Query 019948
Match_columns 333
No_of_seqs 221 out of 519
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.6 5.2E-15 1.8E-19 112.7 7.5 63 95-159 9-71 (72)
2 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.7E-18 108.5 5.0 47 93-141 16-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.4 1.6E-13 5.6E-18 104.6 5.0 51 95-146 8-63 (75)
4 2elk_A SPCC24B10.08C protein; 99.4 5.1E-13 1.7E-17 98.3 5.4 47 96-143 10-57 (58)
5 2eqr_A N-COR1, N-COR, nuclear 99.4 1.5E-12 5.1E-17 96.8 7.4 53 89-146 6-58 (61)
6 1x41_A Transcriptional adaptor 99.3 9E-13 3.1E-17 97.3 5.5 48 95-143 8-55 (60)
7 2yqk_A Arginine-glutamic acid 99.3 6.3E-12 2.2E-16 94.3 7.3 53 91-147 5-57 (63)
8 1guu_A C-MYB, MYB proto-oncoge 99.2 1.3E-11 4.6E-16 87.9 6.4 47 95-142 3-49 (52)
9 1irz_A ARR10-B; helix-turn-hel 99.2 2.2E-11 7.4E-16 93.1 7.0 55 91-147 3-62 (64)
10 2iw5_B Protein corest, REST co 99.2 8.8E-12 3E-16 115.3 5.5 51 90-142 128-178 (235)
11 2xag_B REST corepressor 1; ami 99.2 8.1E-12 2.8E-16 125.4 5.5 50 93-144 378-427 (482)
12 1gvd_A MYB proto-oncogene prot 99.2 2.9E-11 9.9E-16 86.3 5.5 47 95-142 3-49 (52)
13 2crg_A Metastasis associated p 99.1 8.9E-11 3.1E-15 89.9 7.5 53 92-148 5-57 (70)
14 2d9a_A B-MYB, MYB-related prot 99.1 8.6E-11 2.9E-15 86.1 5.8 48 94-142 7-54 (60)
15 1ity_A TRF1; helix-turn-helix, 99.1 2.9E-10 9.9E-15 85.6 7.3 54 90-144 5-60 (69)
16 1w0t_A Telomeric repeat bindin 99.0 3.2E-10 1.1E-14 81.4 6.6 47 95-142 2-50 (53)
17 2dim_A Cell division cycle 5-l 99.0 4.5E-10 1.5E-14 84.6 6.3 48 94-142 8-55 (70)
18 3sjm_A Telomeric repeat-bindin 99.0 7.2E-10 2.4E-14 83.5 6.7 46 95-141 11-58 (64)
19 2cqr_A RSGI RUH-043, DNAJ homo 99.0 9.8E-10 3.4E-14 85.2 6.6 47 94-141 17-66 (73)
20 2ltp_A Nuclear receptor corepr 98.5 8.2E-11 2.8E-15 93.4 0.0 49 95-145 16-64 (89)
21 2din_A Cell division cycle 5-l 98.9 2.4E-09 8.3E-14 79.8 6.8 49 95-146 9-57 (66)
22 1gv2_A C-MYB, MYB proto-oncoge 98.8 2.9E-09 9.8E-14 85.0 5.5 47 95-142 4-50 (105)
23 2ckx_A NGTRF1, telomere bindin 98.8 9.4E-09 3.2E-13 81.4 7.8 51 96-146 1-54 (83)
24 2cjj_A Radialis; plant develop 98.8 7.6E-09 2.6E-13 83.6 6.5 50 96-146 9-61 (93)
25 2aje_A Telomere repeat-binding 98.8 1.1E-08 3.6E-13 84.6 7.1 56 90-145 8-66 (105)
26 4a69_C Nuclear receptor corepr 98.8 4.4E-09 1.5E-13 84.7 4.2 53 89-146 37-89 (94)
27 1wgx_A KIAA1903 protein; MYB D 98.8 4.7E-09 1.6E-13 81.9 4.0 45 96-141 9-56 (73)
28 2k9n_A MYB24; R2R3 domain, DNA 98.8 1.4E-08 4.9E-13 81.8 6.9 50 95-146 53-102 (107)
29 2k9n_A MYB24; R2R3 domain, DNA 98.7 8.4E-09 2.9E-13 83.1 5.5 46 96-142 2-47 (107)
30 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2E-08 6.7E-13 77.6 6.4 45 95-141 8-55 (72)
31 1h8a_C AMV V-MYB, MYB transfor 98.7 1.4E-08 4.8E-13 83.9 5.7 47 95-142 27-73 (128)
32 2roh_A RTBP1, telomere binding 98.7 2.5E-08 8.4E-13 84.4 7.1 56 90-145 26-84 (122)
33 3osg_A MYB21; transcription-DN 98.7 1.9E-08 6.4E-13 83.4 6.2 49 92-142 8-56 (126)
34 3zqc_A MYB3; transcription-DNA 98.7 1.6E-08 5.4E-13 84.2 5.8 46 96-142 3-48 (131)
35 1gv2_A C-MYB, MYB proto-oncoge 98.7 2E-08 6.9E-13 80.1 5.2 45 95-141 56-100 (105)
36 3osg_A MYB21; transcription-DN 98.6 4.7E-08 1.6E-12 81.0 6.7 50 95-146 62-111 (126)
37 2juh_A Telomere binding protei 98.6 4.6E-08 1.6E-12 82.7 6.7 56 90-145 12-70 (121)
38 4eef_G F-HB80.4, designed hema 98.5 1.7E-08 5.7E-13 79.3 1.6 47 92-139 17-66 (74)
39 1h8a_C AMV V-MYB, MYB transfor 98.5 6.2E-08 2.1E-12 80.0 4.1 45 95-141 79-123 (128)
40 3zqc_A MYB3; transcription-DNA 98.5 1E-07 3.5E-12 79.3 5.1 48 95-144 54-101 (131)
41 2llk_A Cyclin-D-binding MYB-li 98.5 1.5E-07 5E-12 73.0 5.3 42 95-139 23-64 (73)
42 1h89_C C-MYB, MYB proto-oncoge 98.5 1.4E-07 4.8E-12 80.3 5.5 47 95-142 58-104 (159)
43 1h89_C C-MYB, MYB proto-oncoge 98.3 2.6E-07 9E-12 78.7 3.7 46 94-141 109-154 (159)
44 1x58_A Hypothetical protein 49 98.2 3.1E-06 1E-10 64.4 6.0 43 95-138 8-52 (62)
45 1ign_A Protein (RAP1); RAP1,ye 97.6 2.6E-05 8.9E-10 72.8 3.8 46 96-142 9-59 (246)
46 1ofc_X ISWI protein; nuclear p 97.5 6.5E-05 2.2E-09 71.9 4.6 49 94-142 211-273 (304)
47 2xag_B REST corepressor 1; ami 97.4 2.4E-05 8.1E-10 78.9 0.0 47 96-147 190-236 (482)
48 1ofc_X ISWI protein; nuclear p 97.3 0.00033 1.1E-08 67.0 6.6 48 97-145 112-159 (304)
49 4b4c_A Chromodomain-helicase-D 96.5 0.003 1E-07 55.3 5.7 54 93-146 5-61 (211)
50 1fex_A TRF2-interacting telome 96.1 0.0059 2E-07 45.2 4.3 48 95-142 2-57 (59)
51 2y9y_A Imitation switch protei 95.8 0.011 3.9E-07 58.0 5.9 49 97-146 125-174 (374)
52 4b4c_A Chromodomain-helicase-D 95.3 0.012 4.1E-07 51.5 3.8 51 95-146 134-197 (211)
53 3hm5_A DNA methyltransferase 1 94.8 0.066 2.3E-06 43.4 6.5 42 96-138 31-76 (93)
54 1ug2_A 2610100B20RIK gene prod 94.4 0.11 3.9E-06 42.4 7.0 51 93-144 31-83 (95)
55 1dsq_A Nucleic acid binding pr 93.9 0.029 1E-06 35.1 2.2 20 2-21 2-21 (26)
56 2xb0_X Chromo domain-containin 93.9 0.034 1.2E-06 52.3 3.5 27 96-122 169-195 (270)
57 2ebi_A DNA binding protein GT- 93.7 0.063 2.2E-06 41.3 4.1 47 93-139 2-60 (86)
58 2hzd_A Transcriptional enhance 92.6 0.14 4.9E-06 40.7 4.7 48 93-140 4-70 (82)
59 2y9y_A Imitation switch protei 90.4 0.32 1.1E-05 47.8 5.6 51 94-145 227-291 (374)
60 2lr8_A CAsp8-associated protei 89.4 0.061 2.1E-06 41.8 0.0 45 95-141 14-60 (70)
61 4iej_A DNA methyltransferase 1 89.7 0.8 2.7E-05 37.1 6.5 50 96-146 31-84 (93)
62 1a6b_B Momulv, zinc finger pro 88.9 0.21 7.3E-06 34.6 2.2 20 3-22 11-30 (40)
63 1nc8_A Nucleocapsid protein; H 87.6 0.2 6.8E-06 31.9 1.3 19 3-21 7-25 (29)
64 1u6p_A GAG polyprotein; MLV, A 83.0 0.44 1.5E-05 35.2 1.5 20 3-22 24-43 (56)
65 2a51_A Nucleocapsid protein; s 83.0 0.69 2.4E-05 30.8 2.3 16 4-19 23-38 (39)
66 2bl6_A Nucleocapsid protein P1 82.4 0.48 1.6E-05 31.3 1.3 17 4-20 2-18 (37)
67 1a1t_A Nucleocapsid protein; s 80.3 0.67 2.3E-05 32.8 1.6 17 4-20 14-30 (55)
68 2bl6_A Nucleocapsid protein P1 80.0 0.97 3.3E-05 29.8 2.2 17 4-20 21-37 (37)
69 2ec7_A GAG polyprotein (PR55GA 79.3 0.82 2.8E-05 32.0 1.7 18 3-20 7-24 (49)
70 2ihx_A Nucleocapsid (NC) prote 77.4 0.97 3.3E-05 32.9 1.7 21 1-21 3-23 (61)
71 2ec7_A GAG polyprotein (PR55GA 76.9 1.2 4.2E-05 31.1 2.1 19 4-22 29-47 (49)
72 2a51_A Nucleocapsid protein; s 76.6 1.2 4E-05 29.7 1.8 18 4-21 2-19 (39)
73 2ihx_A Nucleocapsid (NC) prote 76.4 1.1 3.6E-05 32.7 1.7 20 3-22 31-50 (61)
74 1cl4_A Protein (GAG polyprotei 74.2 1.9 6.4E-05 31.0 2.5 19 3-21 31-49 (60)
75 2xb0_X Chromo domain-containin 74.1 6.7 0.00023 36.8 6.9 49 96-144 4-55 (270)
76 1a1t_A Nucleocapsid protein; s 71.6 1.5 5.1E-05 31.0 1.4 19 3-21 34-52 (55)
77 1cl4_A Protein (GAG polyprotei 70.3 0.9 3.1E-05 32.7 0.0 20 2-21 1-20 (60)
78 2cqf_A RNA-binding protein LIN 67.8 2.4 8.2E-05 31.1 1.9 18 3-20 8-25 (63)
79 2li8_A Protein LIN-28 homolog 65.2 2.6 8.8E-05 32.2 1.7 18 3-20 25-42 (74)
80 2cqf_A RNA-binding protein LIN 63.2 4 0.00014 29.9 2.3 19 3-21 30-48 (63)
81 1ign_A Protein (RAP1); RAP1,ye 62.6 12 0.0004 35.1 5.8 29 116-145 172-200 (246)
82 2li8_A Protein LIN-28 homolog 58.7 4.9 0.00017 30.6 2.2 19 3-21 47-65 (74)
83 3nyb_B Protein AIR2; polya RNA 57.9 4.1 0.00014 31.8 1.6 20 3-22 47-66 (83)
84 2ysa_A Retinoblastoma-binding 57.3 4 0.00014 29.9 1.4 20 3-22 8-27 (55)
85 3ts2_A Protein LIN-28 homolog 57.1 4.1 0.00014 34.6 1.7 18 3-20 98-115 (148)
86 2lli_A Protein AIR2; RNA surve 54.2 6.6 0.00022 31.7 2.3 17 4-20 66-82 (124)
87 4g0a_A Non-structural protein 52.6 5.2 0.00018 38.3 1.7 54 96-157 195-257 (317)
88 2gu0_A Nonstructural protein 2 50.6 4.7 0.00016 38.5 1.0 36 113-156 218-253 (312)
89 3nyb_B Protein AIR2; polya RNA 49.6 5 0.00017 31.3 0.9 19 3-21 6-24 (83)
90 2lli_A Protein AIR2; RNA surve 46.6 9.7 0.00033 30.7 2.2 18 3-20 5-22 (124)
91 2lm1_A Lysine-specific demethy 38.6 44 0.0015 26.2 4.9 45 103-147 47-100 (107)
92 2jz6_A 50S ribosomal protein L 34.9 16 0.00056 28.5 1.7 14 1-14 6-22 (77)
93 2li6_A SWI/SNF chromatin-remod 33.7 42 0.0014 27.0 4.1 31 115-146 70-100 (116)
94 2jrz_A Histone demethylase jar 33.1 51 0.0018 26.6 4.5 44 103-147 43-96 (117)
95 1c20_A DEAD ringer protein; DN 32.6 48 0.0017 27.0 4.3 33 116-148 74-110 (128)
96 2eqy_A RBP2 like, jumonji, at 28.9 1.2E+02 0.004 24.7 6.0 35 115-149 63-100 (122)
97 2rq5_A Protein jumonji; develo 28.5 48 0.0016 27.4 3.6 33 115-147 63-99 (121)
98 1kkx_A Transcription regulator 25.2 47 0.0016 27.3 3.0 31 116-147 70-100 (123)
99 2cxy_A BAF250B subunit, HBAF25 23.7 86 0.0029 25.5 4.3 33 116-148 73-108 (125)
100 1ig6_A MRF-2, modulator recogn 22.6 47 0.0016 26.2 2.4 30 116-145 55-88 (107)
101 2jxj_A Histone demethylase jar 21.3 39 0.0013 26.1 1.7 30 116-145 58-90 (96)
102 2kk0_A AT-rich interactive dom 21.2 1.1E+02 0.0037 25.7 4.5 31 116-146 86-120 (145)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=5.2e-15 Score=112.70 Aligned_cols=63 Identities=35% Similarity=0.558 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHhhhccccCCCcccc
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFD 159 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~~~krkrR~Sl~D 159 (333)
..+||+||+++|++++++||. +|..||+ +|++||..||+.|+++||.+..+....+++.+||+
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 469999999999999999999 9999995 99999999999999999999887777788888875
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=108.50 Aligned_cols=47 Identities=30% Similarity=0.502 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 93 KKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 93 kk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
....+||+||+.+||+||++|| ++|..|| .+|+|||..||+.|+++|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHh
Confidence 3467999999999999999999 7999999 599999999999999876
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=104.60 Aligned_cols=51 Identities=39% Similarity=0.543 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-----CChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 95 GVPWTEEEHRMFLLGLQKLGK-----GDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGk-----GdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
..+||+||+.+|+++|++||. ++|..|| .+|++||..||+.|+|+||.++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHH
Confidence 369999999999999999996 6999999 59999999999999999987654
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.37 E-value=5.1e-13 Score=98.31 Aligned_cols=47 Identities=32% Similarity=0.628 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhhhcC-CCCHHHHHhHHHHHHH
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYVV-SRTPTQVASHAQKYFI 143 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~-TRTp~QV~SHAQKYF~ 143 (333)
.+||+||+.+|++++++||.++|..|| .+|+ +||..||+.|.++||+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 589999999999999999988999999 5999 9999999999999985
No 5
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=96.83 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=47.0
Q ss_pred ccCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 89 SRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 89 ~~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
.++|+...+||+||+++|++||.+||+ +|..|| .+|++||..||. +.||..++
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v---~~Yy~~Kk 58 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCV---LYYYLTKK 58 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHH---HHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHH---HHHHHhcC
Confidence 577888899999999999999999998 999999 699999999995 45776654
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=9e-13 Score=97.28 Aligned_cols=48 Identities=29% Similarity=0.598 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFI 143 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~ 143 (333)
..+||+||+.+|++++++||.++|..|| .+|++||..||+.|+++|+.
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHcc
Confidence 3689999999999999999988999999 59999999999999999975
No 7
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.3e-12 Score=94.33 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=45.4
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHhh
Q 019948 91 ERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSN 147 (333)
Q Consensus 91 ~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~ 147 (333)
.+.....||+||+++|++||.+||+ ||..|++++|++||..|| .+.||.+.+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~---v~fYY~wKkt 57 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL---ITFYYYWKKT 57 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHH---HHHHHHHHCS
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHH---HHHHhcccCC
Confidence 3445579999999999999999999 999999658999999999 5677876543
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.23 E-value=1.3e-11 Score=87.88 Aligned_cols=47 Identities=34% Similarity=0.524 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
.++||+||+.++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3699999999999999999999999999 5999999999999998885
No 9
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.21 E-value=2.2e-11 Score=93.12 Aligned_cols=55 Identities=35% Similarity=0.459 Sum_probs=47.3
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHcCCCC---hhhhhhhh--cCCCCHHHHHhHHHHHHHHHhh
Q 019948 91 ERKKGVPWTEEEHRMFLLGLQKLGKGD---WRGIARNY--VVSRTPTQVASHAQKYFIRQSN 147 (333)
Q Consensus 91 ~rkk~~~WTeEEH~~FL~GLekyGkGd---Wk~IA~~~--V~TRTp~QV~SHAQKYF~r~~~ 147 (333)
.+|.+..||+|.|++|++|++.+| ++ |+.|.+ + |...|..||+||.|||+.++++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 456779999999999999999999 45 899974 5 4567999999999999998764
No 10
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.21 E-value=8.8e-12 Score=115.31 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=45.8
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 90 RERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 90 ~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
...+...+||+||+++|++||.+||+ ||..||+ +|+|||..||+.|+++|.
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999998 9999995 999999999999998774
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.20 E-value=8.1e-12 Score=125.40 Aligned_cols=50 Identities=26% Similarity=0.473 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHH
Q 019948 93 KKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIR 144 (333)
Q Consensus 93 kk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r 144 (333)
+...+||+|||.+|++||++||+ ||+.|| .+|+|||..||++|+++|+.|
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999 999999 599999999999999988443
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.17 E-value=2.9e-11 Score=86.28 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
.++||+||+.++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3699999999999999999998999999 5999999999999998774
No 13
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.14 E-value=8.9e-11 Score=89.92 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=45.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHhhh
Q 019948 92 RKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNV 148 (333)
Q Consensus 92 rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~~ 148 (333)
|+....||+||+.+|++||.+||+ ||..|++++|+|||+.||. +-||.+.+..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v---~fYY~wKkt~ 57 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSII---EYYYMWKTTD 57 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHH---HHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHH---HHHHhhcCCc
Confidence 455679999999999999999999 9999996589999999995 5566666544
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=8.6e-11 Score=86.05 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 94 KGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 94 k~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
+..+||+||++++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHc
Confidence 34699999999999999999988999999 5999999999999998774
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.07 E-value=2.9e-10 Score=85.64 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=47.3
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcC--CCCHHHHHhHHHHHHHH
Q 019948 90 RERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVV--SRTPTQVASHAQKYFIR 144 (333)
Q Consensus 90 ~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~--TRTp~QV~SHAQKYF~r 144 (333)
..+++..+||+||..+++.++++||.++|..|| .+++ .||..||+.+.++|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 345566899999999999999999988999999 5889 99999999998877543
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.05 E-value=3.2e-10 Score=81.38 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcC--CCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVV--SRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~--TRTp~QV~SHAQKYF 142 (333)
.++||+||+++++.++++||.++|..||+ +++ +||..||+.+.++|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHH
Confidence 36999999999999999999889999994 889 999999999987763
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.5e-10 Score=84.63 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 94 KGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 94 k~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
+..+||+||.++++.++++||.++|..|| .+|++||..||+.|.++|+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHc
Confidence 34699999999999999999988999999 5999999999999988764
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.99 E-value=7.2e-10 Score=83.47 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcC--CCCHHHHHhHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVV--SRTPTQVASHAQKY 141 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~--TRTp~QV~SHAQKY 141 (333)
..+||+||.+++++++++||.++|..||+ +++ +||..||+.+.++|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999995 544 99999999988765
No 19
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=9.8e-10 Score=85.21 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 94 KGVPWTEEEHRMFLLGLQKLGK---GDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 94 k~~~WTeEEH~~FL~GLekyGk---GdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
...+||.||..+|+.+|++||+ .+|..|| .+|+.||..||+.|++++
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 4568999999999999999995 4899999 599999999999999866
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.49 E-value=8.2e-11 Score=93.39 Aligned_cols=49 Identities=37% Similarity=0.455 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~ 145 (333)
.++||+||+.+|++++++||. +|..|| .+|++||..||+.|++.|+.+.
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 369999999999999999999 899999 5999999999999999886554
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=79.79 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
..+||.||+.+++.++++||. +|..||+ +++ ||..||+.|.++|+....
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHh
Confidence 368999999999999999999 9999996 665 999999999998877654
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.84 E-value=2.9e-09 Score=84.98 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
.++||+||..+++.++++||.++|..|| .++++||..||+.|.++|+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 3699999999999999999998999999 5999999999999988764
No 23
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.82 E-value=9.4e-09 Score=81.44 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhh---hcCCCCHHHHHhHHHHHHHHHh
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARN---YVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~---~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
.+||+||.+.+++|+++||.|+|..|++. ++..||..||+.+..+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999964 3789999999999998866544
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.79 E-value=7.6e-09 Score=83.58 Aligned_cols=50 Identities=28% Similarity=0.499 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 96 VPWTEEEHRMFLLGLQKLGK---GDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGk---GdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
..||.||..+|+.+|.+||+ .+|..|| .+|+.||..||+.|+++++..+.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999995 3699999 59999999999999998876654
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.78 E-value=1.1e-08 Score=84.55 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=47.5
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhh---cCCCCHHHHHhHHHHHHHHH
Q 019948 90 RERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNY---VVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 90 ~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~---V~TRTp~QV~SHAQKYF~r~ 145 (333)
..|++..+||+||.+.+++|+++||.|.|..|++.+ +..||..||+.+..+++.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 455667899999999999999999999999999744 38999999999998775443
No 26
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.76 E-value=4.4e-09 Score=84.71 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=45.1
Q ss_pred ccCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 89 SRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 89 ~~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
...|+....||+|||++|.+|+..||| +|..|+ .++++||..||. +-||.+.+
T Consensus 37 ~~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV---~~YY~~Kk 89 (94)
T 4a69_C 37 YKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECV---LYYYLTKK 89 (94)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHH---HHHHHHSC
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHH---HHHhcccc
Confidence 345566789999999999999999999 999998 699999999995 55666644
No 27
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=4.7e-09 Score=81.88 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 96 VPWTEEEHRMFLLGLQKLGK---GDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGk---GdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
..||.||..+|+.||..|++ ++|..|| ++|++||..||+-|++..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 47999999999999999997 5799999 599999999999887644
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.75 E-value=1.4e-08 Score=81.76 Aligned_cols=50 Identities=16% Similarity=0.389 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
.++||+||+.+++.++++||. +|..|| .+|++||..||+.|...+..+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence 469999999999999999998 999999 59999999999999987655543
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.75 E-value=8.4e-09 Score=83.11 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
+.||+||..+++.++++||.++|..|| .+|++||+.||+.+..+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999 5999999999999887764
No 30
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=2e-08 Score=77.62 Aligned_cols=45 Identities=29% Similarity=0.519 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---ChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKG---DWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkG---dWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
...||.||+.+|..+|.+|+.| +|..||. ++ .||..||+.|++++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence 3589999999999999999964 6999995 77 59999999998766
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.71 E-value=1.4e-08 Score=83.90 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
.++||+||..+++.++++||.++|..|| .++++||..||+.|.++|+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 3699999999999999999998999999 5999999999999888764
No 32
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.70 E-value=2.5e-08 Score=84.41 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=48.3
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhh---cCCCCHHHHHhHHHHHHHHH
Q 019948 90 RERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNY---VVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 90 ~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~---V~TRTp~QV~SHAQKYF~r~ 145 (333)
..|++..+||+||.+.+++|+++||.|.|..|++.+ +..||..||+.+..+++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 445566899999999999999999999999999753 38999999999998886544
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.70 E-value=1.9e-08 Score=83.35 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=44.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 92 RKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 92 rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
..+.++||+||..+++.++++||. +|..|| .++++||..||+.+.++|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhc
Confidence 344579999999999999999998 999999 5999999999999988775
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.70 E-value=1.6e-08 Score=84.17 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
++||+||..+++.++++||.++|..|| .+|++||..||+.+.++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhcc
Confidence 689999999999999999988999999 5999999999999988775
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.66 E-value=2e-08 Score=80.07 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
.++||+||+.+++.++++||. +|..|| .+|++||..||+.|.+.+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 469999999999999999997 999999 599999999999998655
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.63 E-value=4.7e-08 Score=80.96 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
.++||+||+.++++++++||. .|..|| .++++||..||+.|...+..++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 469999999999999999997 999999 59999999999999877665554
No 37
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.63 E-value=4.6e-08 Score=82.66 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=48.4
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHcCCCChhhhhhhh---cCCCCHHHHHhHHHHHHHHH
Q 019948 90 RERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNY---VVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 90 ~~rkk~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~---V~TRTp~QV~SHAQKYF~r~ 145 (333)
..|++..+||+||.+.+++|+++||.|.|..|++.+ +..||..||+.+..++....
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 345556799999999999999999999999999754 48999999999998886654
No 38
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.54 E-value=1.7e-08 Score=79.29 Aligned_cols=47 Identities=36% Similarity=0.678 Sum_probs=40.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCC---ChhhhhhhhcCCCCHHHHHhHHH
Q 019948 92 RKKGVPWTEEEHRMFLLGLQKLGKG---DWRGIARNYVVSRTPTQVASHAQ 139 (333)
Q Consensus 92 rkk~~~WTeEEH~~FL~GLekyGkG---dWk~IA~~~V~TRTp~QV~SHAQ 139 (333)
+..+..||.||..+|..||.+|+++ +|.+|| ++|+.||..||+.|+|
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence 3345689999999999999999986 899999 5999999999999987
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.51 E-value=6.2e-08 Score=80.02 Aligned_cols=45 Identities=33% Similarity=0.594 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
.++||+||+.++++++++||. +|..|| .+|++||..||+.|...+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 479999999999999999997 999999 599999999999987543
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.49 E-value=1e-07 Score=79.29 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIR 144 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r 144 (333)
.++||+||+.+++.++++||. .|..|| .++++||..||+.|.+.|+.+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHH
Confidence 369999999999999999997 999999 599999999999998776544
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=73.04 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQ 139 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQ 139 (333)
.++||+||.+++++.+++||. +|..||+ ++ .||..||+.+..
T Consensus 23 k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 469999999999999999998 6999995 77 999999998764
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.47 E-value=1.4e-07 Score=80.34 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
.++||+||..+++.++++||.++|..|| .++++||..||+.+.++|+
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 4799999999999999999988999999 5999999999999888774
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.32 E-value=2.6e-07 Score=78.66 Aligned_cols=46 Identities=33% Similarity=0.602 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 94 KGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 94 k~~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
+..+||+||+.++++++++||. +|..|| .+|++||..||+.|...+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 4579999999999999999997 999999 599999999999987643
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.16 E-value=3.1e-06 Score=64.44 Aligned_cols=43 Identities=21% Similarity=0.447 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhh--hhcCCCCHHHHHhHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIAR--NYVVSRTPTQVASHA 138 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~--~~V~TRTp~QV~SHA 138 (333)
+.+||+||.+.+++|+++||+ .|+.|+. .|+..||...++.-.
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~ 52 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKY 52 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHH
Confidence 369999999999999999999 9999995 388999999997643
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.64 E-value=2.6e-05 Score=72.84 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-----hhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGD-----WRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGd-----Wk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
..||+||.++.|+.+++||..+ |..|| .+++.||..||+.|...|.
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 5999999999999999998753 99999 5999999999999998885
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.51 E-value=6.5e-05 Score=71.86 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CChhhhhh-----------hhcCCCCHHHHHhHHHHHH
Q 019948 94 KGVPWTEEEHRMFLLGLQKLGK---GDWRGIAR-----------NYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 94 k~~~WTeEEH~~FL~GLekyGk---GdWk~IA~-----------~~V~TRTp~QV~SHAQKYF 142 (333)
++..||+||++.+|.+|.+||. |.|..|.. .|+.|||+.+|..|++--.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 4568999999999999999999 99999952 4999999999999997443
No 47
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.39 E-value=2.4e-05 Score=78.90 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHhh
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSN 147 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~ 147 (333)
..||++|+.+|.+||.+||+ +|..|+ .+|++||..||- +-||.+.+.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V---~yYY~WKKt 236 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLV---KFYYSWKKT 236 (482)
T ss_dssp ----------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHH---HHhcccccc
Confidence 47999999999999999999 999999 599999999995 456666553
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.29 E-value=0.00033 Score=67.00 Aligned_cols=48 Identities=27% Similarity=0.490 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHH
Q 019948 97 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 97 ~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~ 145 (333)
-||..+-..|+.|+.+||+.+|..|| ..|++||+.+|+-|++-|+.|.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhH
Confidence 59999999999999999999999999 5899999999999998887776
No 49
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.55 E-value=0.003 Score=55.32 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC--CCChhhhhhh-hcCCCCHHHHHhHHHHHHHHHh
Q 019948 93 KKGVPWTEEEHRMFLLGLQKLG--KGDWRGIARN-YVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 93 kk~~~WTeEEH~~FL~GLekyG--kGdWk~IA~~-~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
..-..||+.|-+.|+.|+.+|| .++|..|++. =+..||...|+.+++-+..+..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~ 61 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI 61 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999 7899999752 2568999999999987766643
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.09 E-value=0.0059 Score=45.20 Aligned_cols=48 Identities=10% Similarity=0.275 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CCCChhhhhhhhcCCCCHHHHHhHHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKL--------GKGDWRGIARNYVVSRTPTQVASHAQKYF 142 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLeky--------GkGdWk~IA~~~V~TRTp~QV~SHAQKYF 142 (333)
+.+||+||....+.-|..| |..-|+.|++..++.+|-.+.+.|+.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999 66689999965799999999999998864
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.77 E-value=0.011 Score=58.02 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCChhhhhhhhcC-CCCHHHHHhHHHHHHHHHh
Q 019948 97 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVV-SRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 97 ~WTeEEH~~FL~GLekyGkGdWk~IA~~~V~-TRTp~QV~SHAQKYF~r~~ 146 (333)
.||..+=..|+.|+++||+.+...|| ..|. +||+.+|+.+++-|+.|..
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhhh
Confidence 59999999999999999999999999 4787 9999999999987766653
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.28 E-value=0.012 Score=51.50 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCChhhhhh-------------hhcCCCCHHHHHhHHHHHHHHHh
Q 019948 95 GVPWTEEEHRMFLLGLQKLGKGDWRGIAR-------------NYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGkGdWk~IA~-------------~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
...||++|.+.+|.|+.+||.|.|..|-. .+..+++..++...|. |.+++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 35799999999999999999999999943 1235666778888884 666543
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=94.79 E-value=0.066 Score=43.36 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhhhc----CCCCHHHHHhHH
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYV----VSRTPTQVASHA 138 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V----~TRTp~QV~SHA 138 (333)
..||.||...++.-.++||- .|-.|+..|- +.||..+++...
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHH
Confidence 69999999999999999998 9999996453 579999999865
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.38 E-value=0.11 Score=42.37 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC--CChhhhhhhhcCCCCHHHHHhHHHHHHHH
Q 019948 93 KKGVPWTEEEHRMFLLGLQKLGK--GDWRGIARNYVVSRTPTQVASHAQKYFIR 144 (333)
Q Consensus 93 kk~~~WTeEEH~~FL~GLekyGk--GdWk~IA~~~V~TRTp~QV~SHAQKYF~r 144 (333)
++.+-||.||.+-.|...++-|. ..|..|| ..++.||+.||....|....-
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHHHHH
Confidence 45678999999999999999984 5899999 489999999999999876433
No 55
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=93.95 E-value=0.029 Score=35.11 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=18.1
Q ss_pred CcccCCCCCCCCCCCCCCCC
Q 019948 2 TRRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 2 ~R~CS~c~~~GHnsrtc~~~ 21 (333)
.++|-.||..||-+|.|+..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 46899999999999999975
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.89 E-value=0.034 Score=52.30 Aligned_cols=27 Identities=41% Similarity=0.844 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhh
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIA 122 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA 122 (333)
..|+.+|...+|.||-+||.|.|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 479999999999999999999999995
No 57
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.70 E-value=0.063 Score=41.30 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHHHHHH----cC-----CCChhhhhhhhc---CCCCHHHHHhHHH
Q 019948 93 KKGVPWTEEEHRMFLLGLQK----LG-----KGDWRGIARNYV---VSRTPTQVASHAQ 139 (333)
Q Consensus 93 kk~~~WTeEEH~~FL~GLek----yG-----kGdWk~IA~~~V---~TRTp~QV~SHAQ 139 (333)
+....||++|-.+||..... |. +..|..||..+- -.||+.||+.-..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~ 60 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45679999999999998865 22 127999996321 2799999987554
No 58
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=92.55 E-value=0.14 Score=40.74 Aligned_cols=48 Identities=27% Similarity=0.247 Sum_probs=35.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCC-Chh--------------hhhh----hhcCCCCHHHHHhHHHH
Q 019948 93 KKGVPWTEEEHRMFLLGLQKLGKG-DWR--------------GIAR----NYVVSRTPTQVASHAQK 140 (333)
Q Consensus 93 kk~~~WTeEEH~~FL~GLekyGkG-dWk--------------~IA~----~~V~TRTp~QV~SHAQK 140 (333)
+...-|.++=...|++||..|-.- .|+ -|+. ..-.+||..||.||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 456789999999999999998742 222 1221 23469999999999984
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=90.39 E-value=0.32 Score=47.80 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CChhhhhh-----------hhcCCCCHHHHHhHHHHHHHHH
Q 019948 94 KGVPWTEEEHRMFLLGLQKLGK---GDWRGIAR-----------NYVVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 94 k~~~WTeEEH~~FL~GLekyGk---GdWk~IA~-----------~~V~TRTp~QV~SHAQKYF~r~ 145 (333)
++..||+||.+.+|.+|.+||. |.|..|-. -|+.|||+..+.=++. ..++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~-tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN-TLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 3458999999999999999999 99999932 3599999999998885 44443
No 60
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=89.37 E-value=0.061 Score=41.85 Aligned_cols=45 Identities=29% Similarity=0.475 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--CChhhhhhhhcCCCCHHHHHhHHHHH
Q 019948 95 GVPWTEEEHRMFLLGLQKLGK--GDWRGIARNYVVSRTPTQVASHAQKY 141 (333)
Q Consensus 95 ~~~WTeEEH~~FL~GLekyGk--GdWk~IA~~~V~TRTp~QV~SHAQKY 141 (333)
..-||.||.+-.|...++-|. .-|..||+ -+ .||+.||....|..
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 468999999999999999985 58999996 55 79999999888765
No 61
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=89.66 E-value=0.8 Score=37.15 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCChhhhhhhhc----CCCCHHHHHhHHHHHHHHHh
Q 019948 96 VPWTEEEHRMFLLGLQKLGKGDWRGIARNYV----VSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyGkGdWk~IA~~~V----~TRTp~QV~SHAQKYF~r~~ 146 (333)
..||.||-..++.-.++|+- .|--|+-.|- +.||..+++.+.-..-.++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999998 9999986564 47999999987644444443
No 62
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=88.89 E-value=0.21 Score=34.60 Aligned_cols=20 Identities=30% Similarity=0.969 Sum_probs=17.8
Q ss_pred cccCCCCCCCCCCCCCCCCc
Q 019948 3 RRCSHCSHNGHNSRTCPNRG 22 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~g 22 (333)
-+|-.||..||-+|+||...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 37999999999999999864
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=87.55 E-value=0.2 Score=31.88 Aligned_cols=19 Identities=37% Similarity=0.943 Sum_probs=16.8
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~ 21 (333)
.+|-.||..||-+|.|+.-
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4699999999999999863
No 64
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=83.00 E-value=0.44 Score=35.16 Aligned_cols=20 Identities=30% Similarity=0.969 Sum_probs=17.7
Q ss_pred cccCCCCCCCCCCCCCCCCc
Q 019948 3 RRCSHCSHNGHNSRTCPNRG 22 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~g 22 (333)
-+|-.||..||-+|.||...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999863
No 65
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=82.97 E-value=0.69 Score=30.85 Aligned_cols=16 Identities=31% Similarity=0.876 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCCCCCC
Q 019948 4 RCSHCSHNGHNSRTCP 19 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~ 19 (333)
.|-.||..||-+|.||
T Consensus 23 ~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 23 GCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SCTTTCCSSSCTTTSC
T ss_pred ccccCCCCCCccCcCc
Confidence 4555555555555555
No 66
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=82.45 E-value=0.48 Score=31.30 Aligned_cols=17 Identities=35% Similarity=0.864 Sum_probs=9.7
Q ss_pred ccCCCCCCCCCCCCCCC
Q 019948 4 RCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~~ 20 (333)
+|-.||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 45556666666665553
No 67
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=80.35 E-value=0.67 Score=32.85 Aligned_cols=17 Identities=29% Similarity=0.987 Sum_probs=10.5
Q ss_pred ccCCCCCCCCCCCCCCC
Q 019948 4 RCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~~ 20 (333)
+|-.||..||-+|.|+.
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 56666666666666654
No 68
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=80.05 E-value=0.97 Score=29.78 Aligned_cols=17 Identities=35% Similarity=0.884 Sum_probs=15.2
Q ss_pred ccCCCCCCCCCCCCCCC
Q 019948 4 RCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~~ 20 (333)
+|-.||..||-+|.||+
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999985
No 69
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=79.34 E-value=0.82 Score=31.99 Aligned_cols=18 Identities=39% Similarity=1.012 Sum_probs=10.4
Q ss_pred cccCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~ 20 (333)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 355666666666666654
No 70
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=77.44 E-value=0.97 Score=32.93 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=17.7
Q ss_pred CCcccCCCCCCCCCCCCCCCC
Q 019948 1 MTRRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 1 m~R~CS~c~~~GHnsrtc~~~ 21 (333)
+..+|-.|+..||-+|.|+..
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCcccccCCCCeehhhCcCC
Confidence 456899999999999999875
No 71
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=76.94 E-value=1.2 Score=31.05 Aligned_cols=19 Identities=37% Similarity=0.929 Sum_probs=17.0
Q ss_pred ccCCCCCCCCCCCCCCCCc
Q 019948 4 RCSHCSHNGHNSRTCPNRG 22 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~~~g 22 (333)
.|-.||..||-+|.||.+.
T Consensus 29 ~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 29 GCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp SCSSSCCSSCCGGGCCSSC
T ss_pred eeCcCCCcCCccCCCcCCC
Confidence 5889999999999999763
No 72
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=76.64 E-value=1.2 Score=29.70 Aligned_cols=18 Identities=33% Similarity=0.925 Sum_probs=16.4
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 019948 4 RCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~~~ 21 (333)
+|-.||..||-+|.|+..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 689999999999999974
No 73
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=76.41 E-value=1.1 Score=32.72 Aligned_cols=20 Identities=40% Similarity=1.001 Sum_probs=17.8
Q ss_pred cccCCCCCCCCCCCCCCCCc
Q 019948 3 RRCSHCSHNGHNSRTCPNRG 22 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~g 22 (333)
.+|-.||..||-+|.|+.+.
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC
T ss_pred CeeCCCCCCCCCcCCCcCCC
Confidence 56999999999999999863
No 74
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=74.19 E-value=1.9 Score=31.01 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=13.0
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~ 21 (333)
.+|-.||..||-+|.|++.
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCT
T ss_pred cceeECCCCCCccCcCCCc
Confidence 4577777777777777654
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.06 E-value=6.7 Score=36.76 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHcC--CCChhhhhh-hhcCCCCHHHHHhHHHHHHHH
Q 019948 96 VPWTEEEHRMFLLGLQKLG--KGDWRGIAR-NYVVSRTPTQVASHAQKYFIR 144 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLekyG--kGdWk~IA~-~~V~TRTp~QV~SHAQKYF~r 144 (333)
+.||+-|-++|+.++.+|| .+.|..|++ .=+..|+...|..-++.....
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 5799999999999999999 579999953 236679988887766544433
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=71.65 E-value=1.5 Score=31.00 Aligned_cols=19 Identities=32% Similarity=0.976 Sum_probs=17.1
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~ 21 (333)
..|-.||..||-+|.||.+
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4689999999999999975
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=70.32 E-value=0.9 Score=32.72 Aligned_cols=20 Identities=25% Similarity=0.767 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCCCCCCCC
Q 019948 2 TRRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 2 ~R~CS~c~~~GHnsrtc~~~ 21 (333)
+++|-.|+..||-+|.|+..
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp --------------------
T ss_pred CCccccCCCCCcCHhhCcCC
Confidence 47899999999999999975
No 78
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.78 E-value=2.4 Score=31.10 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=12.7
Q ss_pred cccCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~ 20 (333)
.+|-.||..||-+|.|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 457777777777777774
No 79
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=65.25 E-value=2.6 Score=32.21 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=14.5
Q ss_pred cccCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~ 20 (333)
.+|-.||..||-+|.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 468888888888888885
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.17 E-value=4 Score=29.91 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~ 21 (333)
++|-.|+..||-+|.||..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4688999999999999975
No 81
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=62.57 E-value=12 Score=35.07 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=24.9
Q ss_pred CChhhhhhhhcCCCCHHHHHhHHHHHHHHH
Q 019948 116 GDWRGIARNYVVSRTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 116 GdWk~IA~~~V~TRTp~QV~SHAQKYF~r~ 145 (333)
+-|+.|| .+.+++|...++..+.|+....
T Consensus 172 ~~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 4799999 5999999999999998876544
No 82
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=58.71 E-value=4.9 Score=30.64 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~ 21 (333)
++|-.||..||-+|.||.+
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTG
T ss_pred CccCCcCCcCCccCcCcCC
Confidence 4688999999999999975
No 83
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=57.85 E-value=4.1 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.684 Sum_probs=17.5
Q ss_pred cccCCCCCCCCCCCCCCCCc
Q 019948 3 RRCSHCSHNGHNSRTCPNRG 22 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~g 22 (333)
..|-.||..||=+|.||.+.
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999754
No 84
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.25 E-value=4 Score=29.88 Aligned_cols=20 Identities=35% Similarity=0.966 Sum_probs=17.7
Q ss_pred cccCCCCCCCCCCCCCCCCc
Q 019948 3 RRCSHCSHNGHNSRTCPNRG 22 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~g 22 (333)
..|=-||..||-.+-||+.+
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGGG
T ss_pred CccccCCCcCcccccCCCCC
Confidence 57999999999999999654
No 85
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.13 E-value=4.1 Score=34.58 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=16.4
Q ss_pred cccCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~ 20 (333)
.+|-.||..||-+|.|+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 369999999999999996
No 86
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=54.20 E-value=6.6 Score=31.68 Aligned_cols=17 Identities=29% Similarity=0.997 Sum_probs=10.6
Q ss_pred ccCCCCCCCCCCCCCCC
Q 019948 4 RCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 4 ~CS~c~~~GHnsrtc~~ 20 (333)
.|-.||..||.+|.||.
T Consensus 66 ~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 66 QCTLCKSKKHSKERCPS 82 (124)
T ss_dssp SSSSSCSSCCCTTTCCC
T ss_pred cCCCCCcCCcchhhCCC
Confidence 46666666666666664
No 87
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=52.59 E-value=5.2 Score=38.28 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHH---------cCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHhhhccccCCCcc
Q 019948 96 VPWTEEEHRMFLLGLQK---------LGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSL 157 (333)
Q Consensus 96 ~~WTeEEH~~FL~GLek---------yGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~~~krkrR~Sl 157 (333)
.+=.+.+...|..-|+- +|+|.||-+- -.||++||...|...++-+|+++..+.
T Consensus 195 ~pi~d~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~f 257 (317)
T 4g0a_A 195 KPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVK--------YSSVANHADRVYATFKSNVKTGVNNDF 257 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTEEEECCSSSSEEEEE--------GGGHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhccCCCcch
Confidence 46667776777766653 6899999876 579999999999999988776654433
No 88
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=50.58 E-value=4.7 Score=38.51 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=25.9
Q ss_pred cCCCChhhhhhhhcCCCCHHHHHhHHHHHHHHHhhhccccCCCc
Q 019948 113 LGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSS 156 (333)
Q Consensus 113 yGkGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~~~krkrR~S 156 (333)
+|+|.||-+- -.||++||...|...++-+|+++..+
T Consensus 218 HGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~ 253 (312)
T 2gu0_A 218 HGKRHWRLVL--------HSQLMSHAERLDRKIKSDKKHGRQFS 253 (312)
T ss_dssp SSSSEEEEEE--------GGGHHHHHHHHHHHHHCCC-------
T ss_pred cCCccEEEEe--------hHHhhhhHHHHHHHHhhhhhcCCCcc
Confidence 6899999876 57999999999999998877665433
No 89
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=49.61 E-value=5 Score=31.34 Aligned_cols=19 Identities=26% Similarity=0.816 Sum_probs=16.5
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPNR 21 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~~ 21 (333)
..|-.|+..||-+|.||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999963
No 90
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=46.62 E-value=9.7 Score=30.65 Aligned_cols=18 Identities=39% Similarity=1.171 Sum_probs=12.7
Q ss_pred cccCCCCCCCCCCCCCCC
Q 019948 3 RRCSHCSHNGHNSRTCPN 20 (333)
Q Consensus 3 R~CS~c~~~GHnsrtc~~ 20 (333)
+.|-.|+..||.+|.||+
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 457777777777777776
No 91
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=38.61 E-value=44 Score=26.21 Aligned_cols=45 Identities=9% Similarity=0.164 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcC------CCChhhhhhhhcCCCC---HHHHHhHHHHHHHHHhh
Q 019948 103 HRMFLLGLQKLG------KGDWRGIARNYVVSRT---PTQVASHAQKYFIRQSN 147 (333)
Q Consensus 103 H~~FL~GLekyG------kGdWk~IA~~~V~TRT---p~QV~SHAQKYF~r~~~ 147 (333)
+.+|..-.+.=| .+.|+.|++.+--..+ ..+++.|+.||..-...
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 556655443333 3589999975543333 47888888888665543
No 92
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1
Probab=34.88 E-value=16 Score=28.49 Aligned_cols=14 Identities=36% Similarity=1.039 Sum_probs=11.5
Q ss_pred CCcccCCCC---CCCCC
Q 019948 1 MTRRCSHCS---HNGHN 14 (333)
Q Consensus 1 m~R~CS~c~---~~GHn 14 (333)
|+|+|--|| ..|+|
T Consensus 6 Msr~C~itGK~~~~Gn~ 22 (77)
T 2jz6_A 6 MAKRCEVCGKAPRSGNT 22 (77)
T ss_dssp CCCCCTTTCCCCCCCCC
T ss_pred eeeeeeecCCccccCCe
Confidence 899999999 45655
No 93
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.73 E-value=42 Score=27.05 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCChhhhhhhhcCCCCHHHHHhHHHHHHHHHh
Q 019948 115 KGDWRGIARNYVVSRTPTQVASHAQKYFIRQS 146 (333)
Q Consensus 115 kGdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~ 146 (333)
.+.|+.|++. ++-....+++.|+.||..-..
T Consensus 70 ~~~W~~Va~~-lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 70 TQQWSMVAQR-LQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp TTCHHHHHHH-HTSCCTTHHHHHHHHHHSHHH
T ss_pred cCcHHHHHHH-hCCChHHHHHHHHHHHHHHHH
Confidence 3589999964 444448899999999955443
No 94
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=33.08 E-value=51 Score=26.58 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcC-------CCChhhhhhhhcCCCC---HHHHHhHHHHHHHHHhh
Q 019948 103 HRMFLLGLQKLG-------KGDWRGIARNYVVSRT---PTQVASHAQKYFIRQSN 147 (333)
Q Consensus 103 H~~FL~GLekyG-------kGdWk~IA~~~V~TRT---p~QV~SHAQKYF~r~~~ 147 (333)
+++|..- .+.| .+.|+.|++.+--..+ ..+++.|++||..-...
T Consensus 43 ~~Ly~~V-~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 43 YSLSKIV-VEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHH-HHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHH-HHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4555554 4444 4589999975433222 67899999988655543
No 95
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.64 E-value=48 Score=27.04 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=23.7
Q ss_pred CChhhhhhhhcCCC----CHHHHHhHHHHHHHHHhhh
Q 019948 116 GDWRGIARNYVVSR----TPTQVASHAQKYFIRQSNV 148 (333)
Q Consensus 116 GdWk~IA~~~V~TR----Tp~QV~SHAQKYF~r~~~~ 148 (333)
+.|+.|++.+--.. ...+++.|+.||..-....
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~ 110 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECE 110 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 58999997554333 2688999999997666543
No 96
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.86 E-value=1.2e+02 Score=24.69 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCChhhhhhhhcCCCC---HHHHHhHHHHHHHHHhhhc
Q 019948 115 KGDWRGIARNYVVSRT---PTQVASHAQKYFIRQSNVS 149 (333)
Q Consensus 115 kGdWk~IA~~~V~TRT---p~QV~SHAQKYF~r~~~~~ 149 (333)
.+.|+.|++.+--..+ ..+++.|++||..-.....
T Consensus 63 ~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 63 DRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFL 100 (122)
T ss_dssp TTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 4589999974433222 4689999999977665443
No 97
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=28.47 E-value=48 Score=27.36 Aligned_cols=33 Identities=9% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCChhhhhhhhcCCC----CHHHHHhHHHHHHHHHhh
Q 019948 115 KGDWRGIARNYVVSR----TPTQVASHAQKYFIRQSN 147 (333)
Q Consensus 115 kGdWk~IA~~~V~TR----Tp~QV~SHAQKYF~r~~~ 147 (333)
.+.|+.|++.+--.+ ...+++.|+.||..-...
T Consensus 63 ~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 63 LKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp TTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 359999997553333 357899999999776654
No 98
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=25.16 E-value=47 Score=27.32 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.9
Q ss_pred CChhhhhhhhcCCCCHHHHHhHHHHHHHHHhh
Q 019948 116 GDWRGIARNYVVSRTPTQVASHAQKYFIRQSN 147 (333)
Q Consensus 116 GdWk~IA~~~V~TRTp~QV~SHAQKYF~r~~~ 147 (333)
+.|+.|++.+ +--...+++.|+.||..-...
T Consensus 70 k~W~~Va~~l-g~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQRL-QISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH-CCChHHHHHHHHHHHHHHHHH
Confidence 5899999744 444489999999999776654
No 99
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=23.72 E-value=86 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=22.4
Q ss_pred CChhhhhhhhcCCC---CHHHHHhHHHHHHHHHhhh
Q 019948 116 GDWRGIARNYVVSR---TPTQVASHAQKYFIRQSNV 148 (333)
Q Consensus 116 GdWk~IA~~~V~TR---Tp~QV~SHAQKYF~r~~~~ 148 (333)
+.|+.|++.+--.. ...+++.|+.||+.-....
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 59999997543322 2468888888886665543
No 100
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=22.59 E-value=47 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=21.0
Q ss_pred CChhhhhhhhcCC----CCHHHHHhHHHHHHHHH
Q 019948 116 GDWRGIARNYVVS----RTPTQVASHAQKYFIRQ 145 (333)
Q Consensus 116 GdWk~IA~~~V~T----RTp~QV~SHAQKYF~r~ 145 (333)
+.|+.|++.+--. -...+++.|++||..-.
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5999999755432 23578999999885443
No 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=21.35 E-value=39 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=20.5
Q ss_pred CChhhhhhhhcCCC---CHHHHHhHHHHHHHHH
Q 019948 116 GDWRGIARNYVVSR---TPTQVASHAQKYFIRQ 145 (333)
Q Consensus 116 GdWk~IA~~~V~TR---Tp~QV~SHAQKYF~r~ 145 (333)
+.|+.|++.+--.. ...+++.|++||+.-.
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 59999997554322 2568888888885543
No 102
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.20 E-value=1.1e+02 Score=25.67 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=22.1
Q ss_pred CChhhhhhhhcCCC----CHHHHHhHHHHHHHHHh
Q 019948 116 GDWRGIARNYVVSR----TPTQVASHAQKYFIRQS 146 (333)
Q Consensus 116 GdWk~IA~~~V~TR----Tp~QV~SHAQKYF~r~~ 146 (333)
+.|+.|++.+--.. ...+++.|++||+.-..
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 59999997554433 25789999999855544
Done!