BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019948
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142
V WT EE +F GL K G+ W I++ + SRT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 GSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNY-VVSRTPTQV 134
GS + K WT EE G+QK G+G+W I++NY V+RT +
Sbjct: 1 GSHMTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNY-VVSRTPTQV 134
WT EE G+QK G+G+W I++NY V+RT +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 35.8 bits (81), Expect = 0.032, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNY-VVSRTPTQV 134
WT EE G+QK G+G+W I++NY V+RT +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNY-VVSRTPTQV 134
WT EE G+QK G+G+W I++NY V+RT +
Sbjct: 13 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 35.0 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNY-VVSRTPTQV 134
WT EE G+QK G+G+W I++NY V+RT +
Sbjct: 17 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 54
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142
WT +E L + G G+W+ +A N + ++T + H KYF
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54
>pdb|2Y9Z|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 374
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSL 157
W + E R F+ K G+ + IAR +T +V ++A+ ++ SN+ R +
Sbjct: 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW---SNIERIEDYEKY 182
Query: 158 FDIVADE 164
I+ +E
Sbjct: 183 LKIIENE 189
>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 374
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSL 157
W + E R F+ K G+ + IAR +T +V ++A+ ++ SN+ R +
Sbjct: 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW---SNIERIEDYEKY 182
Query: 158 FDIVADE 164
I+ +E
Sbjct: 183 LKIIENE 189
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQK 140
WT EE +++ G DW+ IA NY+ +RT Q QK
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 47
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQK 140
WT EE +++ G DW+ IA NY+ +RT Q QK
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 47
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGI 121
WT+EE L+G+ K G G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 98 WTEEEHRMFLLGLQKLGKGDWRGI 121
WT+EE L+G+ K G G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,392
Number of Sequences: 62578
Number of extensions: 439810
Number of successful extensions: 705
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 20
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)