BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019944
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X9O|A Chain A, Structure Of 15, 16- Dihydrobiliverdin:ferredoxin
Oxidoreductase (Peba)
Length = 244
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 19/227 (8%)
Query: 60 TKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVF 118
TKR +P PL E + + +Q + P R R + + +QV + +
Sbjct: 22 TKRGG--SPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWRVTRLDAGDSLQVFNSVAY 79
Query: 119 PKPEFDVPIFCAN--FFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLL 176
P +D P+ + +F A + VLD PL + +DY D+Y+ L L + L
Sbjct: 80 PDYNYDHPLXGVDLLWFGARQKLVAVLDFQPL---VQDKDYLDRYFSGLKELNQRFPDL- 135
Query: 177 PWGGRLTSESI---KFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQA--VEET 231
G T S ++FS +++ + + Q +L AF + KA+ L D A + T
Sbjct: 136 --NGEETXRSFDPNQYFSSWLLFCRGGAEQADL-SLPKAFSAFLKAYWDLHDNAKSIPST 192
Query: 232 DVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLF 278
+ + N Q +Y + AE+DP HG+ G+ + L FLF
Sbjct: 193 IPPEEVKNL--QDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFLF 237
>pdb|2G18|A Chain A, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|B Chain B, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|C Chain C, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|D Chain D, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|E Chain E, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|F Chain F, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|G Chain G, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|H Chain H, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|I Chain I, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|J Chain J, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|K Chain K, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|L Chain L, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
Length = 253
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 95/208 (45%), Gaps = 31/208 (14%)
Query: 84 KTELQMSSFQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTA-ASTNIV 141
K ++ +Q P+ R + ++ ++ +L +FP+PE+D+P+F + +
Sbjct: 62 KLTIENRCYQTPQFRKMHLELAKVGNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAA 121
Query: 142 VLDLNPLHDVIHHRDYKDKYYKSLMPLG-LNYTK---LLPWGGRLTSESIKFFSPIVIWT 197
+ DL+P+H R + Y +L L LN+++ L WG FS I+
Sbjct: 122 IADLSPVH---LDRTLPESYNSALTSLNTLNFSQPRELPEWG--------NIFSDFCIFV 170
Query: 198 KFTSSQDKHDALYSAFMEYYKAWLKLMDQ-AVEETDVS-----QIMCNCEAQHRYLTWRA 251
+ +S +++ + F+ + +L++ Q A+ + VS QI+ QH Y + +
Sbjct: 171 RPSSPEEE-----AMFLGRVREFLQVHCQGAIAASPVSAEQKQQILA---GQHNYCSKQQ 222
Query: 252 EKDPGHGVLKKLIGETLAADLLGNFLFN 279
+ D VL+K G A + + LF+
Sbjct: 223 QNDKTRRVLEKAFGVDWAENYMTTVLFD 250
>pdb|3F0L|A Chain A, Crystal Structure Of Oxidized D105n Synechocystis Sp. Pcya
pdb|3F0M|A Chain A, Crystal Structure Of Radical D105n Synechocystis Sp. Pcya
Length = 248
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTA-ASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F N + + DL+P
Sbjct: 65 YQTPQFRKMHLELAKVGKGLDILHCVMFPEPLYGLPLFGCNIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|3NB8|A Chain A, Crystal Structure Of Oxidized H88q Synechocystis Sp. Pcya
pdb|3NB9|A Chain A, Crystal Structure Of Radical H88q Synechocystis Sp. Pcya
Length = 248
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 65 YQTPQFRKMHLELAKVGKGLDILQCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|4EOD|A Chain A, Crystal Structure Of H74e Synechocystis Sp. Pcya Sp. Pcya
Length = 248
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 65 YQTPQFRKMELELAKVGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|3I95|A Chain A, Crystal Structure Of E76q Mutant Pcya-Biliverdin Complex
Length = 248
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 65 YQTPQFRKMHLQLAKVGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|2D1E|A Chain A, Crystal Structure Of Pcya-Biliverdin Complex
pdb|2DKE|A Chain A, Crystal Structure Of Substrate-Free Form Of Pcya
pdb|3I8U|X Chain X, Crystal Structure Of Pcya-181,182-Dihydrobiliverdin
Complex
pdb|3I94|A Chain A, Crystal Structure Of Pcya-Biliverdin Xiii Alpha Complex
Length = 248
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 65 YQTPQFRKMHLELAKVGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|4EOE|A Chain A, Crystal Structure Of H74a Synechocystis Sp. Pcya
Length = 248
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 92 FQAPKIR-LLRSMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 65 YQTPQFRKMALELAKVGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|4EOC|A Chain A, Crystal Structure Of H74q Synechocystis Sp. Pcya
Length = 239
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 19/194 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R ++ ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 58 YQTPQFRKMQLELAKVGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 117
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PWG + SE F P + + Q
Sbjct: 118 S---DRQLPAAYQKSLAELGQPEFEQQRELPPWG-EIFSEYCLFIRPSNVTEEERFVQRV 173
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D VL+K G
Sbjct: 174 VDFLQIHXHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFG 224
Query: 266 ETLAADLLGNFLFN 279
E A + LF+
Sbjct: 225 EAWAERYMSQVLFD 238
>pdb|3AJG|A Chain A, Crystal Structure Of Pcya V225d-Biliverdin Ix Alpha
Complex
pdb|3AJG|B Chain B, Crystal Structure Of Pcya V225d-Biliverdin Ix Alpha
Complex
pdb|3AJH|A Chain A, Crystal Structure Of Pcya V225d-Biliverdin Xiii Alpha
Complex
pdb|3AJH|B Chain B, Crystal Structure Of Pcya V225d-Biliverdin Xiii Alpha
Complex
Length = 248
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 19/197 (9%)
Query: 92 FQAPKIRLLR-SMSIQNEVMQVLDFAVFPKPEFDVPIF-CANFFTAASTNIVVLDLNPLH 149
+Q P+ R + ++ + + +L +FP+P + +P+F C + + DL+P
Sbjct: 65 YQTPQFRKMHLELAKVGKGLDILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQ 124
Query: 150 DVIHHRDYKDKYYKSLMPLGL----NYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDK 205
R Y KSL LG +L PW G + SE F P + + Q
Sbjct: 125 S---DRQLPAAYQKSLAELGQPEFEQQRELPPW-GEIFSEYCLFIRPSNVTEEERFVQRV 180
Query: 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIG 265
D L + A E +Q + + + Q Y + + D L+K G
Sbjct: 181 VDFLQIHCHQSIVA---------EPLSEAQTLEHRQGQIHYCQQQQKNDKTRRDLEKAFG 231
Query: 266 ETLAADLLGNFLFNGIK 282
E A + LF+ I+
Sbjct: 232 EAWAERYMSQVLFDVIQ 248
>pdb|2LFU|A Chain A, The Structure Of A N. Meningitides Protein Targeted For
Vaccine Development
Length = 193
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 226 QAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLL-GNFLFNG 280
+AV T S + E +RYLT+ AEK PG ++ GE ++L G ++NG
Sbjct: 24 EAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNG 79
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 64 AVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDF----AVFP 119
A+L P L VAMD + +L F+ R++ + ++ V DF A
Sbjct: 149 ALLVPEKLTPHLKYYVAMDFQAKLG-DGFEGFYKSTYRTLGGETRILAVTDFEPTQARMA 207
Query: 120 KPEFDVPIFCANF 132
P FD P+F ANF
Sbjct: 208 FPCFDEPLFKANF 220
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 64 AVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDF----AVFP 119
A+L P L VAMD + +L F+ R++ + ++ V DF A
Sbjct: 149 ALLVPEKLTPHLKYYVAMDFQAKLG-DGFEGFYKSTYRTLGGETRILAVTDFEPTQARMA 207
Query: 120 KPEFDVPIFCANF 132
P FD P+F ANF
Sbjct: 208 FPCFDEPLFKANF 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,623,100
Number of Sequences: 62578
Number of extensions: 384303
Number of successful extensions: 757
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 13
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)