Query 019947
Match_columns 333
No_of_seqs 290 out of 1097
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 8.6E-19 2.9E-23 138.0 6.6 62 258-319 7-68 (83)
2 1x2n_A Homeobox protein pknox1 99.7 2.9E-18 9.8E-23 131.2 7.7 66 258-323 7-72 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.2E-18 1.1E-22 129.8 6.8 60 262-321 2-61 (67)
4 1du6_A PBX1, homeobox protein 99.7 6.1E-18 2.1E-22 126.1 6.8 62 258-319 3-64 (64)
5 1le8_B Mating-type protein alp 99.7 1E-17 3.6E-22 131.5 8.5 63 259-321 3-65 (83)
6 2lk2_A Homeobox protein TGIF1; 99.7 3.1E-18 1E-22 137.5 4.7 57 263-319 10-66 (89)
7 1k61_A Mating-type protein alp 99.7 1.3E-17 4.5E-22 122.8 7.5 59 261-319 1-59 (60)
8 1puf_B PRE-B-cell leukemia tra 99.7 1.8E-17 6E-22 126.8 7.7 65 259-323 2-66 (73)
9 1mnm_C Protein (MAT alpha-2 tr 99.7 4.4E-17 1.5E-21 128.8 7.5 61 258-318 27-87 (87)
10 1b72_B Protein (PBX1); homeodo 99.7 3.4E-17 1.2E-21 129.0 6.8 63 259-321 2-64 (87)
11 2cra_A Homeobox protein HOX-B1 99.6 2.1E-15 7E-20 114.5 8.0 64 258-324 7-70 (70)
12 2ecc_A Homeobox and leucine zi 99.6 1.5E-15 5E-20 118.7 6.9 58 260-320 5-62 (76)
13 2dmu_A Homeobox protein goosec 99.6 2E-15 6.7E-20 114.5 7.4 63 258-323 7-69 (70)
14 1akh_A Protein (mating-type pr 99.6 1.6E-15 5.4E-20 111.8 6.5 57 258-317 5-61 (61)
15 2djn_A Homeobox protein DLX-5; 99.6 1.8E-15 6.2E-20 114.8 6.8 64 258-324 7-70 (70)
16 2e1o_A Homeobox protein PRH; D 99.6 2.3E-15 7.9E-20 114.2 6.9 63 258-323 7-69 (70)
17 2da2_A Alpha-fetoprotein enhan 99.6 4.3E-15 1.5E-19 112.4 7.8 63 258-323 7-69 (70)
18 2da3_A Alpha-fetoprotein enhan 99.6 3.7E-15 1.3E-19 115.2 7.2 63 258-323 17-79 (80)
19 2hdd_A Protein (engrailed home 99.6 3.9E-15 1.3E-19 110.0 7.0 60 257-319 2-61 (61)
20 2dmt_A Homeobox protein BARH-l 99.6 5.6E-15 1.9E-19 114.9 8.1 63 258-323 17-79 (80)
21 1bw5_A ISL-1HD, insulin gene e 99.6 5.2E-15 1.8E-19 110.9 7.5 60 258-320 3-62 (66)
22 2da1_A Alpha-fetoprotein enhan 99.5 6.3E-15 2.2E-19 111.5 6.8 63 258-323 7-69 (70)
23 2da4_A Hypothetical protein DK 99.5 2.9E-15 9.9E-20 116.4 4.5 64 258-321 8-72 (80)
24 1ig7_A Homeotic protein MSX-1; 99.5 9.9E-15 3.4E-19 106.5 6.7 57 259-318 1-57 (58)
25 2h1k_A IPF-1, pancreatic and d 99.5 1.2E-14 4E-19 108.2 6.8 59 258-319 3-61 (63)
26 1jgg_A Segmentation protein EV 99.5 1.3E-14 4.3E-19 106.9 6.8 58 259-319 2-59 (60)
27 2l7z_A Homeobox protein HOX-A1 99.5 2.1E-14 7.3E-19 109.9 7.8 62 258-322 7-68 (73)
28 1fjl_A Paired protein; DNA-bin 99.5 5.2E-15 1.8E-19 115.2 4.1 61 258-321 18-78 (81)
29 2vi6_A Homeobox protein nanog; 99.5 2E-14 6.8E-19 106.5 7.1 59 258-319 3-61 (62)
30 1ahd_P Antennapedia protein mu 99.5 1.3E-14 4.3E-19 109.8 5.9 62 258-322 2-63 (68)
31 2k40_A Homeobox expressed in E 99.5 1.9E-14 6.3E-19 108.2 6.8 60 259-321 2-61 (67)
32 3rkq_A Homeobox protein NKX-2. 99.5 1.7E-14 5.7E-19 104.7 6.1 57 258-317 2-58 (58)
33 2dmq_A LIM/homeobox protein LH 99.5 2.6E-14 9E-19 110.7 6.6 59 258-319 7-65 (80)
34 1ftt_A TTF-1 HD, thyroid trans 99.5 3.2E-14 1.1E-18 107.4 6.8 61 258-321 2-62 (68)
35 2dn0_A Zinc fingers and homeob 99.5 4.8E-14 1.6E-18 108.7 7.5 61 259-322 9-69 (76)
36 1wh5_A ZF-HD homeobox family p 99.5 3.5E-14 1.2E-18 111.1 6.9 62 258-319 17-79 (80)
37 2dms_A Homeobox protein OTX2; 99.5 5.3E-14 1.8E-18 109.3 7.4 61 258-321 7-67 (80)
38 3a02_A Homeobox protein arista 99.5 5.2E-14 1.8E-18 103.6 6.7 56 262-320 3-58 (60)
39 1nk2_P Homeobox protein VND; h 99.5 5.2E-14 1.8E-18 108.7 6.6 59 258-319 9-67 (77)
40 1zq3_P PRD-4, homeotic bicoid 99.5 4E-14 1.4E-18 106.9 5.7 60 258-320 2-61 (68)
41 1yz8_P Pituitary homeobox 2; D 99.5 1.7E-14 5.9E-19 108.8 3.3 61 258-321 3-63 (68)
42 2cue_A Paired box protein PAX6 99.5 5E-14 1.7E-18 109.5 5.7 59 258-319 7-65 (80)
43 2kt0_A Nanog, homeobox protein 99.5 9.5E-14 3.3E-18 108.5 7.1 60 258-320 22-81 (84)
44 1puf_A HOX-1.7, homeobox prote 99.5 9.5E-14 3.3E-18 107.2 6.8 59 258-319 13-71 (77)
45 1b8i_A Ultrabithorax, protein 99.5 1.1E-13 3.7E-18 108.1 7.1 60 258-320 20-79 (81)
46 2ly9_A Zinc fingers and homeob 99.5 2E-13 6.9E-18 104.2 8.4 63 259-324 7-69 (74)
47 2m0c_A Homeobox protein arista 99.4 1.4E-13 4.7E-18 105.0 7.3 61 258-321 9-69 (75)
48 2da5_A Zinc fingers and homeob 99.4 1.5E-13 5.1E-18 105.9 7.5 59 260-321 9-67 (75)
49 3a03_A T-cell leukemia homeobo 99.4 1E-13 3.4E-18 101.0 6.1 54 263-319 2-55 (56)
50 2hi3_A Homeodomain-only protei 99.4 8.8E-14 3E-18 106.4 5.7 61 259-321 3-63 (73)
51 1uhs_A HOP, homeodomain only p 99.4 1.3E-13 4.3E-18 105.1 6.0 60 260-321 3-62 (72)
52 3a01_A Homeodomain-containing 99.4 1.4E-13 4.7E-18 110.4 6.1 60 258-320 17-76 (93)
53 2d5v_A Hepatocyte nuclear fact 99.4 2.6E-13 8.8E-18 118.4 7.4 64 256-322 95-158 (164)
54 2r5y_A Homeotic protein sex co 99.4 2.2E-13 7.6E-18 107.6 6.3 60 258-320 28-87 (88)
55 2cuf_A FLJ21616 protein; homeo 99.4 1.8E-13 6.1E-18 109.7 5.7 59 258-319 7-80 (95)
56 2ecb_A Zinc fingers and homeob 99.4 3.8E-13 1.3E-17 107.8 7.3 54 263-319 16-69 (89)
57 3d1n_I POU domain, class 6, tr 99.4 3.3E-13 1.1E-17 116.6 7.1 58 258-318 93-150 (151)
58 3nau_A Zinc fingers and homeob 99.4 2.2E-13 7.7E-18 103.7 5.3 53 264-319 10-62 (66)
59 3nar_A ZHX1, zinc fingers and 99.4 5E-13 1.7E-17 107.4 7.4 60 258-320 25-84 (96)
60 2cqx_A LAG1 longevity assuranc 99.4 3.3E-13 1.1E-17 103.6 5.6 61 260-323 10-71 (72)
61 1b72_A Protein (homeobox prote 99.4 3.3E-13 1.1E-17 108.6 5.8 59 258-319 34-92 (97)
62 2dmp_A Zinc fingers and homeob 99.4 9.9E-13 3.4E-17 104.6 8.2 57 262-321 17-73 (89)
63 2e19_A Transcription factor 8; 99.4 7.5E-13 2.6E-17 99.5 7.1 58 261-321 6-63 (64)
64 1wh7_A ZF-HD homeobox family p 99.4 5.6E-13 1.9E-17 104.5 5.6 61 258-319 17-79 (80)
65 1x2m_A LAG1 longevity assuranc 99.4 1.1E-12 3.7E-17 99.2 6.5 56 267-324 9-64 (64)
66 1e3o_C Octamer-binding transcr 99.3 1.2E-12 3.9E-17 114.4 7.5 60 258-320 101-160 (160)
67 2xsd_C POU domain, class 3, tr 99.3 1.2E-12 4.1E-17 115.1 7.1 64 257-323 98-161 (164)
68 1wi3_A DNA-binding protein SAT 99.3 2.7E-12 9.2E-17 98.4 7.7 65 257-323 6-70 (71)
69 1au7_A Protein PIT-1, GHF-1; c 99.3 1.9E-12 6.4E-17 111.7 7.7 59 258-319 87-145 (146)
70 2l9r_A Homeobox protein NKX-3. 99.3 3.2E-12 1.1E-16 97.7 7.2 56 264-322 10-65 (69)
71 1lfb_A Liver transcription fac 99.3 2.6E-12 8.9E-17 104.6 6.2 62 257-321 8-90 (99)
72 2da6_A Hepatocyte nuclear fact 99.2 5.7E-12 1.9E-16 103.4 5.9 59 258-319 6-85 (102)
73 3l1p_A POU domain, class 5, tr 99.2 3.6E-12 1.2E-16 110.8 4.6 59 258-319 96-154 (155)
74 1mh3_A Maltose binding-A1 home 99.1 8.7E-11 3E-15 112.3 5.7 54 261-317 368-421 (421)
75 2h8r_A Hepatocyte nuclear fact 99.1 1.2E-10 4.2E-15 107.1 6.4 57 258-317 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 99.1 6.2E-11 2.1E-15 107.1 3.9 58 258-318 115-193 (194)
77 2da7_A Zinc finger homeobox pr 99.0 5.6E-10 1.9E-14 85.9 6.9 49 267-318 14-62 (71)
78 2nzz_A Penetratin conjugated G 96.6 0.00038 1.3E-08 47.1 0.1 17 303-319 1-17 (37)
79 2ys9_A Homeobox and leucine zi 95.3 0.011 3.7E-07 45.3 3.2 45 265-312 13-57 (70)
80 1hlv_A CENP-B, major centromer 75.2 7.1 0.00024 31.0 6.5 49 261-315 4-52 (131)
81 2glo_A Brinker CG9653-PA; prot 71.8 6.2 0.00021 27.5 4.8 48 262-313 3-50 (59)
82 2o8x_A Probable RNA polymerase 60.2 6.4 0.00022 27.5 2.9 50 263-320 14-63 (70)
83 1tc3_C Protein (TC3 transposas 59.5 20 0.0007 22.4 5.2 42 263-312 4-45 (51)
84 3hug_A RNA polymerase sigma fa 59.1 5.6 0.00019 30.0 2.6 47 264-318 37-83 (92)
85 2elh_A CG11849-PA, LD40883P; s 58.3 25 0.00084 26.3 6.2 46 261-314 19-64 (87)
86 2p7v_B Sigma-70, RNA polymeras 50.7 13 0.00045 26.2 3.3 53 264-320 5-57 (68)
87 3mzy_A RNA polymerase sigma-H 49.7 9.3 0.00032 30.4 2.6 47 264-319 109-155 (164)
88 1ku3_A Sigma factor SIGA; heli 48.0 14 0.00047 26.5 3.1 52 264-319 10-62 (73)
89 2jqq_A Conserved oligomeric go 47.6 22 0.00075 32.0 4.8 38 140-179 83-120 (204)
90 1tty_A Sigma-A, RNA polymerase 47.5 15 0.00052 27.4 3.4 53 264-320 18-70 (87)
91 3c57_A Two component transcrip 47.4 24 0.00084 26.8 4.6 49 264-321 27-75 (95)
92 1iuf_A Centromere ABP1 protein 47.1 35 0.0012 28.0 5.8 53 259-314 6-62 (144)
93 2rnj_A Response regulator prot 45.7 35 0.0012 25.4 5.2 48 264-320 29-76 (91)
94 1x3u_A Transcriptional regulat 43.3 18 0.00061 25.8 3.1 47 265-320 17-63 (79)
95 3swk_A Vimentin; cytoskeleton, 43.0 74 0.0025 24.5 6.7 48 131-178 20-76 (86)
96 2k27_A Paired box protein PAX- 42.5 82 0.0028 25.5 7.5 61 262-325 81-148 (159)
97 3lsg_A Two-component response 41.6 45 0.0015 25.1 5.3 41 269-312 3-43 (103)
98 1fse_A GERE; helix-turn-helix 40.7 24 0.00083 24.6 3.4 50 262-320 9-58 (74)
99 1s7o_A Hypothetical UPF0122 pr 40.1 20 0.0007 28.6 3.2 47 264-318 22-68 (113)
100 1je8_A Nitrate/nitrite respons 39.9 20 0.00069 26.5 3.0 48 264-320 21-68 (82)
101 1or7_A Sigma-24, RNA polymeras 39.4 16 0.00054 30.2 2.5 48 264-319 140-187 (194)
102 1p4w_A RCSB; solution structur 38.5 46 0.0016 25.9 5.0 49 262-319 32-80 (99)
103 1rp3_A RNA polymerase sigma fa 37.8 18 0.0006 30.7 2.6 48 264-319 187-234 (239)
104 3bd1_A CRO protein; transcript 37.7 18 0.00062 26.0 2.4 23 291-313 14-36 (79)
105 2xi8_A Putative transcription 37.7 16 0.00056 24.6 2.0 22 292-313 18-39 (66)
106 2r1j_L Repressor protein C2; p 37.4 17 0.00057 24.7 2.0 23 291-313 21-43 (68)
107 2q1z_A RPOE, ECF SIGE; ECF sig 36.5 11 0.00038 30.9 1.1 48 264-319 135-182 (184)
108 1zug_A Phage 434 CRO protein; 36.2 17 0.00059 24.9 2.0 22 292-313 20-41 (71)
109 2rn7_A IS629 ORFA; helix, all 34.2 79 0.0027 24.0 5.7 52 262-314 4-56 (108)
110 2jpc_A SSRB; DNA binding prote 34.0 31 0.0011 23.3 3.0 29 292-320 17-45 (61)
111 2jn6_A Protein CGL2762, transp 34.0 51 0.0017 24.6 4.5 46 263-314 4-49 (97)
112 3bs3_A Putative DNA-binding pr 33.4 21 0.00073 24.9 2.1 22 292-313 27-48 (76)
113 1adr_A P22 C2 repressor; trans 33.1 21 0.00072 24.8 2.0 23 291-313 21-43 (76)
114 1xsv_A Hypothetical UPF0122 pr 32.3 24 0.00083 28.0 2.4 47 264-318 25-71 (113)
115 1jko_C HIN recombinase, DNA-in 32.1 54 0.0019 20.7 3.8 42 263-312 4-45 (52)
116 2b5a_A C.BCLI; helix-turn-heli 32.1 23 0.00078 24.8 2.0 22 292-313 27-48 (77)
117 1b72_A Protein (homeobox prote 32.0 9.4 0.00032 29.6 -0.1 25 297-321 2-26 (97)
118 1r69_A Repressor protein CI; g 31.9 23 0.00078 24.1 2.0 23 291-313 17-39 (69)
119 1hlv_A CENP-B, major centromer 31.2 65 0.0022 25.1 4.9 58 258-316 66-130 (131)
120 2wiu_B HTH-type transcriptiona 30.5 32 0.0011 24.7 2.7 22 292-313 29-50 (88)
121 3b7h_A Prophage LP1 protein 11 30.3 25 0.00086 24.6 2.0 22 292-313 24-45 (78)
122 3omt_A Uncharacterized protein 29.6 24 0.00082 24.7 1.8 21 292-312 25-45 (73)
123 1y7y_A C.AHDI; helix-turn-heli 29.3 27 0.00093 24.1 2.0 21 292-312 30-50 (74)
124 2a6c_A Helix-turn-helix motif; 28.6 30 0.001 25.1 2.3 22 292-313 35-56 (83)
125 1u78_A TC3 transposase, transp 28.1 82 0.0028 24.4 5.0 51 262-319 58-111 (141)
126 3kz3_A Repressor protein CI; f 28.1 25 0.00087 25.2 1.7 22 292-313 29-50 (80)
127 2kpj_A SOS-response transcript 25.8 33 0.0011 25.5 2.0 22 292-313 26-47 (94)
128 1rzs_A Antirepressor, regulato 25.6 34 0.0012 24.0 2.0 18 292-309 14-31 (61)
129 2ict_A Antitoxin HIGA; helix-t 25.2 36 0.0012 25.1 2.1 23 291-313 24-46 (94)
130 2ef8_A C.ECOT38IS, putative tr 25.0 36 0.0012 24.1 2.1 22 292-313 27-48 (84)
131 3mn2_A Probable ARAC family tr 24.9 1.2E+02 0.0041 22.8 5.3 40 269-312 3-42 (108)
132 2k9q_A Uncharacterized protein 24.8 33 0.0011 24.3 1.8 22 292-313 19-40 (77)
133 3clo_A Transcriptional regulat 24.4 62 0.0021 28.7 3.9 49 263-320 196-244 (258)
134 1xc0_A Pardaxin P-4, PA4; BEND 24.0 73 0.0025 20.2 3.0 22 73-94 5-26 (33)
135 3ol1_A Vimentin; structural ge 23.3 2.2E+02 0.0076 22.9 6.8 47 132-178 41-96 (119)
136 1l0o_C Sigma factor; bergerat 23.2 17 0.00059 30.7 0.0 46 264-317 198-243 (243)
137 1lmb_3 Protein (lambda repress 22.7 38 0.0013 24.7 1.9 21 292-312 34-54 (92)
138 3f6w_A XRE-family like protein 22.7 38 0.0013 24.1 1.9 22 292-313 31-52 (83)
139 3t72_q RNA polymerase sigma fa 22.7 63 0.0021 25.2 3.2 53 264-320 19-71 (99)
140 2lv7_A Calcium-binding protein 22.3 2.1E+02 0.007 21.6 6.2 51 260-310 25-79 (100)
141 1neq_A DNA-binding protein NER 22.2 43 0.0015 24.6 2.0 20 292-311 26-45 (74)
142 2w9j_A Signal recognition part 21.8 48 0.0016 26.0 2.3 23 130-152 63-85 (91)
143 3oio_A Transcriptional regulat 21.6 1.2E+02 0.0043 22.9 4.8 39 269-311 8-46 (113)
144 2l49_A C protein; P2 bacteriop 21.4 46 0.0016 24.5 2.1 22 292-313 21-42 (99)
145 1e8o_B SRP14, signal recogniti 21.0 47 0.0016 26.7 2.2 19 130-148 71-89 (106)
146 2x48_A CAG38821; archeal virus 20.2 53 0.0018 21.8 2.1 21 291-311 34-54 (55)
147 3t76_A VANU, transcriptional r 20.1 49 0.0017 25.1 2.0 21 292-312 41-61 (88)
148 1x57_A Endothelial differentia 20.0 51 0.0017 24.1 2.1 22 292-313 30-51 (91)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-19 Score=137.99 Aligned_cols=62 Identities=42% Similarity=0.778 Sum_probs=59.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|+.|++.++.+|+.||..|..+|||+.++|..||..|||+..||.+||+|+|+|.|+.
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 56778899999999999999999999999999999999999999999999999999999865
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.9e-18 Score=131.15 Aligned_cols=66 Identities=42% Similarity=0.855 Sum_probs=61.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+++++.|++.++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|++....
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 456778999999999999999999999999999999999999999999999999999999986543
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.2e-18 Score=129.75 Aligned_cols=60 Identities=43% Similarity=0.841 Sum_probs=53.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
.++||++++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++.-
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 468999999999999999999999999999999999999999999999999999998754
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=6.1e-18 Score=126.11 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=58.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+++++.|++.++.+|+.||..|..+|||+.+++..||..+||+..||.+||+|+|+|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45677899999999999999999999999999999999999999999999999999999874
No 5
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.72 E-value=1e-17 Score=131.53 Aligned_cols=63 Identities=21% Similarity=0.437 Sum_probs=57.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++++.+|+..++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 445566999999999999999999999999999999999999999999999999999998754
No 6
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=137.54 Aligned_cols=57 Identities=39% Similarity=0.680 Sum_probs=54.8
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.-||++++.+|++||.+|..+||||+++|..||..|||+.+||+|||+|+|+|.|++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 469999999999999999999999999999999999999999999999999999864
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=122.81 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=56.4
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
|+++|++.++.+|+.||..|.++|||+..++..||..+||+..||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999999999999999999999999999999999999999999874
No 8
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=1.8e-17 Score=126.78 Aligned_cols=65 Identities=31% Similarity=0.580 Sum_probs=60.8
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
+|+++.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 56788999999999999999999999999999999999999999999999999999999876543
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=4.4e-17 Score=128.78 Aligned_cols=61 Identities=23% Similarity=0.516 Sum_probs=57.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
++++++.|++.++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 5566779999999999999999999999999999999999999999999999999999873
No 10
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=3.4e-17 Score=128.98 Aligned_cols=63 Identities=32% Similarity=0.613 Sum_probs=58.7
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
+|+|+.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 567889999999999999999999999999999999999999999999999999999998643
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.1e-15 Score=114.49 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=59.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 324 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~s 324 (333)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~G 70 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSSG 70 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCCC
Confidence 4567789999999999999999 899999999999999999999999999999999999887653
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.5e-15 Score=118.69 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=54.6
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.++++|+++++.+|+.||.. +|||+..++..||..|||+..||.+||+|+|.|.|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 46778999999999999999 89999999999999999999999999999999998764
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=114.47 Aligned_cols=63 Identities=21% Similarity=0.413 Sum_probs=59.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 4667789999999999999999 89999999999999999999999999999999999988765
No 14
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.59 E-value=1.6e-15 Score=111.81 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=48.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
.+|+++.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4566789999999999999999 79999999999999999999999999999999875
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=114.79 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=59.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 324 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~s 324 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ssg 70 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSSG 70 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCCC
Confidence 4567789999999999999988 899999999999999999999999999999999999887653
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.3e-15 Score=114.22 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=59.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+++|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 4567789999999999999998 89999999999999999999999999999999999988765
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=112.44 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=58.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 4567789999999999999999 89999999999999999999999999999999999987654
No 18
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=115.24 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=59.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...++
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 5667789999999999999999 79999999999999999999999999999999999988765
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.57 E-value=3.9e-15 Score=109.98 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=53.0
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 35677889999999999999999 8999999999999999999999999999999998873
No 20
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.6e-15 Score=114.94 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=59.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 4566789999999999999999 89999999999999999999999999999999999988765
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.56 E-value=5.2e-15 Score=110.90 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=56.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4677889999999999999999 89999999999999999999999999999999998864
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=111.53 Aligned_cols=63 Identities=27% Similarity=0.471 Sum_probs=58.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSS 69 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcccC
Confidence 4567789999999999999999 89999999999999999999999999999999999876543
No 23
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=116.43 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=57.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSH-AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H-~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|+|..|+.+++.+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|+|.++...
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 45677789999999999999985 44499999999999999999999999999999999998644
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=9.9e-15 Score=106.50 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=53.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 466789999999999999998 899999999999999999999999999999999875
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.53 E-value=1.2e-14 Score=108.19 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=54.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 5677889999999999999998 8999999999999999999999999999999999874
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.53 E-value=1.3e-14 Score=106.89 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=54.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
+|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 466789999999999999999 8999999999999999999999999999999998863
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.52 E-value=2.1e-14 Score=109.93 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=57.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s 322 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4567789999999999999999 8999999999999999999999999999999999987553
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.52 E-value=5.2e-15 Score=115.24 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=56.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|+...
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 5567789999999999999998 899999999999999999999999999999999987543
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.52 E-value=2e-14 Score=106.48 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=52.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4567789999999999999998 8999999999999999999999999999999999873
No 30
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.51 E-value=1.3e-14 Score=109.79 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=57.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s 322 (333)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5678889999999999999998 8999999999999999999999999999999999987553
No 31
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=108.19 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=56.2
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567789999999999999987 899999999999999999999999999999999998754
No 32
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=104.71 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=53.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
++|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4677889999999999999987 89999999999999999999999999999999865
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=110.71 Aligned_cols=59 Identities=24% Similarity=0.377 Sum_probs=55.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 5677889999999999999998 8999999999999999999999999999999999874
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.49 E-value=3.2e-14 Score=107.43 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=57.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5677889999999999999998 899999999999999999999999999999999998654
No 35
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=108.65 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=56.2
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s 322 (333)
.+.|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 345778999999999999999 8999999999999999999999999999999999987653
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.49 E-value=3.5e-14 Score=111.11 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=57.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLS-HAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~-H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|+.|+.+++..|+.+|.. |+.+|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5677889999999999999996 6778999999999999999999999999999999998763
No 37
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=5.3e-14 Score=109.27 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=56.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567789999999999999999 899999999999999999999999999999999987643
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.48 E-value=5.2e-14 Score=103.57 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999998 89999999999999999999999999999999998753
No 39
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.47 E-value=5.2e-14 Score=108.70 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=54.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 4556778999999999999998 8999999999999999999999999999999999864
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.47 E-value=4e-14 Score=106.90 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=56.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 4677889999999999999988 89999999999999999999999999999999998753
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.46 E-value=1.7e-14 Score=108.80 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=56.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4677889999999999999988 899999999999999999999999999999999987654
No 42
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=5e-14 Score=109.51 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=55.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 4667889999999999999988 8999999999999999999999999999999999874
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.46 E-value=9.5e-14 Score=108.50 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=56.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 5667789999999999999998 89999999999999999999999999999999998754
No 44
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.45 E-value=9.5e-14 Score=107.21 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=55.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999998 8999999999999999999999999999999999874
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.45 E-value=1.1e-13 Score=108.08 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=53.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 5667889999999999999999 89999999999999999999999999999999998864
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=104.25 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=58.2
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 324 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~s 324 (333)
++.|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 456789999999999999999 899999999999999999999999999999999998776544
No 47
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=105.04 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=56.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|.|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4556778999999999999998 899999999999999999999999999999999998654
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=105.85 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=54.9
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
+|+.+|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45667999999999999999 899999999999999999999999999999999998754
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=100.95 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=49.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 36899999999999998 8999999999999999999999999999999998863
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=8.8e-14 Score=106.37 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=55.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
.++|..|+..+..+|+.+|... +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999831 799999999999999999999999999999999987643
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.3e-13 Score=105.13 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=54.3
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|+.|+..+..+|+.+|... +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS--CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 467789999999999999831 799999999999999999999999999999999987643
No 52
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.42 E-value=1.4e-13 Score=110.36 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=56.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|+.|+..++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 5667789999999999999999 89999999999999999999999999999999998754
No 53
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.41 E-value=2.6e-13 Score=118.43 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=54.4
Q ss_pred HhhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019947 256 ILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (333)
Q Consensus 256 ~~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s 322 (333)
...+|+|+.|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|+....
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 345677889999999999999999 7999999999999999999999999999999999987543
No 54
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.41 E-value=2.2e-13 Score=107.65 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=54.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 5667889999999999999988 89999999999999999999999999999999998753
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.8e-13 Score=109.73 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=55.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------Ls~kQV~NWF~N~RrR~kk~ 319 (333)
++|.|..|++.++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 4566779999999999999999 89999999999999999 99999999999999999875
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=3.8e-13 Score=107.76 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=50.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
..|+.+++..|+.+|.. +|||+..++..||..|||+..||.+||+|+|+|.++.
T Consensus 16 k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 48999999999999999 8999999999999999999999999999999888763
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=116.64 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=54.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
++|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|+
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4556778999999999999999 899999999999999999999999999999999987
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=103.65 Aligned_cols=53 Identities=30% Similarity=0.520 Sum_probs=49.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
+-+++++..|+..|.. +|||+..++..||..|||+..||.+||+|+|.|.|+.
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3478999999999999 8999999999999999999999999999999998863
No 59
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=107.42 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=55.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4466789999999999999998 89999999999999999999999999999999999854
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=3.3e-13 Score=103.62 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=55.5
Q ss_pred cCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 260 RRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf-~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
+++++++..+..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.|.|+...++
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 445678889999999999 66 89999999999999999999999999999999999887664
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=3.3e-13 Score=108.56 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=53.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+++|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 5667889999999999999988 8999999999999999999999999999999998875
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.9e-13 Score=104.63 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=52.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
..+|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++...
T Consensus 17 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345999999999999999 899999999999999999999999999999999987644
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=7.5e-13 Score=99.53 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=52.9
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
.+..+.++++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~~ 63 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCCC
Confidence 3457789999999999987 899999999999999999999999999999999987544
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.36 E-value=5.6e-13 Score=104.50 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=54.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHA--KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~--~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|+.|+.+++..|+ -|..+. .+|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 56778899999999999 577754 48999999999999999999999999999999998863
No 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=1.1e-12 Score=99.24 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 019947 267 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 324 (333)
Q Consensus 267 k~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~s 324 (333)
..+...|+..|..+ ++||+..++..||..+||++.||.+||+|+|.+.|...||++
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~~ 64 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 34689999999543 799999999999999999999999999999999999888764
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.35 E-value=1.2e-12 Score=114.42 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=54.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|+.|+..++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.+
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 5667889999999999999999 89999999999999999999999999999999999853
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.34 E-value=1.2e-12 Score=115.11 Aligned_cols=64 Identities=17% Similarity=0.429 Sum_probs=52.5
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.++|+|+.|+..++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 35667789999999999999999 89999999999999999999999999999999999987643
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=2.7e-12 Score=98.45 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=59.7
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+||.|+.|+.++..+|+..|..- +|||+.++++.||.+|||++.+|..||+|+|--.+.+.+|+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 367788899999999999999984 69999999999999999999999999999999999877664
No 69
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.33 E-value=1.9e-12 Score=111.69 Aligned_cols=59 Identities=19% Similarity=0.409 Sum_probs=54.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4566789999999999999999 8999999999999999999999999999999999874
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.31 E-value=3.2e-12 Score=97.73 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s 322 (333)
.++..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 4688999999999999 8999999999999999999999999999999999987543
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.30 E-value=2.6e-12 Score=104.64 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=53.1
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhhhh
Q 019947 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQRKR 315 (333)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~------------------tg---Ls~kQV~NWF~N~RrR 315 (333)
.++|.|..|+..++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|++
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45667789999999999999998 899999999999999 88 9999999999999999
Q ss_pred cccCCC
Q 019947 316 NWHANP 321 (333)
Q Consensus 316 ~kk~~~ 321 (333)
.+....
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 987644
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=103.43 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=54.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhhc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 316 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~t---------------------gLs~kQV~NWF~N~RrR~ 316 (333)
++|.|..|++.++.+|+.+|.. +|||+..+|..||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566778999999999999999 8999999999999999 799999999999999998
Q ss_pred ccC
Q 019947 317 WHA 319 (333)
Q Consensus 317 kk~ 319 (333)
++.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.24 E-value=3.6e-12 Score=110.84 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=54.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5667789999999999999987 8999999999999999999999999999999999874
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.07 E-value=8.7e-11 Score=112.33 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=50.6
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
.+..|...++..|+..|.. +|||+..+|..||..|||++.||++||+|+|+|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3457999999999999988 79999999999999999999999999999999976
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=107.08 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=52.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 316 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~NWF~N~RrR~ 316 (333)
++|.|..|++.++.+|+.||.. +|||+..+|..||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4566778999999999999999 89999999999999998 89999999999999976
Q ss_pred c
Q 019947 317 W 317 (333)
Q Consensus 317 k 317 (333)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.06 E-value=6.2e-11 Score=107.10 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=52.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 316 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~NWF~N~RrR~ 316 (333)
++|.|..|++.++.+|+.+|.. +|||+..+|..||..+| |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4567789999999999999999 79999999999999999 99999999999999998
Q ss_pred cc
Q 019947 317 WH 318 (333)
Q Consensus 317 kk 318 (333)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.6e-10 Score=85.85 Aligned_cols=49 Identities=20% Similarity=0.429 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 267 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 267 k~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
++++.+|+..|.. ||||+.+++..||..+||+...|+.||+|+|.+..-
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~~ 62 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYS 62 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccccC
Confidence 6789999999999 899999999999999999999999999999985543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.56 E-value=0.00038 Score=47.10 Aligned_cols=17 Identities=35% Similarity=0.607 Sum_probs=15.5
Q ss_pred hhhhhhhhhhhhhcccC
Q 019947 303 KQINNWFINQRKRNWHA 319 (333)
Q Consensus 303 kQV~NWF~N~RrR~kk~ 319 (333)
.||..||+|+|.|.|+.
T Consensus 1 rQVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CCTTTTTTCSHHHHTSS
T ss_pred CCceeccHHHHHHHHHH
Confidence 48999999999999986
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.33 E-value=0.011 Score=45.28 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019947 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 312 (333)
.++..+++|+++|..| -...+++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 3556789999999995 78999999999999999999999999743
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.18 E-value=7.1 Score=30.95 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=39.1
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR 315 (333)
+|..|+.+.+..+-.++.. ++.++. ..+|+..|++...|.+|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 4668999998888777766 576663 358899999999999999887664
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=71.84 E-value=6.2 Score=27.51 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R 313 (333)
+++++.+.+......+.. .++.......+|...|++..+|.+|....+
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457888887666555444 222122356899999999999999965433
No 82
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.18 E-value=6.4 Score=27.50 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
..||+..+.+|.-.|.. .++ -.++|..+|++...|.++....|++.++..
T Consensus 14 ~~L~~~~r~il~l~~~~----g~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLL----GLS----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 35899999999876654 232 247999999999999999999999988653
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.47 E-value=20 Score=22.41 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..++.+.+..+...+.. .+ + ...+|+.+|++...|..|....
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~-s---~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV-S---LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC-C---HHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCcCHHHHHHHHhhH
Confidence 46777776555444443 33 2 4578999999999999998644
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.10 E-value=5.6 Score=30.01 Aligned_cols=47 Identities=6% Similarity=0.196 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
.||...+.+|.-.|.. .|. -.++|+.+|++...|.++....|++.++
T Consensus 37 ~L~~~~r~vl~l~~~~----g~s----~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GWS----TAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4899999999876555 232 3579999999999999999999998875
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=58.26 E-value=25 Score=26.33 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=32.5
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 314 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~Rr 314 (333)
++.+++.+.+......+.. .+ -...+|+.+|++...|.+|....+.
T Consensus 19 ~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4568888886555555543 22 1458899999999999999865443
No 86
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.69 E-value=13 Score=26.22 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.||+..+.+|.-.|.-.-...+. -.++|+.+|++...|.++....+++.++..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s----~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT----LEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58889999987766210001322 246999999999999999999999998754
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=49.67 E-value=9.3 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.||+..+.++. .|.. .|+ -.++|+.+|++...|.++....|++.++.
T Consensus 109 ~L~~~~r~v~~-~~~~----g~s----~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GYS----YREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 47888999998 4444 332 35799999999999999999999988753
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.01 E-value=14 Score=26.51 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc-cC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW-HA 319 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k-k~ 319 (333)
.||+..+.+|.-.|.-.-..++. -.++|+.+|++...|.+|...++++.+ ..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s----~~eIA~~l~is~~tV~~~~~ra~~kLr~~~ 62 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT----LEEVGAYFGVTRERIRQIENKALRKLKYHE 62 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHhcccCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHhhH
Confidence 58999999998776510001322 247999999999999999999999988 54
No 89
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=47.62 E-value=22 Score=31.96 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHhhhhhC
Q 019947 140 HYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179 (333)
Q Consensus 140 ~Yc~vL~kykEEL~kP~~~~~~EA~~fc~~iEsQL~sL~~ 179 (333)
.|-.-|-....-|..+.+ ..|.+.+|+++...|..+|+
T Consensus 83 ~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 366666666777777654 67999999999999999997
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=47.53 E-value=15 Score=27.41 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.||+..+.+|.-.|.-.-..++ | -..+|..+|++...|.++...++++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~-s---~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK-T---LEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877651000132 2 347899999999999999999999998754
No 91
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.35 E-value=24 Score=26.80 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
.||+..+++|.-. .. .+. -.++|+.+|++...|.++..+.+++.+..+.
T Consensus 27 ~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 27 GLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 5899999999875 33 332 2579999999999999999999999987654
No 92
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=47.08 E-value=35 Score=28.00 Aligned_cols=53 Identities=6% Similarity=0.108 Sum_probs=39.2
Q ss_pred hcCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhhh
Q 019947 259 KRRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQ-ET--GLQLKQINNWFINQRK 314 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf-~~H~~~PYPs~~eK~~LA~-~t--gLs~kQV~NWF~N~Rr 314 (333)
+++|..|+-+++..+..|+ .. +|-.+..+-...|. .. |++...|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5677899999999999998 45 57666544433222 67 7899999999987544
No 93
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.75 E-value=35 Score=25.43 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.||+..+.+|.-+ .. .|.. .++|+.+|++...|.++..+.|++.+..+
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 5888899999764 33 3332 37899999999999999999999988754
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.32 E-value=18 Score=25.84 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
||+..+.+|.-+ .. .++. .++|..+|++...|.++....+++.+..+
T Consensus 17 L~~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GLPN----KSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHH-TT----TCCH----HHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 677788888663 22 3322 47999999999999999999999988754
No 95
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.97 E-value=74 Score=24.49 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhH---------HhhhhHHHHHHHHHHHHHhhhhh
Q 019947 131 DKELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (333)
Q Consensus 131 dpELDqFMe~Yc~vL~kykEEL~kP---------~~~~~~EA~~fc~~iEsQL~sL~ 178 (333)
.-|+|+.-.+--+...||.+|+..- +++..++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777788888887653 23556788888888999999885
No 96
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.47 E-value=82 Score=25.52 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=39.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHh------CCChhhhhhhhhhhhhhcccCCCCCCc
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKAR-LVQET------GLQLKQINNWFINQRKRNWHANPSSST 325 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~-LA~~t------gLs~kQV~NWF~N~RrR~kk~~~s~st 325 (333)
+..++.+....+..++.+ +|--+..+... |.+.. .++...|..|+...+..-.+.-.+.|+
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~ 148 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGA 148 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCC
Confidence 346777788888888877 56566555433 32221 489999999998777665555444444
No 97
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.58 E-value=45 Score=25.07 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019947 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 312 (333)
....+..|...|+..|-++.+ .||+.+|+++.++...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~---~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLS---VLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHH---HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 456677888888777556644 58888888888888877643
No 98
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=40.66 E-value=24 Score=24.63 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=39.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
...|++..+.+|.-+ .. .+ + -.++|+.+|++...|..++...+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~-~~----g~-s---~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ----DK-T---TKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT----TC-C---HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHH-Hc----CC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 357999999999764 22 33 2 357999999999999999999998877643
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=40.12 E-value=20 Score=28.57 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
.||+..+.++.-.|.. .++ -.++|+.+|++...|.+|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DYS----LAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4899999999876655 332 2579999999999999999999988765
No 100
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.95 E-value=20 Score=26.52 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.|++..+++|.-+ .. .+ .-.++|+.+|++...|.++..+.+++.+..+
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5888888888764 22 33 2357999999999999999999999887654
No 101
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.37 E-value=16 Score=30.16 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.||+..+.+|.-.|.. .++- .++|+.+|++...|.++...+|++.++.
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s~----~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLSY----EEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCCH----HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCCH----HHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3788888888766554 3322 4799999999999999999999998764
No 102
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=38.49 E-value=46 Score=25.86 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=38.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
...||+..+++|.-++ . .+. -.++|+.+|++...|.++..+.+++..-.
T Consensus 32 ~~~Lt~re~~Vl~l~~-~----G~s----~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-E----GFL----VTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHHHH-H----TCC----HHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4579999999996644 4 221 26899999999999999999998887654
No 103
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.84 E-value=18 Score=30.71 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.||+..+.+|.-.|.. .++ -.++|+.+|++...|..+...+|++.++.
T Consensus 187 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----ELP----AKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999877654 332 24799999999999999999999998763
No 104
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=37.74 E-value=18 Score=26.00 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~R 313 (333)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 35899999999999999998754
No 105
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.68 E-value=16 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|..+.+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998743
No 106
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.37 E-value=17 Score=24.69 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~R 313 (333)
...||+.+|++...|.+|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 35799999999999999997743
No 107
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.52 E-value=11 Score=30.92 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.||+..+.+|.-.|... .+| .++|+.+|++...|.++....|++.++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48999999998766653 333 2689999999999999999999988753
No 108
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=36.24 E-value=17 Score=24.92 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|+.|..+.+
T Consensus 20 ~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 20 TELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 5799999999999999998754
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=34.24 E-value=79 Score=23.98 Aligned_cols=52 Identities=8% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhhh
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTE-EDKARLVQETGLQLKQINNWFINQRK 314 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~-~eK~~LA~~tgLs~kQV~NWF~N~Rr 314 (333)
+.+|+.+.+...-..+..+- .-|++. .-...+|..+|++..+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45788888755544443310 013332 35678999999999999999765443
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.01 E-value=31 Score=23.30 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 292 ARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.++|+.+|++...|.++..+.+++.+..+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999887654
No 111
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.00 E-value=51 Score=24.65 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 314 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~Rr 314 (333)
++|+.+.+...-..+... ..+ -...+|+.+|++...|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~--~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS--DGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG--GGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHc--CCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 568888765554444321 011 2568999999999999999865543
No 112
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.44 E-value=21 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 27 RWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998754
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.15 E-value=21 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~R 313 (333)
...||+.+|++...|.+|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987743
No 114
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.29 E-value=24 Score=27.98 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
.||+..+.++.-.|.. .++ -.++|+.+|++...|.++....|++.++
T Consensus 25 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DYS----LSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CCC----HHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4899999998876555 332 2579999999999999999999998775
No 115
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=32.12 E-value=54 Score=20.71 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=28.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..++.+....+...+.. .+ + ...+|+.+|++...|..|+...
T Consensus 4 ~~~~~~~~~~i~~l~~~----g~-s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 4 RAINKHEQEQISRLLEK----GH-P---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp CSSCTTHHHHHHHHHHT----TC-C---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCCCHHHHHHHHHHc
Confidence 35666655555555443 22 2 4578999999999999998643
No 116
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.11 E-value=23 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHCCCHHHHHHHHCCCC
Confidence 4799999999999999997653
No 117
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=31.97 E-value=9.4 Score=29.61 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=8.5
Q ss_pred HhCCChhhhhhhhhhhhhhcccCCC
Q 019947 297 ETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 297 ~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
..+.+..+|-.||.+.|...+....
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~ 26 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKV 26 (97)
T ss_dssp ------CCCCGGGGC----------
T ss_pred CCCCCCcccccccccccCCCCCCCC
Confidence 3567788899999999987665443
No 118
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=31.87 E-value=23 Score=24.11 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~R 313 (333)
...||+.+|++...|+.|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987754
No 119
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=31.24 E-value=65 Score=25.15 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=40.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhc--CCCCCCHHHHH----HHHHHhCCChhh-hhhhhhhhhhhc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHA--KWPYPTEEDKA----RLVQETGLQLKQ-INNWFINQRKRN 316 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~--~~PYPs~~eK~----~LA~~tgLs~kQ-V~NWF~N~RrR~ 316 (333)
+++.+..+..+.-..|..|+.... .-| ||...-. .|+...|++.-. =++|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 344455677888999999998754 345 7766654 455667776433 358999988876
No 120
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=30.47 E-value=32 Score=24.72 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|+.|..+.+
T Consensus 29 ~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 29 SELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999998754
No 121
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.33 E-value=25 Score=24.60 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|..+.+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998765
No 122
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=29.56 E-value=24 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..||+.+|++...|..|..+.
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 123
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.34 E-value=27 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.6
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..||+.+|++...|..|..+.
T Consensus 30 ~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 30 ETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 469999999999999998775
No 124
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=28.60 E-value=30 Score=25.15 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|++|..+.+
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998865
No 125
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.13 E-value=82 Score=24.39 Aligned_cols=51 Identities=12% Similarity=-0.092 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC--CChhhhhhhhhhhhh-hcccC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG--LQLKQINNWFINQRK-RNWHA 319 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg--Ls~kQV~NWF~N~Rr-R~kk~ 319 (333)
...++.+....+..+ .. +|.-+. ..|+..+| ++...|..|+..... +.+++
T Consensus 58 ~~~l~~~~~~~i~~~-~~---~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~ 111 (141)
T 1u78_A 58 RKALSVRDERNVIRA-AS---NSCKTA---RDIRNELQLSASKRTILNVIKRSGVIVRQKL 111 (141)
T ss_dssp CCSSCHHHHHHHHHH-HH---HCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-------
T ss_pred CCcCCHHHHHHHHHH-Hh---CCCCCH---HHHHHHHCCCccHHHHHHHHHHCCCceeeec
Confidence 346788777767666 33 354454 35777778 799999999976554 44433
No 126
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=28.11 E-value=25 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|++|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 3799999999999999997754
No 127
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.80 E-value=33 Score=25.46 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|+.|..+.+
T Consensus 26 ~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHhCCC
Confidence 4699999999999999998753
No 128
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.57 E-value=34 Score=23.98 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHhCCChhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWF 309 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF 309 (333)
..||+.+|++..-|+.|.
T Consensus 14 ~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 14 RAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 579999999999999998
No 129
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=25.21 E-value=36 Score=25.13 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~R 313 (333)
...||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 130
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=24.97 E-value=36 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999998754
No 131
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.88 E-value=1.2e+02 Score=22.77 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019947 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 312 (333)
....+.+|...|...| ++. ..||+..|+++.++...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~~---~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-ITI---EKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CCH---HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CCH---HHHHHHHCCCHHHHHHHHHHH
Confidence 4566778888887777 554 468888889888888877643
No 132
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.77 E-value=33 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|+.|..+.+
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999987753
No 133
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.45 E-value=62 Score=28.67 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=40.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
..||+..+++|.-.+ + .++ -.++|+.+|++...|.+...+.|++.+..+
T Consensus 196 ~~L~~~erevl~L~~-~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 469999999998763 3 332 347899999999999999999999998764
No 134
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=24.02 E-value=73 Score=20.23 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=17.5
Q ss_pred HHHHHhhCCChHHHHHHHHhhh
Q 019947 73 CKAEIVGHPLYEQLLSAHVSCL 94 (333)
Q Consensus 73 iKakI~sHPlYp~Ll~A~idC~ 94 (333)
+-.+|++.|||.-||+|--..+
T Consensus 5 lipkiissplfktllsavgsal 26 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHT
T ss_pred hhhHHHccHHHHHHHHHHHHHh
Confidence 3468999999999999865544
No 135
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.35 E-value=2.2e+02 Score=22.86 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhH---------HhhhhHHHHHHHHHHHHHhhhhh
Q 019947 132 KELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (333)
Q Consensus 132 pELDqFMe~Yc~vL~kykEEL~kP---------~~~~~~EA~~fc~~iEsQL~sL~ 178 (333)
-|+|..-.+.=+...||.+|+..- +++..+++++.--.+|.++.+|.
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 344554444445555666665442 22455677776667888888886
No 136
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=23.17 E-value=17 Score=30.67 Aligned_cols=46 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
.||+..+.+|.-.|... + .-.++|+.+|++...|.+++..+|++.|
T Consensus 198 ~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD----Q----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 47888888887655442 2 2347999999999999999999888754
No 137
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.74 E-value=38 Score=24.66 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..||+.+|++...|..|..+.
T Consensus 34 ~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 34 ESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 138
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=22.73 E-value=38 Score=24.11 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4789999999999999998753
No 139
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.71 E-value=63 Score=25.23 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
.||+..+.++.-.|...-..++ .-.++|..+|++...|.+....++++.++..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5889999999877653111132 2357899999999999999999999988653
No 140
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.33 E-value=2.1e+02 Score=21.56 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=40.1
Q ss_pred cCCCCCChhHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhC--CChhhhhhhhh
Q 019947 260 RRAGKLPGDTTSLLKAWWLSH--AKWPYPTEEDKARLVQETG--LQLKQINNWFI 310 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H--~~~PYPs~~eK~~LA~~tg--Ls~kQV~NWF~ 310 (333)
++...|+.+....|+..|... -.+.|.+.+|-..+.+..| ++..+|..+|.
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445678999999999998874 4478999999888888877 56677777775
No 141
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=22.17 E-value=43 Score=24.63 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.3
Q ss_pred HHHHHHhCCChhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFIN 311 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N 311 (333)
..||+.+|++..-|.+|..+
T Consensus 26 ~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 36999999999999999663
No 142
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=21.83 E-value=48 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 019947 130 DDKELDQFMTHYVLLLYSFKEQL 152 (333)
Q Consensus 130 ~dpELDqFMe~Yc~vL~kykEEL 152 (333)
...+|+.|+.+|+.+|...=.-|
T Consensus 63 ~~~~l~~F~~~Y~~v~K~~M~~L 85 (91)
T 2w9j_A 63 ELDYFTDFFQSYAEVXKGQIVGL 85 (91)
T ss_dssp EGGGHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHhCCccc
Confidence 45899999999999998654444
No 143
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=21.63 E-value=1.2e+02 Score=22.95 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019947 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 311 (333)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N 311 (333)
....+..|...|...| ++. ..||+.+|+++.++...|.-
T Consensus 8 ~i~~~~~~i~~~~~~~-~~~---~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LST---DDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CCH---HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CCH---HHHHHHHCcCHHHHHHHHHH
Confidence 4566678888887777 554 46788888888888877764
No 144
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=21.44 E-value=46 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|.+|..+.+
T Consensus 21 ~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 21 QQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998754
No 145
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=20.96 E-value=47 Score=26.70 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 019947 130 DDKELDQFMTHYVLLLYSF 148 (333)
Q Consensus 130 ~dpELDqFMe~Yc~vL~ky 148 (333)
...+|+.|+.+|+.||...
T Consensus 71 ~~~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 71 SSKEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp ETTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999764
No 146
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.21 E-value=53 Score=21.76 Aligned_cols=21 Identities=5% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFIN 311 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N 311 (333)
..++|+.+|++...|.+|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 447899999999999999853
No 147
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.12 E-value=49 Score=25.09 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.7
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
.+||+.+|++...|..|..++
T Consensus 41 ~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 41 GELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999883
No 148
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.00 E-value=51 Score=24.08 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|..|..+.+
T Consensus 30 ~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 30 KDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4689999999999999998754
Done!