BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019944
MLNFCLMLKSPSLTTSVSSCNNGRGGSCSVYWRRRRKAPVLLQVSAASYQKFVDFAVNET
KRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPK
PEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGG
RLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNC
EAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCED
GTVNEKRSIIGKSFEHRPWDSGGEFVGDNLKVN

High Scoring Gene Products

Symbol, full name Information P value
HY2
ELONGATED HYPOCOTYL 2 		protein from Arabidopsis thaliana 6.0e-103

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019944
        (333 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083484 - symbol:HY2 "ELONGATED HYPOCOTYL 2" s...  1020  6.0e-103  1


>TAIR|locus:2083484 [details] [associations]
            symbol:HY2 "ELONGATED HYPOCOTYL 2" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0010024 "phytochromobilin biosynthetic process"
            evidence=IEA;NAS] [GO:0016636 "oxidoreductase activity, acting on
            the CH-CH group of donors, iron-sulfur protein as acceptor"
            evidence=IEA] [GO:0050619 "phytochromobilin:ferredoxin
            oxidoreductase activity" evidence=ISS;IDA] [GO:0050897 "cobalt ion
            binding" evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0010019 "chloroplast-nucleus signaling pathway"
            evidence=IMP] InterPro:IPR009249 Pfam:PF05996 GO:GO:0009507
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0050897 EMBL:AC011436
            GO:GO:0010019 GO:GO:0010024 EMBL:AC009326 EMBL:AB045112
            EMBL:AY099706 EMBL:AY128900 EMBL:AY088874 IPI:IPI00518705
            IPI:IPI00531995 RefSeq:NP_566344.2 RefSeq:NP_850996.1
            UniGene:At.10486 ProteinModelPortal:Q9SR43 STRING:Q9SR43
            PaxDb:Q9SR43 PRIDE:Q9SR43 EnsemblPlants:AT3G09150.2 GeneID:820069
            KEGG:ath:AT3G09150 TAIR:At3g09150 eggNOG:NOG266783
            HOGENOM:HOG000029408 InParanoid:Q9SR43 KO:K08101 OMA:WTRPQET
            PhylomeDB:Q9SR43 ProtClustDB:CLSN2690528
            BioCyc:MetaCyc:MONOMER-13949 Genevestigator:Q9SR43 GO:GO:0050619
            Uniprot:Q9SR43
        Length = 329

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 182/294 (61%), Positives = 236/294 (80%)

Query:    34 RRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQ 93
             RRRK   LL+VSA SY++F + A+ ET++  VL PS LQEKY+++  +DGKTELQM +F+
Sbjct:    36 RRRKKRFLLRVSAVSYKEFAESALEETRKRIVLEPSHLQEKYSSMTGLDGKTELQMLAFK 95

Query:    94 APKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIH 153
             + KIRLLRSM+I+NE MQV DFA F +PE+D PIFCANFFT+ + NIVVLDLNPLH +  
Sbjct:    96 SSKIRLLRSMAIENETMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIVVLDLNPLHQLTD 155

Query:   154 HRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAF 213
               DY+DKYY  +M +   Y +  PWGG+LT ESIKFFSP+V+WT+F+SS++KH AL+SAF
Sbjct:   156 QTDYQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTRFSSSKEKHKALFSAF 215

Query:   214 MEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLL 273
             +EYY+AWL++  Q  EE + S +  NCEAQH+YLTWRA+KDPGHG+LK+L+GE  A +LL
Sbjct:   216 LEYYQAWLEMTIQVREEMEPSHVRANCEAQHKYLTWRAQKDPGHGLLKRLVGEAKAKELL 275

Query:   274 GNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFVG 327
              +FLFNG+ ELG+K F+DYFPEY  EDGTV++KRSIIGKS+E RPWD  G+F+G
Sbjct:   276 RDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTGQFIG 329


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      333       318   0.00083  116 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  239 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.69u 0.12s 23.81t   Elapsed:  00:00:01
  Total cpu time:  23.69u 0.12s 23.81t   Elapsed:  00:00:01
  Start:  Fri May 10 16:22:12 2013   End:  Fri May 10 16:22:13 2013

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