BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019949
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 149/293 (50%), Gaps = 25/293 (8%)
Query: 37 LPLIDLARLNFWSFDQWIEEMAEAASQWGFFQVMNHGIPQKVFESMRKEQMKIFHQPFRK 96
P+I L ++N E + +A WGFF+++NHGIP++V +++ K ++K
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXT----KGHYKK 59
Query: 97 KSEQNFMNLSADSYRWGNPKATSLRQFLWSEAF---HIPVADISKLEDESINPRSSIGLF 153
EQ F L A G + W F H+P+++IS++ D R F
Sbjct: 60 CXEQRFKELVASKALEG--VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDF 117
Query: 154 ATKAANLAERLAEYLAHNLRIKSSYFRDNCLPSSS---YLRMNRYPPCPPSFEVLGLIPH 210
A + LAE L + L NL ++ Y ++ S +++ YPPCP + GL H
Sbjct: 118 AKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177
Query: 211 TDSDFLTLLYQD-HVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVV 269
TD+ + LL+QD V GLQL KDG+W+ V P ++VN+GD + ++NG YKSV HRV+
Sbjct: 178 TDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVI 237
Query: 270 SHPKVERYSVAYFYCPSYEAVI---------ESTENIIKPAIYRKFSFREYKQ 313
+ R S+A FY P +AVI E+ EN +Y KF F +Y +
Sbjct: 238 AQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEEN---KQVYPKFVFDDYXK 287
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 19/297 (6%)
Query: 36 ELPLIDLARLNFWSFDQ-----WIEEMAEAASQWGFFQVMNHGIPQKVFESMRKEQMKIF 90
++P IDL N S D+ IEE+ +A+ WG ++NHGIP + E ++K + F
Sbjct: 45 QVPTIDLK--NIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 102
Query: 91 HQPFRKKSEQNFMNLSADSYRWGNPKATSLRQFLWSEAFHIPVADISKLEDESINPRS-- 148
+K + + +G+ A + L E + +A + D SI P++
Sbjct: 103 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 162
Query: 149 ----SIGLFATKAANLAERLAEYLAHNLRIKSSYFRDNCLPSSSYL---RMNRYPPCPPS 201
+ +A LA ++ + L+ L ++ L ++N YP CP
Sbjct: 163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 222
Query: 202 FEVLGLIPHTDSDFLTLLYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVY 261
LG+ HTD LT + + V GLQL +G+W++ K PD +++++GD + LSNG Y
Sbjct: 223 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKY 282
Query: 262 KSVEHRVVSHPKVERYSVAYFYC--PSYEAVIESTENIIKPAIYRKFSFREYKQQIQ 316
KS+ HR + + + R S A F C P + V++ ++ KF R + Q I+
Sbjct: 283 KSILHRGLVNKEKVRISWAVF-CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 19/297 (6%)
Query: 36 ELPLIDLARLNFWSFDQ-----WIEEMAEAASQWGFFQVMNHGIPQKVFESMRKEQMKIF 90
++P IDL N S D+ IEE+ +A+ WG ++NHGIP + E ++K + F
Sbjct: 46 QVPTIDLK--NIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 103
Query: 91 HQPFRKKSEQNFMNLSADSYRWGNPKATSLRQFLWSEAFHIPVADISKLEDESINPRS-- 148
+K + + +G+ A + L E + +A + D SI P++
Sbjct: 104 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 149 ----SIGLFATKAANLAERLAEYLAHNLRIKSSYFRDNCLPSSSYL---RMNRYPPCPPS 201
+ +A LA ++ + L+ L ++ L ++N YP CP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 202 FEVLGLIPHTDSDFLTLLYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVY 261
LG+ HTD LT + + V GLQL +G+W++ K PD +++++GD + LSNG Y
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKY 283
Query: 262 KSVEHRVVSHPKVERYSVAYFYC--PSYEAVIESTENIIKPAIYRKFSFREYKQQIQ 316
KS+ HR + + + R S A F C P + V++ ++ KF R + Q I+
Sbjct: 284 KSILHRGLVNKEKVRISWAVF-CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 16/270 (5%)
Query: 36 ELPLIDLARLNFWSFDQ-----WIEEMAEAASQWGFFQVMNHGIPQKVFESMRKEQMKIF 90
++P IDL N S D+ IEE+ +A+ WG ++NHGIP + E ++K + F
Sbjct: 46 QVPTIDLK--NIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFF 103
Query: 91 HQPFRKKSEQNFMNLSADSYRWGNPKATSLRQFLWSEAFHIPVADISKLEDESINPRS-- 148
+K + + +G+ A + L E + +A + D SI P++
Sbjct: 104 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 149 ----SIGLFATKAANLAERLAEYLAHNLRIKSSYFRDNCLPSSSYL---RMNRYPPCPPS 201
+ +A LA ++ + L+ L ++ L ++N YP CP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQP 223
Query: 202 FEVLGLIPHTDSDFLTLLYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVY 261
LG+ HTD LT + + V GLQL +G+W++ K PD ++ ++GD + LSNG Y
Sbjct: 224 ELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKY 283
Query: 262 KSVEHRVVSHPKVERYSVAYFYCPSYEAVI 291
KS+ HR + + + R S A F P + ++
Sbjct: 284 KSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 115/266 (43%), Gaps = 17/266 (6%)
Query: 50 FDQWIEEMAEAASQWGFFQVMNHGIPQKVFESMRKEQMKIFHQPFRKKSEQNFMNLSADS 109
F ++ +E+ + ++GF + ++ + Q ++ F P K + + A
Sbjct: 19 FTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARG 78
Query: 110 Y-RWGNPKATSLRQFLWSEAFHI-----PVADISKLEDESINP------RSSIGLFATKA 157
Y +G A + E +H P +++ P + +
Sbjct: 79 YIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSL 138
Query: 158 ANLAERLAEYLAHNLRIKSSYFRDNCLPSSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLT 217
++ E +A L+++ +F+ +S LR+ YPP P + H D + +T
Sbjct: 139 DGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTIT 198
Query: 218 LLYQDHVGGLQ-LKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHP---- 272
LL GGL+ L +DG+WL + P P L++N+GD + L+N V S HRVV+ P
Sbjct: 199 LLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERR 258
Query: 273 KVERYSVAYFYCPSYEAVIESTENII 298
V RYS +F + + I++ +N +
Sbjct: 259 GVPRYSTPFFLHFASDYEIKTLQNCV 284
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 14/221 (6%)
Query: 59 EAASQWGFFQVMNHGIPQKVFESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKAT 118
E+ + GF + NH I +++ E + E F+ K+E F + D + + T
Sbjct: 20 ESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFXFNRETHDGFFPASISET 77
Query: 119 SLRQFLWSEAFHIPVADISKLEDESINPRSSIGLFATKAANLAERLAE----YLAHNLRI 174
+ + + V ++ D + R++I + KA LA L E Y ++
Sbjct: 78 AKGHTVKDIKEYYHVYPWGRIPD---SLRANILAYYEKANTLASELLEWIETYSPDEIKA 134
Query: 175 KSSYFRDNCLPSS--SYLRMNRYPPCPPSFEVLGL--IPHTDSDFLTLLYQDHVGGLQLK 230
K S + +S + LR+ YPP E + H D + +T+L + GLQ+K
Sbjct: 135 KFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVK 194
Query: 231 -KDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
KDG WL V + +I+N+GD Q S+G + S HRV++
Sbjct: 195 AKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVIN 235
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 HTDSDFLTLLYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVV 269
H D +T+LYQ +V LQ++ + ++ + ++N G L+N YK+ HR V
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-V 272
Query: 270 SHPKVERYSVAYFYCPSYEAVIE 292
ER S+ +F Y++VI+
Sbjct: 273 KWVNAERQSLPFFVNLGYDSVID 295
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 HTDSDFLTLLYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVV 269
H D +T+LYQ +V LQ++ + ++ + ++N G L+N YK+ HR V
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-V 272
Query: 270 SHPKVERYSVAYFYCPSYEAVIE 292
ER S+ +F Y++VI+
Sbjct: 273 KWVNAERQSLPFFVNLGYDSVID 295
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 29/141 (20%)
Query: 168 LAHNLRIKSSYFRDNCLPSSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTLLYQDHVGGL 227
L ++ + YF + LP + +++N PP P F + P TD + + +D GG
Sbjct: 95 LVKDVNDEPPYFINRPLPMQAVVQLN-APPNTPVFTLQARDPDTDHNIHYFIVRDRTGGR 153
Query: 228 QLKKDGRWLSVKPNPDVLIVNVGDLFQ-----------ALSNGVYKSVEHRVVSHPKVER 276
V V+ DLFQ NG K + R S P+ ER
Sbjct: 154 --------FEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNG--KVDDRRFQSTPE-ER 202
Query: 277 YSVA------YFYCPSYEAVI 291
S+ FY PSYEA I
Sbjct: 203 LSIVGGKRAPQFYMPSYEAEI 223
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 29/141 (20%)
Query: 168 LAHNLRIKSSYFRDNCLPSSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTLLYQDHVGGL 227
L ++ + YF + LP + +++N PP P F + P TD + + +D GG
Sbjct: 100 LVKDVNDEPPYFINRPLPMQAVVQLN-APPNTPVFTLQARDPDTDHNIHYFIVRDRTGG- 157
Query: 228 QLKKDGRWLSVKPNPDVLIVNVGDLFQ-----------ALSNGVYKSVEHRVVSHPKVER 276
V V+ DLFQ NG K + R S P+ ER
Sbjct: 158 -------RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNG--KVDDRRFQSTPE-ER 207
Query: 277 YSVA------YFYCPSYEAVI 291
S+ FY PSYEA I
Sbjct: 208 LSIVGGKRAPQFYMPSYEAEI 228
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 31/124 (25%)
Query: 225 GGLQLKKDGRWLSV------------KPNPDVLIVNVGDLFQALSNGV--------YKSV 264
G L KD WL K +P V+I ++G+ NG+ KSV
Sbjct: 421 GPASLAKDSTWLPAHIDRTRRXYERSKNHPSVVIWSLGN---EAGNGINFERTYDWLKSV 477
Query: 265 E-HRVVSHPKVERYSVAYFYCPSYEAVIESTENIIKPAIYRKFSFREYKQQIQEDVRATG 323
E +R V + + E YC Y +V +++ IYR F EY + A G
Sbjct: 478 EKNRPVQYERAEENYNTDIYCRXYRSVDVIRNYVVRKDIYRPFILCEY-------LHAXG 530
Query: 324 NKVG 327
N G
Sbjct: 531 NSCG 534
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 182 NCLPSSSYLRMNRYPPCP----PSFEVLGLIPHTDSDFLTLLYQDHVG----GLQLKKDG 233
+C P LR +P P + L + PH D +TL+ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 182 NCLPSSSYLRMNRYPPCP----PSFEVLGLIPHTDSDFLTLLYQDHVG----GLQLKKDG 233
+C P LR +P P + L + PH D +TL+ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 182 NCLPSSSYLRMNRYPPCP----PSFEVLGLIPHTDSDFLTLLYQDHVG----GLQLKKDG 233
+C P LR +P P + L + PH D +TL+ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 182 NCLPSSSYLRMNRYPPCP----PSFEVLGLIPHTDSDFLTLLYQDHVG----GLQLKKDG 233
+C P LR +P P + L + PH D +TL+ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 182 NCLPSSSYLRMNRYPPCP----PSFEVLGLIPHTDSDFLTLLYQDHVG----GLQLKKDG 233
+C P LR +P P + L + PH D +TL+ Q LQ + G
Sbjct: 174 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 230
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 231 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 267
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 31/124 (25%)
Query: 225 GGLQLKKDGRWLSV------------KPNPDVLIVNVGDLFQALSNGV--------YKSV 264
G L KD WL+ K +P ++I + G+ NG+ KSV
Sbjct: 425 GPASLAKDSTWLTAHXDRTHRXYERSKNHPAIVIWSQGN---EAGNGINFERTYDWLKSV 481
Query: 265 EH-RVVSHPKVERYSVAYFYCPSYEAVIESTENIIKPAIYRKFSFREYKQQIQEDVRATG 323
E R V + + E YC Y +V E + K IYR F EY + A G
Sbjct: 482 EKGRPVQYERAELNYNTDIYCRXYRSVDEIKAYVGKKDIYRPFILCEY-------LHAXG 534
Query: 324 NKVG 327
N G
Sbjct: 535 NSCG 538
>pdb|2X0S|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 100 QNFMNLSADSYRWGNPKATSLRQFLWSEAFHIPVADISKLEDESINPRSSIGLFATKAAN 159
Q F + A WGNP+AT R+ ++ + +IN RS+ G+ +++ +
Sbjct: 208 QLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTAVNVQAMVFGNINDRSATGVAFSRSPS 267
Query: 160 LAER--LAEYLAH 170
E EYL +
Sbjct: 268 TGENFFFGEYLVN 280
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 5 EPPFEETYPTL-FHNSTARANDKTLFAVDKECELPLIDLARLNFWSFDQWIEE------- 56
EP +T +L F R D ++ +E +I A+ W F+++IE+
Sbjct: 31 EPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA 90
Query: 57 -MAEAASQWGFFQVMNHGIPQKVFESMRK 84
M E QW + + KV E+ +K
Sbjct: 91 LMKEKEDQWSLVNLTPEELVNKVIEAKQK 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,897,194
Number of Sequences: 62578
Number of extensions: 383501
Number of successful extensions: 859
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 21
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)