Query 019944
Match_columns 333
No_of_seqs 137 out of 176
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13250 phycoerythrobilin:fer 100.0 2.6E-74 5.7E-79 538.9 18.6 236 48-285 3-245 (248)
2 PRK13248 phycoerythrobilin:fer 100.0 1.4E-70 3.1E-75 513.7 19.1 235 42-280 7-253 (253)
3 PRK13249 phycoerythrobilin:fer 100.0 1.2E-70 2.5E-75 516.3 18.2 236 41-280 11-257 (257)
4 PRK13246 dihydrobiliverdin:fer 100.0 7.8E-70 1.7E-74 505.0 17.8 230 48-283 1-233 (236)
5 PRK13247 dihydrobiliverdin:fer 100.0 1.3E-68 2.9E-73 498.4 18.9 230 48-282 1-233 (238)
6 PRK02816 phycocyanobilin:ferre 100.0 1E-67 2.2E-72 493.9 20.9 224 48-282 11-243 (243)
7 PF05996 Fe_bilin_red: Ferredo 100.0 3.4E-65 7.4E-70 473.6 18.7 222 54-279 2-228 (228)
8 PF06405 RCC_reductase: Red ch 99.9 4.8E-23 1E-27 192.6 11.9 216 49-276 6-251 (255)
9 PLN02581 red chlorophyll catab 99.9 4.6E-22 9.9E-27 186.5 13.2 216 50-276 13-261 (267)
10 KOG1106 Uncharacterized conser 26.3 86 0.0019 28.8 3.8 88 121-228 52-141 (177)
11 PRK15379 pathogenicity island 23.6 99 0.0021 30.5 3.8 108 154-264 179-296 (317)
No 1
>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-74 Score=538.87 Aligned_cols=236 Identities=33% Similarity=0.634 Sum_probs=223.3
Q ss_pred chHHHHHHHHHHhhccCCcccccchhhhhhhccCC------CCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCC
Q 019944 48 SYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMD------GKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPK 120 (333)
Q Consensus 48 ~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~------g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~ 120 (333)
+|++|+++|+++|+.+++|+|+++|++|+++++.. .+++|+|||||++++|++|.++++ |+++|||||||||+
T Consensus 3 ~~~~Fl~~~~~~~~~~~~l~p~~l~~~l~~~~~~~~~~~~~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lqVLn~V~fP~ 82 (248)
T PRK13250 3 LYQPFLDYAITLLTERLELQPYPIPAGFERKEAMTGKGKKQEEVVTTSYAFQSPKLRQIRAAHVQGGSALQVLNFVIFPH 82 (248)
T ss_pred chHHHHHHHHHHHhhcCCCCCCCCchhhhhhhhhccccccCCceEEeehhhcCcHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 69999999999998889999999999999998843 468999999999999999999999 99999999999999
Q ss_pred CCCCCccccccccccCCceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEEecC
Q 019944 121 PEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFT 200 (333)
Q Consensus 121 p~yDLPiFG~DlV~~~~~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R~~ 200 (333)
|+|||||||||||++|++++|||||||+++. +.+|.++|++.+++++++||++||||+++|+|++|||||+|||||+.
T Consensus 83 p~yDLPiFGaDlv~~~~~~laalDlqPl~~~--~~~Y~~~~~~~l~~~~~~~r~l~~wg~~~~~e~~~~FSp~~lf~Rp~ 160 (248)
T PRK13250 83 LNYDLPFFGADLVTLPGGHLIALDMQPLFRD--DPAYQAKYTEPILPLFNAHQAHLPWGGDFPEEAKPFFSPAFLWTRPQ 160 (248)
T ss_pred cCCCCCccceeeeecCCceEEEEECCcccCc--HHHHHHHHHHhhHHHHhhhhhcCCccccCcchhHhhcCCceEEEecC
Confidence 9999999999999999877888999999963 25999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccCCC
Q 019944 201 SSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNG 280 (333)
Q Consensus 201 ~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd~ 280 (333)
+.+++++.++.||.+||+.|++++.+|+++++.+.+.++.++|++||+||+|||||||||+|+||++|||+||++||||.
T Consensus 161 ~~~~~e~~lf~af~~YL~~y~~~~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yi~~~LFd~ 240 (248)
T PRK13250 161 ETEVVETRVFEAFKDYLQAYLDFVEQAEAVTDSEQLAEILQAQLRYLRYRAEKDPARGMFTRFYGEEWTEEYIHGFLFDL 240 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhcCcCC
Confidence 99988999999999999999999999999988877889999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 019944 281 IKELG 285 (333)
Q Consensus 281 ~~~l~ 285 (333)
...+.
T Consensus 241 ~~~~~ 245 (248)
T PRK13250 241 ERKLS 245 (248)
T ss_pred Ccccc
Confidence 76653
No 2
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-70 Score=513.73 Aligned_cols=235 Identities=22% Similarity=0.467 Sum_probs=217.7
Q ss_pred eec-cccchHHHHHHHHHHhhccCCcccccchhhhhhhcc----C--CCCeEEEeccc-cccccceeeeeEEecCCCceE
Q 019944 42 LQV-SAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVA----M--DGKTELQMSSF-QAPKIRLLRSMSIQNEVMQVL 113 (333)
Q Consensus 42 ~~~-~~~~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~----~--~g~~~i~~~~~-qs~~iR~~R~~hlEG~~lqVL 113 (333)
|.. ++|.|++|+++|+..|.. ++..|+|+|.+|+++++ . +.+++|.+|+| +++++|++|.+||||+++|||
T Consensus 7 ~~~~~~w~~~~fl~~l~~~l~~-~~~~p~~i~~~f~~~e~~~~~~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~LqVL 85 (253)
T PRK13248 7 IFYRPDWRWHNFLKYLTNNLSK-YNCLEKKIPSEYSYKDSTYGSKKSKKNVNLSTWGVTHKKRIQFARAVCINSPNYSVL 85 (253)
T ss_pred cccCcCccchHHHHHHHHHHHH-cCCceecCcHhhhhhhhcccccccCCceEEEeeecccChHHHHHhhheecCCCCeEE
Confidence 445 789999999999999976 69999999999999855 2 34699999999 999999999999999999999
Q ss_pred EEEEeCCCCCCCccccccccccCCceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccc
Q 019944 114 DFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPI 193 (333)
Q Consensus 114 n~VifP~p~yDLPiFG~DlV~~~~~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~ 193 (333)
||||||+|+|||||||||||+++++++|||||||++++ +.+|.++|+++|+++..++++++|||+++|+|+.+||||+
T Consensus 86 n~V~fP~p~yDLPiFGaDlV~~~~~~~aIlDlqPl~~~--~~~Y~~~~~~~L~~l~~~~~~~lP~~g~~~~e~~~~FSp~ 163 (253)
T PRK13248 86 NFLIIPNTIYNVPFFGVDFVSLPNSHLLVLDFQPSLKI--QNQYNNELLEKLIKLKNHCHSSLPLAEKMSADVARFFSPG 163 (253)
T ss_pred EEEecCCCCCCCCccceeeeccCCCcEEEEECCccccC--hHHHHHHHHhhccchhhhhHhhCCCCCcCcchhHhhCCCc
Confidence 99999999999999999999999888999999999963 5589999999999999999999999999999999999999
Q ss_pred eEEEecCCchh----hhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHH
Q 019944 194 VIWTKFTSSQD----KHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLA 269 (333)
Q Consensus 194 ~Lf~R~~~~ee----~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWA 269 (333)
|||||+.+.+| +++.+++||.+||++|++++.+++++++. +..++.++|++||+||+|||||||||+|+||++||
T Consensus 164 ~Lf~R~~~~~e~~~~ie~~~~~af~~YL~~y~~l~~~a~~~~~~-~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWa 242 (253)
T PRK13248 164 VIWSKLPKEERSDFLIENQLYTSFKEYLDLYLEILFESKEVNIG-LQKELINGQNNYLNYRRDNDPARPMLSSLFGKEFT 242 (253)
T ss_pred eEEEecCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-cHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHH
Confidence 99999976554 57899999999999999999999998554 55788899999999999999999999999999999
Q ss_pred HHHHHhccCCC
Q 019944 270 ADLLGNFLFNG 280 (333)
Q Consensus 270 eryI~e~LFd~ 280 (333)
|+||++||||.
T Consensus 243 e~yI~~~LFd~ 253 (253)
T PRK13248 243 ESLINEVLFTT 253 (253)
T ss_pred HHHHHhcCCCC
Confidence 99999999984
No 3
>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-70 Score=516.32 Aligned_cols=236 Identities=27% Similarity=0.484 Sum_probs=215.7
Q ss_pred eeeccccchHHHHHHHHHHhhccCCcccccchhhhhhhccC----CC--CeEEEeccccccccceeeeeEEe-cCCCceE
Q 019944 41 LLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAM----DG--KTELQMSSFQAPKIRLLRSMSIQ-NEVMQVL 113 (333)
Q Consensus 41 ~~~~~~~~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~----~g--~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVL 113 (333)
.|++++|.|++|+++|++.|.. ++++|+++|++|+++++. .+ .+++++|+|+++++|++|.++++ |+++|||
T Consensus 11 ~~~~~~w~~~~fl~~~~~~l~~-~~l~p~~ip~~l~~~e~~~~~~~~~~~i~~~~~~~~~~~fRk~r~~~~~~G~~lqVL 89 (257)
T PRK13249 11 PVSIPGWRWQPFLDDAIKALSP-FQPEPYPVAEDFLQRESQTGSKSKPVKVTTATWACKTEKIRQVRAACVEAGEAASVL 89 (257)
T ss_pred CeecccccchHHHHHHHHHHhh-CCCcccCCChhhhhhhcccccccCcceEEEeeeccCChHHHHHHHHHhhcCCCcEEE
Confidence 6788999999999999999975 799999999999999884 22 25556666667999999999999 9999999
Q ss_pred EEEEeCCCCCCCccccccccccCCceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccc
Q 019944 114 DFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPI 193 (333)
Q Consensus 114 n~VifP~p~yDLPiFG~DlV~~~~~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~ 193 (333)
||||||+|+|||||||||||++|+++.++|||||+++. +++|.++|+++|++++++|++++||||++|+|++|||||+
T Consensus 90 n~V~fP~p~yDLPiFGaDlv~~~~~~~lalDlqPl~~~--~~~~~~~y~~~L~~~~~~~~~~lP~~g~i~~e~~~fFSp~ 167 (257)
T PRK13249 90 NFVINPSNRFDLPFFGADLVTLPNGHLLALDLQPALKT--DEIHTQHVWERLMPIFEHWQSKLPSGGPIPEEAQPYFSPG 167 (257)
T ss_pred EEEecCCcCCCCCccceeeeecCCceEEEEecCccccc--cHHHHHHHHHHHHHHHHhhHHhCCCcCCccchhhhcCCCc
Confidence 99999999999999999999999876667999999963 5699999999999999999998889999999999999999
Q ss_pred eEEEecCCchhh----hHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHH
Q 019944 194 VIWTKFTSSQDK----HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLA 269 (333)
Q Consensus 194 ~Lf~R~~~~ee~----~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWA 269 (333)
|||||+.+.+|. +.+|++||.+||+.|++++.+|+++ +..++.++.++|++||+||+|||||||||+|+||++||
T Consensus 168 ~lf~Rp~~~~e~~~~~~~~l~~AF~~YL~~~~~l~~~a~~~-~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWa 246 (257)
T PRK13249 168 FLWTRLPLGEEGDNLISEVIRPAFDEYLNLYLDLVEEAKPV-SKERAFKLLEGQKRYTSYRAEKDPARGMLTRFHGSEWT 246 (257)
T ss_pred eEEEecCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhCHHHH
Confidence 999999876654 7899999999999999999999998 55577888999999999999999999999999999999
Q ss_pred HHHHHhccCCC
Q 019944 270 ADLLGNFLFNG 280 (333)
Q Consensus 270 eryI~e~LFd~ 280 (333)
|+||++||||.
T Consensus 247 e~yi~~vLFd~ 257 (257)
T PRK13249 247 ESYIHNVLFDL 257 (257)
T ss_pred HHHHHhcCCCC
Confidence 99999999985
No 4
>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=100.00 E-value=7.8e-70 Score=505.04 Aligned_cols=230 Identities=21% Similarity=0.327 Sum_probs=215.2
Q ss_pred chHHHHHHHHHHhhccCCcccccchhhhhhhccCCCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCCCCCCCc
Q 019944 48 SYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPKPEFDVP 126 (333)
Q Consensus 48 ~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~p~yDLP 126 (333)
||++|+++|+..|.. .+.+|+|+|.+|+...+.+++++|+|||||++++|++|.++++ |+++|||||||||+|+||||
T Consensus 1 m~~~fl~~l~~~l~~-~~~~~~~i~~~f~~~~~~~~~~~I~n~~~q~~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLP 79 (236)
T PRK13246 1 MFDSLVDFLKTNIDE-LNGHELQISKEFKEHHNKDSKYIIKNWLFSSPEYRKWRITRLDGGKKLQVFNTVAYPNFKSELP 79 (236)
T ss_pred CchHHHHHHHHHHHH-cCCccccCchhHHHHhcCCCceEEEeehhcCchHHHHHHHHhhcCCCcEEEEEEecCCCCCCCC
Confidence 799999999999977 5999999999999888888999999999999999999999999 99999999999999999999
Q ss_pred cccccccccC-C-ceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEEecCCchh
Q 019944 127 IFCANFFTAA-S-TNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQD 204 (333)
Q Consensus 127 iFG~DlV~~~-~-~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R~~~~ee 204 (333)
|||||||+++ + +++|||||||+++ |++|+++|++.|+++.++|+++.+||++.+.|+.+||||+|||||+.+ ++
T Consensus 80 ifG~Dlv~f~~~~~~aaIlDlqPl~~---d~~y~~~y~~~L~~L~~~~~~~~~~~~r~~~e~~~~FSp~~lf~R~~~-~~ 155 (236)
T PRK13246 80 ILGADILWFGTSQKLLAILDYQPLIQ---EKKYLEKYCSSLGFIKKKYSAFDNNKMKNIYDSKKYFSPWVIICRGNK-LN 155 (236)
T ss_pred ccceeeeecCCCceEEEEEeCCCccc---chhhhHHHHHHHHHHHHhhHhhCcccCCCCcchHhhcCCceEEEecCC-cc
Confidence 9999999965 3 6789999999996 789999999999999999999999999999999999999999999774 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccCCCCCC
Q 019944 205 KHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKE 283 (333)
Q Consensus 205 ~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd~~~~ 283 (333)
+++.+.++|.+||+.||++|++++.+ +..+..++.++|++||+||||||||||||+|+||++|||+||++||||.|..
T Consensus 156 ~~~~~~~~F~~~v~~Yl~i~~~~~~~-~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~LFd~~~~ 233 (236)
T PRK13246 156 LDRDLNNIFHSFVNNYLNINKSNPVN-QFLNLEEIKINQIKYDKYSFEKDPADKLFKSFFGEKWTKKFINKFLFTLNNE 233 (236)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccC-CccCHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhcccCCCCC
Confidence 67778899999999999999999988 5557778889999999999999999999999999999999999999999654
No 5
>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-68 Score=498.36 Aligned_cols=230 Identities=23% Similarity=0.406 Sum_probs=214.0
Q ss_pred chHHHHHHHHHHhhccCCcccccchhhhhhhccCCCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCCCCCCCc
Q 019944 48 SYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPKPEFDVP 126 (333)
Q Consensus 48 ~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~p~yDLP 126 (333)
||+||+++|.+.|..+ +++|+++|++|++++|..++++|+|||||++++|++|.++++ |+++|||||||||+|+||||
T Consensus 1 m~~p~l~~l~~~I~~~-~l~~~~ip~~l~~~~~~~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lqVLn~V~fP~~~yDLP 79 (238)
T PRK13247 1 MFDPFLEELHKEIFSR-GGQSLPVPAGLEECVSEKGNAVIRSWLWQVPGFRRWRVTRLDAGDSLQVLNSVAYPDYNYDLP 79 (238)
T ss_pred CCcHHHHHHHHHHHHc-CCcccCCChhHhhhhcccCceEEEeeeecCchHHHHHHHHhhcCCCcEEEEEEecCCCCCCCC
Confidence 7999999999999886 999999999999999998899999999999999999999999 99999999999999999999
Q ss_pred cccccccccC-Cc-eEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEEecCCchh
Q 019944 127 IFCANFFTAA-ST-NIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQD 204 (333)
Q Consensus 127 iFG~DlV~~~-~~-~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R~~~~ee 204 (333)
|||||||++| ++ ++|||||||+++ +++|+++|++.|+++.++|+++.++++..+-|+.+||||+|||||+. +++
T Consensus 80 ifG~Dlv~~~~~~~laAIlDlqPl~~---~~~~~~~y~~~L~~l~~~~~~~~~~~~~~~~d~~~~FSp~~lf~R~~-~~~ 155 (238)
T PRK13247 80 LMGIDLLWFGKKQKLVAVLDFQPLVQ---DKDYLDRYFEGLKSLKERFPDLNSEETMRFYDPNQYFSPWLLFCKGG-AET 155 (238)
T ss_pred ccceeEeecCCCceEEEEEecCCCCc---chhhhHHHHHHHHHHHHhhHhhcCCCCCCCccccccCCCceEEeeCC-cHH
Confidence 9999999997 55 445999999996 78999999999999999999986665544448899999999999985 677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccCCCCC
Q 019944 205 KHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIK 282 (333)
Q Consensus 205 ~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd~~~ 282 (333)
+++.++++|.+||+.|++++++++++++..++.++.++|++||+||+|||||||||+|+||++|||+||++||||+..
T Consensus 156 ~~~~l~~af~~YL~~~~~~~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~~L~~~FG~~Wae~yi~~vLFd~~~ 233 (238)
T PRK13247 156 ATNSLPKAFSAFLKAYWQLHDNAKKITSTIEIQEVVQLQIDYDIYSAERDPAHGLFSSYFGKEWSERFLHEFLFPASV 233 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHhcCcCCCc
Confidence 888999999999999999999999998877888999999999999999999999999999999999999999999943
No 6
>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated
Probab=100.00 E-value=1e-67 Score=493.87 Aligned_cols=224 Identities=22% Similarity=0.366 Sum_probs=202.3
Q ss_pred chHHHHHHHHHHhhcc----CCcccccchhhhhhhccC--CCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCC
Q 019944 48 SYQKFVDFAVNETKRH----AVLAPSPLQEKYNTLVAM--DGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPK 120 (333)
Q Consensus 48 ~y~~fl~~l~~~l~~~----~~L~p~pl~~~l~~~~~~--~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~ 120 (333)
.|+||+++|.+.|..+ ++|+|+++|++|++++|. +.+++|+|||||++++|++|..+++ |+++|||||||||+
T Consensus 11 ~~~pli~~la~~i~~~~~~~~~l~p~~l~~~l~~~~~~~~~~~l~I~n~~~q~~~fRk~hle~~~~G~~lqVLn~V~fP~ 90 (243)
T PRK02816 11 QLHPLILQLAERIRSHWQQLLDLSPYALPPDLGYIEGKLEGEKLFIENECYQAPGFRKLHLELARLGNGLDILHCVMFPD 90 (243)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcCCCChhhcccccccCCCeeEEEEeeecccchhhhheeeeccCCCceEEEEEecCC
Confidence 4999999999999876 689999999999999986 3369999999999997777777777 99999999999999
Q ss_pred CCCCCccccccccccCC-ceEEEEecCCCCCccCcCcchHHHHhhc-hhhhhhhcccCCCCCCCCcccccccccceEEEe
Q 019944 121 PEFDVPIFCANFFTAAS-TNIVVLDLNPLHDVIHHRDYKDKYYKSL-MPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTK 198 (333)
Q Consensus 121 p~yDLPiFG~DlV~~~~-~~lailDlqPl~~~~~d~~y~~kY~~~L-~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R 198 (333)
|+|||||||||||++++ +++|||||||+++. +.+.|.++| ++| .++++++|++|+||+ ||||+|||||
T Consensus 91 ~~yDlPiFGaDlv~~~~~~slaIlDlqPl~~~-~~~~Y~~~l-~~l~~~~f~~~r~lp~wg~--------~FSp~~lf~R 160 (243)
T PRK02816 91 PRYDLPIFGADLVAGRGGISAAIVDLSPVSRT-LPDAYIKAL-SALPKPAFSQPRELPEWGD--------IFSPYCLFIR 160 (243)
T ss_pred CCCCCCccceeEeecCCceeEEEEecCccccc-chHHHHHHH-HhhcchhhhccccCCCccC--------ccCcceEEec
Confidence 99999999999999975 67999999999952 223677777 566 578899999999999 9999999999
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccC
Q 019944 199 FTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLF 278 (333)
Q Consensus 199 ~~~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LF 278 (333)
+.+.+ ++..++++|.+|++.|++++.+|+++++...++++.++|++||+||++||||||||+|+||++|||+||++|||
T Consensus 161 ~~~~~-e~~~~~~~f~~yL~~~~~~~~~a~p~~~~~~~~~~~~~Q~~Y~~~q~enDptr~vL~~~FG~~Wae~yi~~vLF 239 (243)
T PRK02816 161 PTNAE-EENQFLDRVDEYLSIHCQLAIAAQPDSDSEQIIERLAGQKNYCLQQKRNDKTRRVLEKAFGPEWADRYITTVLF 239 (243)
T ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHhcCC
Confidence 88654 45689999999999999999999999767788899999999999999999999999999999999999999999
Q ss_pred CCCC
Q 019944 279 NGIK 282 (333)
Q Consensus 279 d~~~ 282 (333)
|.|+
T Consensus 240 d~p~ 243 (243)
T PRK02816 240 DLPP 243 (243)
T ss_pred CCCC
Confidence 9986
No 7
>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1.3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....
Probab=100.00 E-value=3.4e-65 Score=473.55 Aligned_cols=222 Identities=34% Similarity=0.574 Sum_probs=195.8
Q ss_pred HHHHHHhhccCCcccccchhhhhhhccCCC--CeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCCCCCCCccccc
Q 019944 54 DFAVNETKRHAVLAPSPLQEKYNTLVAMDG--KTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPKPEFDVPIFCA 130 (333)
Q Consensus 54 ~~l~~~l~~~~~L~p~pl~~~l~~~~~~~g--~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~p~yDLPiFG~ 130 (333)
+.+.+.+..+++|+|+|+|++|+++++..| +++|+||+||++++|++|.++++ |+++|||||||||+++||||||||
T Consensus 2 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~i~n~~~q~~~fRk~r~~~~~~g~~lqVL~~V~yP~~~ydLPiFG~ 81 (228)
T PF05996_consen 2 ETIEARWSSLPDLEPYPLPEELSYIESELGGERLVIENWCYQSPKFRKLRLERADAGEGLQVLNCVIYPRPEYDLPIFGA 81 (228)
T ss_dssp HHHHHHHHHCTT-EEEEECCCCSEEEEETTCEEEEEEEEEEEETTEEEEEEEEEEETTTEEEEEEEEEE-TTS---EEEE
T ss_pred hhHHHHHHHccCCeeecCChHhhhcccccchhhHHHHhhhhcccHHHHHHHHHhhcCCCcEEEEEEEcCCCCCCCCcccc
Confidence 456777888889999999999999999866 89999999999998888888888 999999999999999999999999
Q ss_pred cccccCC--ceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEEecCCchhhhHH
Q 019944 131 NFFTAAS--TNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDA 208 (333)
Q Consensus 131 DlV~~~~--~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R~~~~ee~~~~ 208 (333)
|||++|+ +++|||||||+++ +.+|.++|++.|+++.++|.++++|++++|+|+.+||||+|||+|+. .+++++.
T Consensus 82 Dlv~~~~~~~~~ailDl~P~~~---~~~l~~~y~~~L~~l~~~~~~~~~~~~~lp~w~~~iFSp~~lf~r~~-~~~~~~~ 157 (228)
T PF05996_consen 82 DLVAFPGKRISAAILDLQPLSQ---DRDLPEKYYSKLAPLPEKYQELFPEPRKLPEWGNQIFSPWCLFIRPS-NPEEEEQ 157 (228)
T ss_dssp EEEEETTETEEEEEEEEE-SST---TSHHCHHHHHHHHTSHHH-TT--SSBTSSSGGCGSCS-TT-EEEEEE-SHHHHHH
T ss_pred eeeeeCCccEEEEEEeCCCCCC---cccchHHHHHHHHHHHHHHHhhccccccCchhHHHhCCCceEEeeCC-CHHHHHH
Confidence 9999986 4456999999986 78999999999999999999999999999999999999999999965 5567789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccCC
Q 019944 209 LYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFN 279 (333)
Q Consensus 209 l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd 279 (333)
++++|.+|++.|++++.+++++++..++++++++|++||+||++||||||||+++||++|||+||++||||
T Consensus 158 ~~~af~~yl~~~~~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL~~~FG~~wae~yi~~vLFd 228 (228)
T PF05996_consen 158 FLSAFKEYLQAYLELVEQAEPVTDPERIAERLEAQHRYCQYQAENDPTRRVLEKAFGEEWAERYINEVLFD 228 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHH-HHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhChHHHHHHHHHcCCC
Confidence 99999999999999999999998888999999999999999999999999999999999999999999997
No 8
>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.
Probab=99.89 E-value=4.8e-23 Score=192.60 Aligned_cols=216 Identities=18% Similarity=0.278 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHhhccCCcccccchhhhhhhccCCCCeEEEeccccccc---cceeeeeEE--e---cCCCceEEEEEeCC
Q 019944 49 YQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPK---IRLLRSMSI--Q---NEVMQVLDFAVFPK 120 (333)
Q Consensus 49 y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~g~~~i~~~~~qs~~---iR~~R~~hl--E---G~~lqVLn~VifP~ 120 (333)
....+..+.+.|+++ |.|.++|+++.++.+..|...-.-..+++++ |+++-..|| . |+.++|.|+.+|++
T Consensus 6 m~~l~~~~e~rL~~~--L~p~~~p~dv~~f~n~~g~a~GSl~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v~L~ 83 (255)
T PF06405_consen 6 MVDLASEVEARLGSR--LLPSTVPPDVQYFSNQDGNAEGSLHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSVFLN 83 (255)
T ss_dssp HHHHHHHHHHHTGGG--B----S-HHHHEEE-TTSSEEEEEEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhcc--cCCCCCChhHHHhcCCCCCceeEEEEecCCCCCceeEEEeeeeeecCCCCceeeeheeeeeec
Confidence 345566667777775 8999999999999998876554445666666 999987777 5 88899999999999
Q ss_pred CCCCCcccccccccc-CCceEEEEecCCCCCccCcCcchHHHHhhc--hhhhhhhcccCCCCCCCCcccccccccceEEE
Q 019944 121 PEFDVPIFCANFFTA-ASTNIVVLDLNPLHDVIHHRDYKDKYYKSL--MPLGLNYTKLLPWGGRLTSESIKFFSPIVIWT 197 (333)
Q Consensus 121 p~yDLPiFG~DlV~~-~~~~lailDlqPl~~~~~d~~y~~kY~~~L--~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~ 197 (333)
++.|.|+|++.|+.+ +...++++||-|+.++.++++|.++||++. ...+++..++| |.++|+|+. ||+
T Consensus 84 ~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~~yYe~t~ld~~R~~le~~p--------e~~pY~S~S-Lyv 154 (255)
T PF06405_consen 84 PSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLDRYYEDTQLDKHRQLLEKLP--------EFQPYVSSS-LYV 154 (255)
T ss_dssp TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHHHHTTTTTCHHHHHHHHHST--------TEEE---S--HHH
T ss_pred ccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHHHHhcccchhHHHHHHHhCc--------ccCcccCcc-hhh
Confidence 999999999999955 677689999999999999999999999975 57777777776 556677766 444
Q ss_pred ec-----------CCc--------hhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhh
Q 019944 198 KF-----------TSS--------QDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHG 258 (333)
Q Consensus 198 R~-----------~~~--------ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~ 258 (333)
|. ... +.+.+.+.+..++.++.||+-+...+...++.+.+.+.++..-..+...|.|++.
T Consensus 155 Rs~~SPTAi~~~i~~~~g~~~~leeIv~~~i~p~A~~vl~~WL~~c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~- 233 (255)
T PF06405_consen 155 RSVVSPTAILYSIDCEEGGEERLEEIVRDHIAPVAKEVLDIWLDSCADEAREVEEEERAALAKRDRMIRRKSIEVDLSS- 233 (255)
T ss_dssp HHHS-TT-EEEEEE-SS--HHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred eeccCCceEEEEecccccchhhHHHHHHhhhhHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhceeeecccc-
Confidence 42 221 2234457799999999999654444444555676888888888889999999999
Q ss_pred hHHhhhChHHHHHHHHhc
Q 019944 259 VLKKLIGETLAADLLGNF 276 (333)
Q Consensus 259 vL~r~FG~eWAeryI~e~ 276 (333)
.|.|+||+|.|||.|+.+
T Consensus 234 ~~prlFG~evadrvv~ai 251 (255)
T PF06405_consen 234 NLPRLFGQEVADRVVAAI 251 (255)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chhhhhChHHHHHHHHHH
Confidence 555999999999999864
No 9
>PLN02581 red chlorophyll catabolite reductase
Probab=99.88 E-value=4.6e-22 Score=186.51 Aligned_cols=216 Identities=16% Similarity=0.271 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhhccCCcc--cccchhhhhhhccCCCCeEEEecccc---ccccceeeeeEEe-----cCCCceEEEEEeC
Q 019944 50 QKFVDFAVNETKRHAVLA--PSPLQEKYNTLVAMDGKTELQMSSFQ---APKIRLLRSMSIQ-----NEVMQVLDFAVFP 119 (333)
Q Consensus 50 ~~fl~~l~~~l~~~~~L~--p~pl~~~l~~~~~~~g~~~i~~~~~q---s~~iR~~R~~hlE-----G~~lqVLn~VifP 119 (333)
+..+..+..++++|+++. |..+|+++.+..+..|...=.=..++ +.+|+++-..||- |+.++|.|+.+|.
T Consensus 13 r~lm~~l~~~ve~Rlg~~l~Ps~~P~dv~~f~n~~G~a~GSl~irsG~~~S~IDf~l~SWlh~~lp~ggalnItsL~~~L 92 (267)
T PLN02581 13 RELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGAQGSKIDFVLGSWLHCKLPTGGALNITSLSAFL 92 (267)
T ss_pred HHHHHHHHHHHHHHhccccCCccCchHHHHhcCCCCCceeEEEEecCCCCCceeEEeehhhcCCCCCCccccHHHHHhHh
Confidence 455677888888887554 66688999999997654211113344 4499999777773 7899999999999
Q ss_pred CCCCCCcccccccccc-CCceEEEEecCCCCCccCcCcchHHHHhhch--hhhhhhcccCCCCCCCCcccccccccceEE
Q 019944 120 KPEFDVPIFCANFFTA-ASTNIVVLDLNPLHDVIHHRDYKDKYYKSLM--PLGLNYTKLLPWGGRLTSESIKFFSPIVIW 196 (333)
Q Consensus 120 ~p~yDLPiFG~DlV~~-~~~~lailDlqPl~~~~~d~~y~~kY~~~L~--~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf 196 (333)
+|++|.|+|++.|+.. +...++++|+-|+.++.++++|.++||++.. .+++...++| ++++|||+. ||
T Consensus 93 ~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~~yYe~t~ld~~Rq~l~k~p--------e~~pY~S~S-Ly 163 (267)
T PLN02581 93 NPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLP--------QVQPYVSPS-LY 163 (267)
T ss_pred ccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHHHHhcccccHHHHHHHHhCc--------ccCcccccc-ce
Confidence 9999999999999976 5566899999999999999999999999764 6667788876 556799998 77
Q ss_pred EecCC-------------------chhhhHHHHHHHHHHHHHHHH-HHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCCh
Q 019944 197 TKFTS-------------------SQDKHDALYSAFMEYYKAWLK-LMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPG 256 (333)
Q Consensus 197 ~R~~~-------------------~ee~~~~l~~aF~~yl~~yL~-~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPa 256 (333)
+|..- .|.+.+.+.+..++.++.||+ +.+.+.+ .++.+.+.+.++..-..+...|.|++
T Consensus 164 vRs~~SPTAi~~~i~~~~~~~~~leeiv~~~i~p~a~evl~~WL~~c~~~~~~-~~e~Er~~l~kRD~~Ir~k~iE~Dl~ 242 (267)
T PLN02581 164 VRSVVSPTAILVKIDCEEGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGRE-MEEEERAYLEKRDRMIRSKSVEVDLS 242 (267)
T ss_pred eeeccCCceEEEEeecCCCccccHHHHHHhhhhHHHHHHHHHHHHHhccCCcc-CcHHHHHHHHHHHHHHHhhceeechh
Confidence 77541 233457789999999999999 6665555 55556688888888888999999999
Q ss_pred hhhHHhhhChHHHHHHHHhc
Q 019944 257 HGVLKKLIGETLAADLLGNF 276 (333)
Q Consensus 257 r~vL~r~FG~eWAeryI~e~ 276 (333)
. .|.|+||+|.|||.|+.+
T Consensus 243 ~-nlprlFGqevadRvv~ai 261 (267)
T PLN02581 243 S-NMPRLFGQEVADRVVAAI 261 (267)
T ss_pred h-hhhhHhChHHHHHHHHHH
Confidence 9 555999999999999864
No 10
>KOG1106 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.28 E-value=86 Score=28.84 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCCCccccccccccCCceEEEEecCCCCCccCcCcchHHHHhhch--hhhhhhcccCCCCCCCCcccccccccceEEEe
Q 019944 121 PEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLM--PLGLNYTKLLPWGGRLTSESIKFFSPIVIWTK 198 (333)
Q Consensus 121 p~yDLPiFG~DlV~~~~~~lailDlqPl~~~~~d~~y~~kY~~~L~--~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R 198 (333)
...+||.+-+..+..+. -+...+..-|.++....+. +..-..+.+ +.- ||+=.+.+++
T Consensus 52 ~kVelP~wl~~~L~~~~----------~~si~lP~~fs~~~rn~i~Adp~~vdL~s~---~ph-------FY~fg~kl~~ 111 (177)
T KOG1106|consen 52 RKVELPYWLAEELAINQ----------FVSILLPDIFSEKVRNVIKADPNKVDLRSL---CPH-------FYEFGMKLLP 111 (177)
T ss_pred CcccchHHHHHHHhhcc----------ceeecCchHHHHHHHHHHhcCcceeecccc---ccH-------HHHHHHHHhh
Confidence 34688888888877762 1222224456666665554 333444444 222 7788888888
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 019944 199 FTSSQDKHDALYSAFMEYYKAWLKLMDQAV 228 (333)
Q Consensus 199 ~~~~ee~~~~l~~aF~~yl~~yL~~~~~a~ 228 (333)
..+.+.....+...|...+..+++....++
T Consensus 112 l~s~~~l~~~~se~l~~R~~~~l~~~~s~~ 141 (177)
T KOG1106|consen 112 LDSGENLGIILSETLRSRVREILDSSLSAT 141 (177)
T ss_pred cccCcchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 888877777788888888888888777643
No 11
>PRK15379 pathogenicity island 1 effector protein SopD; Provisional
Probab=23.61 E-value=99 Score=30.48 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=69.6
Q ss_pred cCcchHHHHhhchhhhhhhcccCCCCCCCCccc--------ccccccceEEEecCCchhhhHHHHHHHHHHHHHHHHHHH
Q 019944 154 HRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSES--------IKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMD 225 (333)
Q Consensus 154 d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~--------~~iFSp~~Lf~R~~~~ee~~~~l~~aF~~yl~~yL~~~~ 225 (333)
+.+..+.+|+-+++--.+-..+-+|.|.+|+|. .-=|-+..-||+..=-|.+-+++++.++-.+--.|.
T Consensus 179 ~~~ik~~vy~~mr~~e~~~~~~vew~~~lte~e~~~l~cl~~g~f~~~tqf~kigy~elegev~f~m~hp~~~yll~--- 255 (317)
T PRK15379 179 NAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLH--- 255 (317)
T ss_pred ccHHHHHHHHhhCCccCCCcceeeecCcCCHHHHHHHHHhhcCCCcchhhhhhhhhhhhhhhHHHHHhhhHHHHHHh---
Confidence 667888888777777777778899999999842 235788888888776666667788887765542222
Q ss_pred HHhhcCC--hhHHHhHHHHHHHHHHHHHhhCChhhhHHhhh
Q 019944 226 QAVEETD--VSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLI 264 (333)
Q Consensus 226 ~a~~~~~--~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~F 264 (333)
.-.|..+ +....-.-.--++|+.|+..+----.+|+|.+
T Consensus 256 ~y~p~~~~~~~nt~~~~~ln~d~~dy~~nk~~id~il~~iy 296 (317)
T PRK15379 256 TYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLY 296 (317)
T ss_pred ccCcchhccccchhhHHHhccchHHHhcchhhHHHHHHHHH
Confidence 2222111 11111123345688888877666666777765
Done!