Query 019947
Match_columns 333
No_of_seqs 290 out of 1097
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 09:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019947.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019947hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.8 3.2E-20 2.3E-24 137.8 6.8 59 259-317 3-61 (62)
2 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.8 8.7E-20 6.4E-24 139.1 7.3 63 259-321 2-64 (73)
3 d1k61a_ a.4.1.1 (A:) mat alpha 99.8 2.3E-19 1.6E-23 132.2 7.2 58 262-319 2-59 (60)
4 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.7 9.3E-17 6.8E-21 121.5 7.8 64 258-323 7-70 (71)
5 d2craa1 a.4.1.1 (A:7-64) Homeo 99.6 6.9E-16 5E-20 112.8 7.3 57 259-318 2-58 (58)
6 d1le8a_ a.4.1.1 (A:) Mating ty 99.6 6.8E-16 5E-20 110.7 7.0 53 262-317 1-53 (53)
7 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.6 4.9E-16 3.5E-20 116.7 6.1 60 258-320 8-67 (67)
8 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.6 6.8E-16 4.9E-20 112.3 6.6 57 259-318 1-57 (57)
9 d1au7a1 a.4.1.1 (A:103-160) Pi 99.6 1.1E-15 8E-20 111.5 7.4 57 260-319 1-57 (58)
10 d1fjla_ a.4.1.1 (A:) Paired pr 99.6 2.5E-16 1.8E-20 117.5 4.0 61 258-321 2-62 (65)
11 d1bw5a_ a.4.1.1 (A:) Insulin g 99.6 1.2E-15 8.6E-20 114.1 7.5 60 258-320 3-62 (66)
12 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.6 1.6E-15 1.2E-19 110.3 7.5 57 261-320 1-57 (57)
13 d1ftta_ a.4.1.1 (A:) Thyroid t 99.6 1.3E-15 9.5E-20 114.5 7.2 62 258-322 2-63 (68)
14 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.6 1.2E-15 9E-20 111.1 6.7 57 259-318 1-57 (58)
15 d1p7ia_ a.4.1.1 (A:) Engrailed 99.6 3.1E-15 2.2E-19 107.2 7.1 53 260-315 1-53 (53)
16 d9anta_ a.4.1.1 (A:) Antennape 99.5 2.4E-15 1.7E-19 109.3 6.0 56 262-320 1-56 (56)
17 d1jgga_ a.4.1.1 (A:) Even-skip 99.5 3.4E-15 2.5E-19 108.5 6.8 56 260-318 1-56 (57)
18 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.5 8.5E-16 6.2E-20 112.7 3.2 57 259-318 2-58 (60)
19 d1pufa_ a.4.1.1 (A:) Homeobox 99.5 3.6E-15 2.6E-19 114.7 6.8 59 258-319 13-71 (77)
20 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.5 4.4E-15 3.2E-19 114.1 6.9 61 258-321 9-69 (77)
21 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.5 4E-15 2.9E-19 111.5 5.8 58 259-319 2-59 (67)
22 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.5 1.1E-14 7.8E-19 111.4 7.1 56 261-319 6-61 (76)
23 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.5 1.8E-14 1.3E-18 110.1 7.7 58 261-321 7-64 (76)
24 d1b72a_ a.4.1.1 (A:) Homeobox 99.5 1.2E-14 8.4E-19 114.5 5.8 59 258-319 27-85 (88)
25 d2cuea1 a.4.1.1 (A:7-74) Paire 99.5 1.5E-14 1.1E-18 108.5 5.7 58 259-319 2-59 (68)
26 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.5 2.3E-14 1.7E-18 102.4 5.8 52 266-319 1-52 (52)
27 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.4 6.8E-14 5E-18 106.3 6.9 59 259-319 2-60 (72)
28 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.4 4.7E-14 3.4E-18 109.3 6.0 59 259-320 1-74 (82)
29 d1s7ea1 a.4.1.1 (A:103-152) He 99.4 2.3E-14 1.7E-18 101.1 3.1 49 262-313 2-50 (50)
30 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.4 7.7E-14 5.6E-18 107.7 6.0 61 258-318 17-78 (80)
31 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.4 6.6E-14 4.8E-18 102.4 5.0 55 261-317 4-58 (59)
32 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.3 5.9E-13 4.3E-17 102.5 6.7 55 262-319 1-76 (78)
33 d2f66c1 a.2.17.3 (C:142-206) V 88.5 0.62 4.5E-05 32.9 6.3 26 128-153 34-59 (65)
34 d1hlva1 a.4.1.7 (A:1-66) DNA-b 77.8 3.2 0.00023 29.3 6.5 47 262-314 5-51 (66)
35 d1ijwc_ a.4.1.2 (C:) HIN recom 73.7 3.4 0.00024 27.2 5.3 42 261-310 2-43 (47)
36 d1or7a1 a.4.13.2 (A:120-187) S 67.4 1.5 0.00011 30.0 2.5 47 264-318 18-64 (68)
37 d1rp3a2 a.4.13.2 (A:164-234) S 66.9 1.6 0.00011 29.8 2.5 47 264-318 21-67 (71)
38 d1bl0a1 a.4.1.8 (A:9-62) MarA 44.1 6.3 0.00046 25.4 2.4 39 269-311 4-42 (54)
39 d1iufa1 a.4.1.7 (A:-2-75) Ars- 36.5 24 0.0017 25.4 4.7 30 259-290 6-35 (78)
40 d2jn6a1 a.4.1.19 (A:1-89) Unch 25.0 24 0.0018 24.8 3.1 46 263-314 4-49 (89)
41 d1b0na2 a.35.1.3 (A:1-68) SinR 24.4 15 0.0011 24.4 1.7 22 292-313 18-39 (68)
42 d1s7oa_ a.4.13.3 (A:) Hypothet 23.8 27 0.0019 26.1 3.2 46 265-318 17-62 (106)
43 d1y7ya1 a.35.1.3 (A:5-73) Rest 23.6 17 0.0013 24.3 1.9 20 293-312 27-46 (69)
44 d2a6ca1 a.35.1.13 (A:1-69) HTH 23.4 22 0.0016 23.8 2.5 21 292-312 23-43 (69)
45 d1y9qa1 a.35.1.8 (A:4-82) Prob 23.3 18 0.0013 24.7 2.0 23 291-313 24-46 (79)
46 d2ppxa1 a.35.1.3 (A:30-91) Unc 23.0 21 0.0015 23.6 2.2 21 292-312 16-36 (62)
47 d2croa_ a.35.1.2 (A:) cro 434 22.4 18 0.0013 23.8 1.8 22 291-312 19-40 (65)
48 d1utxa_ a.35.1.3 (A:) Putative 21.8 18 0.0013 24.0 1.7 22 292-313 18-39 (66)
49 d2r1jl1 a.35.1.2 (L:3-68) P22 21.3 19 0.0014 23.7 1.7 21 292-312 20-40 (66)
50 d1d5ya1 a.4.1.8 (A:3-56) Rob t 21.1 51 0.0037 20.7 3.9 39 269-311 4-42 (54)
51 d2b5aa1 a.35.1.3 (A:1-77) Regu 20.7 23 0.0016 24.0 2.0 21 292-312 27-47 (77)
52 d1f54a_ a.39.1.5 (A:) Calmodul 20.3 86 0.0063 20.6 5.2 48 263-310 2-53 (77)
No 1
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=3.2e-20 Score=137.76 Aligned_cols=59 Identities=42% Similarity=0.879 Sum_probs=56.3
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
|++|++||++++.+|+.||..|..||||+.+++..||..|||+.+||.|||+|+|+|..
T Consensus 3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l 61 (62)
T d1x2na1 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61 (62)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence 56778999999999999999999999999999999999999999999999999999964
No 2
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=8.7e-20 Score=139.14 Aligned_cols=63 Identities=32% Similarity=0.613 Sum_probs=59.5
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
||+|+.|+++++.+|+.||.+|..+|||+.++|..||..|||+.+||.+||+|+|+|.|+..+
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~~ 64 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccch
Confidence 467789999999999999999999999999999999999999999999999999999997654
No 3
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.77 E-value=2.3e-19 Score=132.17 Aligned_cols=58 Identities=22% Similarity=0.509 Sum_probs=54.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
+.+||++++.+|+.||..|..+|||+.+++..||..|||+++||.+||+|+|+|.|+.
T Consensus 2 ~~Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~~ 59 (60)
T d1k61a_ 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhccccccC
Confidence 3469999999999999999999999999999999999999999999999999998863
No 4
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65 E-value=9.3e-17 Score=121.52 Aligned_cols=64 Identities=27% Similarity=0.336 Sum_probs=58.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s~ 323 (333)
.+|+|.+|+++++.+|+.||... +|||+.+++..||.++||+..||.+||+|+|+|.|+..|++
T Consensus 7 ~~r~R~~~t~~Q~~~Le~~F~~~--~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk~~p~s 70 (71)
T d1wi3a_ 7 GPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhcccCCCC
Confidence 45677899999999999999753 79999999999999999999999999999999999987765
No 5
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.60 E-value=6.9e-16 Score=112.81 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=54.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
+|+|..|+.+++.+|+..|.. +|||+.+++..||..+||++.||.+||+|+|.|.||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 2 RKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence 456789999999999999999 899999999999999999999999999999999875
No 6
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.60 E-value=6.8e-16 Score=110.71 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=50.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
|..|+++++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence 468999999999999999 89999999999999999999999999999999975
No 7
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.59 E-value=4.9e-16 Score=116.66 Aligned_cols=60 Identities=22% Similarity=0.466 Sum_probs=56.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|+|..|+++++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+.+
T Consensus 8 ~rr~Rt~~t~~q~~~Le~~F~~---n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~s 67 (67)
T d1ocpa_ 8 RKRKRTSIENRVRWSLETMFLK---CPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67 (67)
T ss_dssp SSSCCSSCCHHHHHHHHHHHSS---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhcCC
Confidence 4677889999999999999988 89999999999999999999999999999999998853
No 8
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59 E-value=6.8e-16 Score=112.26 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=53.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
|+.|.+|++.++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~---n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence 466789999999999999999 899999999999999999999999999999999875
No 9
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.59 E-value=1.1e-15 Score=111.50 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=54.1
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
|+|+.|+.+++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+.
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr~ 57 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHhc
Confidence 46789999999999999999 8999999999999999999999999999999999873
No 10
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.59 E-value=2.5e-16 Score=117.48 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=56.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~~~ 62 (65)
T d1fjla_ 2 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62 (65)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhccc
Confidence 4567789999999999999999 899999999999999999999999999999999987543
No 11
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.59 E-value=1.2e-15 Score=114.11 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=56.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
++|.|..|+++++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+..
T Consensus 3 ~kR~Rt~~t~~Q~~~Le~~F~~---n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~ 62 (66)
T d1bw5a_ 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHHH
Confidence 5677889999999999999999 89999999999999999999999999999999999864
No 12
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58 E-value=1.6e-15 Score=110.32 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=54.2
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
||+.|+.+++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.|+.|
T Consensus 1 kRT~~~~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk~n 57 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHccC
Confidence 4688999999999999999 89999999999999999999999999999999999864
No 13
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.58 E-value=1.3e-15 Score=114.54 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=58.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~s 322 (333)
+||+|..|+..++.+|+..|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 krr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~~~~ 63 (68)
T d1ftta_ 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhcccc
Confidence 5778889999999999999999 8999999999999999999999999999999999987553
No 14
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.58 E-value=1.2e-15 Score=111.09 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
||+|..|++++..+|+..|.. +|||+.+++..||..+||+.+||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhheeecCcchHhHhcc
Confidence 456789999999999999999 899999999999999999999999999999999876
No 15
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.55 E-value=3.1e-15 Score=107.17 Aligned_cols=53 Identities=30% Similarity=0.424 Sum_probs=50.5
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 019947 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR 315 (333)
|+|..|+++++..|+..|.. +|||+.+++..||..+||+..||.+||+|+|.|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence 46788999999999999999 899999999999999999999999999999986
No 16
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.55 E-value=2.4e-15 Score=109.30 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~ 320 (333)
|+.|+++++..|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.+
T Consensus 1 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~~ 56 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56 (56)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhcC
Confidence 468999999999999999 89999999999999999999999999999999998753
No 17
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.55 E-value=3.4e-15 Score=108.50 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=53.6
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
|+|..|+++++.+|+..|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk 56 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhc
Confidence 56789999999999999999 899999999999999999999999999999999886
No 18
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=8.5e-16 Score=112.68 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=54.1
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
||+|..|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 58 (60)
T d1yz8p1 2 RRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58 (60)
T ss_dssp SCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHh
Confidence 466789999999999999998 899999999999999999999999999999999886
No 19
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.54 E-value=3.6e-15 Score=114.75 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=55.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 13 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~ 71 (77)
T d1pufa_ 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHH
Confidence 4566789999999999999999 8999999999999999999999999999999999863
No 20
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.54 E-value=4.4e-15 Score=114.14 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=56.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
++|+|..|+.+++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 69 (77)
T d1vnda_ 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp SCSSCCCCCTTHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHHhh
Confidence 4556778999999999999999 899999999999999999999999999999999987654
No 21
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.52 E-value=4e-15 Score=111.46 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=54.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
||+|..|+.+++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~ 59 (67)
T d1zq3p1 2 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 59 (67)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhhh
Confidence 466789999999999999999 8999999999999999999999999999999999874
No 22
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=1.1e-14 Score=111.36 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=52.3
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
.+.+|+++++.+|+.||.. +|||+.+++..||..|||+..||.+||+|+|.+.|+.
T Consensus 6 ~~~r~T~eQ~~~Le~~F~~---n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~ 61 (76)
T d2ecca1 6 SGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 4457899999999999999 8999999999999999999999999999999988864
No 23
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50 E-value=1.8e-14 Score=110.15 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=52.5
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~~~ 321 (333)
|+..++++++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|+|.++...
T Consensus 7 k~k~~T~~Q~~~Le~~F~~---~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~~~ 64 (76)
T d2ecba1 7 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHHHhH
Confidence 3445799999999999999 899999999999999999999999999999999876543
No 24
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=1.2e-14 Score=114.47 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=53.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++|+|..|+.+++.+|+.+|.. +|||+.+++..||..+||+..||.+||+|+|.|.|+.
T Consensus 27 ~kr~Rt~ft~~Ql~~Le~~F~~---n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~ 85 (88)
T d1b72a_ 27 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 85 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHcCCCHHHeeeccHhHHHHHHHh
Confidence 4567789999999999999998 8999999999999999999999999999999999864
No 25
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.48 E-value=1.5e-14 Score=108.55 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=54.6
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
+|+|+.|+++++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 2 rR~Rt~ft~~Ql~~Le~~F~~---n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~ 59 (68)
T d2cuea1 2 QRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 59 (68)
T ss_dssp CCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhh
Confidence 456789999999999999999 8999999999999999999999999999999998863
No 26
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.47 E-value=2.3e-14 Score=102.35 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 266 PGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 266 pk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
+.++..+|+.+|..+ +|||+.+++..||..+||+..||.+||+|+|.|.|+.
T Consensus 1 T~~q~~iLE~~F~~~--~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~s 52 (52)
T d1x2ma1 1 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52 (52)
T ss_dssp SSCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred ChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCcC
Confidence 356889999999875 7999999999999999999999999999999998863
No 27
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.44 E-value=6.8e-14 Score=106.27 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=53.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk~ 319 (333)
++++..|+.+++.+|+.-|... ++||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~~--n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk~ 60 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS--CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHc--cccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999752 6899999999999999999999999999999998875
No 28
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.44 E-value=4.7e-14 Score=109.31 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=54.5
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcccCC
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHAN 320 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------Ls~kQV~NWF~N~RrR~kk~~ 320 (333)
+|+|..|++.++.+|+.+|.. +|||+..++..||..+| |+..||.+||+|+|.|.|+.+
T Consensus 1 Rr~R~~ft~~Ql~~LE~~F~~---n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~ 74 (82)
T d2cufa1 1 RGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 74 (82)
T ss_dssp CCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhh
Confidence 356789999999999999999 89999999999999885 999999999999999998854
No 29
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.42 E-value=2.3e-14 Score=101.13 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=47.3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R 313 (333)
|..|+++++.+|+.+|.. +|||+.+++..||..+||+.+||.+||+|+|
T Consensus 2 Rt~ft~~Q~~~Le~~F~~---n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 2 RLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CSCCCHHHHHHHHHHTTS---SCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence 578999999999999988 8999999999999999999999999999997
No 30
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.42 E-value=7.7e-14 Score=107.69 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=55.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 258 RKRRAGKLPGDTTSLLKAWWLSHA-KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~-~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
+||+|..|+.++++.|+.+|...+ .+|||+.+++..||+.+||++.||.+||+|+|.+.|+
T Consensus 17 ~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 17 TKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence 567788999999999999999754 4899999999999999999999999999999988775
No 31
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.41 E-value=6.6e-14 Score=102.41 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=49.9
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~k 317 (333)
.+..+..++..+|+.+|..+ +|||+..++..||+.+||+..||.+||+|+|.+.|
T Consensus 4 ~~~~~k~~~~~iLE~~F~~~--~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 4 DSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccC
Confidence 45577888889999999874 79999999999999999999999999999999865
No 32
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.34 E-value=5.9e-13 Score=102.46 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=51.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhcccC
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRNWHA 319 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~NWF~N~RrR~kk~ 319 (333)
|.+|++.++.+|+.+|.. +|||+..+|..||+.++ |++.||.|||+|+|+|.|+.
T Consensus 1 R~~~tp~Ql~~Le~~F~~---n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~ 76 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 76 (78)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CccCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999 89999999999999994 89999999999999999875
No 33
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.48 E-value=0.62 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHh
Q 019947 128 VLDDKELDQFMTHYVLLLYSFKEQLQ 153 (333)
Q Consensus 128 ~g~dpELDqFMe~Yc~vL~kykEEL~ 153 (333)
+..+.|||+|+++|.++.+.|+-.=+
T Consensus 34 ~~~s~elD~Fi~qYl~~RTeYH~rRE 59 (65)
T d2f66c1 34 IDSADDLDQFIKNYLDIRTQYHLRRE 59 (65)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999986543
No 34
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.79 E-value=3.2 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=35.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 019947 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 314 (333)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~Rr 314 (333)
|..|+-..+..+-..+.. +|-.+ +..+|+.+|+...+|++|..|+.+
T Consensus 5 Rk~LT~~eK~~ii~~~e~---g~k~s---q~eIA~~fGv~~STvs~IlKnK~k 51 (66)
T d1hlva1 5 RRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (66)
T ss_dssp SCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cccCCHHHHHHHHHHHHc---CCcch---HHHHHHHhCCChhHHHHHHHHHHH
Confidence 445777776666666677 45333 557999999999999999999754
No 35
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=73.70 E-value=3.4 Score=27.16 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 019947 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFI 310 (333)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~ 310 (333)
++..|++++.+..+..+.. ..| +..+|+.+|++..-|-.||.
T Consensus 2 R~~~lt~~q~~~a~~l~~~----G~s----~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 2 RPRAINKHEQEQISRLLEK----GHP----RQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CCCSSCHHHHHHHHHHHHT----TCC----HHHHHHHHTCCHHHHHHHSC
T ss_pred CCCcCCHHHHHHHHHHHHC----CCC----HHHHHHHHCcCHHHHHhhCC
Confidence 4568999999999999876 433 78999999999999999984
No 36
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=67.39 E-value=1.5 Score=30.02 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
.||+..+.++.-+|... .+ -.++|+..|++...|.+++..+|++.+.
T Consensus 18 ~Lp~~~r~v~~l~~~~~--~s------~~eIA~~lgis~~tv~~~l~ra~~~Lr~ 64 (68)
T d1or7a1 18 SLPEDLRMAITLRELDG--LS------YEEIAAIMDCPVGTVRSRIFRAREAIDN 64 (68)
T ss_dssp HSCHHHHHHHHHHHTTC--CC------HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--CC------HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 38899999998887774 22 2479999999999999999999998775
No 37
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=66.93 E-value=1.6 Score=29.84 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
.||+..+.++.-.|... . .-.++|+.+|++...|.+....+|++.++
T Consensus 21 ~L~~~~r~v~~l~~~~~--~------s~~eIA~~lgis~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 21 KLPEREKLVIQLIFYEE--L------PAKEVAKILETSVSRVSQLKAKALERLRE 67 (71)
T ss_dssp TSCHHHHHHHHHHHTSC--C------CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHh--C------CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998777663 2 24589999999999999999999998875
No 38
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=44.10 E-value=6.3 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019947 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 311 (333)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N 311 (333)
..+.+.+|..+|+..| ++- ..||+..|+++.++..+|..
T Consensus 4 ~i~~v~~yI~~~~~~~-~tl---~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 4 TIHSILDWIEDNLESP-LSL---EKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHHHHTTTTSC-CCC---HHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC-CCH---HHHHHHHCcCHHHHHHHHHH
Confidence 4667789999998888 443 46899999999999999975
No 39
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=36.50 E-value=24 Score=25.43 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=22.8
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHH
Q 019947 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEED 290 (333)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~e 290 (333)
+.+|..++-+++..|+.|+... +|.|+-.+
T Consensus 6 ~~~R~aIs~~qK~ALR~~~~~~--~~~~sqk~ 35 (78)
T d1iufa1 6 KIKRRAITEHEKRALRHYFFQL--QNRSGQQD 35 (78)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS--SSCCCHHH
T ss_pred ccccccCCHHHHHHHHHHHHhc--CCCccHHH
Confidence 4456789999999999997553 78877543
No 40
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=24.97 E-value=24 Score=24.85 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 019947 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 314 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~Rr 314 (333)
++||.+-+...-.-+..+- .+ -...+|+..|++..+|.+|..-.+.
T Consensus 4 k~Ys~EfK~~aV~l~~~~~--g~----s~~~vA~~lGIs~~tl~~W~k~~~~ 49 (89)
T d2jn6a1 4 KTYSEEFKRDAVALYENSD--GA----SLQQIANDLGINRVTLKNWIIKYGS 49 (89)
T ss_dssp CCCCHHHHHHHHHHHTTGG--GS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcC--CC----cHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 4688887655444333321 12 2456999999999999999765544
No 41
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.42 E-value=15 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|+.|-.+.|
T Consensus 18 ~~la~~~gis~~~i~~~E~g~~ 39 (68)
T d1b0na2 18 SELAEKAGVAKSYLSSIERNLQ 39 (68)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHCCCHHHHHHHHcCCC
Confidence 4789999999999999998764
No 42
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=23.85 E-value=27 Score=26.08 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019947 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (333)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~RrR~kk 318 (333)
||+.++.++.-+|... .. -.++|..+|++...|..=+..+|++.+.
T Consensus 17 Lp~~qR~v~~L~y~~~--ls------~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 17 LTDKQMNYIELYYADD--YS------LAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp SCHHHHHHHHHHHHTC--CC------HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC------HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 8999999998887774 22 2478999999999999999998888753
No 43
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=23.59 E-value=17 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=17.9
Q ss_pred HHHHHhCCChhhhhhhhhhh
Q 019947 293 RLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 293 ~LA~~tgLs~kQV~NWF~N~ 312 (333)
.||+.+|++..+|+.|-.++
T Consensus 27 ~lA~~~gis~~~i~~~E~g~ 46 (69)
T d1y7ya1 27 TLAFLSGLDRSYVGGVERGQ 46 (69)
T ss_dssp HHHHHHTCCHHHHHHHHTTC
T ss_pred HHHhHhCCCHHHHHHHHCCC
Confidence 68999999999999998765
No 44
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=23.41 E-value=22 Score=23.83 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=18.6
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
.+||+.+|+++..|+.|..++
T Consensus 23 ~elA~~~gv~~~~is~ie~g~ 43 (69)
T d2a6ca1 23 FKAAELLGVTQPRVSDLMRGK 43 (69)
T ss_dssp HHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHcCHhHHHHHHccc
Confidence 478999999999999999865
No 45
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=23.27 E-value=18 Score=24.68 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~R 313 (333)
...||+.+|++...|.+|..+.+
T Consensus 24 q~~lA~~~gis~~~i~~~E~g~~ 46 (79)
T d1y9qa1 24 LDATAQLTGVSKAMLGQIERGES 46 (79)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcchhHHHHHHcCCC
Confidence 34799999999999999998754
No 46
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.97 E-value=21 Score=23.64 Aligned_cols=21 Identities=10% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..||+.+|++...|++|=.++
T Consensus 16 ~elA~~lGvs~~tvs~~E~G~ 36 (62)
T d2ppxa1 16 EEFSARYHIPLGTLRDWEQGR 36 (62)
T ss_dssp HHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHCCC
Confidence 478999999999999997764
No 47
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=22.43 E-value=18 Score=23.85 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 019947 291 KARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 291 K~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..+||+.+|++...|.+|-.+.
T Consensus 19 q~~lA~~~gvs~~ti~~~E~g~ 40 (65)
T d2croa_ 19 QTELATKAGVKQQSIQLIEAGV 40 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHhHHHHHHCCC
Confidence 3478999999999999997653
No 48
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=21.75 E-value=18 Score=23.96 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQR 313 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~R 313 (333)
..||+.+|++...|+.|-.+.+
T Consensus 18 ~elA~~~gis~~~is~~e~g~~ 39 (66)
T d1utxa_ 18 SELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHhcccCHHHHHHHHcCCC
Confidence 4789999999999999987754
No 49
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=21.30 E-value=19 Score=23.68 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..||+.+|++...|.+|-.+.
T Consensus 20 ~~lA~~~gvs~~~i~~~e~g~ 40 (66)
T d2r1jl1 20 AALGKMVGVSNVAISQWERSE 40 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCCCHHHHHHHHcCC
Confidence 469999999999999998764
No 50
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.12 E-value=51 Score=20.68 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019947 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 311 (333)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N 311 (333)
..+.+.+|..+|+..| .+.+ .||+..|+++..+..=|..
T Consensus 4 ii~~i~~yi~~~~~~~-itl~---~lA~~~~~S~~~l~r~Fk~ 42 (54)
T d1d5ya1 4 IIRDLLIWLEGHLDQP-LSLD---NVAAKAGYSKWHLQRMFKD 42 (54)
T ss_dssp HHHHHHHHHHTTSSSS-CCCH---HHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCC-CCHH---HHHHHHCcCHHHHHHHHHH
Confidence 4566788999999999 4433 7999999999999888864
No 51
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=20.73 E-value=23 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=18.1
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019947 292 ARLVQETGLQLKQINNWFINQ 312 (333)
Q Consensus 292 ~~LA~~tgLs~kQV~NWF~N~ 312 (333)
..||+.+|++..+|.+|....
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~ 47 (77)
T d2b5aa1 27 EELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHcCC
Confidence 368999999999999998764
No 52
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.30 E-value=86 Score=20.62 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=32.9
Q ss_pred CCCChhHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhC--CChhhhhhhhh
Q 019947 263 GKLPGDTTSLLKAWWLSH--AKWPYPTEEDKARLVQETG--LQLKQINNWFI 310 (333)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H--~~~PYPs~~eK~~LA~~tg--Ls~kQV~NWF~ 310 (333)
.+|++++...|+.+|... -...|.+..+-..+....| ++...|..+|.
T Consensus 2 ~~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~ 53 (77)
T d1f54a_ 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMN 53 (77)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 367777777788777763 3467777777777777776 44556766664
Done!