Query 019944
Match_columns 333
No_of_seqs 137 out of 176
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 09:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019944.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019944hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gg2g_ a.137.3.1 (G:) Transdu 11.5 77 0.0056 20.7 2.8 20 236-255 23-42 (54)
2 d1yz1a1 b.88.1.2 (A:1-172) Tra 11.2 1.9E+02 0.014 23.0 5.7 39 211-249 86-124 (172)
3 d1h6qa_ b.88.1.2 (A:) Translat 9.9 2.5E+02 0.018 22.2 6.0 29 211-239 82-110 (168)
4 d4fiva_ b.50.1.1 (A:) Feline i 8.9 1.3E+02 0.0094 22.3 3.6 38 98-135 63-106 (113)
5 d2j7ja3 g.37.1.1 (A:58-85) Tra 8.7 32 0.0023 19.8 -0.2 13 262-275 11-23 (28)
6 d1txja_ b.88.1.2 (A:) Translat 8.5 2.8E+02 0.02 21.9 5.7 29 211-239 85-113 (171)
7 d1hcia1 a.7.1.1 (A:272-396) al 8.4 1.7E+02 0.013 21.5 4.2 44 206-249 8-58 (125)
8 d2bdea1 c.108.1.23 (A:2-459) C 7.5 2.6E+02 0.019 25.5 5.8 33 237-269 374-406 (458)
9 d1wfra_ d.106.1.1 (A:) Hypothe 7.1 69 0.0051 24.5 1.2 14 262-275 9-22 (143)
10 d2e9xc1 a.278.1.3 (C:1088-1192 5.8 3.2E+02 0.023 19.4 4.4 61 155-228 3-67 (105)
No 1
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.50 E-value=77 Score=20.74 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHhhCC
Q 019944 236 IMCNCEAQHRYLTWRAEKDP 255 (333)
Q Consensus 236 ~~~~~~~Q~~Y~~~qaenDP 255 (333)
+....+.-..||.+.+++||
T Consensus 23 vS~aa~~l~~y~e~~~~~Dp 42 (54)
T d1gg2g_ 23 VSKAAADLMAYCEAHAKEDP 42 (54)
T ss_dssp HHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHHHHHHHHHHhcCcCCC
Confidence 34456667899999999998
No 2
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.16 E-value=1.9e+02 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHH
Q 019944 211 SAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTW 249 (333)
Q Consensus 211 ~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~ 249 (333)
..|+.|++.|++.+.+.-.+..++++.....+-..|.++
T Consensus 86 k~y~~yiK~YmK~v~~~L~e~~~e~v~~F~~~a~~~vK~ 124 (172)
T d1yz1a1 86 EAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKH 124 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhHHHHHH
Confidence 379999999998776655444555555443333333333
No 3
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=9.87 E-value=2.5e+02 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHhH
Q 019944 211 SAFMEYYKAWLKLMDQAVEETDVSQIMCN 239 (333)
Q Consensus 211 ~aF~~yl~~yL~~~~~a~~~~~~~~~~~~ 239 (333)
.+|..|++.|++.+.+.-.+..++++...
T Consensus 82 k~y~~yiK~YmK~vk~~L~e~~perv~~F 110 (168)
T d1h6qa_ 82 KSYMSYIKGYMKAIKARLQESNPERVPVF 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 48999999999977766555555555443
No 4
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}
Probab=8.89 E-value=1.3e+02 Score=22.30 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=27.7
Q ss_pred ceeeeeEEe--cC----CCceEEEEEeCCCCCCCcccccccccc
Q 019944 98 RLLRSMSIQ--NE----VMQVLDFAVFPKPEFDVPIFCANFFTA 135 (333)
Q Consensus 98 R~~R~~hlE--G~----~lqVLn~VifP~p~yDLPiFG~DlV~~ 135 (333)
++.+..+++ ++ ..-+.+..+.|......+++|=|+++-
T Consensus 63 ~~~~~v~i~~~~~~~~gtvl~g~~pvlp~~~~p~nllGRd~Ltq 106 (113)
T d4fiva_ 63 TNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIK 106 (113)
T ss_dssp EEEEEEEEEECCTTSCCCEEEEEEEEETTCCCSSCEECHHHHHH
T ss_pred eEEceEEEEEcCCeEeEEEEEccccccCCCCCcCCEEChhhhHH
Confidence 455666665 32 244567788898888899999999875
No 5
>d2j7ja3 g.37.1.1 (A:58-85) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=8.66 E-value=32 Score=19.85 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.5
Q ss_pred hhhChHHHHHHHHh
Q 019944 262 KLIGETLAADLLGN 275 (333)
Q Consensus 262 r~FG~eWAeryI~e 275 (333)
.+-|+.|++ ||..
T Consensus 11 ~fvgktwt~-y~kh 23 (28)
T d2j7ja3 11 SFVGKTWTL-YLKH 23 (28)
T ss_dssp CCEESSHHH-HHHH
T ss_pred cccchhHHH-HHHH
Confidence 356899998 7654
No 6
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]}
Probab=8.45 E-value=2.8e+02 Score=21.91 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHhH
Q 019944 211 SAFMEYYKAWLKLMDQAVEETDVSQIMCN 239 (333)
Q Consensus 211 ~aF~~yl~~yL~~~~~a~~~~~~~~~~~~ 239 (333)
.+|..|++.|++.+...-.+..++++..-
T Consensus 85 k~y~~yiK~YmK~v~~~L~e~~perV~~F 113 (171)
T d1txja_ 85 KEYSVYIKNYMQKILKYLEEKKPDRVDVF 113 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 47999999999877655444445454443
No 7
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.44 E-value=1.7e+02 Score=21.47 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC-------hhHHHhHHHHHHHHHHH
Q 019944 206 HDALYSAFMEYYKAWLKLMDQAVEETD-------VSQIMCNCEAQHRYLTW 249 (333)
Q Consensus 206 ~~~l~~aF~~yl~~yL~~~~~a~~~~~-------~~~~~~~~~~Q~~Y~~~ 249 (333)
.+.+...|.......++|+.++....+ -.++...+.....|++.
T Consensus 8 ~e~l~~eY~~~As~Ll~Wi~~~~~~L~dr~f~~t~~~iq~~l~~f~~yr~~ 58 (125)
T d1hcia1 8 NERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRK 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCCSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 346788999999999999999986432 23445566666666665
No 8
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=7.53 E-value=2.6e+02 Score=25.46 Aligned_cols=33 Identities=6% Similarity=-0.187 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHhhCChhhhHHhhhChHHH
Q 019944 237 MCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLA 269 (333)
Q Consensus 237 ~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWA 269 (333)
.++.+.|..-...+++..+.+......||+.|=
T Consensus 374 ~e~~~l~~~~~~~~~~~~~~~~~~~~~fn~~~G 406 (458)
T d2bdea1 374 QEIHDLQLQISTVDLQISRLLQEQNSFYNPKWE 406 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 345555666668888888899999999997663
No 9
>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401) {Thermus thermophilus [TaxId: 274]}
Probab=7.13 E-value=69 Score=24.49 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.9
Q ss_pred hhhChHHHHHHHHh
Q 019944 262 KLIGETLAADLLGN 275 (333)
Q Consensus 262 r~FG~eWAeryI~e 275 (333)
++|.+||++.|.+.
T Consensus 9 ~~~S~EW~~~~~~~ 22 (143)
T d1wfra_ 9 ELFTEAWAQAYCRK 22 (143)
T ss_dssp CCSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH
Confidence 68999999999853
No 10
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.79 E-value=3.2e+02 Score=19.39 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=33.4
Q ss_pred CcchHHHHhhchh--hhhhhcccCCCCCCCCcccccccccceEEEecCCch--hhhHHHHHHHHHHHHHHHHHHHHHh
Q 019944 155 RDYKDKYYKSLMP--LGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQ--DKHDALYSAFMEYYKAWLKLMDQAV 228 (333)
Q Consensus 155 ~~y~~kY~~~L~~--l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R~~~~e--e~~~~l~~aF~~yl~~yL~~~~~a~ 228 (333)
+-|.++|.+.|.+ ..-..+.+-|. ||.=.+.++.....+ +..+.|..+|.. .|.++++.+.
T Consensus 3 ~~f~~~v~~alkADp~~VdL~~~~p~----------fY~lg~~l~~l~~~e~~~l~~~L~~tf~~---R~~~I~d~a~ 67 (105)
T d2e9xc1 3 KIYQEGWRTVFSADPNVVDLHKMGPH----------FYGFGSQLLHFDSPENADISQSLLQTFIG---RFRRIMDSSQ 67 (105)
T ss_dssp GGGSHHHHHHHHHCGGGSCTTTSCSS----------HHHHHHHGGGGCCTTHHHHHHHHHHHHHH---HHHHHHHHHT
T ss_pred hhHhHHHHHHHhcCCCeechhhcCcH----------HHHHHHHHHHHcccchHHHHHHHHHHHHH---HHHHHHHHhc
Confidence 4567777776653 22333333222 555555555554322 456667777775 5677776664
Done!