Query 019944
Match_columns 333
No_of_seqs 137 out of 176
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x9o_A 15,16- dihydrobiliverdi 100.0 6.9E-69 2.4E-73 501.4 20.5 238 41-283 2-242 (244)
2 2g18_A Phycocyanobilin:ferredo 100.0 1.1E-65 3.8E-70 481.8 19.7 218 48-281 20-252 (253)
3 3i94_A Phycocyanobilin:ferredo 100.0 7.8E-65 2.7E-69 474.8 16.8 220 49-281 17-247 (248)
4 2vcl_A Cyanobacterial phycoery 100.0 8.7E-64 3E-68 462.8 12.5 205 48-280 23-232 (233)
5 3agc_A RED chlorophyll catabol 100.0 5.5E-41 1.9E-45 316.0 14.0 218 49-276 19-269 (276)
6 3i94_A Phycocyanobilin:ferredo 15.9 1.7E+02 0.0056 26.8 4.9 33 206-238 169-201 (248)
7 2rdc_A Uncharacterized protein 12.8 4.4E+02 0.015 22.4 6.2 28 257-284 103-130 (153)
8 3ssc_A ECOKMCRBC, 5-methylcyto 11.2 71 0.0024 27.9 0.9 45 266-319 5-49 (170)
9 2oo2_A Hypothetical protein AF 10.7 4.8E+02 0.017 20.0 5.4 71 212-282 6-78 (86)
10 3l91_A Acyl-homoserine lactone 9.8 1.9E+02 0.0067 24.7 3.2 40 240-279 37-86 (170)
No 1
>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}
Probab=100.00 E-value=6.9e-69 Score=501.39 Aligned_cols=238 Identities=21% Similarity=0.369 Sum_probs=215.2
Q ss_pred eeeccccchHHHHHHHHHHhhccCCcccccchhhhhhhccCCCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeC
Q 019944 41 LLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFP 119 (333)
Q Consensus 41 ~~~~~~~~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP 119 (333)
+|.+++|+|+||+++|.+.|.++ +|+|+++|++|+++++++++++|+|||||++++|++|.++++ |+++|||||||||
T Consensus 2 ~~~~~~~~~~p~l~~l~~~i~~~-~l~p~~~~~~l~~~~~~~~~~~i~n~~y~~~~fRk~r~~~~~~g~~lqVLh~V~fP 80 (244)
T 2x9o_A 2 PLGSPEFIFDSFLNELHSDITKR-GGSPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWRVTRLDAGDSLQVFNSVAYP 80 (244)
T ss_dssp -----CHHHHHHHHHHHHHHHHT-TCEEECCCTTSSEEECTTTCCEEEEEEEECTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CcCcchhhhhHHHHHHHHHHHHc-CCccCCCChHhhhhhcCCCceEEEEEEecCchHhHHHHHHhccCCCcEEEEEEecc
Confidence 46789999999999999999997 999999999999999988899999999999999999999999 9999999999999
Q ss_pred CCCCCCccccccccccCC-ceE-EEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEE
Q 019944 120 KPEFDVPIFCANFFTAAS-TNI-VVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWT 197 (333)
Q Consensus 120 ~p~yDLPiFG~DlV~~~~-~~l-ailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~ 197 (333)
+|+|||||||||||++++ +.| |||||||+++ |++|+++|+++|+++.++|.++.++++..+.|+.+||||+||||
T Consensus 81 ~~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~~---d~~y~~~Y~~~L~~l~~~~~~~~~~~~~~~~e~~~~FSp~~lf~ 157 (244)
T 2x9o_A 81 DYNYDHPLMGVDLLWFGARQKLVAVLDFQPLVQ---DKDYLDRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFC 157 (244)
T ss_dssp CTTCCCCEEEEEEEEEGGGTEEEEEEEEECSCC---CHHHHHHHCHHHHHHHHHCTTC--CCCCSSSCTTSSCCTTCEEE
T ss_pred CCCCCCCeehhheeccCCCceEEEEEEcCCCCC---hhhchHHHHHHHHHHHHHHHhhcCccCCChhhhHhhcCCceEEE
Confidence 999999999999999975 445 5999999996 67999999999999999999988777655558999999999999
Q ss_pred ecCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhcc
Q 019944 198 KFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFL 277 (333)
Q Consensus 198 R~~~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~L 277 (333)
|+. ++++++.+++||.+||++|++++++|+++++..+++++.++|++||+||+|||||||||+|+||++|||+||++||
T Consensus 158 R~~-~~~~~~~~~~af~~yL~~~l~~~~~a~p~~~~~~~~~i~~~Q~~Y~~~qaenDpar~vl~~~FG~ewae~yi~~~L 236 (244)
T 2x9o_A 158 RGG-AEQADLSLPKAFSAFLKAYWDLHDNAKSIPSTIPPEEVKNLQDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFL 236 (244)
T ss_dssp EEC-HHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHCHHHHHHHHHHTT
T ss_pred eCC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHcCHHHHHHHHHHcC
Confidence 965 6777889999999999999999999999977667788999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019944 278 FNGIKE 283 (333)
Q Consensus 278 Fd~~~~ 283 (333)
||+.++
T Consensus 237 Fd~~~~ 242 (244)
T 2x9o_A 237 FPASSS 242 (244)
T ss_dssp STTCC-
T ss_pred cCCCcC
Confidence 999765
No 2
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=100.00 E-value=1.1e-65 Score=481.82 Aligned_cols=218 Identities=21% Similarity=0.379 Sum_probs=198.0
Q ss_pred chHHHHHHHHHHhhcc----CCcccccchhhhhhhccC--CCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCC
Q 019944 48 SYQKFVDFAVNETKRH----AVLAPSPLQEKYNTLVAM--DGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPK 120 (333)
Q Consensus 48 ~y~~fl~~l~~~l~~~----~~L~p~pl~~~l~~~~~~--~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~ 120 (333)
.|+||+++|.+.|..+ ++|+|+++|++|+++++. +++++|+|||||++++|++|..+++ |+++|||||||||+
T Consensus 20 ~~~p~l~~l~~~i~~~~~~~~~l~p~~lp~~l~~~~~~~~~~~l~i~n~~yq~~~fRk~r~e~~~~G~~lqVLn~V~fP~ 99 (253)
T 2g18_A 20 QQHPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLEGEKLTIENRCYQTPQFRKMHLELAKVGNMLDILHCVMFPR 99 (253)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSCCEECCCCGGGSEEEEEETTEEEEEEEEEEECSSEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHhccCCCeeccCchHHhhhhcccCCCceEEEEeeeecchhhhhHHhhhhcCCCcEEEEEEEcCC
Confidence 5999999999999987 899999999999999994 4469999999999998888888888 99999999999999
Q ss_pred CCCCCccccccccccCC-ceEEEEecCCCCCccCcCcchHHHHhhchhh----hhhhcccCCCCCCCCcccccccccceE
Q 019944 121 PEFDVPIFCANFFTAAS-TNIVVLDLNPLHDVIHHRDYKDKYYKSLMPL----GLNYTKLLPWGGRLTSESIKFFSPIVI 195 (333)
Q Consensus 121 p~yDLPiFG~DlV~~~~-~~lailDlqPl~~~~~d~~y~~kY~~~L~~l----~~~~r~lppWG~~~~~e~~~iFSp~~L 195 (333)
++|||||||||||++++ +++|||||||+++ |.+|.++|.+.|.++ +.++|++|+||+ ||||+||
T Consensus 100 ~~yDLPiFG~Dlv~~~~~~~l~ilDlqPl~~---d~~~~~~Y~~~L~~L~~~~f~~~r~lp~wg~--------iFSp~~l 168 (253)
T 2g18_A 100 PEYDLPMFGCDLVGGRGQISAAIADLSPVHL---DRTLPESYNSALTSLNTLNFSQPRELPEWGN--------IFSDFCI 168 (253)
T ss_dssp TTSCCCEEEEEEEEETTEEEEEEEEEECSST---TCCCCHHHHHHHHHSCCCCCSSBCCCCTTGG--------GSCTTCE
T ss_pred CCCCCCeeeeeeeccCCceEEEEEECCCCCC---cccchHHHHHHHHhhccccccccccCCchhh--------hcCcceE
Confidence 99999999999999986 7789999999996 789999999999766 578999999997 9999999
Q ss_pred EEecCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc---CChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHH
Q 019944 196 WTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEE---TDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADL 272 (333)
Q Consensus 196 f~R~~~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~---~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAery 272 (333)
|+|+.+.+|+ ++|.+|+++||+++++++.. .+...++++.++|++||+||++||||||||+|+||++|||+|
T Consensus 169 f~Rp~~~ee~-----~aF~~~~~~yL~~~~~~~~~a~~~~~~~~~~i~~~Q~~Y~~~qaenDpar~vL~~~FG~ewae~y 243 (253)
T 2g18_A 169 FVRPSSPEEE-----AMFLGRVREFLQVHCQGAIAASPVSAEQKQQILAGQHNYCSKQQQNDKTRRVLEKAFGVDWAENY 243 (253)
T ss_dssp EECCCSHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCHHHHHHH
T ss_pred EeccCchHHH-----HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHhCcHHHHHHHHcCHHHHHHH
Confidence 9999988776 69999999999999765432 234566788999999999999999999999999999999999
Q ss_pred HHhccCCCC
Q 019944 273 LGNFLFNGI 281 (333)
Q Consensus 273 I~e~LFd~~ 281 (333)
|++||||.|
T Consensus 244 i~~~LFd~p 252 (253)
T 2g18_A 244 MTTVLFDLP 252 (253)
T ss_dssp HHHTTSCCC
T ss_pred HHhcCCCCC
Confidence 999999998
No 3
>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*
Probab=100.00 E-value=7.8e-65 Score=474.80 Aligned_cols=220 Identities=20% Similarity=0.361 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHhhcc---CCcccccchhhhhhhccC--CCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCCCC
Q 019944 49 YQKFVDFAVNETKRH---AVLAPSPLQEKYNTLVAM--DGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPKPE 122 (333)
Q Consensus 49 y~~fl~~l~~~l~~~---~~L~p~pl~~~l~~~~~~--~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~p~ 122 (333)
.+|++..|.+.+.++ ++|+|+|||++|++++|. +++++|+|||||++++|++|.++++ |+++|||||||||+++
T Consensus 17 ~~pli~~La~~i~~~~~~~~l~p~~ip~~l~~~~~~~~~~~~~i~n~~yq~~~fRk~r~~~~~~G~~lqVLn~V~fP~~~ 96 (248)
T 3i94_A 17 LNPMIQQLALAIAASWQSLPLKPYQLPEDLGYVEGRLEGEKLVIENRCYQTPQFRKMHLELAKVGKGLDILHCVMFPEPL 96 (248)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCEECCCGGGCCCEEECSSSCCEEEEEEEEECSSEEEEEEEEEEETTTEEEEEEEEEECGG
T ss_pred cChHHHHHHHHHHHHHhcCCCeecCCchhhhhhhcccCCCccEEEEEeecCchHHHHHHHHhhcCCCcEEEEEEEccCCC
Confidence 445555555555433 899999999999999994 6689999999999999999999999 9999999999999999
Q ss_pred CCCccccccccccCC-ceEEEEecCCCCCccCcCcchHHHHhhchhhh----hhhcccCCCCCCCCcccccccccceEEE
Q 019944 123 FDVPIFCANFFTAAS-TNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLG----LNYTKLLPWGGRLTSESIKFFSPIVIWT 197 (333)
Q Consensus 123 yDLPiFG~DlV~~~~-~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~----~~~r~lppWG~~~~~e~~~iFSp~~Lf~ 197 (333)
|||||||||||++++ +++|||||||+++ |++|.++|.+.|.++. .+++++||||. ||||+||||
T Consensus 97 yDLPiFG~Dlv~~~~~~~lailDlqPl~~---d~~y~~~Y~~~l~~l~~~~f~~~r~l~~wg~--------iFSp~~lf~ 165 (248)
T 3i94_A 97 YGLPLFGCDIVAGPGGVSAAIADLSPTQS---DRQLPAAYQKSLAELGQPEFEQQRELPPWGE--------IFSEYCLFI 165 (248)
T ss_dssp GTCCEEEEEEEEETTEEEEEEEEEECCST---TSCCCHHHHHHHHHTCCCCCSSBCCCCGGGG--------GSCTTCEEE
T ss_pred CCCCccceeEeccCCceEEEEEECCCCCC---cccchHHHHHHHHHhchhhhcCcccCCchhh--------hCCCceEEe
Confidence 999999999999987 4579999999996 7899999999997654 89999999986 999999999
Q ss_pred ecCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhcc
Q 019944 198 KFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFL 277 (333)
Q Consensus 198 R~~~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~L 277 (333)
|+.+ +++++.+.++|.+|+++|++++.+|+++++++. .+++++|++||+||+|||||||||+|+||++|||+||++||
T Consensus 166 Rp~~-~ee~~~f~~~~~~Yl~~~~~~~~~a~p~~~~~~-~~~~~~Q~~Y~~~qaenDpar~vL~~~FG~eWae~yi~~~L 243 (248)
T 3i94_A 166 RPSN-VTEEERFVQRVVDFLQIHCHQSIVAEPLSEAQT-LEHRQGQIHYCQQQQKNDKTRRVLEKAFGEAWAERYMSQVL 243 (248)
T ss_dssp CCCS-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhH-HHHHHHHHHHHHHHHHhCcHHHHHHHHhChHHHHHHHHHhC
Confidence 9775 556688999999999999999999999887654 58999999999999999999999999999999999999999
Q ss_pred CCCC
Q 019944 278 FNGI 281 (333)
Q Consensus 278 Fd~~ 281 (333)
||..
T Consensus 244 Fd~~ 247 (248)
T 3i94_A 244 FDVI 247 (248)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9974
No 4
>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*
Probab=100.00 E-value=8.7e-64 Score=462.81 Aligned_cols=205 Identities=20% Similarity=0.311 Sum_probs=185.9
Q ss_pred chHHHHHHHHHHhhccCCcccccchhhhhhhccC--CCCeEEEeccccccccceeeeeEEecCCCceEEEEEeCCCCCCC
Q 019944 48 SYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAM--DGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDV 125 (333)
Q Consensus 48 ~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~--~g~~~i~~~~~qs~~iR~~R~~hlEG~~lqVLn~VifP~p~yDL 125 (333)
+|++|+++|++.+. +|+|+++|++|++++|. +++++|+|||||++++|++|.++++|+++|||||||||+|+|||
T Consensus 23 ~~~p~i~~l~~~i~---~L~p~~l~~~l~~~e~~~~~~~~~i~n~~y~s~~fRK~r~~~~~g~~lqVLn~V~fP~~~yDL 99 (233)
T 2vcl_A 23 IWQNYIDALFETFP---QLEISEVWAKWDGGNVTKDGGDAKLTANIRTGEHFLKAREAHIVDPNSDIYNTILYPKTGADL 99 (233)
T ss_dssp TTHHHHHHHHHHCT---TCEEEEEEEEEEECC-----CCEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEECBSSCC
T ss_pred HHHHHHHHHHHhcc---CCcccCCchHhcccccccCCCceEEEehhhcCcHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Confidence 39999999999983 99999999999999885 67899999999999998888888889999999999999999999
Q ss_pred ccccccccccCC-ceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCc--ccccccccceEEEecCCc
Q 019944 126 PIFCANFFTAAS-TNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTS--ESIKFFSPIVIWTKFTSS 202 (333)
Q Consensus 126 PiFG~DlV~~~~-~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~--e~~~iFSp~~Lf~R~~~~ 202 (333)
||||||||++++ +++|||||||++ ++|++.|.++ |||+++|+ |..+||||+ ||+|+.+.
T Consensus 100 PiFG~Dlv~~~~~~~lailDlqPl~---------~~Y~~~L~~L--------p~~~~lp~fye~~~~FSp~-lf~Rp~~~ 161 (233)
T 2vcl_A 100 PCFGMDLMKFSDKKVIIVFDFQHPR---------EKYLFSVDGL--------PEDDGKYRFFEMGNHFSKN-IFVRYCKP 161 (233)
T ss_dssp CEEEEEEEEEETTEEEEEEEEECSS---------TTCCCCCTTS--------CCCCSSSCCSCTTSSCCTT-CEEEEECG
T ss_pred CccceeeeccCCceEEEEEeCCccH---------HHHHHHHhcC--------CCCCCCCCccchhhccCCC-eEEeeCCH
Confidence 999999999986 666799999999 4788777776 67888888 888999999 99999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccCCC
Q 019944 203 QDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNG 280 (333)
Q Consensus 203 ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd~ 280 (333)
+|++..+ +||.+|+++|++++.+|++++ ++.++|++||+||++||||||||+|+||++|||+||++||||.
T Consensus 162 ~e~~~~l-~af~~YL~~y~~~~~~a~p~~------~i~~~Q~~Y~~~q~enDpar~vL~~~FG~eWae~yi~~~LFd~ 232 (233)
T 2vcl_A 162 DEVDQYL-DTFKLYLTKYKEMIDNNKPVG------EDTTVYSDFDTYMTELDPVRGYMKNKFGEGRSEAFVNDFLFSY 232 (233)
T ss_dssp GGGGGGH-HHHHHHHHHHHHHHHHHCCCB------CCGGGGHHHHHHHHHC--CCHHHHHHHCHHHHHHHHHHTTTTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHHhCcHHHHHHHHcCHHHHHHHHHHcCcCC
Confidence 9998888 999999999999999999887 4466999999999999999999999999999999999999985
No 5
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=100.00 E-value=5.5e-41 Score=316.00 Aligned_cols=218 Identities=16% Similarity=0.229 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHhhccCCccccc--chhhhhhhccCCCCeEEEecccccc---ccceeeeeEE----e-cCCCceEEEEEe
Q 019944 49 YQKFVDFAVNETKRHAVLAPSP--LQEKYNTLVAMDGKTELQMSSFQAP---KIRLLRSMSI----Q-NEVMQVLDFAVF 118 (333)
Q Consensus 49 y~~fl~~l~~~l~~~~~L~p~p--l~~~l~~~~~~~g~~~i~~~~~qs~---~iR~~R~~hl----E-G~~lqVLn~Vif 118 (333)
=+.|+.++..++..|++..++| +|+++++..+..|+..-.=..++++ +++.+=..|+ . |+++||+|+|+|
T Consensus 19 ~r~lm~~L~~~ie~rl~~~llP~~~P~d~~~~~~~~G~a~gsl~~~sg~~~s~id~~i~SWl~~~l~~G~al~I~nlv~y 98 (276)
T 3agc_A 19 RKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGF 98 (276)
T ss_dssp HHHHHHHHHHHHHHHTTTTBCCCCCCHHHHEEECTTSSEEEEEEEEEBCTTCSEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCccCCcCCChhHhhhcCcCCcccceeeeccCCCCCCcceeehhhhcCcccCccceeheeeeee
Confidence 4789999999999999999999 9999999999766432222233322 5555544444 3 889999999999
Q ss_pred CCCCCCCccccccccccCC-ceEEEEecCCCCCccCcCcchHHHHhhc--hhhhhhhcccCCCCCCCCcccccccccceE
Q 019944 119 PKPEFDVPIFCANFFTAAS-TNIVVLDLNPLHDVIHHRDYKDKYYKSL--MPLGLNYTKLLPWGGRLTSESIKFFSPIVI 195 (333)
Q Consensus 119 P~p~yDLPiFG~DlV~~~~-~~lailDlqPl~~~~~d~~y~~kY~~~L--~~l~~~~r~lppWG~~~~~e~~~iFSp~~L 195 (333)
|++++|+|+||+||++++. ..++||||||+.++.+|++|+++||+++ ..+++++.++| |++|||||+ |
T Consensus 99 l~~~~D~Phfgidli~~g~~~ll~vLDl~PRkdLv~~~dYL~rYye~~~l~~lr~~~~~l~--------d~~pYfS~s-L 169 (276)
T 3agc_A 99 LNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLP--------EVNPYVSPS-L 169 (276)
T ss_dssp ECTTCCCCCEEEEEEESSSSEEEEEEECCCSSCTTTCHHHHHHHTTSSSHHHHHHHHHTST--------TEEECCCSC-H
T ss_pred cCcccCCchhhHHHHhcCCCceEEEEecCCccccccCHHHHHHHhcccccHHHHHHHHhCc--------ccccccChh-H
Confidence 9999999999999999965 5567999999888889999999999998 78999999987 678899999 9
Q ss_pred EEec---------------CCc--hhhhHHHHHHHHHHHHHHHHHHHHHhhc---CChhHHHhHHHHHHHHHHHHHhhCC
Q 019944 196 WTKF---------------TSS--QDKHDALYSAFMEYYKAWLKLMDQAVEE---TDVSQIMCNCEAQHRYLTWRAEKDP 255 (333)
Q Consensus 196 f~R~---------------~~~--ee~~~~l~~aF~~yl~~yL~~~~~a~~~---~~~~~~~~~~~~Q~~Y~~~qaenDP 255 (333)
|+|. ... |.+++.+.++|++|++.||+++++++++ .++.+.+++.++|+.|++|.+|+||
T Consensus 170 f~R~~~Spta~~~~~~~~~g~~l~eiv~~~l~p~~~e~L~~wl~~~~~~~~~~~~~~e~e~~~l~~rd~~~r~~saE~Dp 249 (276)
T 3agc_A 170 FVRSAVSPTASMLKIDAEEEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSIEDDL 249 (276)
T ss_dssp HHHHHSCTTCEEEEEECSSHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhccCchhheeeccccccchHHHHHHHhhHHHHHHHHHHHHHHhhccCCccCCCChhHHHHHHHHHHHHHhhhcccCc
Confidence 9994 122 5567899999999999999999999987 7887889999999999999999999
Q ss_pred hhhhHHhhhChHHHHHHHHhc
Q 019944 256 GHGVLKKLIGETLAADLLGNF 276 (333)
Q Consensus 256 ar~vL~r~FG~eWAeryI~e~ 276 (333)
+++|+ |+||+|||||+|+++
T Consensus 250 a~~l~-r~FG~E~sdr~l~~~ 269 (276)
T 3agc_A 250 DLQFP-RMFGEEVSSRVVHAI 269 (276)
T ss_dssp TTTHH-HHHCHHHHHHHHHHH
T ss_pred hhchH-hhhCHHHHHHHHHHH
Confidence 99999 999999999999986
No 6
>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*
Probab=15.90 E-value=1.7e+02 Score=26.83 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 019944 206 HDALYSAFMEYYKAWLKLMDQAVEETDVSQIMC 238 (333)
Q Consensus 206 ~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~ 238 (333)
...-..+|.++++.||+++++.+...++.....
T Consensus 169 ~~ee~~~f~~~~~~Yl~~~~~~~~~a~p~~~~~ 201 (248)
T 3i94_A 169 NVTEEERFVQRVVDFLQIHCHQSIVAEPLSEAQ 201 (248)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Confidence 455679999999999999999988777655333
No 7
>2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Probab=12.77 E-value=4.4e+02 Score=22.38 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=23.7
Q ss_pred hhhHHhhhChHHHHHHHHhccCCCCCCc
Q 019944 257 HGVLKKLIGETLAADLLGNFLFNGIKEL 284 (333)
Q Consensus 257 r~vL~r~FG~eWAeryI~e~LFd~~~~l 284 (333)
.||..|-+|++.++..+..-.|+.|..+
T Consensus 103 NR~~~ke~ge~~~e~~~qGnifp~p~a~ 130 (153)
T 2rdc_A 103 NRYIVKEYGEELKEAGIEGGIFPKPEAN 130 (153)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTSCCCCSS
T ss_pred HHHHHHHhhHHHHHhhccCCCCCCchhH
Confidence 4688899999999988888888888765
No 8
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=11.21 E-value=71 Score=27.94 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=31.1
Q ss_pred hHHHHHHHHhccCCCCCCccccccccCCCcccCCCCeeeccccccccccccCCC
Q 019944 266 ETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPW 319 (333)
Q Consensus 266 ~eWAeryI~e~LFd~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (333)
.+|-++|+....= -.+|+||++.+++++|+- |.|+.=-.+..-||
T Consensus 5 ~~~l~~F~~qa~~--~~~L~Tk~y~~~~~~~~V-------k~S~GqGn~A~IPW 49 (170)
T 3ssc_A 5 QPWIEKFIKQAQQ--QRSQSTKDYPTSYRNLRV-------KLSFGYGNFTSIPW 49 (170)
T ss_dssp HHHHHHHHHHHHH--TCCCCCSSSCSEETTEEE-------EEEEESSSEEEEEE
T ss_pred HHHHHHHHHHhcc--cCCccchhhHhhcCCeEE-------EEeccCCccccCcE
Confidence 3566777777662 389999999999999753 44444445566666
No 9
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=10.66 E-value=4.8e+02 Score=20.02 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-hhHHHhHHHHHHH-HHHHHHhhCChhhhHHhhhChHHHHHHHHhccCCCCC
Q 019944 212 AFMEYYKAWLKLMDQAVEETD-VSQIMCNCEAQHR-YLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIK 282 (333)
Q Consensus 212 aF~~yl~~yL~~~~~a~~~~~-~~~~~~~~~~Q~~-Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd~~~ 282 (333)
.-.+-++.|++++.++-.... ..++.++...... =..+....|+-+.+..=.+|..|=|.-++-=||+.+.
T Consensus 6 ~L~Eki~kYi~~l~eaL~~i~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwLDAg~rlGl~~v~~ 78 (86)
T 2oo2_A 6 ELRRETLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLEIGLEVGKLHETA 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence 346788999999999865332 3233333211111 1136778999999999999999999999888888654
No 10
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=9.81 E-value=1.9e+02 Score=24.74 Aligned_cols=40 Identities=10% Similarity=-0.018 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhCChhhhHHhhhChH----------HHHHHHHhccCC
Q 019944 240 CEAQHRYLTWRAEKDPGHGVLKKLIGET----------LAADLLGNFLFN 279 (333)
Q Consensus 240 ~~~Q~~Y~~~qaenDPar~vL~r~FG~e----------WAeryI~e~LFd 279 (333)
..+|.+.|+-...+=-++|=|..+||++ -+|++++.+-+.
T Consensus 37 a~AqDRl~qm~~~r~~a~G~lse~~G~~~~~~~~~~~l~~D~~~R~l~~~ 86 (170)
T 3l91_A 37 AYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQP 86 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHCTTCBCTTSCBHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHcchhHHHhCCCcccccccchhhhhHHHHHcCCH
Confidence 3455566655555555777788888886 577777766554
Done!