Query 019946
Match_columns 333
No_of_seqs 175 out of 1974
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.5E-53 8.6E-58 374.7 22.6 271 37-330 4-281 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.3E-52 7.8E-57 369.4 20.7 260 42-332 3-271 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1E-35 3.4E-40 262.8 11.7 185 38-232 102-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.4E-34 1.2E-38 252.4 14.6 181 39-229 111-296 (297)
5 2acm_A Mucin-1; auto-catalytic 28.2 12 0.0004 23.0 -0.1 20 300-319 40-59 (66)
6 3vjj_A P9-1; 3.00A {Rice black 24.3 36 0.0012 28.2 2.0 26 79-104 71-97 (368)
7 1yro_A Alpha-lactalbumin; Arg2 15.2 81 0.0028 22.7 2.0 22 300-322 86-107 (123)
8 1iiz_A Lysozyme; hydrolase; 2. 14.3 83 0.0028 22.6 1.9 23 300-323 85-107 (120)
9 2fbd_A Lysozyme 1; digestive l 14.3 88 0.003 22.5 2.0 18 300-317 87-104 (122)
10 3tgu_G UQCRQ, mitochondrial ub 14.1 1.4E+02 0.0046 19.7 2.7 32 203-234 39-70 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.5e-53 Score=374.70 Aligned_cols=271 Identities=33% Similarity=0.537 Sum_probs=230.3
Q ss_pred CcchHHHHHHHhHHHHHHHhhcccHHHHHHHHHhCCCC-----CCCCCCHHHHHHHHHHhcCcccccccchhhhhhcccc
Q 019946 37 LLSVTKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPH-----SIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPN 111 (333)
Q Consensus 37 ~~~~~~~~~ag~~a~~~~~~~~~Pld~ik~~~q~~~~~-----~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 111 (333)
..+.+..+++|++||+++.++++|+|++|+|+|++... ...|++..+++++|+++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 34567899999999999999999999999999997532 2368899999999999999999999999999999999
Q ss_pred hhhhHHhHHHHHHHHHHHHhhhccccccCcchHHHHHHHHHHHHHHHhhhchHHHHHHHHhhcCCCC--CCCcCcHHHHH
Q 019946 112 SAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKS--PRQYRGIFHAL 189 (333)
Q Consensus 112 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~--~~~~~~~~~~~ 189 (333)
.+++|.+||.+++.++.... .+..........+++|++||+++.++++|+|+||+|+|++.... ..+|+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999443332210 01111123467889999999999999999999999999985422 35789999999
Q ss_pred HHHHHhcCccccccchhHHHhhhhhhhhhHHHHHHHHHHHHHhhccCCCCCCCCCccHHHHHHHHHHHHHhHhhhcccHH
Q 019946 190 TTVLREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLD 269 (333)
Q Consensus 190 ~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d 269 (333)
++|+++||++|||||+.+++++.++..+++|.+||.+++.+.+. ........+++|+++|++++++++|+|
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---------~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------KNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 99999999999999999999999999999999999999966432 133567788999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccccCCCCcccccCCCcHHHHHHHHHHhhCccccccccccchhhhh
Q 019946 270 VIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVS 330 (333)
Q Consensus 270 vv~~r~q~~~~~~~~~~~~~~~~~~~~~~y~s~~~~~~~i~~~eG~~g~y~G~~~~~~~~~ 330 (333)
+||+|||.+.... .....|+++++|+++|+++||++|||||+.|+++|..
T Consensus 232 vvktr~q~~~~~~-----------~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~ 281 (297)
T 1okc_A 232 TVRRRMMMQSGRK-----------GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM 281 (297)
T ss_dssp HHHHHHHTTTTCC-----------GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-----------CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhc
Confidence 9999999875321 1235799999999999999999999999999999953
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-52 Score=369.40 Aligned_cols=260 Identities=25% Similarity=0.378 Sum_probs=229.7
Q ss_pred HHHHHHhHHHHHHHhhcccHHHHHHHHHhCCCC--------CCCCCCHHHHHHHHHHhcCcccccccchhhhhhcccchh
Q 019946 42 KSLVAGGVAGGVSRTAVAPLERLKILLQVQNPH--------SIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSA 113 (333)
Q Consensus 42 ~~~~ag~~a~~~~~~~~~Pld~ik~~~q~~~~~--------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 113 (333)
.++++|++||+++.++++|+|++|+|+|++... ...|++.++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998652 246899999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHhhhccccccCcchHHHHHHHHHHHHHHHhhhchHHHHHHHHhhcCCC-CCCCcCcHHHHHHHH
Q 019946 114 VKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK-SPRQYRGIFHALTTV 192 (333)
Q Consensus 114 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~-~~~~~~~~~~~~~~i 192 (333)
++|.+||.+ ++.+... . ...+....+++|++||+++.++++|+|+||+|+|++... ...+|+++++++++|
T Consensus 83 i~f~~ye~~-k~~~~~~-----~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSV-KQFYTKG-----S--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHH-HHHHSCC-----C--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhcC-----C--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 999999999 5443211 0 135678899999999999999999999999999998643 235799999999999
Q ss_pred HHhcCccccccchhHHHhhhhhhhhhHHHHHHHHHHHHHhhccCCCCCCCCCccHHHHHHHHHHHHHhHhhhcccHHHHH
Q 019946 193 LREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIR 272 (333)
Q Consensus 193 ~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~dvv~ 272 (333)
+++||++|||||+.+++++.++..+++|.+||.+++.+.+.. ....+....+++|++||++++++++|+|+||
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvk 227 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVK 227 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999999875431 1134567889999999999999999999999
Q ss_pred HHHhhcCCCCCcccccCCCCcccccCCCcHHHHHHHHHHhhCccccccccccchhhhhhc
Q 019946 273 RRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVSVI 332 (333)
Q Consensus 273 ~r~q~~~~~~~~~~~~~~~~~~~~~~y~s~~~~~~~i~~~eG~~g~y~G~~~~~~~~~~~ 332 (333)
+|||.+.. ..|+++++|+++|+++||++|||||+.|+++|.+|.
T Consensus 228 trlq~~~~----------------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~ 271 (303)
T 2lck_A 228 TRYMNSAL----------------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271 (303)
T ss_dssp HHHTTCCS----------------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHH
T ss_pred HHHHhccc----------------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhH
Confidence 99999752 258999999999999999999999999999998763
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1e-35 Score=262.79 Aligned_cols=185 Identities=28% Similarity=0.441 Sum_probs=165.0
Q ss_pred cchHHHHHHHhHHHHHHHhhcccHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHHhcCcccccccchhhhhhcccchhhh
Q 019946 38 LSVTKSLVAGGVAGGVSRTAVAPLERLKILLQVQNP--HSIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVK 115 (333)
Q Consensus 38 ~~~~~~~~ag~~a~~~~~~~~~Pld~ik~~~q~~~~--~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 115 (333)
.+.+..+++|++||+++.++++|+|++|+|+|++.. ....|.+..+++++|+++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999864 234689999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhhccccccCcchHHHHHHHHHHHHHHHhhhchHHHHHHHHhhcCCCCCCCcCcHHHHHHHHHHh
Q 019946 116 FFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALTTVLRE 195 (333)
Q Consensus 116 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~i~~~ 195 (333)
|.+||.+ ++.+... ..........+++|++||++++++++|+|+||+|+|++.. ..|+++++|+++|+++
T Consensus 182 f~~ye~~-k~~l~~~------~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~ 251 (303)
T 2lck_A 182 LVTYDLI-KDTLLKA------NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRK 251 (303)
T ss_dssp HHHHHHH-HHTTTTT------TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHS
T ss_pred HHHHHHH-HHHHHhc------cCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHH
Confidence 9999999 4443221 1123456778999999999999999999999999999764 4699999999999999
Q ss_pred cCccccccchhHHHhhhhhhhhhHHHHHHHHHHHHHh
Q 019946 196 EGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIK 232 (333)
Q Consensus 196 ~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 232 (333)
||++|||||+.+++++.+|..+++|.+||.+++++.+
T Consensus 252 eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 252 EGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987643
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.4e-34 Score=252.40 Aligned_cols=181 Identities=25% Similarity=0.419 Sum_probs=156.4
Q ss_pred chHHHHHHHhHHHHHHHhhcccHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHhcCcccccccchhhhhhcccchhhh
Q 019946 39 SVTKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPH---SIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVK 115 (333)
Q Consensus 39 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~~~q~~~~~---~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 115 (333)
+....+++|++||+++.++++|+|++|+|+|++... ...|.+..+++++|+++||++|||||+.+++++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 457789999999999999999999999999997532 24688999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhhccccccCcchHHHHHHHHHHHHHHHhhhchHHHHHHHHhhcCCCC--CCCcCcHHHHHHHHH
Q 019946 116 FFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKS--PRQYRGIFHALTTVL 193 (333)
Q Consensus 116 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~--~~~~~~~~~~~~~i~ 193 (333)
|.+||.+ ++.+.. ....+....+++|++|+++++++++|+|+||+|+|++.... ...|+++++|+++|+
T Consensus 191 f~~ye~~-k~~~~~--------~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~ 261 (297)
T 1okc_A 191 FGVYDTA-KGMLPD--------PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIA 261 (297)
T ss_dssp HHHHHHH-HHSSCG--------GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHH
T ss_pred HHHHHHH-HHHhcc--------CCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Confidence 9999999 443321 12345677889999999999999999999999999875432 246999999999999
Q ss_pred HhcCccccccchhHHHhhhhhhhhhHHHHHHHHHHH
Q 019946 194 REEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDW 229 (333)
Q Consensus 194 ~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~ 229 (333)
++||++|||||+.+++++. +..+++|.+||.++++
T Consensus 262 ~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 262 KDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999999996 5789999999998875
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=28.21 E-value=12 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHhhCccccc
Q 019946 300 NGMVDAFRKTVRHEGFGALY 319 (333)
Q Consensus 300 ~s~~~~~~~i~~~eG~~g~y 319 (333)
+++.+.+.+||+++|+.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999999886
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=24.26 E-value=36 Score=28.24 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHhcCc-ccccccchhh
Q 019946 79 NGTIQGLKYIWKSEGF-RGLFKGNGTN 104 (333)
Q Consensus 79 ~~~~~~~~~i~~~~G~-~glyrG~~~~ 104 (333)
.++++.+..++.-.-+ ..-|+|+-..
T Consensus 71 DGIf~Lln~Li~Gt~fekt~y~Gf~Ys 97 (368)
T 3vjj_A 71 DGIFELLNYLIDGTNFDKTCYCGFNYS 97 (368)
T ss_dssp ETHHHHHHHHHHTCCGGGSTTCSSCCC
T ss_pred chHHHHHHHHhcCccccceeecccccc
Confidence 4788888888776555 5567776543
No 7
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=15.21 E-value=81 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=16.1
Q ss_pred CcHHHHHHHHHHhhCcccccccc
Q 019946 300 NGMVDAFRKTVRHEGFGALYKGL 322 (333)
Q Consensus 300 ~s~~~~~~~i~~~eG~~g~y~G~ 322 (333)
+.-..|+++|++++|+.+ |.|+
T Consensus 86 ~~~i~CAk~I~~~~G~~a-W~~w 107 (123)
T 1yro_A 86 DDDIACAKKILAIKGIDY-WKAY 107 (123)
T ss_dssp HHHHHHHHHHHHHTCGGG-STTH
T ss_pred HHHHHHHHHHHHhcCcch-hHHH
Confidence 445889999999988653 4444
No 8
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=14.33 E-value=83 Score=22.57 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHhhCccccccccc
Q 019946 300 NGMVDAFRKTVRHEGFGALYKGLV 323 (333)
Q Consensus 300 ~s~~~~~~~i~~~eG~~g~y~G~~ 323 (333)
+.-..|+++|++++|+.+ |.|+.
T Consensus 85 ~~~v~CAk~I~~~~G~~a-W~~w~ 107 (120)
T 1iiz_A 85 TVASTCAKKIYKRTKFDA-WSGWD 107 (120)
T ss_dssp HHHHHHHHHHHHHHTTTT-CHHHH
T ss_pred HHHHHHHHHHHHhcCcch-HHHHH
Confidence 456889999999988653 44443
No 9
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=14.25 E-value=88 Score=22.49 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.7
Q ss_pred CcHHHHHHHHHHhhCccc
Q 019946 300 NGMVDAFRKTVRHEGFGA 317 (333)
Q Consensus 300 ~s~~~~~~~i~~~eG~~g 317 (333)
+.-..|+++|++++|+.+
T Consensus 87 ~~~i~CAk~I~~~~G~~a 104 (122)
T 2fbd_A 87 SNSVTCARKIKSQQGWTA 104 (122)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 456889999999988654
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=14.06 E-value=1.4e+02 Score=19.75 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=24.6
Q ss_pred cchhHHHhhhhhhhhhHHHHHHHHHHHHHhhc
Q 019946 203 KGWLPSVIGVIPYVGLNFAVYESLKDWLIKSK 234 (333)
Q Consensus 203 ~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 234 (333)
|-+..+++..+|...+.+.+|+..++......
T Consensus 39 RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 39 RRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677888899999999999988776654
Done!