term 84.8 2.8 6E-05 34.4 5.8 59 23-85 17-75 (104)
69 PRK15186 AraC family transcrip 84.3 2 4.3E-05 41.8 5.6 40 28-67 40-80 (291)
70 PLN02288 mannose-6-phosphate i 83.0 3.4 7.3E-05 42.2 6.8 57 5-62 334-392 (394)
71 PF07385 DUF1498: Protein of u 82.9 9.6 0.00021 36.3 9.3 69 5-80 120-188 (225)
72 PF06719 AraC_N: AraC-type tra 82.8 12 0.00027 32.6 9.5 72 6-79 5-80 (155)
73 PRK13264 3-hydroxyanthranilate 80.2 3.3 7.1E-05 38.1 5.0 62 204-283 46-115 (177)
74 TIGR03037 anthran_nbaC 3-hydro 78.7 4.2 9.1E-05 36.8 5.2 64 202-283 38-109 (159)
75 COG3822 ABC-type sugar transpo 78.7 5.2 0.00011 37.6 5.8 69 28-98 137-208 (225)
76 KOG3995 3-hydroxyanthranilate 77.5 5.3 0.00011 38.1 5.6 61 18-79 45-109 (279)
77 PF08007 Cupin_4: Cupin superf 74.5 4.5 9.8E-05 39.5 4.6 63 5-68 114-200 (319)
78 PF06865 DUF1255: Protein of u 72.7 21 0.00044 29.8 7.3 56 20-77 35-92 (94)
79 PF02373 JmjC: JmjC domain, hy 68.0 5.7 0.00012 31.7 3.1 22 45-66 82-103 (114)
80 PRK04190 glucose-6-phosphate i 68.0 19 0.00042 33.2 6.9 81 166-246 48-139 (191)
81 TIGR02272 gentisate_1_2 gentis 66.5 17 0.00036 36.5 6.6 47 20-67 96-143 (335)
82 PRK15185 transcriptional regul 66.2 11 0.00023 37.6 5.1 39 28-66 51-89 (309)
83 PF04773 FecR: FecR protein; 64.1 41 0.00088 26.0 7.2 51 27-77 39-94 (98)
84 PRK10579 hypothetical protein; 63.7 41 0.0009 28.1 7.3 56 20-77 35-92 (94)
85 PF14499 DUF4437: Domain of un 59.5 37 0.00079 32.9 7.3 58 25-85 55-115 (251)
86 PF13621 Cupin_8: Cupin-like d 59.1 10 0.00022 34.1 3.3 23 45-67 210-232 (251)
87 COG3435 Gentisate 1,2-dioxygen 54.7 16 0.00034 36.7 4.0 36 28-63 114-150 (351)
88 COG1482 ManA Phosphomannose is 51.5 14 0.00031 36.7 3.2 32 43-80 157-188 (312)
89 PF02237 BPL_C: Biotin protein 46.1 25 0.00055 25.0 3.0 23 33-55 24-47 (48)
90 PF06339 Ectoine_synth: Ectoin 46.1 2.1E+02 0.0045 25.2 9.4 70 3-74 33-104 (126)
91 cd00214 Calpain_III Calpain, s 45.6 34 0.00073 29.7 4.3 14 44-57 111-124 (150)
92 PF05962 HutD: HutD; InterPro 43.4 24 0.00052 32.1 3.2 53 23-78 132-184 (184)
93 KOG0268 Sof1-like rRNA process 42.0 11 0.00023 38.7 0.7 17 315-331 85-101 (433)
94 PF00190 Cupin_1: Cupin; Inte 38.4 8.6 0.00019 32.8 -0.5 68 198-281 41-124 (144)
95 PF06052 3-HAO: 3-hydroxyanthr 37.5 16 0.00035 32.9 1.0 72 188-281 33-112 (151)
96 PF00027 cNMP_binding: Cyclic 37.1 79 0.0017 23.1 4.7 33 22-54 13-51 (91)
97 PHA02984 hypothetical protein; 36.9 1.2E+02 0.0026 29.9 6.9 53 26-78 93-149 (286)
98 KOG4046 RNase MRP and P, subun 36.1 52 0.0011 31.4 4.2 50 33-85 153-204 (224)
99 PRK15044 transcriptional regul 35.6 1.2E+02 0.0025 30.2 6.7 53 27-79 41-96 (295)
100 PRK13855 type IV secretion sys 34.5 61 0.0013 33.2 4.7 50 49-101 215-278 (376)
101 KOG0294 WD40 repeat-containing 34.0 18 0.0004 36.4 0.9 20 310-329 264-283 (362)
102 PF14499 DUF4437: Domain of un 33.4 30 0.00065 33.5 2.2 56 20-75 185-242 (251)
103 PRK12335 tellurite resistance 32.5 1.3E+02 0.0028 28.7 6.4 49 24-72 31-86 (287)
104 cd00038 CAP_ED effector domain 32.4 1.8E+02 0.004 21.5 6.2 36 21-56 30-71 (115)
105 smart00835 Cupin_1 Cupin. This 32.1 73 0.0016 27.2 4.2 49 198-247 37-95 (146)
106 COG3718 IolB Uncharacterized e 32.0 2.5E+02 0.0053 27.5 8.0 73 5-80 29-112 (270)
107 PF09092 Lyase_N: Lyase, N ter 31.1 18 0.00038 33.3 0.2 52 137-195 111-164 (178)
108 PF11142 DUF2917: Protein of u 30.9 1.3E+02 0.0028 22.9 4.9 44 22-66 13-58 (63)
109 PRK13290 ectC L-ectoine syntha 30.0 1.4E+02 0.003 25.5 5.6 49 198-248 42-96 (125)
110 KOG3706 Uncharacterized conser 29.4 32 0.0007 36.6 1.8 23 46-68 383-405 (629)
111 COG3824 Predicted Zn-dependent 28.7 6.1 0.00013 34.6 -3.0 33 141-177 5-37 (136)
112 PRK11753 DNA-binding transcrip 26.9 98 0.0021 27.1 4.3 58 20-78 32-101 (211)
113 PF10162 G8: G8 domain; Inter 26.7 99 0.0021 26.2 4.1 36 49-87 10-45 (125)
114 TIGR00218 manA mannose-6-phosp 26.2 35 0.00076 33.1 1.4 31 44-80 151-181 (302)
115 COG2850 Uncharacterized conser 25.8 55 0.0012 33.6 2.7 22 46-67 181-202 (383)
116 COG0361 InfA Translation initi 25.0 89 0.0019 25.0 3.2 26 31-56 16-55 (75)
117 PRK05467 Fe(II)-dependent oxyg 24.3 1.3E+02 0.0029 28.4 4.8 33 34-66 129-163 (226)
118 PRK13201 ureB urease subunit b 23.0 1.4E+02 0.0031 26.5 4.4 42 50-98 57-98 (136)
119 smart00100 cNMP Cyclic nucleot 22.8 1.8E+02 0.0039 21.6 4.5 23 20-42 29-51 (120)
120 PF12973 Cupin_7: ChrR Cupin-l 22.5 24 0.00051 27.9 -0.5 41 208-248 39-79 (91)
121 PRK09391 fixK transcriptional 22.1 2.5E+02 0.0055 25.5 6.1 38 22-59 52-95 (230)
122 PRK13918 CRP/FNR family transc 22.0 1.6E+02 0.0035 25.6 4.7 29 26-54 26-60 (202)
123 COG3435 Gentisate 1,2-dioxygen 21.2 2.7E+02 0.0059 28.2 6.4 43 25-67 280-322 (351)
124 smart00538 POP4 A domain found 20.5 3.6E+02 0.0078 22.0 6.0 49 33-85 29-79 (92)
125 KOG0500 Cyclic nucleotide-gate 20.0 1.3E+02 0.0028 32.2 4.1 46 5-53 330-378 (536)
No 1
>PLN02658 homogentisate 1,2-dioxygenase
Probab=100.00 E-value=3.1e-124 Score=926.74 Aligned_cols=305 Identities=85% Similarity=1.499 Sum_probs=297.7
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ 84 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~ 84 (333)
+|||+|+||+||++++|+|+|||+|||||+|+|+|+||+|.|+|+|||||||||||+|||+++++++|+||||++|+||+
T Consensus 126 ~ai~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g~~f~ 205 (435)
T PLN02658 126 YAIHMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFGGHFQ 205 (435)
T ss_pred cEEEEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEecCccEEEEecCCCCeeEEEEeecCCccc
Confidence 69999999999988999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCccccccCccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceecccccc
Q 019943 85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLV 164 (333)
Q Consensus 85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~~ 164 (333)
||||||||+|||||||||++|+|++|+.++++|+|++|++|++|+++|+|||||||||||||+||||||+||+||||+++
T Consensus 206 LPdlGpiG~nglanpRDF~~P~a~~ed~~~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~ 285 (435)
T PLN02658 206 LPDLGPIGANGLANPRDFLHPVAWFEDGSRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLF 285 (435)
T ss_pred CCCCCcccccCCCCHhHccCCccccccccCCcEEEEEEeCCeeEEEecCCCCceEeeecCcccceEechHHceecccccc
Confidence 99999999999999999999999999877667999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCCC
Q 019943 165 DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244 (333)
Q Consensus 165 dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~p 244 (333)
||+||||||||||||++||+++||||||+|||+++++||||||||||+||||||||+|+|+||++||+|||+||||+|+|
T Consensus 286 dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~p 365 (435)
T PLN02658 286 DHADPSINTVLTAPTDKPGVALADFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFLPGGASLHSCMTP 365 (435)
T ss_pred ccCCCCceEEEeccCCCCCccccceEEECCccccccCccCCCCCccchhhhhhhhcccccccccCCccCCeeeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCChhHHHHHHhcCCCC--CCceeecceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCCCCC
Q 019943 245 HGPDTKTYEATIARGSEA--GPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE 311 (333)
Q Consensus 245 HGP~~~~~e~a~~~~~~~--~P~~~~~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f~~~ 311 (333)
||||+++||+|+++ ++ +|+|+++||||||||+++|++|+||++++.+|++|++||++|+++|+++
T Consensus 366 HGPd~~~~e~a~~~--~~~~~p~k~~~~lAfMfEt~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~ 432 (435)
T PLN02658 366 HGPDTATYEATIAR--PCADAPSKLTGTLAFMFESSLIPRVCPWALESPFRDRDYYQCWIGLKSHFSRE 432 (435)
T ss_pred CCCCHHHHHhhhcc--cccCCCeeccceEEEEEEccccccccHHHHhCccccchHHHHHHHHhhcCCcc
Confidence 99999999999988 66 9999999999999999999999999998778999999999999999764
No 2
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=100.00 E-value=3.3e-124 Score=927.10 Aligned_cols=304 Identities=60% Similarity=1.097 Sum_probs=297.1
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ 84 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~ 84 (333)
+|||+|+||+||++++|+|+|||||||||+|+|+|+||+|.|+|+|||||||||||+|||+++++++|+||||++|+||+
T Consensus 133 ~ai~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~~f~ 212 (438)
T PRK05341 133 MAIHLYAANRSMQDRYFYNADGELLIVPQQGRLRLATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGAPFR 212 (438)
T ss_pred cEEEEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCCccc
Confidence 68999999999988999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCccccccCccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceecccccc
Q 019943 85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLV 164 (333)
Q Consensus 85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~~ 164 (333)
||||||||+|||||||||++|+|+||+.+ ++|+|++|++|++|+++|+|||||||||||||+||||||+||+||||+++
T Consensus 213 LPdlGpiG~nglanpRDF~~P~a~~ed~~-~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~ 291 (438)
T PRK05341 213 LPDLGPIGANGLANPRDFLTPVAAFEDRE-GPFELVAKFGGRLWRAEIDHSPLDVVAWHGNYAPYKYDLRRFNTIGSISF 291 (438)
T ss_pred CCCCCcccccCCCChhHcCCCcchhcccC-CCEEEEEEeCCeeEEEecCCCCceEeeecCcccceEeehhheeecccccc
Confidence 99999999999999999999999998854 48999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCCC
Q 019943 165 DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244 (333)
Q Consensus 165 dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~p 244 (333)
||+||||||||||||++||+++||||||+|||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|
T Consensus 292 dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~p 371 (438)
T PRK05341 292 DHPDPSIFTVLTSPSDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAKAEGFVPGGASLHNCMSP 371 (438)
T ss_pred ccCCCCceEEEeccCCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhccccccccccCcCCCeeeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCChhHHHHHHhcCCCCCCceeecceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCCCCC
Q 019943 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE 311 (333)
Q Consensus 245 HGP~~~~~e~a~~~~~~~~P~~~~~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f~~~ 311 (333)
||||+++||+|+++ +|+|+|+++||||||||+++|++|+||++++.+|++|++||++|+++|+++
T Consensus 372 HGPd~~a~e~a~~~--~l~p~k~~~~lAfMfET~~~l~~t~~A~~~~~~d~~Y~~~W~~l~~~f~~~ 436 (438)
T PRK05341 372 HGPDAETFEKASNA--DLKPHKIDNTMAFMFETRYPIRPTRFALETPQLQADYDDCWQGLKKHFDPE 436 (438)
T ss_pred CCCCHHHHHHhhcc--ccCCccccceEEEEEEccccccccHHHHhCccccccHHHHHHhHhhcCCCC
Confidence 99999999999999 999999999999999999999999999998778999999999999999764
No 3
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=100.00 E-value=1.3e-122 Score=914.00 Aligned_cols=301 Identities=61% Similarity=1.110 Sum_probs=291.9
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ 84 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~ 84 (333)
+|||+|+||+||++++|+|+|||+|||||+|+|+|+||+|.|+|+|||||||||||+|||+++ +++|+||||++|+||+
T Consensus 127 ~ai~iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~-gp~rgyi~E~~g~~f~ 205 (429)
T TIGR01015 127 LAIHIYLCNASMENRAFYNADGDFLIVPQQGALLITTEFGRLLVEPNEICVIPRGVRFRVTVL-EPARGYICEVYGAHFQ 205 (429)
T ss_pred ceEEEEeCCCCcccceeeccCCCEEEEEEeCcEEEEEeccceEecCCCEEEecCccEEEEeeC-CCceEEEEeccCCccc
Confidence 689999999999889999999999999999999999999999999999999999999999985 7999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCccccccCc-cccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceeccccc
Q 019943 85 LPDLGPIGANGLAAPRDFLVPTAWFEEGS-RLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVL 163 (333)
Q Consensus 85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~-~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~ 163 (333)
||||||||+|||||||||++|+|+||+++ .++|+|++|++|++|+++|+|||||||||||||+||||||+||+||||++
T Consensus 206 LPdlGpiG~nglan~RDF~~P~a~fed~~~~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs 285 (429)
T TIGR01015 206 LPDLGPIGANGLANPRDFEAPVAAFEDREVPGPYTVINKFQGSLFAAKQDHSPFDVVAWHGNYVPYKYDLKRFNVINSVS 285 (429)
T ss_pred CCCCCcccccCCCCHHHcCCCccchhccccCCCeEEEEEeCCeeEEEecCCCCcceeeecCcccceEeehhheeeccccc
Confidence 99999999999999999999999998743 23799999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCC
Q 019943 164 VDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMT 243 (333)
Q Consensus 164 ~dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~ 243 (333)
+||+||||||||||||++||+++||||||+|||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+
T Consensus 286 ~dH~dPSI~tvltaps~~pg~av~dFviFpPRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SlH~~~~ 365 (429)
T TIGR01015 286 FDHPDPSIFTVLTAPSDRPGTAIADFVIFPPRWLVAEKTFRPPYYHRNCMSEFMGLITGAYDAKEGGFVPGGGSLHNMMT 365 (429)
T ss_pred cccCCCCceEEEeccCCCCCceEEEEEeeCCcccCCCCccCCCCCccchhhhhhhhcccccccccCCcCCCeeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCCCChhHHHHHHhcCCCCCCceee-cceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCC
Q 019943 244 PHGPDTKTYEATIARGSEAGPYKIT-DTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 308 (333)
Q Consensus 244 pHGP~~~~~e~a~~~~~~~~P~~~~-~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f 308 (333)
|||||++++|+|+++ +++|++++ ++|||||||+++|++|+||++++.+|++|++||++|+++|
T Consensus 366 pHGPd~~~~e~a~~~--~l~p~~~~e~tlAfMfEt~~~l~~t~~A~~~~~~~~~Y~~~W~~l~~~f 429 (429)
T TIGR01015 366 PHGPDFDCFEKASNA--KLKPERIADGTMAFMFESSLSLAVTKWGATCQKLQEDYYKCWQPLKRHF 429 (429)
T ss_pred CCCCCHHHHHHhhcc--ccCceEecCceEEEEEEccccccccHHHhhCccccccHHHHhhhhccCC
Confidence 999999999999999 89999984 7899999999999999999998778999999999999987
No 4
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=100.00 E-value=2.1e-120 Score=901.01 Aligned_cols=300 Identities=60% Similarity=1.079 Sum_probs=200.3
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ 84 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~ 84 (333)
+|||+|+||+||++++|+|+|||||+|||+|+|+|+||+|.|+|+|||||||||||+||++++ +++|+||||++|+||+
T Consensus 125 ~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E~~~~~~~ 203 (424)
T PF04209_consen 125 VAIHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELP-GPARGYIIENFGSHFR 203 (424)
T ss_dssp EEEEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S-SSEEEEEEEEES--EE
T ss_pred cEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeC-CCceEEEEEcCCCeEE
Confidence 799999999999888999999999999999999999999999999999999999999999997 8999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCccccccCccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceecccccc
Q 019943 85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLV 164 (333)
Q Consensus 85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~~ 164 (333)
|||+||||+|||||+|||++|+|+++++++ +|+|++|++|++++++|+|||||||||||||+||||||+||+||||++|
T Consensus 204 lPe~G~iG~ngla~~RDf~~P~a~~~d~~~-~~~v~~K~~G~l~~~~~~hsPfDVVgW~Gn~~Pykynl~~F~pi~s~~~ 282 (424)
T PF04209_consen 204 LPELGPIGANGLANPRDFRTPVAAFEDDEG-EWEVVVKFRGGLFSATYPHSPFDVVGWHGNYYPYKYNLRDFEPINSVSY 282 (424)
T ss_dssp ----GGGTTS-BS-GGGEEEE-------EE-EEEEEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B----SSS
T ss_pred ecCcCccccCCCCChhhhcCCCcccccCCC-CEEEEEEECCeeEEEEeCCCchheeeecCccccEEEehHHhhhhcceec
Confidence 999999999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCCC
Q 019943 165 DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244 (333)
Q Consensus 165 dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~p 244 (333)
||+||||||||||||+.+|+++||||||+|||+++++||||||||||+|||+|+||+|+|++|++||.|||+||||+|+|
T Consensus 283 dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~~~gf~pGg~SLH~~~~p 362 (424)
T PF04209_consen 283 DHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLVAEHTFRPPYYHRNVMSEFMGLIRGNYDASRDGFEPGGISLHPCGTP 362 (424)
T ss_dssp S---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE--TTS--S---B--SSEEEEEEEE-----------TT-EEEE-TT--
T ss_pred ccCCCceeEEEeccCCCCCceEEEEEeeCCcccccCCCccCCCCCcceeeeeeeeeccccccccCCcCCCceeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCChhHHHHHHhcCCCCCCceeecceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCC
Q 019943 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF 308 (333)
Q Consensus 245 HGP~~~~~e~a~~~~~~~~P~~~~~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f 308 (333)
||||++++|+|+++ +++|++.+++|||||||++||++|++|++++.+|++|++||++|+++|
T Consensus 363 HGP~~~~~e~A~~~--~l~p~~~~e~lAfM~eT~~pl~~t~~A~~~~~~d~~Y~~~W~~l~~~F 424 (424)
T PF04209_consen 363 HGPDPGAFEKASEA--ELKPEKTDETLAFMFETRRPLRVTEWALECEKLDPDYADSWQGLKKHF 424 (424)
T ss_dssp B---HHHHHHHHHS------EEEST-EEEEEEESS--EE-HHHHH-------------------
T ss_pred CCCChHHhhhhhhc--cCCceEeccceEEEEeccccccccHHHHhCccccccHHHHHhhHhccC
Confidence 99999999999999 999999866799999999999999999999777999999999999998
No 5
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-118 Score=846.06 Aligned_cols=305 Identities=69% Similarity=1.216 Sum_probs=299.4
Q ss_pred eEEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCce
Q 019943 4 LFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHF 83 (333)
Q Consensus 4 ~~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~ 83 (333)
-||||+|.||.||++++|+|+|||+|+++|+|.|.|+||+|+|.|.|+|++|||+|+||.+.+. +++|+||+|++|.||
T Consensus 133 GlAIH~~~cN~sM~~safyNsDGDFLiVPQ~G~L~I~TEfGrllV~P~EI~VIpqG~RFsi~v~-~~sRGYilEvYg~HF 211 (446)
T KOG1417|consen 133 GLAIHIYSCNTSMENSAFYNSDGDFLIVPQQGRLWITTEFGRLLVTPNEIAVIPQGIRFSIDVP-GPSRGYILEVYGAHF 211 (446)
T ss_pred ceEEEEEeecCCcccceeecCCCCEEEecccCcEEEEeeccceeecccceEEeecccEEEEecC-CCCcceEEEEeccee
Confidence 4899999999999999999999999999999999999999999999999999999999999985 799999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCccCCccccccCccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceeccccc
Q 019943 84 QLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVL 163 (333)
Q Consensus 84 ~lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~ 163 (333)
+||||||||+|||||||||++|+|||||+...+|+||.|++|++++++|+|||||||||||||.||||||.+|++||+++
T Consensus 212 ~LPDLGPIGANGLAnpRDF~~PvAWfeD~~vpeytii~K~qG~lF~AKQ~~spF~VVaWHGNYvPyKYdLkkFmviNtV~ 291 (446)
T KOG1417|consen 212 QLPDLGPIGANGLANPRDFLAPVAWFEDRLVPEYTIINKFQGELFTAKQDHSPFNVVAWHGNYVPYKYDLKKFMVINTVS 291 (446)
T ss_pred ecCCCCcccccccCCchhcccchhhhhccCCccceeeecccceeEEeccCCCcceEEEecCcccccccchhheeEEeeEe
Confidence 99999999999999999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCC
Q 019943 164 VDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMT 243 (333)
Q Consensus 164 ~dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~ 243 (333)
+||.||||||||||||..||+|++|||||||||.++++|||||||||||||||||+|+|.|+||.+||.|||+|||++|+
T Consensus 292 fDH~DPSIfTVLTaps~k~G~AiaDFVIFPPRW~vae~TFRPPYYHRNCMSEfMGLI~G~YEAK~~GF~pGG~sLHS~MT 371 (446)
T KOG1417|consen 292 FDHCDPSIFTVLTAPSVKPGVAIADFVIFPPRWGVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKEDGFLPGGASLHSMMT 371 (446)
T ss_pred cccCCCcceeEEecCCCCCCcEEeeeEEeCCcccccccccCCchhhhhHHHHHHHHhhhhhhhcccCcCCCCcchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHhcCCCCCCcee-ecceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCCCCC
Q 019943 244 PHGPDTKTYEATIARGSEAGPYKI-TDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE 311 (333)
Q Consensus 244 pHGP~~~~~e~a~~~~~~~~P~~~-~~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f~~~ 311 (333)
|||||..+||+|++. .+.|+++ +++|||||||+..|++|+|+++++.+|++|++||+.|++||...
T Consensus 372 PHGPD~~cfE~as~~--~l~p~rva~GTmaFMFESsL~~avt~Wg~~~~~lD~~Yy~cW~~LK~hFt~~ 438 (446)
T KOG1417|consen 372 PHGPDTTCFEAASNV--KLMPERVAEGTMAFMFESSLSLAVTKWGLESQFLDHDYYKCWQPLKSHFTRI 438 (446)
T ss_pred CCCCCchHHHHhhhc--ccCchhhccceeeeeehhhhhHHHhhhhhhcccccHHHHHHHHHHHhhCccc
Confidence 999999999999999 8999988 99999999999999999999999999999999999999999864
No 6
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.5e-115 Score=840.05 Aligned_cols=300 Identities=57% Similarity=0.993 Sum_probs=294.4
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ 84 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~ 84 (333)
++||+|.+|+||.+++|||+|||+|+|||+|+++|.||+|.|+|+||||+|||||++||+++.++++|+|+||++|..|+
T Consensus 125 ~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~En~ga~~~ 204 (427)
T COG3508 125 VAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCENYGAKFR 204 (427)
T ss_pred eEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEeeceEEecCCcEEEeeCCceEEEEecCCceEEEEEeecccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCCccccccCccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceecccccc
Q 019943 85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLV 164 (333)
Q Consensus 85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~~ 164 (333)
|||+||||+|||||||||++|+|+++|.++ +++|++|+.|+||.++.+|||||||||||||+||||||++|+||++++|
T Consensus 205 lpe~G~ig~n~lanpRDf~tPvar~ed~e~-~~qlvvK~~g~l~~~e~~hsPlDVVaWhGnl~Pykydl~~f~pi~t~~~ 283 (427)
T COG3508 205 LPELGPIGANGLANPRDFKTPVARYEDSEG-PTQLVVKTHGGLWAVELDHSPLDVVAWHGNLAPYKYDLRDFNPIGTISY 283 (427)
T ss_pred cccccccccccccChhhccCceeeecccCC-CeEEEEEecCcEEEEecCCCCceeEeecCcccceEeeeeccccccceec
Confidence 999999999999999999999999999655 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCCC
Q 019943 165 DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244 (333)
Q Consensus 165 dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~p 244 (333)
||+|||||||||+||++||+++||||||||||+++|+||||||||||+||||||||+|+|+||++||.|||+|||+||..
T Consensus 284 dhPdPSifTvltapsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~ydak~~GfvpGg~sLH~~m~~ 363 (427)
T COG3508 284 DHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQYDAKAEGFVPGGASLHNCMSA 363 (427)
T ss_pred cCCCCceEEEEecCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhchhhhhccCcCcCcceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCChhHHHHHHhcCCCCCCceeecceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCCCC
Q 019943 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSY 310 (333)
Q Consensus 245 HGP~~~~~e~a~~~~~~~~P~~~~~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f~~ 310 (333)
||||++++|||+++ +|+|+|+++|||||||||.++++|.+|++.+.+|.+|..||+++ |++
T Consensus 364 HGPd~~afeka~~~--~l~p~k~d~tmAfMfETr~~~~~s~~A~E~~~~Q~~Y~~cW~~l---f~~ 424 (427)
T COG3508 364 HGPDPSAFEKALNA--RLKPHKIDDTMAFMFETRKVLRPSRYAAEIDALQDDYDACWQGL---FNK 424 (427)
T ss_pred cCCChHHHHHhhhc--ccCcccccceEEEEEEeccccchhHHhhhhcccccchhhhhhhc---ccc
Confidence 99999999999999 89999999999999999999999999999988999999999998 654
No 7
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.68 E-value=4.5e-08 Score=87.36 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=52.0
Q ss_pred ecCCCCEEEEEEeCeEEEEEecc----eEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecC
Q 019943 22 CNADGDFLVVPQKGRLWIATECG----KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 80 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G----~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g 80 (333)
-..++||+|++++|++.|+...+ .+.+++||+++||+|+.|++.. .+++.+|+||...
T Consensus 44 H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r-~~~t~~LvIE~~r 105 (159)
T TIGR03037 44 HDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR-PAGSIGLVIERKR 105 (159)
T ss_pred ccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc-CCCcEEEEEEeCC
Confidence 33459999999999999998774 8999999999999999999987 5689999999873
No 8
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.51 E-value=2.7e-07 Score=83.74 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=51.9
Q ss_pred ecCCCCEEEEEEeCeEEEEEec----ceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecC
Q 019943 22 CNADGDFLVVPQKGRLWIATEC----GKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 80 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~----G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g 80 (333)
-...+||+|++++|++.|+.++ ..+.+++||+++||+|+.|++.. .+++.+++||..+
T Consensus 50 H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~r 111 (177)
T PRK13264 50 HYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERKR 111 (177)
T ss_pred ccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeCC
Confidence 3467999999999999999965 37999999999999999999987 5689999999974
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=6.1e-07 Score=76.19 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=54.8
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCC
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 81 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~ 81 (333)
.=.|.+-||.|+|++|++.+..+...+.|++||.++||+|+.||+.- .|...+.++|....
T Consensus 51 ~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N-~G~~~L~liei~~p 111 (127)
T COG0662 51 LHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRN-TGKIPLVLIEVQSP 111 (127)
T ss_pred cccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEc-CCCcceEEEEEecC
Confidence 34677799999999999999999999999999999999999999986 55789999999754
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.28 E-value=2.6e-06 Score=63.27 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=47.9
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC-CCeEEEEE
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD-GPSRGYIA 76 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~-~~~r~~ii 76 (333)
.-+|.+.++++++++|++.+..+.....+++||.+.||+|+.|++.... ++++.+.|
T Consensus 13 ~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 13 PHRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred CEECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 4467777799999999999998888999999999999999999997643 35555543
No 11
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.26 E-value=1.5e-05 Score=79.42 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=113.4
Q ss_pred ecCCCCEEEEEEeCeEEEEEe--cceE---EecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCceecCCCCCCCCCCC
Q 019943 22 CNADGDFLVVPQKGRLWIATE--CGKL---EVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGL 96 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te--~G~l---~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~lPe~GpiG~ngl 96 (333)
.| .++|+++|++|++++... .|+. .|++||.++||+|..|++...+++++.+++=.. +.|.-+.. ++....+
T Consensus 84 wH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~-~~f~~~~~-~~~~~~l 160 (367)
T TIGR03404 84 WH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDD-GNFSEDGT-FLVTDWL 160 (367)
T ss_pred cC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCC-cccCCcce-eeHHHHH
Confidence 45 578999999999999986 3554 499999999999999999876556765553222 23443331 1122222
Q ss_pred C-CCCC-----ccCCccccccC-ccccEEEEEEECCceEEEEcCCCCCeEeeecCC-ccceEeccCCceeccccccccCC
Q 019943 97 A-APRD-----FLVPTAWFEEG-SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGN-YVPYKYDLSKFCPFNTVLVDHGD 168 (333)
Q Consensus 97 a-~~RD-----f~~P~a~~e~~-~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~-~~Pykynl~~F~pi~s~~~dH~d 168 (333)
+ .|.+ |..+...++.- ....|.+.-+.-|.+- .....+| -|. -.||||++.+-.|.....
T Consensus 161 ~~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~p~~~~g----- 228 (367)
T TIGR03404 161 AHTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLD-QEAVTGP------AGEVPGPFTYHLSEQKPKQVPG----- 228 (367)
T ss_pred HhCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccc-cccCcCC------CCCCCccEEEEhhhCCceecCC-----
Confidence 2 2222 22222111111 1112332211111111 0011122 233 236899999998864432
Q ss_pred CCcceEEeecCCCC---CceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeeccccccc---------CCcCCCee
Q 019943 169 PSINTVLTAPTDKP---GVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKA---------DGFLPGGA 236 (333)
Q Consensus 169 Psi~tvlta~s~~~---g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~---------~g~~pG~~ 236 (333)
=++ ..++++ ..| +++++.+. ..++..|+|=.|.| ..|+++++.|+....- ..+.+|.+
T Consensus 229 G~~-~~~~~~-~~p~~~~~s~~~~~-------l~PG~~~~~H~H~~-~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~ 298 (367)
T TIGR03404 229 GTV-RIADST-NFPVSKTIAAAIVT-------VEPGAMRELHWHPN-ADEWQYFIQGQARMTVFAAGGNARTFDYQAGDV 298 (367)
T ss_pred ceE-EEEChh-hccCcceEEEEEEE-------ECCCCccCCeeCcC-CCeEEEEEEEEEEEEEEecCCcEEEEEECCCCE
Confidence 122 222221 122 23232222 67999999966666 3699999999874431 13899999
Q ss_pred eeecCCCCCCC
Q 019943 237 SLHSCMTPHGP 247 (333)
Q Consensus 237 SlHp~g~pHGP 247 (333)
.+-|.|..|.=
T Consensus 299 ~~iP~g~~H~i 309 (367)
T TIGR03404 299 GYVPRNMGHYV 309 (367)
T ss_pred EEECCCCeEEE
Confidence 99999999954
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.81 E-value=8.3e-05 Score=62.62 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=47.1
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCC--eEEEEEee
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGP--SRGYIAEI 78 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~--~r~~iiE~ 78 (333)
+|..+++.++|++|+++++.+....++++||+++||+|+.|.+...+.. ..+.++..
T Consensus 60 ~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 60 THPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred cCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 3445999999999999999996679999999999999999999875544 45555554
No 13
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=97.60 E-value=0.00087 Score=57.72 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=48.5
Q ss_pred CceecCCCCEEEEEEeCeEEEEEecc------eEEecCCeEEEECCccEEEeeCCC-CCeEEEEEee
Q 019943 19 CAFCNADGDFLVVPQKGRLWIATECG------KLEVSPGEIAVLPQGFRFAVSLPD-GPSRGYIAEI 78 (333)
Q Consensus 19 ~~~~n~DgDeL~~v~~G~l~l~te~G------~l~v~pGd~~VIPRG~~~Rv~~~~-~~~r~~iiE~ 78 (333)
..-+|.+++|++++++|++.+..... ...+++||.++||+|+.|+....+ .+++.+++..
T Consensus 44 ~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~ 110 (146)
T smart00835 44 PPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNT 110 (146)
T ss_pred CCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEec
Confidence 35567778999999999999998654 899999999999999999987643 3566665544
No 14
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.59 E-value=0.00013 Score=56.79 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=47.8
Q ss_pred eEEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecce-EEecCCeEEEECCccEEEeeC
Q 019943 4 LFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 4 ~~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~-l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
.+.+.+|.|+..--+ .+-+.||+++|++|+++|.-+.|. .++++||.+++|+|.+-+++.
T Consensus 6 ~~~~g~w~~~pg~~~---~~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 6 VFSAGVWECTPGKFP---WPYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp SEEEEEEEEECEEEE---EEESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred CEEEEEEEECCceeE---eeCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence 467788888775321 233449999999999999998884 999999999999999888765
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=97.55 E-value=0.00078 Score=60.20 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=50.9
Q ss_pred eecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCC-CCCeEEEEEee
Q 019943 21 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEI 78 (333)
Q Consensus 21 ~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~-~~~~r~~iiE~ 78 (333)
..+..++|+++|++|++.++.......+++||.+.||.++.|++... +.+++++++..
T Consensus 123 ~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 123 RIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred ccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 34668899999999999999999999999999999999999999875 34688888753
No 16
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.44 E-value=0.0013 Score=58.20 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=54.6
Q ss_pred CceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCC
Q 019943 19 CAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 81 (333)
Q Consensus 19 ~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~ 81 (333)
.+=+|...+|.++|.+|++.+..+.....+.+||.+.||+|+.||+... +..-+.+||.-.+
T Consensus 77 Slq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~-g~~~L~~IEVq~G 138 (151)
T PF01050_consen 77 SLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENP-GKTPLEIIEVQTG 138 (151)
T ss_pred ceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECC-CCcCcEEEEEecC
Confidence 3668999999999999999999999999999999999999999999863 3556888998644
No 17
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.38 E-value=0.0011 Score=53.28 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=43.3
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCC-CeEEEEEeec
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG-PSRGYIAEIF 79 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~-~~r~~iiE~~ 79 (333)
...+.=+++++.+|++.+..+.....++|||+++||.|..|+....++ +.+.+.|-..
T Consensus 19 h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 19 HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 457788899999999999999999999999999999999999987554 6676666654
No 18
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=97.25 E-value=0.0018 Score=55.60 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=47.6
Q ss_pred ceecCCCCEEEEEEeCeEEEEEec--c--------eE--EecCCeEEEECCccEEEeeCC--CCCeEEEEEeecCCceec
Q 019943 20 AFCNADGDFLVVPQKGRLWIATEC--G--------KL--EVSPGEIAVLPQGFRFAVSLP--DGPSRGYIAEIFGTHFQL 85 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~--G--------~l--~v~pGd~~VIPRG~~~Rv~~~--~~~~r~~iiE~~g~~~~l 85 (333)
-.+| +++++++|++|++++..-. + .- ++++||+++||+|..|.+... ++...++++.......+|
T Consensus 49 Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~l 127 (144)
T PF00190_consen 49 PHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQL 127 (144)
T ss_dssp EEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGES
T ss_pred eeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcccC
Confidence 4467 9999999999999976532 2 12 399999999999999999876 345577777776544443
Q ss_pred C
Q 019943 86 P 86 (333)
Q Consensus 86 P 86 (333)
|
T Consensus 128 ~ 128 (144)
T PF00190_consen 128 P 128 (144)
T ss_dssp S
T ss_pred C
Confidence 3
No 19
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=97.23 E-value=0.0035 Score=53.80 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=49.0
Q ss_pred EEeeCCCCCCCceecCCCCEEEEEEeCeEEEE-Ee-cceEEecCCeEEEECCccEEEeeCCCCCeEEEEE
Q 019943 9 RYTANKSMDNCAFCNADGDFLVVPQKGRLWIA-TE-CGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 76 (333)
Q Consensus 9 ~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~-te-~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ii 76 (333)
.+..+++.+ ..++.. +|.++|++|++.+. .+ .....+++||.+++|.+..|++... ++++++.+
T Consensus 41 ~l~pG~~~~--~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v 106 (125)
T PRK13290 41 TIYAGTETH--LHYKNH-LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLRAG-EDMRLVCV 106 (125)
T ss_pred EECCCCccc--ceeCCC-EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEEcC-CCEEEEEE
Confidence 344444443 233322 58999999999999 75 7789999999999999999999975 56776655
No 20
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=97.20 E-value=0.0032 Score=57.88 Aligned_cols=91 Identities=21% Similarity=0.221 Sum_probs=61.8
Q ss_pred ceeEEEEEEeeCCC-----CCCCceecC--CCCEEEEEEeCeEEEEEecc-----eEEecCCeEEEECCccEEEeeCC-C
Q 019943 2 DMLFTCNRYTANKS-----MDNCAFCNA--DGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFAVSLP-D 68 (333)
Q Consensus 2 ~~~~ai~~y~~~~s-----M~~~~~~n~--DgDeL~~v~~G~l~l~te~G-----~l~v~pGd~~VIPRG~~~Rv~~~-~ 68 (333)
++.+++.+...++. |.... +|. +.+|++++++|++.+..+.. ...++|||.+.||+|+.||+.-+ +
T Consensus 67 ~L~~g~t~l~PG~~g~e~~mt~gH-~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~ 145 (191)
T PRK04190 67 DLNFGTTRLYPGKVGDEYFMTKGH-FHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGD 145 (191)
T ss_pred ceEEEEEEECCCcEecccccCCCe-EcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCC
Confidence 34566666666664 33323 455 55699999999999887643 48899999999999999998754 3
Q ss_pred CCeEEEEEeecCCceecCCCCCCCCCCC
Q 019943 69 GPSRGYIAEIFGTHFQLPDLGPIGANGL 96 (333)
Q Consensus 69 ~~~r~~iiE~~g~~~~lPe~GpiG~ngl 96 (333)
.+.+.+.+-+.. .=.++|+|.++|-
T Consensus 146 epl~fl~v~p~~---~~~dY~~i~~~g~ 170 (191)
T PRK04190 146 EPLVFLACYPAD---AGHDYGTIAEKGF 170 (191)
T ss_pred CCEEEEEEEcCC---cccccHHHHhcCC
Confidence 355655555442 2245677765543
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.19 E-value=0.0035 Score=59.69 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=51.0
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC-CCCCeEEEEEeec
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL-PDGPSRGYIAEIF 79 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~-~~~~~r~~iiE~~ 79 (333)
.+.++..+|+++|++|+++|+.+.....+++||++.+|.|+.|++.- .+.++++++++..
T Consensus 74 ~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~ 134 (260)
T TIGR03214 74 GFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKKR 134 (260)
T ss_pred CCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEee
Confidence 34455558999999999999988888999999999999999999964 3558999998864
No 22
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.18 E-value=0.0025 Score=60.38 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=45.3
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEE
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGY 74 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ 74 (333)
+-.+-+.||++++++|+++++.+.....++|||.++||+|..|....++ .+|.+
T Consensus 169 f~wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~-~aRfl 222 (233)
T PRK15457 169 FPWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPS-SVRFL 222 (233)
T ss_pred cceeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCC-CeeEE
Confidence 3467888999999999999999988899999999999999996664433 56553
No 23
>PRK11171 hypothetical protein; Provisional
Probab=97.15 E-value=0.0038 Score=59.60 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=50.4
Q ss_pred eecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC-CCCCeEEEEEeec
Q 019943 21 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL-PDGPSRGYIAEIF 79 (333)
Q Consensus 21 ~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~-~~~~~r~~iiE~~ 79 (333)
+.+..++|+++|++|++.++.+.....+++||.+.+|.++.|++.- .+.+++++++...
T Consensus 78 ~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~ 137 (266)
T PRK11171 78 EPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKR 137 (266)
T ss_pred CCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcC
Confidence 3445679999999999999999889999999999999999999974 4557888888643
No 24
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.11 E-value=0.0012 Score=58.92 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=34.4
Q ss_pred CCCCEEEEEEeCeEEEEEecc-----eEEecCCeEEEECCccEEEeeCCC
Q 019943 24 ADGDFLVVPQKGRLWIATECG-----KLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~te~G-----~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
.+.||+-++++|++.+..+.+ +|.+++||+++||+|+.||..+.+
T Consensus 90 H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 90 HEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp ESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred cChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 456899999999998888764 389999999999999999999854
No 25
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.10 E-value=0.0019 Score=64.53 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=45.9
Q ss_pred ceecCCCCEEEEEEeCeEEEEEec-----ceEEecCCeEEEECCccEEEeeCC-CCCeEEEEE
Q 019943 20 AFCNADGDFLVVPQKGRLWIATEC-----GKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIA 76 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~-----G~l~v~pGd~~VIPRG~~~Rv~~~-~~~~r~~ii 76 (333)
.=.|...||++|+++|++++.... -...|++||.++||+|..|+++-. +++++.|.+
T Consensus 260 ~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 260 LHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEV 322 (367)
T ss_pred CeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEE
Confidence 335999999999999999998642 246899999999999999999854 345666655
No 26
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.08 E-value=0.0041 Score=63.74 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=53.9
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCC-CCCeEEEEEe
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAE 77 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~-~~~~r~~iiE 77 (333)
+..-....+.++. .-+|...+|.++|++|++.+..+.....+++||.+.||+|+.|++.-. +.+++++.+.
T Consensus 378 ~~~~~i~PG~~~~--~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 378 VKRITVKPGEKLS--LQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred EEEEEECCCCccC--ccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 3344445555443 346666788889999999999999999999999999999999999853 3355555553
No 27
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.03 E-value=0.0011 Score=59.17 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=39.8
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
+-+.-+=||+.+|++|+|.|..+..++..+|||.+.||+|.+-+...++
T Consensus 89 f~wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~ 137 (152)
T PF06249_consen 89 FPWTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPD 137 (152)
T ss_dssp EEEE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEE
T ss_pred ccEEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCC
Confidence 4456677999999999999999988899999999999999998887644
No 28
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0023 Score=57.40 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=43.2
Q ss_pred CCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEE
Q 019943 25 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 76 (333)
Q Consensus 25 DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ii 76 (333)
+=||+=+|++|+|.+.++.+++.-+|||++.||||-.-.+.. .+++|.+-+
T Consensus 117 ~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst-~gea~flyv 167 (176)
T COG4766 117 NYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFST-TGEAKFLYV 167 (176)
T ss_pred cccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEec-cceEEEEEE
Confidence 458999999999999999999999999999999998777765 446765543
No 29
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.70 E-value=0.0075 Score=56.28 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=49.1
Q ss_pred eecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeec
Q 019943 21 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 79 (333)
Q Consensus 21 ~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~ 79 (333)
....|.-|++++.+|++.+..+.....+++||+++||.|..|+.....+..+++.+...
T Consensus 38 ~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~~l~~~ 96 (278)
T PRK10296 38 LHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGIS 96 (278)
T ss_pred CcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeeeCCCcEEEEEEec
Confidence 34558899999999999999999999999999999999999987543445677766543
No 30
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.63 E-value=0.014 Score=60.40 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=50.2
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCC
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGT 81 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~ 81 (333)
.-+|..++|.++|++|++.+..+.-...|++||.+.||+|+.||+.-.. ....-+||...+
T Consensus 400 ~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V~~g 460 (478)
T PRK15460 400 VQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPG-KIPLDLIEVRSG 460 (478)
T ss_pred cCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEEEcC
Confidence 3567788899999999999999999999999999999999999998633 344556665433
No 31
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.62 E-value=0.01 Score=52.95 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=42.0
Q ss_pred ceecCCCCEEEEEEeCeEEEEEec-c---eEEecCCeEEEECCccEEEeeCCCCCeEEEEEeec
Q 019943 20 AFCNADGDFLVVPQKGRLWIATEC-G---KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 79 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~-G---~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~ 79 (333)
=|--..++|+|+-++|...|.... | .+.+++||+.++|.++.|++.-. ..+.|+|||-.
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~-~~tiGLViEr~ 109 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRP-ADTIGLVIERK 109 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE--TT-EEEEEEE-
T ss_pred ccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCC-CCcEEEEEEec
Confidence 456678999999999998888643 4 49999999999999999999864 48999999975
No 32
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.38 E-value=0.012 Score=52.91 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=46.2
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCc--cEEEeeCCCCCeEEEEEee
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG--FRFAVSLPDGPSRGYIAEI 78 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG--~~~Rv~~~~~~~r~~iiE~ 78 (333)
.|+-+||+|+|++|++.+.+..|.-.|+|||.+=-|.| +-|...= .+..-+.++|.
T Consensus 60 ~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN-~s~~~~~yL~v 117 (161)
T COG3837 60 WHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLIN-RSDVILRYLEV 117 (161)
T ss_pred ccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEee-cCCceEEEEEe
Confidence 57889999999999999999999999999999999999 8887764 33333444443
No 33
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=96.35 E-value=0.011 Score=47.04 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEE
Q 019943 24 ADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 75 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~i 75 (333)
.++.|.+||++|++.- +.| .+.+||++..|.|..|++.. +..|.+||
T Consensus 42 H~g~ee~~VLeG~~~d--~~~--~~~~G~~~~~p~g~~h~~~s-~~gc~~~v 88 (91)
T PF12973_consen 42 HPGGEEILVLEGELSD--GDG--RYGAGDWLRLPPGSSHTPRS-DEGCLILV 88 (91)
T ss_dssp ESS-EEEEEEECEEEE--TTC--EEETTEEEEE-TTEEEEEEE-SSCEEEEE
T ss_pred CCCcEEEEEEEEEEEE--CCc--cCCCCeEEEeCCCCccccCc-CCCEEEEE
Confidence 5778888999999984 334 57999999999999999996 44687776
No 34
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.31 E-value=0.028 Score=48.13 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=55.0
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecce-EEecCCeEEEECCccEEEeeCCCCCeEEEEE
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 76 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~-l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ii 76 (333)
+-..+|.|+.. ++=.+=+.+|...+++|+..|.-|.|. +++++||.+|+|.|.+=.++..+.-.+.|++
T Consensus 45 ~~~GiWe~TpG---~~r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 45 VETGIWECTPG---KFRVTYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred eeEeEEEecCc---cceEEcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 34457777764 244566779999999999999999997 9999999999999998877765655567765
No 35
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.22 E-value=0.041 Score=52.46 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=58.4
Q ss_pred ceeEEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC-CCeEEEEEeecC
Q 019943 2 DMLFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD-GPSRGYIAEIFG 80 (333)
Q Consensus 2 ~~~~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~-~~~r~~iiE~~g 80 (333)
||.+++-......+++ +--+..-.+.+++++|++.+.-......|++||++.||.++.|...... ++.+.++-=..+
T Consensus 178 ~~~~~~~~~~PG~~~~--~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~n 255 (260)
T TIGR03214 178 DMNVHILSFEPGASHP--YIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKDMN 255 (260)
T ss_pred CcEEEEEEECCCcccC--CcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEcccc
Confidence 5667777777777775 1123334467799999999988888899999999999999999998753 356666654444
Q ss_pred Cc
Q 019943 81 TH 82 (333)
Q Consensus 81 ~~ 82 (333)
.+
T Consensus 256 r~ 257 (260)
T TIGR03214 256 RH 257 (260)
T ss_pred CC
Confidence 43
No 36
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=96.01 E-value=0.01 Score=52.63 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=39.5
Q ss_pred ceecCCCCEEEEEEeCeEEEEEe--cce-EEecCCeEEEECCccEEEe
Q 019943 20 AFCNADGDFLVVPQKGRLWIATE--CGK-LEVSPGEIAVLPQGFRFAV 64 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te--~G~-l~v~pGd~~VIPRG~~~Rv 64 (333)
.-||..+.|++.+++|+..|+.- .|. |+|+.||.++||.||-|+=
T Consensus 58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~r 105 (163)
T COG4297 58 HHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCR 105 (163)
T ss_pred ccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccc
Confidence 34788999999999999999984 454 9999999999999999964
No 37
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=95.57 E-value=0.046 Score=51.20 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=40.8
Q ss_pred cCCCCEEEEEEeCeEEEEEec--ce---EEecCCeEEEECCccEEEeeCCCCCeEEEEEeec
Q 019943 23 NADGDFLVVPQKGRLWIATEC--GK---LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 79 (333)
Q Consensus 23 n~DgDeL~~v~~G~l~l~te~--G~---l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~ 79 (333)
|+|++|++++++|++++.-+. |. +.+++||.+.||+|--|++.= .|+.-+.+++.+
T Consensus 100 ~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N-~Gd~pLvf~~v~ 160 (209)
T COG2140 100 NADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTIN-TGDEPLVFLNVY 160 (209)
T ss_pred CCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeec-CCCCCEEEEEEE
Confidence 455555999999988876554 43 779999999999999999874 333334444444
No 38
>PRK11171 hypothetical protein; Provisional
Probab=95.48 E-value=0.11 Score=49.73 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=52.7
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCC-CCCeEEEEEeecCCce
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEIFGTHF 83 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~-~~~~r~~iiE~~g~~~ 83 (333)
.+....|.++|++|++.+..+.....|++||.+.+|.++.|+..-+ +.++|.++.-..+.+.
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~nr~~ 263 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVNRHP 263 (266)
T ss_pred cCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcccccCc
Confidence 3677779999999999999988889999999999999999999854 4578888887765543
No 39
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=95.21 E-value=0.24 Score=40.14 Aligned_cols=70 Identities=10% Similarity=0.148 Sum_probs=47.1
Q ss_pred EEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC-CCCCeEEEEE
Q 019943 7 CNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL-PDGPSRGYIA 76 (333)
Q Consensus 7 i~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~-~~~~~r~~ii 76 (333)
..+-..-..+.++.-...+--..|+|++|.+.+....-...+.+|+...||||-.|.+.= .+.+++++.+
T Consensus 14 ~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 14 SGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp EEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred eEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 333334344444344445556778999999999999999999999999999999999963 3568887754
No 40
>PF12852 Cupin_6: Cupin
Probab=95.04 E-value=0.04 Score=48.86 Aligned_cols=41 Identities=27% Similarity=0.574 Sum_probs=36.0
Q ss_pred CCEEEEEEeCeEEEEEec-c-eEEecCCeEEEECCccEEEeeC
Q 019943 26 GDFLVVPQKGRLWIATEC-G-KLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 26 gDeL~~v~~G~l~l~te~-G-~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
+=-+++|.+|+..|+.+. + .+.+++||++++|+|..|++.-
T Consensus 35 ~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred ceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence 456789999999999776 3 5999999999999999999964
No 41
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=95.04 E-value=0.074 Score=49.45 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=50.6
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCC-eEEEEEeecCCce
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGP-SRGYIAEIFGTHF 83 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~-~r~~iiE~~g~~~ 83 (333)
+++--+..+..++. -...|.|+.+|++|++. ++.-.+++||++.+|.|..|++...+++ |..|.+=. +++
T Consensus 129 v~Ll~i~pG~~~p~---H~H~G~E~tlVLeG~f~----de~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d--apl 199 (215)
T TIGR02451 129 VRLLYIEAGQSIPQ---HTHKGFELTLVLHGAFS----DETGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD--APL 199 (215)
T ss_pred EEEEEECCCCccCC---CcCCCcEEEEEEEEEEE----cCCCccCCCeEEECCCCCCcCcccCCCCCeEEEEEec--CCc
Confidence 34444555566653 33488899999999953 4445799999999999999999886543 66665543 444
Q ss_pred ec
Q 019943 84 QL 85 (333)
Q Consensus 84 ~l 85 (333)
++
T Consensus 200 ~f 201 (215)
T TIGR02451 200 RF 201 (215)
T ss_pred cc
Confidence 44
No 42
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.94 E-value=0.23 Score=43.33 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=57.6
Q ss_pred EEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEec---ceEEecCCeEEEECCccEEEee-CCCCCeEEEEEeec----
Q 019943 8 NRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATEC---GKLEVSPGEIAVLPQGFRFAVS-LPDGPSRGYIAEIF---- 79 (333)
Q Consensus 8 ~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~---G~l~v~pGd~~VIPRG~~~Rv~-~~~~~~r~~iiE~~---- 79 (333)
|+-+....-..++--|..-+-.|++++|+.+...-. -..+++|||++.||.|+-|.+. +.+.++..+|.-+.
T Consensus 49 ~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRsDp~~~ 128 (142)
T COG4101 49 HLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIARSDPNPQ 128 (142)
T ss_pred EEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEccCCCCC
Confidence 333333333345667888889999999998766533 2488999999999999999875 34446666665432
Q ss_pred CCceecCCCCCC
Q 019943 80 GTHFQLPDLGPI 91 (333)
Q Consensus 80 g~~~~lPe~Gpi 91 (333)
.+..-||++.+|
T Consensus 129 Esv~~lpelD~l 140 (142)
T COG4101 129 ESVQLLPELDPL 140 (142)
T ss_pred cCcEEecccccc
Confidence 134667777665
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=94.73 E-value=0.077 Score=49.46 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=39.2
Q ss_pred CCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC
Q 019943 26 GDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 26 gDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
.-+++++.+|++.+..+.....+++||+++||.|+.|++....
T Consensus 44 ~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 44 YYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred ceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCC
Confidence 4699999999999999999999999999999999999987633
No 44
>PRK13502 transcriptional activator RhaR; Provisional
Probab=94.71 E-value=0.083 Score=49.31 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=40.5
Q ss_pred CCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC
Q 019943 24 ADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
.|.=|++++.+|++.++.+.....++|||+++||.|..|++...+
T Consensus 36 h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 36 HEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred cceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccC
Confidence 356699999999999999999999999999999999999987533
No 45
>PRK13500 transcriptional activator RhaR; Provisional
Probab=94.45 E-value=0.11 Score=49.93 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=41.0
Q ss_pred cCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC
Q 019943 23 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 23 n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
..|.-||+++.+|++.+..+.....+.+||+++||.|..|....
T Consensus 65 ~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 65 THDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred ccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccc
Confidence 45678999999999999999999999999999999999999875
No 46
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=94.23 E-value=0.13 Score=47.13 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=37.5
Q ss_pred CCCCEEEEEEeCeEEEEEe--cce---EEecCCeEEEECCccEEEeeCCCC
Q 019943 24 ADGDFLVVPQKGRLWIATE--CGK---LEVSPGEIAVLPQGFRFAVSLPDG 69 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~te--~G~---l~v~pGd~~VIPRG~~~Rv~~~~~ 69 (333)
...||+-|++.|++.+... +|+ |++.+||++.||.||+|+..+++.
T Consensus 93 H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~ 143 (181)
T COG1791 93 HTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES 143 (181)
T ss_pred cCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence 4567888888988876654 444 899999999999999999998654
No 47
>PRK13501 transcriptional activator RhaR; Provisional
Probab=94.10 E-value=0.2 Score=47.18 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=41.8
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCC
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP 67 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~ 67 (333)
...|.=|++++.+|++.+..+.....+.+||+++||.|..|.+...
T Consensus 34 H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~~ 79 (290)
T PRK13501 34 HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESV 79 (290)
T ss_pred ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCccccccc
Confidence 3447889999999999999999999999999999999999998753
No 48
>PRK13503 transcriptional activator RhaS; Provisional
Probab=93.70 E-value=0.11 Score=48.15 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=42.5
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
...+.-|++++.+|++++..+.....+++||+++||.|..|.....+
T Consensus 31 H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 31 HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhcc
Confidence 45688899999999999999999999999999999999999876543
No 49
>PLN00212 glutelin; Provisional
Probab=93.63 E-value=0.26 Score=51.51 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=37.0
Q ss_pred cCCCCCCCCCCCCCCccceeEEeeccccccc----------CCcCCCeeeeecCCCCC
Q 019943 198 VAEHTFRPPYYHRNCMSEFMGLIRGGYEAKA----------DGFLPGGASLHSCMTPH 245 (333)
Q Consensus 198 ~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~----------~g~~pG~~SlHp~g~pH 245 (333)
-.++++-+|.+|.| ..|+++.++|.-..-- +.+.+|-+-.-|++.+|
T Consensus 355 L~~gam~~PHwn~n-A~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v 411 (493)
T PLN00212 355 LYQNALLSPFWNVN-AHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAV 411 (493)
T ss_pred EcCCcccCCeecCC-CCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeE
Confidence 36899999999999 6799999998643210 13788999999999988
No 50
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.12 E-value=0.1 Score=47.42 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=45.2
Q ss_pred CCCCEEEEEEeCeEEEEEec--c---eEEecCCeEEEECCccEEEeeCCCC----CeEEEEEeecCCcee
Q 019943 24 ADGDFLVVPQKGRLWIATEC--G---KLEVSPGEIAVLPQGFRFAVSLPDG----PSRGYIAEIFGTHFQ 84 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~te~--G---~l~v~pGd~~VIPRG~~~Rv~~~~~----~~r~~iiE~~g~~~~ 84 (333)
...+|+-++++|++-..-+. + .+-|+.||.+|||.|+-||...+.. ..|+++=|+....+-
T Consensus 91 h~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~wta~n 160 (179)
T KOG2107|consen 91 HEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPKWTAYN 160 (179)
T ss_pred CchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCcccccCC
Confidence 34567779999998766554 4 3789999999999999999987543 346666666655443
No 51
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=93.07 E-value=0.19 Score=48.37 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=41.4
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
.-.+.=|++++.+|++.+........++|||+++|+.|+.|+....+
T Consensus 42 HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~ 88 (302)
T PRK10371 42 HWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPG 88 (302)
T ss_pred CccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccC
Confidence 44566688899999999999999999999999999999999987633
No 52
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=92.89 E-value=0.74 Score=39.63 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=40.3
Q ss_pred EEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecce----EEe-cCCeEEEECCccEEEeeCCCCCeEEEEE
Q 019943 9 RYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK----LEV-SPGEIAVLPQGFRFAVSLPDGPSRGYIA 76 (333)
Q Consensus 9 ~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~----l~v-~pGd~~VIPRG~~~Rv~~~~~~~r~~ii 76 (333)
+|..+....+..-+|....+++++.+|+.+|....|. +.+ ++...+.||.|+-|.+.-.+..+-++++
T Consensus 37 i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~ 109 (131)
T PF05523_consen 37 IYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVL 109 (131)
T ss_dssp EES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEE
T ss_pred EEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEE
Confidence 4445555556677899999999999999999998864 333 4446999999999999644445555554
No 53
>PLN00212 glutelin; Provisional
Probab=92.48 E-value=1.1 Score=47.02 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=50.8
Q ss_pred eeEEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEec--ce--E--EecCCeEEEECCccEEEeeCCCCCeEEEEE
Q 019943 3 MLFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATEC--GK--L--EVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 76 (333)
Q Consensus 3 ~~~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~--G~--l--~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ii 76 (333)
|..+.-....|.-|. =.+|..+.++++|.+|+++++... |. + +|++||++|||+|..|-..+.+..-....+
T Consensus 348 LSa~rv~L~~gam~~--PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~egfe~v~F 425 (493)
T PLN00212 348 MSATRVNLYQNALLS--PFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAF 425 (493)
T ss_pred eeEEEEEEcCCcccC--CeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCceEEEEe
Confidence 333333444444442 458889999999999999999864 22 2 699999999999999977664333344444
Q ss_pred ee
Q 019943 77 EI 78 (333)
Q Consensus 77 E~ 78 (333)
.+
T Consensus 426 ~t 427 (493)
T PLN00212 426 KT 427 (493)
T ss_pred ec
Confidence 43
No 54
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=92.46 E-value=0.54 Score=44.79 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCC-CCCeEEEEEeec
Q 019943 18 NCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP-DGPSRGYIAEIF 79 (333)
Q Consensus 18 ~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~-~~~~r~~iiE~~ 79 (333)
++-+.+...+-..||.+|++.+..+..+-.+++|+|+.+|.|..|++.-. ...+|+..++..
T Consensus 75 ~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~ 137 (264)
T COG3257 75 QRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR 137 (264)
T ss_pred CCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence 34556666677889999999999999999999999999999999999743 337899998853
No 55
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=92.06 E-value=0.63 Score=41.97 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=34.9
Q ss_pred CCCCEEEEEEeCeEEEEEecc---------eEEecCCeEEEECCccEEEeeCCC--CCeEEEEEeec
Q 019943 24 ADGDFLVVPQKGRLWIATECG---------KLEVSPGEIAVLPQGFRFAVSLPD--GPSRGYIAEIF 79 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~te~G---------~l~v~pGd~~VIPRG~~~Rv~~~~--~~~r~~iiE~~ 79 (333)
...+|+|+|++|++.+....- .+.+.|++.+.||-+..|++--++ ++.+++++=+.
T Consensus 62 HsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr 128 (167)
T PF02041_consen 62 HSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR 128 (167)
T ss_dssp ESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEES
T ss_pred ccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecC
Confidence 457899999999999987632 278899999999999999986544 35677777654
No 56
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=92.01 E-value=0.88 Score=44.08 Aligned_cols=66 Identities=15% Similarity=0.335 Sum_probs=49.5
Q ss_pred eEEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCcc-EEEeeCCCCCeEEEE
Q 019943 4 LFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGF-RFAVSLPDGPSRGYI 75 (333)
Q Consensus 4 ~~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~-~~Rv~~~~~~~r~~i 75 (333)
.|++..+..+... .+.+.++=.++++.+|+++|....+.+.+++||.++||.+. .+.++ +..+.++
T Consensus 234 ~F~~~~~~~~~~~---~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~~~i~---g~~~~~~ 300 (302)
T TIGR00218 234 YFSVYKWDISGKA---EFIQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGPFTIE---GECEAIV 300 (302)
T ss_pred CeEEEEEEeCCce---eeccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEccCCccEEEE---eeEEEEE
Confidence 4677777776643 23345567788999999999988888999999999999998 46664 3444443
No 57
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.36 E-value=1.1 Score=37.68 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=40.7
Q ss_pred EEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeec
Q 019943 29 LVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 79 (333)
Q Consensus 29 L~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~ 79 (333)
+.++.+|+..++.....+.++|||+++++-+..|++... +..+.+++-..
T Consensus 58 l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~-~~~~~~~l~ip 107 (172)
T PF14525_consen 58 LVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFS-AGCRQLSLRIP 107 (172)
T ss_pred EEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEEC-CCccEEEEEEC
Confidence 447888999999888899999999999999999999874 35566555444
No 58
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=90.73 E-value=0.5 Score=44.37 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC
Q 019943 25 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 25 DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
++-++.++.+|++.+.+..+...+++||+++||.|+.|+...
T Consensus 48 ~~~~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 48 KGYILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred cceEEEEEEeccEEEecCCeeEecCCCCEEEECCCCceeecc
Confidence 345777899999999999999999999999999999998764
No 59
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=90.62 E-value=0.79 Score=43.12 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCC
Q 019943 28 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 28 eL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
.++++.+|++.++.+.....+.|||+++||.+..|++...+
T Consensus 73 ~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 73 FTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred EEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCC
Confidence 35578999999999999999999999999999999987643
No 60
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=90.28 E-value=1.4 Score=40.58 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCCCEEEEEEeCeEEEEE--ecc-------eEEecCCeEEEECCccEEEeeCCC
Q 019943 24 ADGDFLVVPQKGRLWIAT--ECG-------KLEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~t--e~G-------~l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
-+--|++.+++|++.+.. +.| .+.+++||.++||.|.-||..=++
T Consensus 81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g 134 (182)
T PF06560_consen 81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTG 134 (182)
T ss_dssp TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-S
T ss_pred CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECC
Confidence 458899999999887765 446 378999999999999999886433
No 61
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=89.94 E-value=1.2 Score=44.53 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=43.4
Q ss_pred ecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEE
Q 019943 22 CNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIA 76 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ii 76 (333)
.++-.-.+|+|++|++..+...++++.++||+++||.-..++.... +++.+|.+
T Consensus 266 ~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f~vPsW~~~~h~a~-~da~Lf~~ 319 (335)
T TIGR02272 266 YRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVFVVPSWHPVRFEAS-DDAVLFSF 319 (335)
T ss_pred ccccccEEEEEEeCeEEEEECCEEEEecCCCEEEECCCCcEecccC-CCeEEEEe
Confidence 3445678999999999999999999999999999999988777653 34444433
No 62
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=89.10 E-value=1.3 Score=42.72 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=41.6
Q ss_pred cCCCCEEEEEEeCeEEEEEec-ceEEecCC--------eEEEECCccEEEeeCCCCCeEEEEEeec
Q 019943 23 NADGDFLVVPQKGRLWIATEC-GKLEVSPG--------EIAVLPQGFRFAVSLPDGPSRGYIAEIF 79 (333)
Q Consensus 23 n~DgDeL~~v~~G~l~l~te~-G~l~v~pG--------d~~VIPRG~~~Rv~~~~~~~r~~iiE~~ 79 (333)
-.+-+..+++++|.++++.+. ..-.+... |.+.||+|+++++.. ...++++|+-+.
T Consensus 44 ~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a-~~~ae~~~~sap 108 (261)
T PF04962_consen 44 LERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFA-STDAEFAVCSAP 108 (261)
T ss_dssp CCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEE-SSTEEEEEEEEE
T ss_pred CCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEE-cCCCEEEEEccc
Confidence 344556678999999999965 45666666 999999999999998 446999999876
No 63
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=88.79 E-value=2.8 Score=33.78 Aligned_cols=48 Identities=13% Similarity=-0.035 Sum_probs=37.6
Q ss_pred EEEEEEeCeEEEEEecc-------eEEecCCeEEEECCccEEEeeCCCCCeEEEE
Q 019943 28 FLVVPQKGRLWIATECG-------KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 75 (333)
Q Consensus 28 eL~~v~~G~l~l~te~G-------~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~i 75 (333)
-.+-|++|+|++..-.+ .+...+|+..+|+-..-|||++.+..++++|
T Consensus 27 g~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~l 81 (82)
T PF09313_consen 27 GKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQL 81 (82)
T ss_dssp EEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEEE
T ss_pred EEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEEe
Confidence 35789999999998664 3789999999999999999998776677665
No 64
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=88.74 E-value=1.8 Score=42.24 Aligned_cols=65 Identities=11% Similarity=0.208 Sum_probs=50.0
Q ss_pred eecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccE-EEeeCC--CCCeEEEEEeecCCceecC
Q 019943 21 FCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFR-FAVSLP--DGPSRGYIAEIFGTHFQLP 86 (333)
Q Consensus 21 ~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~-~Rv~~~--~~~~r~~iiE~~g~~~~lP 86 (333)
|.-.+-+-.++++.|.++++.+.-...+++.|.+.||+|.+ ..+... ..++++||+-+. +|=.+|
T Consensus 69 ~fl~rrE~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP-A~~~~P 136 (276)
T PRK00924 69 YFLERRELGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP-AHTTYP 136 (276)
T ss_pred eecCCcEEEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc-cCCCCC
Confidence 44455556789999999999888788899999999999987 555432 347899999987 344444
No 65
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.49 E-value=1.7 Score=44.14 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=46.2
Q ss_pred CceecCCCCEEEEEEeCeEEEEEe-cceEEecCCeEEEECCccEEEeeCCCCC
Q 019943 19 CAFCNADGDFLVVPQKGRLWIATE-CGKLEVSPGEIAVLPQGFRFAVSLPDGP 70 (333)
Q Consensus 19 ~~~~n~DgDeL~~v~~G~l~l~te-~G~l~v~pGd~~VIPRG~~~Rv~~~~~~ 70 (333)
..|.-.||--+++|.+|++.|+|+ .+.+.+++||++.||....-++...+++
T Consensus 346 ~~~~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~ 398 (411)
T KOG2757|consen 346 YKFPGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDP 398 (411)
T ss_pred EEeecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence 377888999999999999999999 8899999999999999888888775544
No 66
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=85.24 E-value=4.9 Score=40.84 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=43.5
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccE-EEe
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFR-FAV 64 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~-~Rv 64 (333)
|++..+..... ......++=.++++.+|+++|....+.+.+++|+.++||.+.. ..+
T Consensus 321 F~~~~~~l~~~---~~~~~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQ---PTTLSQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCc---eEEecCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE
Confidence 56666665442 2334456778999999999999877789999999999999775 444
No 67
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=84.96 E-value=4 Score=40.55 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=50.0
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCc-cEEEeeC
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG-FRFAVSL 66 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG-~~~Rv~~ 66 (333)
|++..+..+. ...+.+.++=.++++.+|++.|.-....+.+++|+-++||.. -.++++-
T Consensus 242 F~l~~~~i~~---~~~~~~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 242 FALYKWDISG---TAEFIKQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred eEEEEEeccC---hhhhccCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence 6777777776 235667779999999999999999999999999999999998 6777764
No 68
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=84.78 E-value=2.8 Score=34.35 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=43.3
Q ss_pred cCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCceec
Q 019943 23 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQL 85 (333)
Q Consensus 23 n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~l 85 (333)
.++..-++++.+|++.+.-+. ..+.+|+.+++-.|...++...+..+|++|+-- .++.=
T Consensus 17 ~~~~~~~iyv~~G~~~v~~~~--~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~G--ePl~E 75 (104)
T PF05726_consen 17 PPGHNAFIYVLEGSVEVGGEE--DPLEAGQLVVLEDGDEIELTAGEEGARFLLLGG--EPLNE 75 (104)
T ss_dssp ETT-EEEEEEEESEEEETTTT--EEEETTEEEEE-SECEEEEEESSSSEEEEEEEE------S
T ss_pred CCCCEEEEEEEECcEEECCCc--ceECCCcEEEECCCceEEEEECCCCcEEEEEEc--cCCCC
Confidence 455667889999998774433 689999999999999999998657899999974 34543
No 69
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=84.32 E-value=2 Score=41.82 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=37.0
Q ss_pred EEEEEEeCeEEEEEecce-EEecCCeEEEECCccEEEeeCC
Q 019943 28 FLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLP 67 (333)
Q Consensus 28 eL~~v~~G~l~l~te~G~-l~v~pGd~~VIPRG~~~Rv~~~ 67 (333)
-|+.+.+|.+.|.++.|. |.+.++.++++||+..|++...
T Consensus 40 ~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~~ 80 (291)
T PRK15186 40 VLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITME 80 (291)
T ss_pred EEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEec
Confidence 588999999999999987 9999999999999999998764
No 70
>PLN02288 mannose-6-phosphate isomerase
Probab=83.01 E-value=3.4 Score=42.18 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=44.0
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecce--EEecCCeEEEECCccEE
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK--LEVSPGEIAVLPQGFRF 62 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~--l~v~pGd~~VIPRG~~~ 62 (333)
|++..+..+.... ..+...+|-.++++.+|+++|....+. +.+++|+.++||.+.+-
T Consensus 334 F~v~~~~l~~~~~-~~~~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~ 392 (394)
T PLN02288 334 FEVDHCDVPPGAS-VVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEI 392 (394)
T ss_pred eEEEEEEeCCCCe-EeecCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcc
Confidence 5666666655432 234447888999999999999887777 77999999999987653
No 71
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=82.91 E-value=9.6 Score=36.33 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=44.2
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecC
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 80 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g 80 (333)
|.|.+|..+..=. .+. .-.+-++..|.-+--.-.+.|+|.|||-+.|+.|+-|+.....|. ++|=|+..
T Consensus 120 L~i~l~~s~~~~~----~~~-~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~yH~Fw~e~g~--vLigEVSt 188 (225)
T PF07385_consen 120 LVIELYNSDPDGE----LDA-DTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIYHWFWGEGGD--VLIGEVST 188 (225)
T ss_dssp EEEEEEEB--TTS----SB--SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEEEEEEE-TTS--EEEEEEEE
T ss_pred EEEEEEeccCCCc----ccc-CCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCeeeEEecCCC--EEEEeeec
Confidence 5677787765211 011 234567778988888889999999999999999999999874433 88888863
No 72
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=82.83 E-value=12 Score=32.61 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=55.8
Q ss_pred EEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC----CCCCeEEEEEeec
Q 019943 6 TCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL----PDGPSRGYIAEIF 79 (333)
Q Consensus 6 ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~----~~~~~r~~iiE~~ 79 (333)
++++|+.++..... .--..--+.+|.||+=++....-..++.+|+++|.+-.+--..+. ++.+..++.++..
T Consensus 5 gl~i~r~~~~~~~~--~~~y~p~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld 80 (155)
T PF06719_consen 5 GLSIFRSSRPTPPM--PCVYEPSICIVLQGSKRVHLGDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELD 80 (155)
T ss_pred CEEEEEECCCCCCc--ceecCCeEEEEEeeeEEEEECCceEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcC
Confidence 47889999887532 223445688999999999999999999999999999887665443 3457788888765
No 73
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=80.21 E-value=3.3 Score=38.09 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCCCCCCCccceeEEeeccccccc--C------CcCCCeeeeecCCCCCCCChhHHHHHHhcCCCCCCceeecceEEEE
Q 019943 204 RPPYYHRNCMSEFMGLIRGGYEAKA--D------GFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMF 275 (333)
Q Consensus 204 rpPyyHrN~dsE~m~~i~G~y~a~~--~------g~~pG~~SlHp~g~pHGP~~~~~e~a~~~~~~~~P~~~~~~lAfM~ 275 (333)
|-. ||.|-..|+.+.+.|+..-+- + -+.+|-+-|.|.+++|-|.+ ..++..++|
T Consensus 46 r~d-~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r-----------------~~~tv~Lvi 107 (177)
T PRK13264 46 RTD-FHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQR-----------------EAGSIGLVI 107 (177)
T ss_pred ccc-cccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCcc-----------------CCCeEEEEE
Confidence 444 688776687777899842111 1 38999999999999999972 136677777
Q ss_pred eeccCccc
Q 019943 276 ESCLIPRI 283 (333)
Q Consensus 276 eT~~~l~~ 283 (333)
|-.++..-
T Consensus 108 E~~r~~~~ 115 (177)
T PRK13264 108 ERKRPEGE 115 (177)
T ss_pred EeCCCCCC
Confidence 77776643
No 74
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=78.72 E-value=4.2 Score=36.77 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCccceeEEeecccccc--------cCCcCCCeeeeecCCCCCCCChhHHHHHHhcCCCCCCceeecceEE
Q 019943 202 TFRPPYYHRNCMSEFMGLIRGGYEAK--------ADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAF 273 (333)
Q Consensus 202 t~rpPyyHrN~dsE~m~~i~G~y~a~--------~~g~~pG~~SlHp~g~pHGP~~~~~e~a~~~~~~~~P~~~~~~lAf 273 (333)
--|.. ||.|-..|+.+.+.|+-.=+ .--+.+|-+-|.|.+++|-|.+ ..++...
T Consensus 38 n~R~d-~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r-----------------~~~t~~L 99 (159)
T TIGR03037 38 NARTD-FHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQR-----------------PAGSIGL 99 (159)
T ss_pred CCCcc-cccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccccc-----------------CCCcEEE
Confidence 34555 68887557777788874321 1137899999999999999972 2467788
Q ss_pred EEeeccCccc
Q 019943 274 MFESCLIPRI 283 (333)
Q Consensus 274 M~eT~~~l~~ 283 (333)
+||-.++..-
T Consensus 100 vIE~~r~~~~ 109 (159)
T TIGR03037 100 VIERKRPQGE 109 (159)
T ss_pred EEEeCCCCCC
Confidence 8887777643
No 75
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=78.69 E-value=5.2 Score=37.59 Aligned_cols=69 Identities=29% Similarity=0.410 Sum_probs=50.6
Q ss_pred EEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCceecCC---CCCCCCCCCCC
Q 019943 28 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPD---LGPIGANGLAA 98 (333)
Q Consensus 28 eL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~lPe---~GpiG~ngla~ 98 (333)
.+-++.+|...=.|-.+.|++.||+-+.+|.|+.|..-..++- +++=|.....=.+=| +-|+|.-..++
T Consensus 137 ~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~~HsFwae~g~--vlvgEvSsvndD~hDn~F~~Pl~rfs~i~ 208 (225)
T COG3822 137 DVTVPVDGCRQTHTAGSQLKLSPGESITLPPGLYHSFWAEEGG--VLVGEVSSVNDDLHDNIFLDPLGRFSLID 208 (225)
T ss_pred CeEecCCCcEEEeccceeEEECCCCcEecCCCceeeeeecCCc--EEEEEEeeccCccccchhhcchhhhcccc
Confidence 4678889998888999999999999999999999999764333 778887643333333 44555544443
No 76
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=77.47 E-value=5.3 Score=38.14 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=48.1
Q ss_pred CCceecCCCCEEEEEEeCeEEEEE-ecc---eEEecCCeEEEECCccEEEeeCCCCCeEEEEEeec
Q 019943 18 NCAFCNADGDFLVVPQKGRLWIAT-ECG---KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIF 79 (333)
Q Consensus 18 ~~~~~n~DgDeL~~v~~G~l~l~t-e~G---~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~ 79 (333)
++-|.-..|.|+||-.+|...|+- |.| .|.+++||+..+|..+.|++.--. .+-|+++|-.
T Consensus 45 RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa-ntvGlVVEr~ 109 (279)
T KOG3995|consen 45 RKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA-NTVGLVVERR 109 (279)
T ss_pred ccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc-cceeEEEEec
Confidence 445666788999999999888875 334 588999999999999999886322 5778999865
No 77
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=74.50 E-value=4.5 Score=39.54 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=37.0
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEE-eCeEEEE--E------------e---------cceEEecCCeEEEECCcc
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQ-KGRLWIA--T------------E---------CGKLEVSPGEIAVLPQGF 60 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~-~G~l~l~--t------------e---------~G~l~v~pGd~~VIPRG~ 60 (333)
..+++|.....- +.+=-|-|.-.+|++| +|+=+-+ . . .-.+.++|||++.||||+
T Consensus 114 ~~~n~Y~tp~g~-~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGS-QGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSB-EESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCC-CCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 567888877753 2344566666666654 4433222 1 0 114889999999999999
Q ss_pred EEEeeCCC
Q 019943 61 RFAVSLPD 68 (333)
Q Consensus 61 ~~Rv~~~~ 68 (333)
-|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99998754
No 78
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=72.71 E-value=21 Score=29.80 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=42.8
Q ss_pred ceecCCCCEEEEEEeCeEEEEEecc--eEEecCCeEEEECCccEEEeeCCCCCeEEEEEe
Q 019943 20 AFCNADGDFLVVPQKGRLWIATECG--KLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAE 77 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~G--~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE 77 (333)
+-.+-..-|+.-|..|++.++...- -.++++||-..||.+..|++... +.--|+|+
T Consensus 35 Y~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 35 YTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred EEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 5556777899999999999999753 48899999999999999999874 46677775
No 79
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=68.02 E-value=5.7 Score=31.69 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=16.7
Q ss_pred eEEecCCeEEEECCccEEEeeC
Q 019943 45 KLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 45 ~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
++.-+|||+|+||.|+-|.+.-
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n 103 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFN 103 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEE
T ss_pred cceECCCCEEEECCCceEEEEe
Confidence 5788999999999999999864
No 80
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=68.01 E-value=19 Score=33.20 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=58.8
Q ss_pred cCCCCcceEEeec-CCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCcc-ceeEEeeccccc---cc------CCcCCC
Q 019943 166 HGDPSINTVLTAP-TDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMS-EFMGLIRGGYEA---KA------DGFLPG 234 (333)
Q Consensus 166 H~dPsi~tvlta~-s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~ds-E~m~~i~G~y~a---~~------~g~~pG 234 (333)
|.|+.+|.|.... +...|-...+.++.+|.-...|-...++=||.|.+. |+.+.+.|.-.- .. ..+.||
T Consensus 48 ~~d~~~Y~v~~~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pG 127 (191)
T PRK04190 48 TEDTVVYEVYAIEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPG 127 (191)
T ss_pred cCCceEEEEEEecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCC
Confidence 4567778776544 344566677777788887666777788889999874 999999987321 11 137899
Q ss_pred eeeeecCCCCCC
Q 019943 235 GASLHSCMTPHG 246 (333)
Q Consensus 235 ~~SlHp~g~pHG 246 (333)
.+-+=|.+..|.
T Consensus 128 d~v~IPpg~~H~ 139 (191)
T PRK04190 128 TVVYVPPYWAHR 139 (191)
T ss_pred CEEEECCCCcEE
Confidence 999999999993
No 81
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=66.54 E-value=17 Score=36.53 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=36.2
Q ss_pred ceecCCCCEEEEEEeCeEEEEE-ecceEEecCCeEEEECCccEEEeeCC
Q 019943 20 AFCNADGDFLVVPQKGRLWIAT-ECGKLEVSPGEIAVLPQGFRFAVSLP 67 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~t-e~G~l~v~pGd~~VIPRG~~~Rv~~~ 67 (333)
.-||... -+.+|.+|++.-.+ +.-++..++||++++|.+.-|.-.-.
T Consensus 96 ~HRht~s-Al~~vveG~G~~t~V~g~~~~~~~gD~~~tP~w~wH~H~n~ 143 (335)
T TIGR02272 96 SHRHTQS-ALRFIVEGKGAFTAVDGERTTMHPGDFIITPSWTWHDHGNP 143 (335)
T ss_pred ccccccc-eEEEEEEcCceEEEECCEEEeeeCCCEEEeCCCeeEecccC
Confidence 4466555 77888899996444 44569999999999999999986543
No 82
>PRK15185 transcriptional regulator HilD; Provisional
Probab=66.17 E-value=11 Score=37.55 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=36.5
Q ss_pred EEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeC
Q 019943 28 FLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 28 eL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
-|+.+..|.++|+++.|.+.+-++.+++++|+...-+..
T Consensus 51 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~k~~~i~~~~ 89 (309)
T PRK15185 51 TLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTL 89 (309)
T ss_pred EEEEEccceEEEEcCCceEEeCCCceEEEeCCcEEEEEh
Confidence 578899999999999999999999999999999988865
No 83
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=64.13 E-value=41 Score=26.00 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=39.3
Q ss_pred CEEEEEEeCeEEEEEecce---EEecCCeEEEECCccEEEee--CCCCCeEEEEEe
Q 019943 27 DFLVVPQKGRLWIATECGK---LEVSPGEIAVLPQGFRFAVS--LPDGPSRGYIAE 77 (333)
Q Consensus 27 DeL~~v~~G~l~l~te~G~---l~v~pGd~~VIPRG~~~Rv~--~~~~~~r~~iiE 77 (333)
..-+.+.+|++.+...-+. +.|+-+...+..||++|++. ..++.+++-++|
T Consensus 39 ~~~~~L~~G~~~~~~~~~~~~~~~V~T~~~~i~v~GT~f~v~v~~~~~~~~v~v~~ 94 (98)
T PF04773_consen 39 PTRLRLLSGEILFDVSPGKKRPFEVRTPTATIGVRGTRFSVRVDAEDGSTRVAVLE 94 (98)
T ss_pred ceEEEEcCCCEEEEEcccCCCCEEEEeCCEEEEEecCEEEEEEECCCCcEEEEEEe
Confidence 3357889999999886532 89999999999999999554 455667777766
No 84
>PRK10579 hypothetical protein; Provisional
Probab=63.67 E-value=41 Score=28.05 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=46.7
Q ss_pred ceecCCCCEEEEEEeCeEEEEEec--ceEEecCCeEEEECCccEEEeeCCCCCeEEEEEe
Q 019943 20 AFCNADGDFLVVPQKGRLWIATEC--GKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAE 77 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~--G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE 77 (333)
+-.+-+.-|+.-|+.|+++++... .-..++.||-..||.+-+|++... +..-|+|+
T Consensus 35 y~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 35 YTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred EEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 445667789999999999999876 448999999999999999999874 35677775
No 85
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=59.48 E-value=37 Score=32.86 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=34.1
Q ss_pred CCCEEEEEEeCeEEEEEecce---EEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCceec
Q 019943 25 DGDFLVVPQKGRLWIATECGK---LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQL 85 (333)
Q Consensus 25 DgDeL~~v~~G~l~l~te~G~---l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~l 85 (333)
..|+-++|++|.+.+ ..++ +.+.+|.|..+|+|..| +...+++.-+..+|.-.++|..
T Consensus 55 ~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~~h-~~~~~~~~~~~~~e~g~gp~~v 115 (251)
T PF14499_consen 55 NADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGEPH-ITAAEGETNLLFIEIGEGPYDV 115 (251)
T ss_dssp SS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT-EE-EETTS-EE-EEEEE-S---EE-
T ss_pred eeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCCce-eeeccCccEEEEEEeCCCcccc
Confidence 457888999998766 3443 55999999999999555 5555666667788887677763
No 86
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=59.12 E-value=10 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=17.9
Q ss_pred eEEecCCeEEEECCccEEEeeCC
Q 019943 45 KLEVSPGEIAVLPQGFRFAVSLP 67 (333)
Q Consensus 45 ~l~v~pGd~~VIPRG~~~Rv~~~ 67 (333)
...|+|||.+.||+|-=|+|+..
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEES
T ss_pred EEEECCCeEEEECCCCeEEEEEc
Confidence 37899999999999999999875
No 87
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.71 E-value=16 Score=36.69 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=32.6
Q ss_pred EEEEEEeCeEEEEEecce-EEecCCeEEEECCccEEE
Q 019943 28 FLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFA 63 (333)
Q Consensus 28 eL~~v~~G~l~l~te~G~-l~v~pGd~~VIPRG~~~R 63 (333)
-|-||++|.+...+.+|. +..++||+++.|.++-|-
T Consensus 114 AlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHd 150 (351)
T COG3435 114 ALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHD 150 (351)
T ss_pred ceEEEEeccceeEeecCceeeccCCCEEEccCceecc
Confidence 477999999999999986 899999999999999874
No 88
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=51.52 E-value=14 Score=36.72 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=26.6
Q ss_pred cceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecC
Q 019943 43 CGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 80 (333)
Q Consensus 43 ~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g 80 (333)
+-.+.|+|||.++||.|+-|-.. +|+++|.-.
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~------~G~~lEvmq 188 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYL------KGLVLEVMQ 188 (312)
T ss_pred hcEEecCCCCEEEecCCCceeec------cceEEEEEe
Confidence 45689999999999999999874 468888764
No 89
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=46.13 E-value=25 Score=24.97 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.1
Q ss_pred EeCeEEEEEecc-eEEecCCeEEE
Q 019943 33 QKGRLWIATECG-KLEVSPGEIAV 55 (333)
Q Consensus 33 ~~G~l~l~te~G-~l~v~pGd~~V 55 (333)
.+|.|.|+++.| ...+..||+.+
T Consensus 24 ~~G~L~v~~~~g~~~~i~sGdv~~ 47 (48)
T PF02237_consen 24 DDGALLVRTEDGSIRTISSGDVSL 47 (48)
T ss_dssp TTSEEEEEETTEEEEEESSSEEEE
T ss_pred CCCEEEEEECCCCEEEEEEEEEEe
Confidence 368999999999 78899999753
No 90
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=46.12 E-value=2.1e+02 Score=25.18 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=47.4
Q ss_pred eeEEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEe-cce-EEecCCeEEEECCccEEEeeCCCCCeEEE
Q 019943 3 MLFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATE-CGK-LEVSPGEIAVLPQGFRFAVSLPDGPSRGY 74 (333)
Q Consensus 3 ~~~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te-~G~-l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~ 74 (333)
|-|++|.=...+--+. .+.-++-=|-++..+|++.|+.. .|. -.++||-+.++-+.=+|.+.+.. +.|..
T Consensus 33 mGFS~h~T~i~aGtet-~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~-dm~~v 104 (126)
T PF06339_consen 33 MGFSFHETTIYAGTET-HIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKT-DMRLV 104 (126)
T ss_pred CCEEEEEEEEeCCCee-EEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecC-CEEEE
Confidence 3455554433332222 22333445889999999999996 565 77999999999999999998744 44433
No 91
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=45.59 E-value=34 Score=29.68 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=12.3
Q ss_pred ceEEecCCeEEEEC
Q 019943 44 GKLEVSPGEIAVLP 57 (333)
Q Consensus 44 G~l~v~pGd~~VIP 57 (333)
..+.+.||.|+|||
T Consensus 111 ~~~~L~pG~YvIIP 124 (150)
T cd00214 111 LRFRLPPGEYVIVP 124 (150)
T ss_pred EEEEcCCCCEEEEe
Confidence 45779999999999
No 92
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=43.42 E-value=24 Score=32.08 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=34.5
Q ss_pred cCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEee
Q 019943 23 NADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 78 (333)
Q Consensus 23 n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~ 78 (333)
.+..--++|+++|+..|....+.+.+.+||.+++-....- .+ ++..+++++|.
T Consensus 132 ~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~--~l-~~~g~ll~v~i 184 (184)
T PF05962_consen 132 PAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDL--PL-TGDGQLLWVSI 184 (184)
T ss_dssp E--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECE--EE-EEECCEEEEE-
T ss_pred CCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCce--Ee-cCCeeEEEEeC
Confidence 4566677799999888777777899999999998774433 22 34667777763
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.95 E-value=11 Score=38.66 Aligned_cols=17 Identities=35% Similarity=0.835 Sum_probs=14.5
Q ss_pred cCCCCceeeeccccccc
Q 019943 315 NESDGELTMWDMEQRIL 331 (333)
Q Consensus 315 ~~~~~~~~~~~~~~~~~ 331 (333)
---||++.+|||+||.+
T Consensus 85 Gs~DG~VkiWnlsqR~~ 101 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQREC 101 (433)
T ss_pred cccCceEEEEehhhhhh
Confidence 34699999999999974
No 94
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=38.37 E-value=8.6 Score=32.84 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=44.7
Q ss_pred cCCCCCCCCCCCCCCccceeEEeeccccc---ccCC-------------cCCCeeeeecCCCCCCCChhHHHHHHhcCCC
Q 019943 198 VAEHTFRPPYYHRNCMSEFMGLIRGGYEA---KADG-------------FLPGGASLHSCMTPHGPDTKTYEATIARGSE 261 (333)
Q Consensus 198 ~~~~t~rpPyyHrN~dsE~m~~i~G~y~a---~~~g-------------~~pG~~SlHp~g~pHGP~~~~~e~a~~~~~~ 261 (333)
..++++++|.|| -..|+++.++|.-.. ..++ +++|.+..-|+|.+|=-- +.+
T Consensus 41 i~pg~~~~Ph~h--~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~------n~~---- 108 (144)
T PF00190_consen 41 IEPGGLRAPHYH--NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWII------NDG---- 108 (144)
T ss_dssp EETTEEEEEEEE--SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEE------ECS----
T ss_pred hhcCCccceeEe--eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEE------cCC----
Confidence 368999999888 346899989886541 0112 889999999999999221 111
Q ss_pred CCCceeecceEEEEeeccCc
Q 019943 262 AGPYKITDTMAFMFESCLIP 281 (333)
Q Consensus 262 ~~P~~~~~~lAfM~eT~~~l 281 (333)
..+....++|+|..+-
T Consensus 109 ----~~~~~~~~~f~~~~~~ 124 (144)
T PF00190_consen 109 ----DDEALVLIIFDTNNPP 124 (144)
T ss_dssp ----SSSEEEEEEEEESSTT
T ss_pred ----CCCCEEEEEEECCCCc
Confidence 0134567788888873
No 95
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=37.53 E-value=16 Score=32.89 Aligned_cols=72 Identities=26% Similarity=0.372 Sum_probs=39.6
Q ss_pred eEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccc--------cCCcCCCeeeeecCCCCCCCChhHHHHHHhcC
Q 019943 188 DFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAK--------ADGFLPGGASLHSCMTPHGPDTKTYEATIARG 259 (333)
Q Consensus 188 dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~--------~~g~~pG~~SlHp~g~pHGP~~~~~e~a~~~~ 259 (333)
||.|+. +.-..-|-= ||-|--.|+.+-+.|+-.-+ .--|..|-+-|.|..+||-|+
T Consensus 33 ~f~Vmv----VGGPN~R~D-yHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~----------- 96 (151)
T PF06052_consen 33 DFIVMV----VGGPNQRTD-YHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQ----------- 96 (151)
T ss_dssp SEEEEE----EESSB--SS-EEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEE-----------
T ss_pred CeEEEE----EcCCCCCCc-cccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCc-----------
Confidence 566543 543344555 79998889888888853222 114899999999999999887
Q ss_pred CCCCCceeecceEEEEeeccCc
Q 019943 260 SEAGPYKITDTMAFMFESCLIP 281 (333)
Q Consensus 260 ~~~~P~~~~~~lAfM~eT~~~l 281 (333)
+..+++..-+|-.++-
T Consensus 97 ------R~~~tiGLViEr~R~~ 112 (151)
T PF06052_consen 97 ------RPADTIGLVIERKRPE 112 (151)
T ss_dssp ------E-TT-EEEEEEE---T
T ss_pred ------CCCCcEEEEEEeccCC
Confidence 3346777777766654
No 96
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=37.08 E-value=79 Score=23.10 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=25.1
Q ss_pred ecCCCCEEEEEEeCeEEEEEec--ce----EEecCCeEE
Q 019943 22 CNADGDFLVVPQKGRLWIATEC--GK----LEVSPGEIA 54 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~--G~----l~v~pGd~~ 54 (333)
.+...+.++++.+|.+.+.... |. -.+.+|+++
T Consensus 13 ~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 13 QGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp TTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred CCCcCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 4666889999999999998865 43 256777765
No 97
>PHA02984 hypothetical protein; Provisional
Probab=36.87 E-value=1.2e+02 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=43.3
Q ss_pred CCEEEEEEeCeEEEEEecce----EEecCCeEEEECCccEEEeeCCCCCeEEEEEee
Q 019943 26 GDFLVVPQKGRLWIATECGK----LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEI 78 (333)
Q Consensus 26 gDeL~~v~~G~l~l~te~G~----l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~ 78 (333)
+=+.++-++|++.++...|. -.+..||-+.+--+++|++...++..++.|+=-
T Consensus 93 Ey~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y 149 (286)
T PHA02984 93 EYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITY 149 (286)
T ss_pred cEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEE
Confidence 33455778999999998775 569999999999999999988777777777643
No 98
>KOG4046 consensus RNase MRP and P, subunit POP4/p29 [RNA processing and modification]
Probab=36.14 E-value=52 Score=31.38 Aligned_cols=50 Identities=30% Similarity=0.451 Sum_probs=39.5
Q ss_pred EeCeEEEEEe-cceEEecCCeEEEECC-ccEEEeeCCCCCeEEEEEeecCCceec
Q 019943 33 QKGRLWIATE-CGKLEVSPGEIAVLPQ-GFRFAVSLPDGPSRGYIAEIFGTHFQL 85 (333)
Q Consensus 33 ~~G~l~l~te-~G~l~v~pGd~~VIPR-G~~~Rv~~~~~~~r~~iiE~~g~~~~l 85 (333)
++|-..++|. +=.|-.+...++|||+ |+.|++... ..+++++.+|.||.+
T Consensus 153 l~GI~l~etkh~fklitke~ri~~IPK~~cVf~~~~g---~~~~~f~i~g~~f~~ 204 (224)
T KOG4046|consen 153 LLGIVLLETKHFFKLITKENRIVVIPKKECVFAFITG---VQGLMFSIFGDHFGI 204 (224)
T ss_pred eeeEEeeecchhhhhhccCCeEEEEeccCcEEEEEeC---CccEEEEEecccccc
Confidence 6777778775 4457778889999996 899999873 234999999999866
No 99
>PRK15044 transcriptional regulator SirC; Provisional
Probab=35.59 E-value=1.2e+02 Score=30.23 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=42.4
Q ss_pred CEEEEEEeCeEEEEEecce-EEecCCeEEEECCccEEEeeCC--CCCeEEEEEeec
Q 019943 27 DFLVVPQKGRLWIATECGK-LEVSPGEIAVLPQGFRFAVSLP--DGPSRGYIAEIF 79 (333)
Q Consensus 27 DeL~~v~~G~l~l~te~G~-l~v~pGd~~VIPRG~~~Rv~~~--~~~~r~~iiE~~ 79 (333)
--||-+.+|.++|++|.|. +....-.+++.|||-.-.+... ++.....++|..
T Consensus 41 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~l~k~~~i~~~~~~~~~~~~~~~~~i~ 96 (295)
T PRK15044 41 CLLFKLNKGSLRIENEFGEFIEQSAPCLFLLEKDQTITLSMSEIEGHIDFSSLEVS 96 (295)
T ss_pred eEEEEEecCeEEEEecCCceEEecCCeeEEEeCCCEEEEeHhhhCCcceEEEEEcC
Confidence 3688999999999999997 7788888999999988776542 346677777764
No 100
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=34.53 E-value=61 Score=33.23 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=34.6
Q ss_pred cCCeEEEECCccEE----EeeCCCCCeEEEEEeecCCceecCC----------CCCCCCCCCCCCCC
Q 019943 49 SPGEIAVLPQGFRF----AVSLPDGPSRGYIAEIFGTHFQLPD----------LGPIGANGLAAPRD 101 (333)
Q Consensus 49 ~pGd~~VIPRG~~~----Rv~~~~~~~r~~iiE~~g~~~~lPe----------~GpiG~ngla~~RD 101 (333)
.-|..++||||++- +-....|..|++++-.. +.+|+ -+++|+.|+-..-|
T Consensus 215 ~~G~~lLIPkGS~liG~Y~s~v~~GQ~Rv~V~W~R---i~~P~G~~I~L~spgaD~lG~aG~~G~Vd 278 (376)
T PRK13855 215 TTNNVVLLDRGTTVVGEIQRGLQQGDARVFVLWDR---AETPDHAMISLSSPGADELGRSGLPGTVD 278 (376)
T ss_pred CCCCEEEecccCEEEEEeCCCCccccceeeeeeee---EeCCCCcEEeCCCCCcccccCCCCCcccc
Confidence 36889999999974 44445578899987653 55564 45677777765444
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.01 E-value=18 Score=36.37 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.8
Q ss_pred CCccCcCCCCceeeeccccc
Q 019943 310 YEEADNESDGELTMWDMEQR 329 (333)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~ 329 (333)
.-.-.+-|||.+.||||++.
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 34667889999999999886
No 102
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=33.42 E-value=30 Score=33.46 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=30.4
Q ss_pred ceecCCCCEEEEEEeCeEEEEEec--ceEEecCCeEEEECCccEEEeeCCCCCeEEEE
Q 019943 20 AFCNADGDFLVVPQKGRLWIATEC--GKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYI 75 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te~--G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~i 75 (333)
...+....|=.|+++|++...++. ..-.+.+|.|+--|.+++|++...+.+|-+||
T Consensus 185 ~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~~~e~~~vlyI 242 (251)
T PF14499_consen 185 RIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIFITEDECVLYI 242 (251)
T ss_dssp SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E------EESS-EEEEE
T ss_pred ceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCcccccccccCCCEEEEE
Confidence 345666777789999999996643 34778999999999999999963355666655
No 103
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=32.46 E-value=1.3e+02 Score=28.69 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=36.9
Q ss_pred CCCCEEEEEEeCeEEEEE--ecceE----EecC-CeEEEECCccEEEeeCCCCCeE
Q 019943 24 ADGDFLVVPQKGRLWIAT--ECGKL----EVSP-GEIAVLPQGFRFAVSLPDGPSR 72 (333)
Q Consensus 24 ~DgDeL~~v~~G~l~l~t--e~G~l----~v~p-Gd~~VIPRG~~~Rv~~~~~~~r 72 (333)
+.-.+.+.|++|++.+.. +.|.. .+.+ ++..+||.+.-|++...++.++
T Consensus 31 ~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~ 86 (287)
T PRK12335 31 EGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLE 86 (287)
T ss_pred CCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcE
Confidence 567899999999999887 55642 3444 5566899999999998655544
No 104
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=32.35 E-value=1.8e+02 Score=21.51 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=25.4
Q ss_pred eecCCCCEEEEEEeCeEEEEEec--ce----EEecCCeEEEE
Q 019943 21 FCNADGDFLVVPQKGRLWIATEC--GK----LEVSPGEIAVL 56 (333)
Q Consensus 21 ~~n~DgDeL~~v~~G~l~l~te~--G~----l~v~pGd~~VI 56 (333)
..+...+.++++.+|.+.+.... |. ..+.+|+++=.
T Consensus 30 ~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 30 RQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred cCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34556789999999999987654 31 34667777654
No 105
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=32.06 E-value=73 Score=27.15 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=34.4
Q ss_pred cCCCCCCCCCCCCCCccceeEEeecccccc----------cCCcCCCeeeeecCCCCCCC
Q 019943 198 VAEHTFRPPYYHRNCMSEFMGLIRGGYEAK----------ADGFLPGGASLHSCMTPHGP 247 (333)
Q Consensus 198 ~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~----------~~g~~pG~~SlHp~g~pHGP 247 (333)
..+++..+|.+|.|. .|+++.+.|...-. ..-+.+|.+-+=|.+++|.-
T Consensus 37 i~pg~~~~~h~H~~~-~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~ 95 (146)
T smart00835 37 LEPGGMLPPHYHPRA-TELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQ 95 (146)
T ss_pred ecCCcCcCCeeCCCC-CEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEE
Confidence 345555678788665 48888888874321 12389999999999999844
No 106
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=32.00 E-value=2.5e+02 Score=27.53 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=49.2
Q ss_pred EEEEEEeeCCCCCCCceec-CCCCEEEEEEeCeEEEEEe------cc-eE---EecCCeEEEECCccEEEeeCCCCCeEE
Q 019943 5 FTCNRYTANKSMDNCAFCN-ADGDFLVVPQKGRLWIATE------CG-KL---EVSPGEIAVLPQGFRFAVSLPDGPSRG 73 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n-~DgDeL~~v~~G~l~l~te------~G-~l---~v~pGd~~VIPRG~~~Rv~~~~~~~r~ 73 (333)
+++.+|....-- .+--+ .+-+-.+++++|.+++... .| ++ +=+|=|-|.||.|..|++.+ ..++++
T Consensus 29 VGF~~~~L~~Ge--s~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA-~t~~~v 105 (270)
T COG3718 29 VGFRLLRLAAGE--SATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTA-TTDLEV 105 (270)
T ss_pred EEEEEEEccCCC--cccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEe-ecceEE
Confidence 345555554432 12233 3444556889999999752 23 23 33466999999999999998 447899
Q ss_pred EEEeecC
Q 019943 74 YIAEIFG 80 (333)
Q Consensus 74 ~iiE~~g 80 (333)
-+|++.|
T Consensus 106 AvC~AP~ 112 (270)
T COG3718 106 AVCSAPG 112 (270)
T ss_pred EEEeCCC
Confidence 9999886
No 107
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=31.08 E-value=18 Score=33.34 Aligned_cols=52 Identities=27% Similarity=0.512 Sum_probs=31.1
Q ss_pred CeEeeecCCccceEeccCCceeccc-cccccCCCCcceEEeec-CCCCCceeeeEEEeCCc
Q 019943 137 FNVVAWHGNYVPYKYDLSKFCPFNT-VLVDHGDPSINTVLTAP-TDKPGVALLDFVIFPPR 195 (333)
Q Consensus 137 fDVVgW~G~~~Pykynl~~F~pi~s-~~~dH~dPsi~tvlta~-s~~~g~~~~dFviF~PR 195 (333)
+|--||+|.++.|++|+.- .+..+ . +=.--++++| +...|....|.++|...
T Consensus 111 LNFtGWR~~WV~y~~Dm~g-~~~~g~~------~md~l~i~AP~~~~~G~lf~D~l~~~~~ 164 (178)
T PF09092_consen 111 LNFTGWRAAWVSYERDMQG-RPEEGSK------DMDSLRITAPANDPSGTLFFDRLIFSVK 164 (178)
T ss_dssp ---SEEEEEEEETTTTSEE----TT-----------EEEEE--TTSSEEEEEEEEEEEEEE
T ss_pred eecccceeeeeeehhhccC-CcccCcc------eeeEEEEEccccCCCccEEEEEEeeccc
Confidence 4566999999999999654 33322 1 1123567777 44579999999998754
No 108
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=30.88 E-value=1.3e+02 Score=22.88 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=33.5
Q ss_pred ecCCCCEEEEEEeCeEEEEEec--ceEEecCCeEEEECCccEEEeeC
Q 019943 22 CNADGDFLVVPQKGRLWIATEC--GKLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te~--G~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
+...+-. +-+++|++-|..+. ++.-+++||-+.+++|-+--++.
T Consensus 13 r~~~~~~-l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 13 RAAAGQR-LRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EcCCCcE-EEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 3333333 88899999997763 56889999999999998876654
No 109
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=29.96 E-value=1.4e+02 Score=25.52 Aligned_cols=49 Identities=18% Similarity=0.061 Sum_probs=35.2
Q ss_pred cCCCCCCCCCCCCCCccceeEEeecccccc------cCCcCCCeeeeecCCCCCCCC
Q 019943 198 VAEHTFRPPYYHRNCMSEFMGLIRGGYEAK------ADGFLPGGASLHSCMTPHGPD 248 (333)
Q Consensus 198 ~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~------~~g~~pG~~SlHp~g~pHGP~ 248 (333)
..+++-.+..+|.+ +|+++.+.|...-. ...+.||-+-+-+.+.+|+-.
T Consensus 42 l~pG~~~~~h~h~~--~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~ 96 (125)
T PRK13290 42 IYAGTETHLHYKNH--LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLR 96 (125)
T ss_pred ECCCCcccceeCCC--EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEE
Confidence 45665556666755 49999998876433 224899999999999999653
No 110
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.39 E-value=32 Score=36.57 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEecCCeEEEECCccEEEeeCCC
Q 019943 46 LEVSPGEIAVLPQGFRFAVSLPD 68 (333)
Q Consensus 46 l~v~pGd~~VIPRG~~~Rv~~~~ 68 (333)
-.++|||++.+|||+.|+-..++
T Consensus 383 ~vle~GDllYfPRG~IHQA~t~~ 405 (629)
T KOG3706|consen 383 FVLEPGDLLYFPRGTIHQADTPA 405 (629)
T ss_pred hhcCCCcEEEecCcceeeccccc
Confidence 35899999999999999987644
No 111
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=28.71 E-value=6.1 Score=34.61 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=28.0
Q ss_pred eecCCccceEeccCCceeccccccccCCCCcceEEee
Q 019943 141 AWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTA 177 (333)
Q Consensus 141 gW~G~~~Pykynl~~F~pi~s~~~dH~dPsi~tvlta 177 (333)
-|+|.+.| ++.+|..+.+-.+||.|+- |.-|+.
T Consensus 5 ~w~~~~ap---s~~~fe~La~~A~d~lP~e-fr~l~~ 37 (136)
T COG3824 5 TWSGRLAP---SLERFEELASDALDHLPQE-FRDLMG 37 (136)
T ss_pred ccccccCC---CHHHHHHHHHHHHHhCcHH-HHHHhc
Confidence 58998887 7999999999999999776 666665
No 112
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=26.87 E-value=98 Score=27.13 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=36.1
Q ss_pred ceecCCCCEEEEEEeCeEEEEE--ecce----EEecCCeEEEE----CCc--cEEEeeCCCCCeEEEEEee
Q 019943 20 AFCNADGDFLVVPQKGRLWIAT--ECGK----LEVSPGEIAVL----PQG--FRFAVSLPDGPSRGYIAEI 78 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~t--e~G~----l~v~pGd~~VI----PRG--~~~Rv~~~~~~~r~~iiE~ 78 (333)
+..+...+.+++|++|.+++.. +.|. -.+.+||++-. -.+ ..+.+.+ ..+++++.|..
T Consensus 32 ~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a-~~~~~v~~i~~ 101 (211)
T PRK11753 32 IHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRA-KTACEVAEISY 101 (211)
T ss_pred EeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEE-cCcEEEEEEcH
Confidence 3456778899999999999884 3454 24788888632 211 2223333 23566666654
No 113
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=26.74 E-value=99 Score=26.20 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.4
Q ss_pred cCCeEEEECCccEEEeeCCCCCeEEEEEeecCCceecCC
Q 019943 49 SPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPD 87 (333)
Q Consensus 49 ~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~lPe 87 (333)
.+||.|+||.|.+--+.......+.+++ ++.+.+++
T Consensus 10 ~~g~~V~I~~g~~v~lD~~~~~l~~l~I---~G~L~f~~ 45 (125)
T PF10162_consen 10 GAGDNVVIPAGQTVLLDVSTPKLGSLII---GGTLIFDD 45 (125)
T ss_pred CCCCEEEECCCCEEEEcCCChheeEEEE---EEEEEEcc
Confidence 4799999999998888765445666666 35577653
No 114
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=26.20 E-value=35 Score=33.07 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=24.8
Q ss_pred ceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecC
Q 019943 44 GKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 80 (333)
Q Consensus 44 G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g 80 (333)
-.+.|+|||.+.||.|+-|-. ..++++|.-.
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~------~g~~~~Eiq~ 181 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY------KGGLVLEVMQ 181 (302)
T ss_pred cccccCCCCEEEeCCCCcccc------cCceEEEEEc
Confidence 358899999999999999963 3477777753
No 115
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=25.83 E-value=55 Score=33.58 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEecCCeEEEECCccEEEeeCC
Q 019943 46 LEVSPGEIAVLPQGFRFAVSLP 67 (333)
Q Consensus 46 l~v~pGd~~VIPRG~~~Rv~~~ 67 (333)
..+.|||++.||+|.-|+-.+.
T Consensus 181 ~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 181 EVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred hhcCCCceeecCCCCCcCCccc
Confidence 3588999999999999998763
No 116
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=24.98 E-value=89 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=18.2
Q ss_pred EEEeCeEEEEEecce--------------EEecCCeEEEE
Q 019943 31 VPQKGRLWIATECGK--------------LEVSPGEIAVL 56 (333)
Q Consensus 31 ~v~~G~l~l~te~G~--------------l~v~pGd~~VI 56 (333)
....|.+++++|.|. +.+.|||.|+|
T Consensus 16 ~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~V 55 (75)
T COG0361 16 MLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLV 55 (75)
T ss_pred ecCCCEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEE
Confidence 345577888888873 56778887765
No 117
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=24.28 E-value=1.3e+02 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=25.6
Q ss_pred eCeEEEEEecc--eEEecCCeEEEECCccEEEeeC
Q 019943 34 KGRLWIATECG--KLEVSPGEIAVLPQGFRFAVSL 66 (333)
Q Consensus 34 ~G~l~l~te~G--~l~v~pGd~~VIPRG~~~Rv~~ 66 (333)
-|++.++..+| .+..++|+.|+-|..+.|++.+
T Consensus 129 GGEl~~~~~~g~~~Vkp~aG~~vlfps~~lH~v~p 163 (226)
T PRK05467 129 GGELVIEDTYGEHRVKLPAGDLVLYPSTSLHRVTP 163 (226)
T ss_pred CCceEEecCCCcEEEecCCCeEEEECCCCceeeee
Confidence 45666665555 3667899999999999999986
No 118
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.01 E-value=1.4e+02 Score=26.49 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCeEEEECCccEEEeeCCCCCeEEEEEeecCCceecCCCCCCCCCCCCC
Q 019943 50 PGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAA 98 (333)
Q Consensus 50 pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~lPe~GpiG~ngla~ 98 (333)
-|--+=||.|+.-|.++ ...-.+-|++.- +.=++ .|-|||.+
T Consensus 57 ~G~RLdIPAGTAVRFEP-G~~k~V~LV~ig-G~r~V-----~Gfnglv~ 98 (136)
T PRK13201 57 YGKHLDIPAGAAVRFEP-GDKKEVQLVEYA-GKRKI-----FGFRGMVN 98 (136)
T ss_pred cCcccccCCCCeEeECC-CCeEEEEEEEcc-CceEE-----EccCcccc
Confidence 35567799999999987 334456666654 43433 35566654
No 119
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=22.81 E-value=1.8e+02 Score=21.64 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=18.4
Q ss_pred ceecCCCCEEEEEEeCeEEEEEe
Q 019943 20 AFCNADGDFLVVPQKGRLWIATE 42 (333)
Q Consensus 20 ~~~n~DgDeL~~v~~G~l~l~te 42 (333)
+..+...+.++++.+|.+.+...
T Consensus 29 ~~~g~~~~~~y~v~~G~v~~~~~ 51 (120)
T smart00100 29 IRQGDVGDSFYIILSGEVRVYKV 51 (120)
T ss_pred EeCCCcCCcEEEEEeeEEEEEEE
Confidence 33566778899999999998865
No 120
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=22.51 E-value=24 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=32.9
Q ss_pred CCCCCccceeEEeecccccccCCcCCCeeeeecCCCCCCCC
Q 019943 208 YHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPD 248 (333)
Q Consensus 208 yHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~pHGP~ 248 (333)
.|+....|.++.+.|.+.-..+.+.+|..-..|.++.|.|.
T Consensus 39 ~H~H~g~ee~~VLeG~~~d~~~~~~~G~~~~~p~g~~h~~~ 79 (91)
T PF12973_consen 39 RHRHPGGEEILVLEGELSDGDGRYGAGDWLRLPPGSSHTPR 79 (91)
T ss_dssp EEEESS-EEEEEEECEEEETTCEEETTEEEEE-TTEEEEEE
T ss_pred ccCCCCcEEEEEEEEEEEECCccCCCCeEEEeCCCCccccC
Confidence 47777789999999999755445999999999999999885
No 121
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=22.08 E-value=2.5e+02 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=27.7
Q ss_pred ecCCCCEEEEEEeCeEEEEEe--cce---E-EecCCeEEEECCc
Q 019943 22 CNADGDFLVVPQKGRLWIATE--CGK---L-EVSPGEIAVLPQG 59 (333)
Q Consensus 22 ~n~DgDeL~~v~~G~l~l~te--~G~---l-~v~pGd~~VIPRG 59 (333)
.+...+.++++++|.+++... .|. + .+.+||++=...+
T Consensus 52 ~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~ 95 (230)
T PRK09391 52 EGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESG 95 (230)
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCC
Confidence 466789999999999999863 454 2 2579997754433
No 122
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=21.98 E-value=1.6e+02 Score=25.58 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCEEEEEEeCeEEEEEe--cce---EE-ecCCeEE
Q 019943 26 GDFLVVPQKGRLWIATE--CGK---LE-VSPGEIA 54 (333)
Q Consensus 26 gDeL~~v~~G~l~l~te--~G~---l~-v~pGd~~ 54 (333)
.+.++++.+|.+++... .|+ +. +.|||++
T Consensus 26 ~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~ 60 (202)
T PRK13918 26 SDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYF 60 (202)
T ss_pred CCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCee
Confidence 48899999999998664 454 22 3677765
No 123
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.25 E-value=2.7e+02 Score=28.17 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCC
Q 019943 25 DGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLP 67 (333)
Q Consensus 25 DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~ 67 (333)
-+.-++-|.+|++...-..-+....+||++|||.=-.|+....
T Consensus 280 t~s~iy~V~eGsg~~~Ig~~rf~~~~~D~fvVPsW~~~~~~~g 322 (351)
T COG3435 280 TDSTIYHVVEGSGYTIIGGERFDWSAGDIFVVPSWAWHEHVNG 322 (351)
T ss_pred cCCEEEEEEecceeEEECCEEeeccCCCEEEccCcceeecccC
Confidence 4467889999999999999999999999999999888888753
No 124
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=20.50 E-value=3.6e+02 Score=22.02 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=29.7
Q ss_pred EeCeEEEEEecceEEe-cCCeEEEECC-ccEEEeeCCCCCeEEEEEeecCCceec
Q 019943 33 QKGRLWIATECGKLEV-SPGEIAVLPQ-GFRFAVSLPDGPSRGYIAEIFGTHFQL 85 (333)
Q Consensus 33 ~~G~l~l~te~G~l~v-~pGd~~VIPR-G~~~Rv~~~~~~~r~~iiE~~g~~~~l 85 (333)
++|....||+.=-.-+ +.|...+||+ |+.|++.++++ ..++.+|.++..
T Consensus 29 i~GiVv~ET~nt~~I~t~~~~~~~IpK~~~vF~f~l~~~----~~~~i~G~~l~~ 79 (92)
T smart00538 29 IEGIVVDETRNTLKIETKEGRVKTVPKDGAVFEFELPGG----EIVRIDGDRLVG 79 (92)
T ss_pred cEEEEEEeeeeEEEEEeCCCcEEEEECCCeEEEEEECCC----eEEEEECceeee
Confidence 4566666665543222 2334666765 67899988653 667777777643
No 125
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.01 E-value=1.3e+02 Score=32.16 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=35.0
Q ss_pred EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecc---eEEecCCeE
Q 019943 5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECG---KLEVSPGEI 53 (333)
Q Consensus 5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G---~l~v~pGd~ 53 (333)
+--++|+.+-. -+=+++-|-|||+|-+|.+.+-+|+| -.++++|++
T Consensus 330 lk~qvfSPgDy---ICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~ 378 (536)
T KOG0500|consen 330 LKPQVFSPGDY---ICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSV 378 (536)
T ss_pred hcceeeCCCCe---EEecCcccceEEEEEccEEEEEecCCcEEEEEecCCce
Confidence 34455654433 24578889999999999999999999 477788775
Done!