Query 019951
Match_columns 333
No_of_seqs 252 out of 1976
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 5.6E-37 1.2E-41 287.9 21.2 238 72-319 1-240 (258)
2 PRK00448 polC DNA polymerase I 99.8 1.3E-20 2.8E-25 209.4 5.3 206 71-318 331-559 (1437)
3 PF02811 PHP: PHP domain; Int 99.7 3.4E-17 7.5E-22 142.1 15.6 78 75-158 1-80 (175)
4 smart00481 POLIIIAc DNA polyme 99.7 2.3E-17 5.1E-22 123.8 8.4 63 76-138 1-65 (67)
5 PRK09248 putative hydrolase; V 99.7 4.9E-16 1.1E-20 144.6 15.5 162 72-317 2-186 (246)
6 PRK05672 dnaE2 error-prone DNA 99.6 7.8E-16 1.7E-20 168.1 12.7 119 73-208 4-124 (1046)
7 PRK07135 dnaE DNA polymerase I 99.6 2.2E-15 4.8E-20 162.7 9.0 90 74-175 3-94 (973)
8 TIGR00594 polc DNA-directed DN 99.5 1E-13 2.2E-18 151.6 15.2 121 74-207 1-128 (1022)
9 PRK08392 hypothetical protein; 99.5 5.2E-13 1.1E-17 122.2 17.5 200 75-326 1-213 (215)
10 PRK09532 DNA polymerase III su 99.5 2.7E-14 5.8E-19 153.8 10.1 101 73-175 2-105 (874)
11 PRK07279 dnaE DNA polymerase I 99.5 5.2E-14 1.1E-18 152.8 12.0 94 73-174 1-96 (1034)
12 PRK05673 dnaE DNA polymerase I 99.5 5.5E-14 1.2E-18 154.8 11.5 122 74-207 2-127 (1135)
13 PRK05898 dnaE DNA polymerase I 99.5 1.2E-13 2.6E-18 148.8 10.5 94 73-176 1-96 (971)
14 TIGR00375 conserved hypothetic 99.5 7.5E-13 1.6E-17 130.2 14.3 74 75-159 2-88 (374)
15 PRK06826 dnaE DNA polymerase I 99.5 1.5E-13 3.2E-18 151.3 10.4 124 72-208 3-132 (1151)
16 PRK07374 dnaE DNA polymerase I 99.5 1.7E-13 3.8E-18 150.8 10.2 101 73-175 2-107 (1170)
17 COG0587 DnaE DNA polymerase II 99.5 2.3E-13 5E-18 148.6 11.0 101 73-176 3-105 (1139)
18 PRK06920 dnaE DNA polymerase I 99.4 1.1E-12 2.4E-17 143.7 15.7 116 73-208 2-119 (1107)
19 COG1387 HIS2 Histidinol phosph 99.4 2.2E-12 4.7E-17 120.1 13.4 204 73-325 1-224 (237)
20 PRK07945 hypothetical protein; 99.4 9.1E-12 2E-16 121.5 17.9 205 71-322 94-319 (335)
21 PRK07328 histidinol-phosphatas 99.4 7.9E-12 1.7E-16 118.0 16.9 210 73-321 2-256 (269)
22 TIGR01405 polC_Gram_pos DNA po 99.4 5.3E-13 1.2E-17 147.5 9.4 71 71-141 101-173 (1213)
23 PRK08609 hypothetical protein; 99.3 4E-11 8.6E-16 124.5 18.4 200 73-323 334-554 (570)
24 PRK06361 hypothetical protein; 99.3 3E-11 6.4E-16 109.9 14.7 61 79-139 1-69 (212)
25 PRK00912 ribonuclease P protei 99.3 4.9E-11 1.1E-15 110.6 13.3 64 72-138 1-65 (237)
26 COG2176 PolC DNA polymerase II 99.3 3E-11 6.5E-16 129.8 12.6 71 71-141 333-405 (1444)
27 TIGR01856 hisJ_fam histidinol 99.2 3.2E-10 7E-15 106.2 17.0 205 75-312 1-251 (253)
28 PRK08123 histidinol-phosphatas 99.2 3.3E-10 7.2E-15 107.1 17.1 211 73-313 2-265 (270)
29 PRK05588 histidinol-phosphatas 99.2 2.1E-09 4.6E-14 100.6 19.9 207 74-318 1-242 (255)
30 PRK07329 hypothetical protein; 99.0 1.1E-08 2.5E-13 95.5 15.5 206 75-320 2-243 (246)
31 COG1379 PHP family phosphoeste 98.8 2.3E-08 5E-13 95.5 9.5 79 72-159 2-91 (403)
32 PRK06740 histidinol-phosphatas 98.7 9.4E-07 2E-11 86.2 16.7 70 252-322 240-320 (331)
33 COG4464 CapC Capsular polysacc 97.3 0.0033 7.1E-08 57.7 11.6 66 75-140 2-85 (254)
34 COG0084 TatD Mg-dependent DNas 92.9 6 0.00013 37.5 15.6 61 72-134 1-61 (256)
35 PF12228 DUF3604: Protein of u 91.7 0.16 3.4E-06 53.2 3.6 46 73-118 7-72 (592)
36 cd03309 CmuC_like CmuC_like. P 89.9 1 2.2E-05 44.0 7.2 73 251-325 198-272 (321)
37 TIGR00010 hydrolase, TatD fami 87.4 1.2 2.6E-05 40.5 5.6 61 75-137 2-62 (252)
38 PRK08508 biotin synthase; Prov 81.1 7.3 0.00016 37.0 8.1 75 253-330 77-164 (279)
39 PRK15108 biotin synthase; Prov 80.6 7.5 0.00016 38.2 8.2 71 253-326 113-195 (345)
40 PF01026 TatD_DNase: TatD rela 80.5 3.3 7.1E-05 38.6 5.4 62 75-137 1-62 (255)
41 PRK06256 biotin synthase; Vali 80.2 7.1 0.00015 37.8 7.8 72 253-326 128-211 (336)
42 cd02930 DCR_FMN 2,4-dienoyl-Co 79.9 4.6 9.9E-05 39.7 6.4 25 251-275 77-103 (353)
43 COG1902 NemA NADH:flavin oxido 78.5 5.3 0.00012 39.7 6.4 25 250-274 82-108 (363)
44 PRK13125 trpA tryptophan synth 77.8 5.3 0.00011 37.2 5.8 62 75-138 75-138 (244)
45 PRK13111 trpA tryptophan synth 75.8 25 0.00055 33.2 9.9 36 280-317 108-143 (258)
46 PRK10812 putative DNAse; Provi 74.5 7.4 0.00016 36.8 5.9 54 73-127 2-58 (265)
47 cd01306 PhnM PhnM is believed 74.5 90 0.002 30.5 18.2 180 72-317 79-273 (325)
48 PRK11449 putative deoxyribonuc 74.2 7.7 0.00017 36.5 6.0 53 73-126 4-56 (258)
49 COG5016 Pyruvate/oxaloacetate 73.5 15 0.00032 37.3 7.8 130 89-296 99-231 (472)
50 cd01310 TatD_DNAse TatD like p 73.5 9.2 0.0002 34.6 6.2 60 75-136 2-61 (251)
51 TIGR00262 trpA tryptophan synt 73.3 27 0.00059 32.9 9.4 61 253-313 104-164 (256)
52 PRK10425 DNase TatD; Provision 72.4 8.7 0.00019 36.2 5.8 52 75-127 2-53 (258)
53 PF02679 ComA: (2R)-phospho-3- 71.3 9.7 0.00021 35.9 5.8 68 253-320 56-130 (244)
54 PRK10605 N-ethylmaleimide redu 70.2 10 0.00022 37.5 6.1 23 252-274 80-104 (362)
55 PRK13523 NADPH dehydrogenase N 70.2 10 0.00022 37.3 5.9 25 251-275 81-107 (337)
56 PRK09997 hydroxypyruvate isome 69.5 7.7 0.00017 35.9 4.8 46 279-326 18-65 (258)
57 TIGR00539 hemN_rel putative ox 68.6 20 0.00043 35.2 7.7 72 253-326 70-161 (360)
58 TIGR03849 arch_ComA phosphosul 68.6 17 0.00038 34.1 6.8 69 253-321 43-118 (237)
59 cd03308 CmuA_CmuC_like CmuA_Cm 68.6 23 0.0005 35.2 8.2 72 251-326 255-329 (378)
60 cd04747 OYE_like_5_FMN Old yel 68.6 13 0.00027 37.1 6.3 24 251-274 78-103 (361)
61 cd04735 OYE_like_4_FMN Old yel 67.7 11 0.00024 37.0 5.7 24 251-274 78-103 (353)
62 TIGR00433 bioB biotin syntheta 67.3 20 0.00043 33.8 7.1 59 255-317 102-172 (296)
63 cd04726 KGPDC_HPS 3-Keto-L-gul 66.9 24 0.00052 31.2 7.2 35 257-291 70-105 (202)
64 cd04734 OYE_like_3_FMN Old yel 66.9 13 0.00029 36.4 6.0 23 252-274 78-102 (343)
65 TIGR03234 OH-pyruv-isom hydrox 66.2 8.6 0.00019 35.4 4.4 41 279-321 17-57 (254)
66 COG0159 TrpA Tryptophan syntha 65.9 49 0.0011 31.6 9.4 39 279-319 112-150 (265)
67 PRK07094 biotin synthase; Prov 65.7 31 0.00067 33.1 8.3 63 253-317 105-179 (323)
68 PRK13347 coproporphyrinogen II 65.4 29 0.00063 35.3 8.3 64 253-318 122-203 (453)
69 PRK09856 fructoselysine 3-epim 64.3 17 0.00036 33.8 5.9 43 279-321 16-65 (275)
70 PLN02411 12-oxophytodienoate r 62.5 19 0.00041 36.1 6.2 14 284-297 173-186 (391)
71 TIGR03551 F420_cofH 7,8-dideme 62.3 24 0.00053 34.4 6.9 74 253-326 105-203 (343)
72 PRK00115 hemE uroporphyrinogen 62.1 9.3 0.0002 37.3 3.9 70 251-325 224-296 (346)
73 PRK06294 coproporphyrinogen II 62.1 30 0.00065 34.2 7.6 90 237-330 63-168 (370)
74 PRK12581 oxaloacetate decarbox 61.7 53 0.0012 33.9 9.4 43 90-132 107-150 (468)
75 TIGR01464 hemE uroporphyrinoge 61.6 14 0.00031 35.8 5.1 70 251-325 218-290 (338)
76 PLN02389 biotin synthase 61.4 39 0.00085 33.8 8.2 72 252-326 154-237 (379)
77 cd02931 ER_like_FMN Enoate red 60.8 18 0.00039 36.1 5.8 21 252-272 84-106 (382)
78 cd02803 OYE_like_FMN_family Ol 60.7 12 0.00027 35.8 4.5 23 252-274 78-102 (327)
79 TIGR00542 hxl6Piso_put hexulos 60.6 24 0.00053 32.9 6.4 46 279-324 19-73 (279)
80 cd02932 OYE_YqiM_FMN Old yello 60.4 20 0.00043 34.9 5.9 23 252-274 78-102 (336)
81 PF00724 Oxidored_FMN: NADH:fl 60.4 20 0.00043 35.1 5.9 23 252-274 81-105 (341)
82 PRK07228 N-ethylammeline chlor 60.2 26 0.00056 35.1 6.9 63 73-137 57-148 (445)
83 cd01295 AdeC Adenine deaminase 59.8 15 0.00032 36.9 5.0 60 73-134 10-74 (422)
84 TIGR00538 hemN oxygen-independ 59.5 36 0.00077 34.6 7.7 73 253-327 121-213 (455)
85 PF01208 URO-D: Uroporphyrinog 59.1 15 0.00032 35.4 4.8 46 251-298 220-265 (343)
86 COG4770 Acetyl/propionyl-CoA c 59.0 20 0.00044 37.8 5.8 74 247-323 57-158 (645)
87 PRK07945 hypothetical protein; 58.4 22 0.00048 34.8 5.8 62 254-317 211-285 (335)
88 cd02933 OYE_like_FMN Old yello 58.0 22 0.00048 34.8 5.8 22 253-274 79-102 (338)
89 cd04733 OYE_like_2_FMN Old yel 57.6 23 0.00051 34.5 5.9 24 251-274 82-107 (338)
90 COG0502 BioB Biotin synthase a 57.5 30 0.00066 34.1 6.5 67 251-319 118-195 (335)
91 CHL00200 trpA tryptophan synth 57.5 78 0.0017 30.0 9.2 63 253-315 108-170 (263)
92 PRK07360 FO synthase subunit 2 57.4 26 0.00057 34.7 6.2 77 253-330 127-228 (371)
93 PRK09249 coproporphyrinogen II 57.4 45 0.00097 33.9 8.1 63 253-317 121-201 (453)
94 PRK05904 coproporphyrinogen II 57.3 55 0.0012 32.2 8.5 86 237-326 61-164 (353)
95 PTZ00170 D-ribulose-5-phosphat 57.0 56 0.0012 30.1 8.0 41 255-296 54-95 (228)
96 cd00717 URO-D Uroporphyrinogen 56.4 15 0.00033 35.5 4.3 70 251-325 215-287 (335)
97 PF10566 Glyco_hydro_97: Glyco 56.4 26 0.00057 33.6 5.8 70 249-318 71-152 (273)
98 PRK08446 coproporphyrinogen II 56.3 59 0.0013 31.9 8.4 72 253-326 70-159 (350)
99 cd02929 TMADH_HD_FMN Trimethyl 56.2 28 0.0006 34.6 6.2 22 253-274 85-108 (370)
100 PRK13210 putative L-xylulose 5 55.6 32 0.00069 31.9 6.2 42 279-320 19-69 (284)
101 TIGR01463 mtaA_cmuA methyltran 55.5 19 0.00041 34.9 4.8 66 251-320 220-287 (340)
102 PRK13209 L-xylulose 5-phosphat 54.8 45 0.00097 31.1 7.1 43 279-321 24-75 (283)
103 PRK08392 hypothetical protein; 54.5 33 0.00071 31.1 6.0 60 254-317 107-175 (215)
104 PRK07328 histidinol-phosphatas 54.2 25 0.00053 33.1 5.2 61 255-317 145-222 (269)
105 PRK05628 coproporphyrinogen II 53.8 65 0.0014 31.7 8.4 88 237-328 64-171 (375)
106 PF07894 DUF1669: Protein of u 53.5 54 0.0012 31.6 7.4 35 72-107 118-152 (284)
107 PRK07379 coproporphyrinogen II 52.8 55 0.0012 32.7 7.7 90 237-330 71-180 (400)
108 PRK04302 triosephosphate isome 52.7 64 0.0014 29.4 7.6 37 282-318 78-116 (223)
109 TIGR00640 acid_CoA_mut_C methy 52.6 31 0.00067 29.2 5.1 42 85-126 37-80 (132)
110 PRK05660 HemN family oxidoredu 52.5 73 0.0016 31.6 8.5 89 237-329 63-171 (378)
111 TIGR01501 MthylAspMutase methy 51.7 50 0.0011 28.2 6.2 41 88-128 39-81 (134)
112 COG2355 Zn-dependent dipeptida 51.7 26 0.00056 34.3 5.0 46 253-298 204-261 (313)
113 PRK08599 coproporphyrinogen II 51.6 83 0.0018 31.0 8.7 75 252-328 69-163 (377)
114 COG1387 HIS2 Histidinol phosph 51.5 39 0.00085 31.4 6.0 64 253-317 113-187 (237)
115 PTZ00413 lipoate synthase; Pro 51.4 2.8E+02 0.006 28.2 13.9 64 254-317 281-363 (398)
116 PLN02433 uroporphyrinogen deca 51.2 26 0.00057 34.2 5.0 71 251-326 217-290 (345)
117 PRK13125 trpA tryptophan synth 51.0 50 0.0011 30.6 6.7 59 253-311 90-151 (244)
118 cd01292 metallo-dependent_hydr 50.4 16 0.00034 32.6 3.1 64 74-137 1-90 (275)
119 COG0826 Collagenase and relate 49.9 26 0.00056 34.7 4.8 47 252-298 50-101 (347)
120 TIGR00290 MJ0570_dom MJ0570-re 49.5 74 0.0016 29.5 7.5 70 255-325 48-120 (223)
121 COG1038 PycA Pyruvate carboxyl 48.4 42 0.00092 37.0 6.3 72 249-323 65-164 (1149)
122 cd03465 URO-D_like The URO-D _ 48.4 30 0.00065 33.0 4.9 66 251-320 208-275 (330)
123 TIGR02631 xylA_Arthro xylose i 48.1 34 0.00075 34.2 5.4 45 279-323 35-88 (382)
124 PRK09989 hypothetical protein; 47.4 39 0.00085 31.2 5.4 40 279-320 18-57 (258)
125 PRK09358 adenosine deaminase; 47.4 18 0.00039 35.0 3.2 29 73-104 11-39 (340)
126 PRK08207 coproporphyrinogen II 47.0 91 0.002 32.3 8.4 72 253-326 237-330 (488)
127 TIGR00510 lipA lipoate synthas 46.9 2.8E+02 0.006 26.9 15.8 64 254-317 194-275 (302)
128 TIGR03700 mena_SCO4494 putativ 46.4 85 0.0018 30.8 7.8 74 253-326 114-212 (351)
129 PF09692 Arb1: Argonaute siRNA 46.4 7.8 0.00017 39.1 0.5 22 290-311 276-298 (396)
130 PRK06267 hypothetical protein; 45.9 42 0.00091 33.0 5.6 73 252-326 95-177 (350)
131 PRK08609 hypothetical protein; 45.8 49 0.0011 34.9 6.3 57 260-317 454-519 (570)
132 PRK08208 coproporphyrinogen II 45.8 1.2E+02 0.0026 30.6 9.0 76 253-330 110-206 (430)
133 PRK15452 putative protease; Pr 44.8 1.1E+02 0.0023 31.4 8.4 70 252-331 47-121 (443)
134 PRK09248 putative hydrolase; V 44.5 1.5E+02 0.0032 27.3 8.7 41 280-321 176-219 (246)
135 cd04724 Tryptophan_synthase_al 44.4 54 0.0012 30.4 5.8 65 253-317 93-157 (242)
136 PRK01060 endonuclease IV; Prov 44.3 56 0.0012 30.4 5.9 40 279-318 15-62 (281)
137 TIGR02336 1,3-beta-galactosyl- 44.0 58 0.0013 35.1 6.4 41 253-293 292-332 (719)
138 smart00481 POLIIIAc DNA polyme 43.8 60 0.0013 23.4 4.9 39 278-317 17-55 (67)
139 PF00962 A_deaminase: Adenosin 43.5 22 0.00048 34.0 3.2 28 73-103 3-30 (331)
140 TIGR03550 F420_cofG 7,8-dideme 42.8 67 0.0014 31.1 6.4 23 304-326 150-173 (322)
141 PRK09057 coproporphyrinogen II 42.6 97 0.0021 30.7 7.6 90 237-330 60-168 (380)
142 COG1809 (2R)-phospho-3-sulfola 42.5 68 0.0015 30.1 5.9 66 253-320 62-136 (258)
143 PRK00278 trpC indole-3-glycero 42.3 1.1E+02 0.0024 28.8 7.6 64 254-319 100-163 (260)
144 PRK08445 hypothetical protein; 42.3 69 0.0015 31.6 6.4 75 253-327 108-207 (348)
145 PRK05927 hypothetical protein; 41.8 25 0.00053 34.8 3.2 52 279-331 147-213 (350)
146 cd02072 Glm_B12_BD B12 binding 41.7 94 0.002 26.4 6.3 41 88-128 37-79 (128)
147 PTZ00124 adenosine deaminase; 41.4 24 0.00051 35.1 3.0 29 73-104 36-64 (362)
148 PRK05799 coproporphyrinogen II 41.4 1.2E+02 0.0025 29.9 7.9 50 266-317 88-149 (374)
149 PRK05718 keto-hydroxyglutarate 40.9 81 0.0018 28.9 6.3 61 253-316 5-65 (212)
150 COG0329 DapA Dihydrodipicolina 40.7 1.2E+02 0.0026 29.2 7.7 62 256-317 62-131 (299)
151 cd05017 SIS_PGI_PMI_1 The memb 40.6 66 0.0014 26.1 5.2 41 84-130 53-93 (119)
152 cd00331 IGPS Indole-3-glycerol 40.4 1.1E+02 0.0024 27.4 7.1 63 255-319 62-124 (217)
153 cd07943 DRE_TIM_HOA 4-hydroxy- 40.4 1.6E+02 0.0034 27.5 8.3 64 253-318 61-127 (263)
154 TIGR03699 mena_SCO4550 menaqui 39.8 70 0.0015 31.0 6.0 51 279-330 143-208 (340)
155 PRK14042 pyruvate carboxylase 39.6 1.6E+02 0.0035 31.4 9.0 49 90-138 98-147 (596)
156 PRK12331 oxaloacetate decarbox 39.2 1.8E+02 0.0038 29.9 9.0 44 90-133 98-142 (448)
157 PF13704 Glyco_tranf_2_4: Glyc 39.2 95 0.0021 23.7 5.7 33 90-122 7-39 (97)
158 TIGR01210 conserved hypothetic 38.8 2.1E+02 0.0045 27.7 9.1 70 254-325 91-178 (313)
159 PRK08444 hypothetical protein; 38.7 1E+02 0.0022 30.6 6.9 75 253-327 115-214 (353)
160 TIGR01212 radical SAM protein, 38.7 87 0.0019 30.1 6.4 88 236-325 81-186 (302)
161 PRK09234 fbiC FO synthase; Rev 38.1 90 0.0019 34.7 7.1 49 279-327 628-691 (843)
162 PTZ00170 D-ribulose-5-phosphat 38.1 1.3E+02 0.0028 27.7 7.2 57 72-138 65-123 (228)
163 PRK15447 putative protease; Pr 38.1 1.8E+02 0.004 27.9 8.5 69 251-331 48-118 (301)
164 PRK10027 cryptic adenine deami 38.0 51 0.0011 35.0 5.0 62 73-136 85-151 (588)
165 COG2185 Sbm Methylmalonyl-CoA 37.9 2.5E+02 0.0055 24.4 8.4 73 248-320 47-123 (143)
166 PF01726 LexA_DNA_bind: LexA D 37.8 67 0.0014 23.8 4.3 43 186-228 15-57 (65)
167 cd00951 KDGDH 5-dehydro-4-deox 37.7 2.6E+02 0.0055 26.6 9.4 53 264-317 68-126 (289)
168 cd00950 DHDPS Dihydrodipicolin 37.3 1.4E+02 0.0031 27.9 7.6 54 264-317 68-127 (284)
169 PF13653 GDPD_2: Glycerophosph 37.3 33 0.00072 21.7 2.2 19 279-297 10-28 (30)
170 TIGR02967 guan_deamin guanine 37.2 1E+02 0.0022 30.4 6.8 40 95-136 97-138 (401)
171 PRK13957 indole-3-glycerol-pho 37.1 1.4E+02 0.0029 28.3 7.2 61 258-320 95-155 (247)
172 TIGR00674 dapA dihydrodipicoli 36.8 1.4E+02 0.0031 28.1 7.5 54 264-317 66-125 (285)
173 PRK06582 coproporphyrinogen II 36.6 1.4E+02 0.0031 29.8 7.8 89 237-330 67-175 (390)
174 COG0296 GlgB 1,4-alpha-glucan 36.5 70 0.0015 34.3 5.7 52 279-330 168-242 (628)
175 COG0399 WecE Predicted pyridox 36.4 1.3E+02 0.0029 30.1 7.4 78 238-317 71-150 (374)
176 cd07948 DRE_TIM_HCS Saccharomy 36.3 66 0.0014 30.4 5.1 34 279-312 25-58 (262)
177 TIGR03564 F420_MSMEG_4879 F420 36.3 77 0.0017 29.5 5.5 46 92-137 3-49 (265)
178 PRK13813 orotidine 5'-phosphat 36.1 1.8E+02 0.0038 26.1 7.7 62 256-317 72-140 (215)
179 COG2100 Predicted Fe-S oxidore 36.0 1E+02 0.0022 30.7 6.3 54 248-301 172-226 (414)
180 PRK10657 isoaspartyl dipeptida 35.9 1.1E+02 0.0025 29.7 6.9 59 73-133 57-127 (388)
181 cd05014 SIS_Kpsf KpsF-like pro 35.9 44 0.00096 27.0 3.4 30 84-113 57-86 (128)
182 COG0036 Rpe Pentose-5-phosphat 35.8 1.4E+02 0.0031 27.7 7.0 57 254-310 74-130 (220)
183 TIGR00289 conserved hypothetic 35.6 1.4E+02 0.0031 27.6 7.1 73 251-325 45-120 (222)
184 PRK13307 bifunctional formalde 35.5 1.4E+02 0.003 30.1 7.4 63 255-318 215-278 (391)
185 PRK05588 histidinol-phosphatas 35.2 45 0.00097 30.9 3.7 63 254-317 127-210 (255)
186 TIGR00262 trpA tryptophan synt 34.8 1.4E+02 0.0029 28.2 6.9 34 253-289 129-163 (256)
187 TIGR03351 PhnX-like phosphonat 34.6 3.2E+02 0.0069 24.0 11.2 128 191-326 28-171 (220)
188 COG4724 Endo-beta-N-acetylgluc 34.5 82 0.0018 32.0 5.4 19 253-272 129-147 (553)
189 cd01292 metallo-dependent_hydr 34.5 2.1E+02 0.0046 25.2 7.9 37 288-325 114-154 (275)
190 PRK03170 dihydrodipicolinate s 34.5 1.5E+02 0.0033 27.9 7.3 54 264-317 69-128 (292)
191 cd03174 DRE_TIM_metallolyase D 34.4 2.3E+02 0.0049 25.9 8.3 63 252-317 52-129 (265)
192 PRK08195 4-hyroxy-2-oxovalerat 34.1 3.2E+02 0.0068 26.8 9.6 64 253-318 64-130 (337)
193 TIGR03217 4OH_2_O_val_ald 4-hy 33.9 2.9E+02 0.0063 27.1 9.3 50 267-318 80-129 (333)
194 PRK07329 hypothetical protein; 33.7 1E+02 0.0023 28.5 5.9 63 254-317 128-209 (246)
195 cd08562 GDPD_EcUgpQ_like Glyce 33.7 84 0.0018 28.2 5.2 41 254-298 189-229 (229)
196 cd02071 MM_CoA_mut_B12_BD meth 33.5 92 0.002 25.5 5.0 25 85-109 34-58 (122)
197 PRK02261 methylaspartate mutas 33.5 1.5E+02 0.0032 25.2 6.3 40 87-126 40-81 (137)
198 cd08582 GDPD_like_2 Glyceropho 33.3 87 0.0019 28.4 5.3 43 253-299 190-232 (233)
199 PF00682 HMGL-like: HMGL-like 33.1 71 0.0015 29.0 4.6 37 279-315 17-53 (237)
200 cd08564 GDPD_GsGDE_like Glycer 33.1 1E+02 0.0022 28.7 5.8 45 253-298 212-257 (265)
201 cd00952 CHBPH_aldolase Trans-o 32.9 1.5E+02 0.0032 28.6 7.0 52 264-315 76-133 (309)
202 PRK09722 allulose-6-phosphate 32.9 1.9E+02 0.004 27.0 7.4 58 253-310 71-129 (229)
203 cd07940 DRE_TIM_IPMS 2-isoprop 32.9 83 0.0018 29.5 5.1 35 279-313 23-57 (268)
204 PLN02428 lipoic acid synthase 32.3 5.2E+02 0.011 25.7 14.4 65 253-317 233-315 (349)
205 COG0757 AroQ 3-dehydroquinate 32.2 91 0.002 27.1 4.7 52 254-305 54-109 (146)
206 PRK04147 N-acetylneuraminate l 32.2 1.6E+02 0.0035 27.9 7.1 54 264-317 72-131 (293)
207 KOG2422 Uncharacterized conser 32.1 16 0.00035 38.5 0.2 25 85-112 229-253 (665)
208 cd00408 DHDPS-like Dihydrodipi 32.0 1.7E+02 0.0037 27.3 7.1 53 265-317 66-124 (281)
209 TIGR01163 rpe ribulose-phospha 32.0 1.7E+02 0.0037 25.7 6.9 51 253-303 68-118 (210)
210 PRK08255 salicylyl-CoA 5-hydro 31.8 90 0.002 34.0 5.9 23 252-274 476-501 (765)
211 PRK12677 xylose isomerase; Pro 31.8 92 0.002 31.2 5.5 40 279-318 34-82 (384)
212 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.7 72 0.0016 30.2 4.5 38 280-317 95-132 (275)
213 TIGR01430 aden_deam adenosine 31.7 44 0.00095 32.1 3.1 30 73-105 2-31 (324)
214 KOG2422 Uncharacterized conser 31.6 15 0.00033 38.7 -0.1 8 29-36 112-120 (665)
215 PRK09228 guanine deaminase; Pr 31.5 1.3E+02 0.0028 30.3 6.6 39 97-137 124-164 (433)
216 cd08609 GDPD_GDE3 Glycerophosp 31.5 76 0.0017 30.9 4.7 53 254-317 235-287 (315)
217 cd03307 Mta_CmuA_like MtaA_Cmu 31.4 48 0.001 31.9 3.3 70 251-326 211-283 (326)
218 COG4822 CbiK Cobalamin biosynt 31.3 1.3E+02 0.0028 28.3 5.8 54 243-297 169-236 (265)
219 PRK08005 epimerase; Validated 31.3 1.9E+02 0.0041 26.6 7.0 71 245-319 39-109 (210)
220 COG0800 Eda 2-keto-3-deoxy-6-p 31.1 1.4E+02 0.0031 27.6 6.1 51 254-305 4-54 (211)
221 TIGR00970 leuA_yeast 2-isoprop 30.9 1.1E+02 0.0024 32.3 6.1 36 279-314 51-86 (564)
222 PRK14847 hypothetical protein; 30.9 92 0.002 30.7 5.2 36 279-314 57-92 (333)
223 TIGR03128 RuMP_HxlA 3-hexulose 30.8 1.9E+02 0.0042 25.5 7.0 54 256-309 68-123 (206)
224 PF09508 Lact_bio_phlase: Lact 30.7 55 0.0012 35.1 3.8 41 253-293 289-329 (716)
225 COG0546 Gph Predicted phosphat 30.4 4E+02 0.0087 23.8 12.7 130 188-327 28-171 (220)
226 cd00954 NAL N-Acetylneuraminic 30.4 2.7E+02 0.0058 26.4 8.2 52 264-315 69-126 (288)
227 PF01120 Alpha_L_fucos: Alpha- 30.3 83 0.0018 30.9 4.8 54 83-138 86-160 (346)
228 PF09339 HTH_IclR: IclR helix- 30.2 64 0.0014 22.3 3.0 47 181-228 3-49 (52)
229 PTZ00372 endonuclease 4-like p 30.2 68 0.0015 32.6 4.3 53 74-129 130-191 (413)
230 PF00046 Homeobox: Homeobox do 30.1 1.3E+02 0.0029 20.7 4.7 21 23-43 1-21 (57)
231 cd08563 GDPD_TtGDE_like Glycer 30.0 99 0.0022 28.0 5.0 41 254-298 190-230 (230)
232 cd07944 DRE_TIM_HOA_like 4-hyd 30.0 2.3E+02 0.0049 26.7 7.6 49 267-317 75-123 (266)
233 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.9 61 0.0013 26.0 3.3 34 79-112 51-84 (126)
234 PRK09875 putative hydrolase; P 29.8 3.2E+02 0.007 26.3 8.7 74 26-129 130-205 (292)
235 PF00296 Bac_luciferase: Lucif 29.7 1.2E+02 0.0027 28.3 5.8 48 91-138 26-80 (307)
236 COG0134 TrpC Indole-3-glycerol 29.5 68 0.0015 30.5 3.9 65 254-320 96-160 (254)
237 PTZ00246 proteasome subunit al 29.5 42 0.00092 31.2 2.5 38 74-112 4-42 (253)
238 PRK02083 imidazole glycerol ph 29.1 2.4E+02 0.0052 26.1 7.5 28 85-112 150-177 (253)
239 PRK03620 5-dehydro-4-deoxygluc 29.0 4.5E+02 0.0098 25.1 9.6 53 264-317 75-133 (303)
240 COG1082 IolE Sugar phosphate i 29.0 1.8E+02 0.0038 26.6 6.6 47 86-132 13-63 (274)
241 TIGR02313 HpaI-NOT-DapA 2,4-di 29.0 2.6E+02 0.0056 26.7 7.9 53 263-315 67-125 (294)
242 cd08567 GDPD_SpGDE_like Glycer 28.9 1.2E+02 0.0027 27.7 5.5 42 254-299 221-262 (263)
243 TIGR03239 GarL 2-dehydro-3-deo 28.7 1.4E+02 0.0031 27.9 5.9 61 251-314 46-108 (249)
244 CHL00200 trpA tryptophan synth 28.7 2.3E+02 0.005 26.9 7.3 32 254-288 134-166 (263)
245 cd08579 GDPD_memb_like Glycero 28.6 1.1E+02 0.0024 27.4 5.1 41 254-298 180-220 (220)
246 PRK11858 aksA trans-homoaconit 28.6 1.3E+02 0.0027 30.0 5.8 35 279-313 29-63 (378)
247 PRK06740 histidinol-phosphatas 28.4 91 0.002 30.5 4.7 27 85-111 58-84 (331)
248 PRK10558 alpha-dehydro-beta-de 28.3 1.5E+02 0.0032 27.9 6.0 61 251-314 53-115 (256)
249 cd01320 ADA Adenosine deaminas 28.2 57 0.0012 31.2 3.2 29 73-104 3-31 (325)
250 TIGR02090 LEU1_arch isopropylm 28.1 1E+02 0.0023 30.4 5.1 35 279-313 25-59 (363)
251 PLN02417 dihydrodipicolinate s 28.0 2.6E+02 0.0056 26.4 7.7 50 264-313 69-124 (280)
252 COG0710 AroD 3-dehydroquinate 28.0 3.8E+02 0.0082 25.1 8.5 81 233-314 83-171 (231)
253 cd03413 CbiK_C Anaerobic cobal 27.9 1.5E+02 0.0033 23.8 5.2 52 243-296 35-98 (103)
254 PRK05473 hypothetical protein; 27.6 1.6E+02 0.0034 23.4 5.0 31 217-249 27-57 (86)
255 PRK07114 keto-hydroxyglutarate 27.6 2.9E+02 0.0063 25.6 7.6 51 253-304 5-55 (222)
256 PRK08883 ribulose-phosphate 3- 27.5 2.9E+02 0.0064 25.3 7.7 58 253-310 70-127 (220)
257 COG2185 Sbm Methylmalonyl-CoA 27.3 3.3E+02 0.0072 23.6 7.4 49 252-305 79-129 (143)
258 cd03753 proteasome_alpha_type_ 27.3 57 0.0012 29.4 2.9 36 76-112 2-38 (213)
259 PRK08203 hydroxydechloroatrazi 27.3 1.7E+02 0.0037 29.3 6.7 62 73-136 60-157 (451)
260 PRK00971 glutaminase; Provisio 27.2 6E+02 0.013 24.8 12.7 27 291-317 273-304 (307)
261 PRK06380 metal-dependent hydro 27.2 1.8E+02 0.004 28.7 6.8 60 73-136 55-142 (418)
262 cd01309 Met_dep_hydrolase_C Me 27.2 2.5E+02 0.0053 27.4 7.6 52 73-133 193-244 (359)
263 COG2102 Predicted ATPases of P 27.0 2E+02 0.0044 26.8 6.4 64 256-320 103-177 (223)
264 COG0613 Predicted metal-depend 26.8 53 0.0011 31.0 2.7 66 250-317 97-167 (258)
265 PRK06806 fructose-bisphosphate 26.6 3.1E+02 0.0068 26.2 7.9 69 257-328 67-139 (281)
266 COG1243 ELP3 Histone acetyltra 26.5 1.9E+02 0.0042 30.0 6.7 77 252-330 169-262 (515)
267 COG2066 GlsA Glutaminase [Amin 26.5 6.2E+02 0.013 24.8 10.2 132 178-317 134-306 (309)
268 cd07941 DRE_TIM_LeuA3 Desulfob 26.5 1.2E+02 0.0025 28.7 5.0 33 279-311 23-55 (273)
269 PRK08123 histidinol-phosphatas 26.4 1.4E+02 0.0031 27.9 5.6 62 255-317 157-243 (270)
270 COG0656 ARA1 Aldo/keto reducta 26.3 2.3E+02 0.0049 27.3 6.9 86 234-322 126-218 (280)
271 COG2108 Uncharacterized conser 26.2 2.5E+02 0.0053 27.9 7.1 77 245-322 116-198 (353)
272 PRK09389 (R)-citramalate synth 26.1 1.4E+02 0.0031 30.9 5.9 35 279-313 27-61 (488)
273 TIGR03128 RuMP_HxlA 3-hexulose 26.1 2.2E+02 0.0047 25.2 6.4 51 73-133 55-108 (206)
274 PRK06361 hypothetical protein; 26.1 2.9E+02 0.0063 24.5 7.3 57 257-317 106-162 (212)
275 COG1737 RpiR Transcriptional r 26.0 55 0.0012 31.0 2.7 26 86-111 189-214 (281)
276 PF13380 CoA_binding_2: CoA bi 25.8 1.3E+02 0.0029 24.5 4.6 40 89-131 67-106 (116)
277 PRK08745 ribulose-phosphate 3- 25.8 3.1E+02 0.0068 25.3 7.5 75 245-323 42-117 (223)
278 PF03659 Glyco_hydro_71: Glyco 25.7 99 0.0021 31.0 4.5 52 267-318 1-62 (386)
279 cd08556 GDPD Glycerophosphodie 25.6 1.5E+02 0.0033 25.2 5.3 38 254-295 150-187 (189)
280 PRK13306 ulaD 3-keto-L-gulonat 25.5 3.4E+02 0.0073 24.7 7.7 60 256-316 46-106 (216)
281 PRK13936 phosphoheptose isomer 25.3 76 0.0016 28.4 3.3 23 89-111 126-148 (197)
282 TIGR00683 nanA N-acetylneurami 25.3 2.1E+02 0.0046 27.2 6.5 52 264-315 69-126 (290)
283 cd08555 PI-PLCc_GDPD_SF Cataly 25.3 1.3E+02 0.0027 26.3 4.7 40 253-295 138-177 (179)
284 PRK10128 2-keto-3-deoxy-L-rham 25.3 2E+02 0.0043 27.4 6.3 58 252-313 56-113 (267)
285 cd02067 B12-binding B12 bindin 25.1 2.5E+02 0.0055 22.4 6.2 29 84-112 33-61 (119)
286 PLN03228 methylthioalkylmalate 25.1 1.6E+02 0.0034 30.8 5.9 36 279-314 109-144 (503)
287 PRK06552 keto-hydroxyglutarate 25.1 2.6E+02 0.0056 25.6 6.8 59 255-316 5-63 (213)
288 cd08574 GDPD_GDE_2_3_6 Glycero 25.1 1.5E+02 0.0032 27.6 5.3 50 241-294 200-249 (252)
289 PF07905 PucR: Purine cataboli 25.0 1.9E+02 0.0041 23.7 5.5 39 279-317 62-100 (123)
290 TIGR01088 aroQ 3-dehydroquinat 24.9 1.3E+02 0.0028 26.1 4.4 46 254-299 53-101 (141)
291 cd04724 Tryptophan_synthase_al 24.9 2.3E+02 0.0051 26.2 6.6 41 253-296 118-159 (242)
292 PLN02428 lipoic acid synthase 24.9 2.9E+02 0.0063 27.5 7.5 41 71-120 53-93 (349)
293 cd05005 SIS_PHI Hexulose-6-pho 24.6 82 0.0018 27.4 3.4 27 87-113 88-114 (179)
294 cd00945 Aldolase_Class_I Class 24.6 2.5E+02 0.0053 24.0 6.4 15 282-296 71-85 (201)
295 cd07939 DRE_TIM_NifV Streptomy 24.5 1.4E+02 0.0031 27.8 5.1 33 279-311 23-55 (259)
296 cd04795 SIS SIS domain. SIS (S 24.5 83 0.0018 23.2 2.9 22 87-108 60-81 (87)
297 cd01303 GDEase Guanine deamina 24.4 2.6E+02 0.0057 28.0 7.3 39 96-136 119-159 (429)
298 PF08288 PIGA: PIGA (GPI ancho 24.4 76 0.0016 25.4 2.7 43 62-112 43-85 (90)
299 cd05710 SIS_1 A subgroup of th 24.2 93 0.002 25.3 3.4 31 83-113 56-86 (120)
300 TIGR02660 nifV_homocitr homoci 24.2 1.3E+02 0.0029 29.6 5.1 35 279-313 26-60 (365)
301 TIGR03559 F420_Rv3520c probabl 24.2 1.6E+02 0.0036 28.4 5.6 47 91-137 16-63 (325)
302 PLN02591 tryptophan synthase 24.1 1.3E+02 0.0029 28.3 4.8 42 90-132 95-136 (250)
303 TIGR03249 KdgD 5-dehydro-4-deo 24.1 2.5E+02 0.0054 26.7 6.8 53 264-317 73-131 (296)
304 cd07945 DRE_TIM_CMS Leptospira 24.0 1.3E+02 0.0029 28.6 4.9 33 280-312 23-56 (280)
305 COG0735 Fur Fe2+/Zn2+ uptake r 24.0 4.5E+02 0.0098 22.3 7.9 71 186-273 8-78 (145)
306 PF00834 Ribul_P_3_epim: Ribul 24.0 1.2E+02 0.0027 27.4 4.5 42 255-297 47-88 (201)
307 cd00465 URO-D_CIMS_like The UR 23.7 1.4E+02 0.0031 27.9 5.1 45 251-298 186-230 (306)
308 PRK01076 L-rhamnose isomerase; 23.7 1.6E+02 0.0035 29.9 5.5 55 263-317 56-127 (419)
309 PRK09058 coproporphyrinogen II 23.6 3.9E+02 0.0085 27.1 8.5 86 237-326 119-224 (449)
310 cd07942 DRE_TIM_LeuA Mycobacte 23.6 1.5E+02 0.0033 28.4 5.2 36 279-314 26-61 (284)
311 PF00218 IGPS: Indole-3-glycer 23.4 2.3E+02 0.005 26.8 6.3 64 255-320 99-162 (254)
312 TIGR03841 F420_Rv3093c probabl 23.4 1.6E+02 0.0035 28.0 5.3 49 91-139 13-62 (301)
313 PRK09311 bifunctional 3,4-dihy 23.3 7.9E+02 0.017 24.9 12.4 48 90-137 145-197 (402)
314 TIGR03127 RuMP_HxlB 6-phospho 23.3 91 0.002 27.0 3.4 26 88-113 86-111 (179)
315 cd01310 TatD_DNAse TatD like p 23.3 3.4E+02 0.0074 24.2 7.3 48 74-130 123-170 (251)
316 PF00701 DHDPS: Dihydrodipicol 23.2 2.5E+02 0.0054 26.4 6.6 54 264-317 69-128 (289)
317 PF13580 SIS_2: SIS domain; PD 23.1 82 0.0018 26.4 2.9 24 85-108 114-137 (138)
318 COG2141 Coenzyme F420-dependen 23.1 2.1E+02 0.0046 27.2 6.2 99 90-192 18-132 (336)
319 PRK14055 aromatic amino acid h 23.0 37 0.00081 33.6 0.9 64 258-328 197-266 (362)
320 PF06135 DUF965: Bacterial pro 22.8 1.4E+02 0.0031 23.3 3.8 40 217-262 24-63 (79)
321 PF13594 Amidohydro_5: Amidohy 22.7 70 0.0015 23.2 2.2 32 73-104 35-67 (68)
322 PRK05481 lipoyl synthase; Prov 22.6 3.7E+02 0.0081 25.6 7.7 17 301-317 209-225 (289)
323 PF14871 GHL6: Hypothetical gl 22.6 1.7E+02 0.0037 24.7 4.8 49 89-137 1-67 (132)
324 PF01380 SIS: SIS domain SIS d 22.5 87 0.0019 25.0 2.9 30 83-112 62-91 (131)
325 PRK08883 ribulose-phosphate 3- 22.5 4.5E+02 0.0098 24.1 7.9 43 251-296 93-135 (220)
326 TIGR01549 HAD-SF-IA-v1 haloaci 22.5 4.4E+02 0.0094 21.6 7.5 75 251-326 67-142 (154)
327 cd08583 PI-PLCc_GDPD_SF_unchar 22.4 1.8E+02 0.004 26.4 5.4 41 254-298 195-235 (237)
328 TIGR03234 OH-pyruv-isom hydrox 22.3 2.4E+02 0.0053 25.6 6.2 44 87-131 13-56 (254)
329 PLN02522 ATP citrate (pro-S)-l 22.2 1.4E+02 0.0031 31.9 5.1 71 250-322 66-139 (608)
330 PRK09856 fructoselysine 3-epim 22.2 2.1E+02 0.0045 26.3 5.8 46 86-131 11-64 (275)
331 cd08601 GDPD_SaGlpQ_like Glyce 22.1 1.6E+02 0.0034 27.1 4.9 42 254-299 208-249 (256)
332 TIGR03560 F420_Rv1855c probabl 21.9 2.2E+02 0.0047 26.0 5.7 24 89-112 14-37 (227)
333 PF13344 Hydrolase_6: Haloacid 21.7 2.5E+02 0.0055 22.2 5.4 42 250-291 16-57 (101)
334 PRK06552 keto-hydroxyglutarate 21.7 1.3E+02 0.0029 27.5 4.2 47 86-137 73-119 (213)
335 PRK12677 xylose isomerase; Pro 21.7 2.1E+02 0.0045 28.7 5.9 43 87-129 30-82 (384)
336 PRK00748 1-(5-phosphoribosyl)- 21.7 4.6E+02 0.0099 23.5 7.8 52 88-139 30-86 (233)
337 PLN02161 beta-amylase 21.6 1.4E+02 0.0031 31.2 4.7 40 279-318 120-169 (531)
338 TIGR00977 LeuA_rel 2-isopropyl 21.3 1.6E+02 0.0034 30.9 5.2 35 279-313 26-60 (526)
339 cd03174 DRE_TIM_metallolyase D 21.3 4E+02 0.0086 24.2 7.4 49 91-139 77-140 (265)
340 PLN02803 beta-amylase 21.3 1.9E+02 0.0042 30.4 5.6 39 280-318 111-159 (548)
341 cd05006 SIS_GmhA Phosphoheptos 21.3 90 0.0019 27.1 2.9 22 89-110 116-137 (177)
342 PRK07583 cytosine deaminase-li 21.2 2.3E+02 0.0049 28.5 6.2 59 73-131 226-290 (438)
343 PF01041 DegT_DnrJ_EryC1: DegT 21.2 2.6E+02 0.0056 27.2 6.4 76 240-317 64-141 (363)
344 TIGR01178 ade adenine deaminas 21.2 1.3E+02 0.0028 31.7 4.5 61 73-135 51-116 (552)
345 smart00518 AP2Ec AP endonuclea 21.1 3.2E+02 0.007 25.0 6.8 64 253-317 12-98 (273)
346 TIGR02660 nifV_homocitr homoci 21.1 4.1E+02 0.009 26.1 7.9 20 280-299 76-95 (365)
347 PLN02321 2-isopropylmalate syn 21.0 1.4E+02 0.0031 32.1 4.7 36 279-314 111-146 (632)
348 cd01911 proteasome_alpha prote 20.9 91 0.002 27.9 2.9 37 76-113 2-39 (209)
349 TIGR01975 isoAsp_dipep isoaspa 20.9 8.4E+02 0.018 24.3 16.0 59 73-133 57-127 (389)
350 PF15333 TAF1D: TATA box-bindi 20.8 42 0.0009 30.9 0.7 15 89-103 90-104 (217)
351 PRK07084 fructose-bisphosphate 20.8 5.9E+02 0.013 25.0 8.7 73 254-328 73-150 (321)
352 COG0119 LeuA Isopropylmalate/h 20.8 1.8E+02 0.0039 29.5 5.3 35 279-313 27-61 (409)
353 cd01298 ATZ_TRZ_like TRZ/ATZ f 20.7 2E+02 0.0044 27.9 5.6 61 73-136 57-146 (411)
354 PRK09997 hydroxypyruvate isome 20.7 2.7E+02 0.0059 25.5 6.2 46 85-131 12-57 (258)
355 PTZ00413 lipoate synthase; Pro 20.5 6E+02 0.013 25.8 8.7 18 89-106 110-127 (398)
356 TIGR00423 radical SAM domain p 20.5 1.8E+02 0.0038 27.9 5.0 65 251-316 104-187 (309)
357 PRK00366 ispG 4-hydroxy-3-meth 20.5 5.4E+02 0.012 25.8 8.3 56 73-139 83-142 (360)
358 PRK15076 alpha-galactosidase; 20.5 1.5E+02 0.0033 30.1 4.7 88 237-330 111-198 (431)
359 TIGR01422 phosphonatase phosph 20.4 6.4E+02 0.014 22.8 10.9 73 249-326 100-182 (253)
360 TIGR03314 Se_ssnA putative sel 20.4 2.7E+02 0.0059 28.0 6.6 39 97-137 116-159 (441)
361 TIGR00735 hisF imidazoleglycer 20.4 3E+02 0.0064 25.5 6.4 52 87-138 29-85 (254)
362 PF00290 Trp_syntA: Tryptophan 20.3 1.4E+02 0.0031 28.3 4.2 42 90-132 104-145 (259)
363 COG2108 Uncharacterized conser 20.2 5.4E+02 0.012 25.6 8.1 65 254-318 97-166 (353)
364 PRK06687 chlorohydrolase; Vali 20.1 2.2E+02 0.0047 28.3 5.7 61 73-135 59-150 (419)
365 cd08561 GDPD_cytoplasmic_ScUgp 20.1 1.7E+02 0.0038 26.7 4.7 42 254-299 202-243 (249)
366 PF02310 B12-binding: B12 bind 20.1 1.6E+02 0.0036 23.2 4.1 26 85-110 35-60 (121)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=100.00 E-value=5.6e-37 Score=287.92 Aligned_cols=238 Identities=36% Similarity=0.470 Sum_probs=218.7
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhCCCEEEEEEEEeeeecCCCCCCCCc
Q 019951 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (333)
Q Consensus 72 ~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~-~~a~~~gi~~i~GiEis~~~~~~~~~~~~~ 150 (333)
||++||||||++|||.++|.+++++|.+.|++++|||||||+.|+.++. ......++.+|||+|+++.+ .+..
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~------~~~~ 74 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTW------GGHI 74 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeeccc------CCeE
Confidence 5889999999999999999999999999999999999999999999987 55566899999999999998 7889
Q ss_pred EEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccchH
Q 019951 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (333)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~~~ 230 (333)
+|+++++++. ....+.+.+.+....|.++.+++.+++....++..++.+...++.+ .+.+.|+++.+++.++..+.
T Consensus 75 ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~ 150 (258)
T COG0613 75 IHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR 150 (258)
T ss_pred EEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence 9999999764 2445888899999999999999999999999999999888887654 46799999999999999999
Q ss_pred HHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEEEEeCCCCCCCc-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Q 019951 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL 309 (333)
Q Consensus 231 ~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~ 309 (333)
.+.|++|+..++++|+++.+.+.++.|..|+.+||++|+|||.+|..+ ..++..+.+.|.||||+++..+++.+.....
T Consensus 151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~ 230 (258)
T COG0613 151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLA 230 (258)
T ss_pred HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHH
Confidence 999999999999999999999999999999999999999999998765 6789999999999999999999999999999
Q ss_pred HHHhhcCCCc
Q 019951 310 QDGSLFSLLP 319 (333)
Q Consensus 310 ~~a~~~~l~~ 319 (333)
.+++++++++
T Consensus 231 ~~~k~~~~l~ 240 (258)
T COG0613 231 LLAKEFGLLA 240 (258)
T ss_pred HHHHHhhhhh
Confidence 9999999755
No 2
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.81 E-value=1.3e-20 Score=209.40 Aligned_cols=206 Identities=24% Similarity=0.335 Sum_probs=146.7
Q ss_pred CceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCC
Q 019951 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESE 148 (333)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~ 148 (333)
...++|||+||++| ||.++|++++++|+++|+++||||||+++.|++++.+++++.||++|+|+|+++.+ .
T Consensus 331 ~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~------~- 403 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVD------D- 403 (1437)
T ss_pred ccceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEec------c-
Confidence 35689999999999 99999999999999999999999999999999999999999999999999999975 2
Q ss_pred CcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccc
Q 019951 149 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (333)
Q Consensus 149 ~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~ 228 (333)
.+|+ +|+.+ ...|.. ...++--++..|++..++++.+++. ++++.|.+.
T Consensus 404 -~~~i-v~~~~-----~~~L~~------------~~~VVfDLETTGL~~~~deIIEIgA------------V~V~~G~ii 452 (1437)
T PRK00448 404 -GVPI-VYNEV-----DRDLKD------------ATYVVFDVETTGLSAVYDEIIEIGA------------VKIKNGEII 452 (1437)
T ss_pred -ceeE-EecCC-----chhhcc------------CcEEEEEhhhcCCCCchhhhheeee------------EEEeCCeEe
Confidence 2455 57753 112211 1234445566677777777655532 222333221
Q ss_pred hHHHHHHHhhcCCCCc-------------ccCCCCCCHHHHHHHHHH-hCCEEEEeCCCCCCCc--HHH-----HHHHHH
Q 019951 229 NLKQAFARYLYDGGPA-------------YSTGSEPLAEVAVQLIHR-TGGLAVLAHPWALKNP--AAI-----IRKLKD 287 (333)
Q Consensus 229 ~~~~~f~~yl~~~~~~-------------yv~~~~~~~eevI~~I~~-aGGvaVLAHP~~~~~~--~~l-----i~~l~~ 287 (333)
+.|+.|+.++.+. ++. ..+++++|++.+++ .||.+++|||..++.. ... ++.+..
T Consensus 453 ---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~ 528 (1437)
T PRK00448 453 ---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKN 528 (1437)
T ss_pred ---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccc
Confidence 3455555544322 222 45789999999999 7999999999976532 011 112334
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 019951 288 VGLHGLEVYRSDGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 288 ~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~ 318 (333)
.+||++|+++..++......+..+|++||+.
T Consensus 529 ~~IDTLelar~l~p~~k~~kL~~LAk~lGL~ 559 (1437)
T PRK00448 529 PVIDTLELSRFLYPELKSHRLNTLAKKFGVE 559 (1437)
T ss_pred cceeHHHHHHHHcCccccccHHHHHHHcCCC
Confidence 5678999887766555556778888888874
No 3
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.75 E-value=3.4e-17 Score=142.11 Aligned_cols=78 Identities=36% Similarity=0.674 Sum_probs=68.7
Q ss_pred EceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCcEE
Q 019951 75 FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVH 152 (333)
Q Consensus 75 ~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~vH 152 (333)
+||||||.|| ||..+|++++++|++.|++.+|||||+++.++.++.+.+++.+|++++|+|+.... ....+|
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~------~~~~~~ 74 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFE------RNDPFD 74 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHH------HTTTEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeecccc------ccchhH
Confidence 6999999999 99999999999999999999999999999999999999999999999999996443 456678
Q ss_pred EEEeec
Q 019951 153 ILAYYS 158 (333)
Q Consensus 153 iL~y~~ 158 (333)
++.+..
T Consensus 75 ~~i~~~ 80 (175)
T PF02811_consen 75 YIIGSV 80 (175)
T ss_dssp EEEEEG
T ss_pred HHHHHh
Confidence 777764
No 4
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.72 E-value=2.3e-17 Score=123.77 Aligned_cols=63 Identities=44% Similarity=0.699 Sum_probs=61.4
Q ss_pred ceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEee
Q 019951 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 76 DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~ 138 (333)
|||+||.|| ||..+|++++++|+++|++.+|||||+++.|+.++.+++++.|+++|+|+|+++
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~ 65 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANI 65 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEe
Confidence 799999999 999999999999999999999999999999999999999999999999999986
No 5
>PRK09248 putative hydrolase; Validated
Probab=99.69 E-value=4.9e-16 Score=144.62 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=105.0
Q ss_pred ceEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC-CCCHH------HHHHH-HHhCCCEEEEEEEEeeeecC
Q 019951 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT-MSGIP------EAIET-ARRFGMKIIPGVEISTIFCQ 142 (333)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt-~~g~~------~~~~~-a~~~gi~~i~GiEis~~~~~ 142 (333)
.|++|+|+||.+| ||..++++++++|+++|++.+|||||.. ..+.. .+.+. .+..+|+++.|+|+......
T Consensus 2 ~~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~~~~ 81 (246)
T PRK09248 2 KYPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIKNYD 81 (246)
T ss_pred ccceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEeccccCC
Confidence 3688999999999 8999999999999999999999999985 33321 11111 13368999999999865310
Q ss_pred CCCC----CCCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHH
Q 019951 143 RGSE----SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVA 218 (333)
Q Consensus 143 ~~~~----~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia 218 (333)
...+ .-..++++..+. |..
T Consensus 82 ~~~~~~~~~~~~~D~vi~sv---------------------------------------------------------H~~ 104 (246)
T PRK09248 82 GEIDLPGDMLKKLDIVIAGF---------------------------------------------------------HEP 104 (246)
T ss_pred CcccCCHhHhhhCCEEEEec---------------------------------------------------------ccC
Confidence 0000 000111121111 100
Q ss_pred HHHHHcCccchHHHHHHHhhcCCCCcccCCC-CCCHHHHHHHHHHhCCEEEEeCCCCCCC---cHHHHHHHHHcCCCEEE
Q 019951 219 RAMVEAGHVENLKQAFARYLYDGGPAYSTGS-EPLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLE 294 (333)
Q Consensus 219 ~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~-~~~~eevI~~I~~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIE 294 (333)
.|.+.. ....++++++| ++|++.|||||.++.. ...+++.+++.|+ +||
T Consensus 105 -------------------------~~~~~~~~~~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lE 157 (246)
T PRK09248 105 -------------------------VFAPGDKETNTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALE 157 (246)
T ss_pred -------------------------ccCCcCHHHHHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEE
Confidence 000000 01246778888 8899999999987642 2567788888898 899
Q ss_pred EeCCCC------CHHHHHHHHHHHhhcCC
Q 019951 295 VYRSDG------KLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 295 v~~~~~------~~~~~~~~~~~a~~~~l 317 (333)
+.++.. +......+++++.++|+
T Consensus 158 vN~~~l~~~~~g~~~~~~~~~~~~~~~g~ 186 (246)
T PRK09248 158 INNSSFGHSRKGSEDNCRAIAALCKKAGV 186 (246)
T ss_pred EECCCCccCCCCCcChHHHHHHHHHHcCC
Confidence 987643 22245678888888886
No 6
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=99.64 E-value=7.8e-16 Score=168.09 Aligned_cols=119 Identities=33% Similarity=0.441 Sum_probs=99.5
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCc
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~ 150 (333)
.++||||||.|| ||.++|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++.+.. .+..
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~ 79 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGG 79 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCC
Confidence 478999999999 9999999999999999999999999999999999999999999999999999986411 2346
Q ss_pred EEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCC
Q 019951 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGK 208 (333)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~ 208 (333)
+|+++|..+ +.+|.+|+++.+..+..+. ..+..++++.+.++..+
T Consensus 80 ~hllllAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~p~i~~e~L~~~~~g 124 (1046)
T PRK05672 80 PHLLVLARD--REGYGRLSRLITRARLRAG-----------KGEYRLDLDDLAEPAGG 124 (1046)
T ss_pred ceEEEEEcC--hHHHHHHHHHHHHHHHhCC-----------CCCccccHHHHHhhcCC
Confidence 899999976 5688898888776543211 34567899998877543
No 7
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=99.59 E-value=2.2e-15 Score=162.71 Aligned_cols=90 Identities=26% Similarity=0.414 Sum_probs=81.4
Q ss_pred EEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCcE
Q 019951 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV 151 (333)
Q Consensus 74 ~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~v 151 (333)
+++|||||.|| ||.++|++|+++|+++|++++||||||++.|+.++.++|++.||++|+|+|+++. ...+
T Consensus 3 fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~--------~~~l 74 (973)
T PRK07135 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVE--------NFRF 74 (973)
T ss_pred ccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEec--------CcEE
Confidence 68999999999 9999999999999999999999999999999999999999999999999999864 2457
Q ss_pred EEEEeeccCCCCccHHHHHHHHHH
Q 019951 152 HILAYYSSCGPSKYEELENFLANI 175 (333)
Q Consensus 152 HiL~y~~d~~~~~~~~L~~~l~~~ 175 (333)
|+|+.. ..||.+|+++.+..
T Consensus 75 ~LLAkn----~~GY~nL~kL~S~~ 94 (973)
T PRK07135 75 ILLAKN----YSGYKLLNELSSKK 94 (973)
T ss_pred EEEECC----HHHHHHHHHHHHHH
Confidence 777775 45899999988764
No 8
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=1e-13 Score=151.57 Aligned_cols=121 Identities=27% Similarity=0.322 Sum_probs=94.7
Q ss_pred EEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCC-C----CC
Q 019951 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G----SE 146 (333)
Q Consensus 74 ~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~-~----~~ 146 (333)
+++||+||.|| ||..+|++++++|+++|++++|||||+++.|+.++.+.|++.||++|+|+|+++..+.. . ..
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 47999999999 99999999999999999999999999999999999999999999999999999865221 0 00
Q ss_pred CCCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 019951 147 SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (333)
Q Consensus 147 ~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~ 207 (333)
.+...|++.+..+ ..||.+|+++.+...... ......++++++.++..
T Consensus 81 ~~~~~~l~llAkn--~~Gy~nL~kL~S~a~~~~-----------~~~~p~i~~~~l~~~~~ 128 (1022)
T TIGR00594 81 GKEAYHLILLAKN--NTGYRNLMKLSSLAYLEG-----------FYYKPRIDKELLEEHSE 128 (1022)
T ss_pred cCCCccEEEEeCC--HHHHHHHHHHHHHHHhhC-----------CCCCcccCHHHHHhcCC
Confidence 1223588888765 578999999887654210 00123467788776654
No 9
>PRK08392 hypothetical protein; Provisional
Probab=99.53 E-value=5.2e-13 Score=122.16 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=121.3
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CHH----HHHHHHHhCCCEEEEEEEEeeeecCCCC--
Q 019951 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GIP----EAIETARRFGMKIIPGVEISTIFCQRGS-- 145 (333)
Q Consensus 75 ~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~---g~~----~~~~~a~~~gi~~i~GiEis~~~~~~~~-- 145 (333)
+|+|+||.+|||..+|++++++|.++|++.+|||||..+. .+. ++.+..++.++++++|+|+++.....+.
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~~~~~~~ 80 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPNGVDITD 80 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCCcchhHH
Confidence 5899999999999999999999999999999999998652 111 2333334468999999999875421100
Q ss_pred CCCCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcC
Q 019951 146 ESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAG 225 (333)
Q Consensus 146 ~~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g 225 (333)
..-..++.+......... .+... .....+++.+....+. .++++...
T Consensus 81 ~~~~~~D~vI~SvH~~~~-~~~~~-----------~Y~~~~~~~~~~~~~d--------------vlgH~d~~------- 127 (215)
T PRK08392 81 DFAKKLDYVIASVHEWFG-RPEHH-----------EYIELVKLALMDENVD--------------IIGHFGNS------- 127 (215)
T ss_pred HHHhhCCEEEEEeecCcC-CcHHH-----------HHHHHHHHHHhcCCCC--------------EEeCCCcc-------
Confidence 000112222221110000 00110 1112222222221121 24443110
Q ss_pred ccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEE-EEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 019951 226 HVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA-VLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVG 304 (333)
Q Consensus 226 ~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGva-VLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~ 304 (333)
.+|.. ......++++++++.+.|-.. |-+.+ .+ ....+++.+.++|+. |-+-+..|.+++
T Consensus 128 ---------~~~~~-------~~~~~~~~~i~~~~~~~g~~lEiNt~~-~~-p~~~~l~~~~~~G~~-~~igSDAH~~~~ 188 (215)
T PRK08392 128 ---------FPYIG-------YPSEEELKEILDLAEAYGKAFEISSRY-RV-PDLEFIRECIKRGIK-LTFASDAHRPED 188 (215)
T ss_pred ---------ccCCC-------CchHHHHHHHHHHHHHhCCEEEEeCCC-CC-CCHHHHHHHHHcCCE-EEEeCCCCChHH
Confidence 01111 011245678999999998775 44421 12 225788999999986 878888898877
Q ss_pred H---HHHHHHHhhcCCCccceeecc
Q 019951 305 V---IFTLQDGSLFSLLPLTVLFGH 326 (333)
Q Consensus 305 ~---~~~~~~a~~~~l~~~~~~~~~ 326 (333)
. .++.+++++.||.+..+.|-.
T Consensus 189 vg~~~~a~~~~~~~g~~~~~~~~~~ 213 (215)
T PRK08392 189 VGNVSWSLKVFKKAGGKKEDLLFSE 213 (215)
T ss_pred CCcHHHHHHHHHHcCCCHHHeeccc
Confidence 7 789999999999988887743
No 10
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=99.52 E-value=2.7e-14 Score=153.79 Aligned_cols=101 Identities=30% Similarity=0.373 Sum_probs=84.9
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCC-CCCCC
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRG-SESEE 149 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~-~~~~~ 149 (333)
.+++||+||.|| ||..+|++|+++|++.|++++|||||+++.|..++.++|++.||++|+|+|+++...... .....
T Consensus 2 ~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~ 81 (874)
T PRK09532 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRR 81 (874)
T ss_pred CccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccc
Confidence 478999999999 999999999999999999999999999999999999999999999999999998642110 00122
Q ss_pred cEEEEEeeccCCCCccHHHHHHHHHH
Q 019951 150 PVHILAYYSSCGPSKYEELENFLANI 175 (333)
Q Consensus 150 ~vHiL~y~~d~~~~~~~~L~~~l~~~ 175 (333)
..|++.+..+ ..||.+|+++.+..
T Consensus 82 ~~~lvLLAkN--~~GY~NL~kL~S~a 105 (874)
T PRK09532 82 KYHQVVLAKN--TQGYKNLVKLTTIS 105 (874)
T ss_pred cceeEEEecC--HHHHHHHHHHHhHH
Confidence 4688888764 56899999987653
No 11
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.52 E-value=5.2e-14 Score=152.77 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=84.5
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCc
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~ 150 (333)
|++.||+||.|| ||..+|++|+++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+.. .+..
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~------~~~~ 74 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFV------EEQE 74 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEec------CCCc
Confidence 578999999999 99999999999999999999999999999999999999999999999999999764 2234
Q ss_pred EEEEEeeccCCCCccHHHHHHHHH
Q 019951 151 VHILAYYSSCGPSKYEELENFLAN 174 (333)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~ 174 (333)
.|++.+..+ ..||.+|+++.+.
T Consensus 75 ~~lvlLAkN--~~GY~nL~kL~s~ 96 (1034)
T PRK07279 75 VTLRLIAKN--TQGYKNLLKISTA 96 (1034)
T ss_pred ceEEEEECC--HHHHHHHHHHHHH
Confidence 699988865 5689999998764
No 12
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.51 E-value=5.5e-14 Score=154.77 Aligned_cols=122 Identities=25% Similarity=0.277 Sum_probs=95.3
Q ss_pred EEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCC-C-CCCCC
Q 019951 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEE 149 (333)
Q Consensus 74 ~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~-~-~~~~~ 149 (333)
+++||+||.|| ||.++|++|+++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++.+... . ...+.
T Consensus 2 fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~ 81 (1135)
T PRK05673 2 FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGA 81 (1135)
T ss_pred cccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccC
Confidence 57999999999 99999999999999999999999999999999999999999999999999999875311 0 00122
Q ss_pred cEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 019951 150 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (333)
Q Consensus 150 ~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~ 207 (333)
..|++.+..+ ..||.+|+++.+...... .......++++.+.++..
T Consensus 82 ~~~l~llAkn--~~Gy~nL~kL~S~~~~~~----------~~~~~p~i~~~~L~~~~~ 127 (1135)
T PRK05673 82 YTHLTLLAKN--ETGYRNLFKLSSRAYLEG----------QYGYKPRIDREWLAEHSE 127 (1135)
T ss_pred CCceEEEecC--HHHHHHHHHHHHHHHhcC----------CCCCCcccCHHHHHccCC
Confidence 4588888865 578999999887643210 000123477888877654
No 13
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=99.48 E-value=1.2e-13 Score=148.77 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=84.7
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCc
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~ 150 (333)
|++.|||||.|| ||..+|++|+++|+++|++++|||||+++.|..+|+++|++.||++|.|+|+.+.. ..
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~ 72 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TN 72 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC--------CC
Confidence 578999999999 99999999999999999999999999999999999999999999999999998742 23
Q ss_pred EEEEEeeccCCCCccHHHHHHHHHHH
Q 019951 151 VHILAYYSSCGPSKYEELENFLANIR 176 (333)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~ 176 (333)
.|++.+..+ ..||.+|+++.+...
T Consensus 73 ~~lvLLAkn--~~GY~nL~kLsS~~~ 96 (971)
T PRK05898 73 ATLVLYAKN--YNGYLNLIKISSFIM 96 (971)
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHHH
Confidence 588888764 578999999987654
No 14
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.46 E-value=7.5e-13 Score=130.19 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=59.0
Q ss_pred EceeeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH----HhCCCE------EEEEEEEeeeec
Q 019951 75 FELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFC 141 (333)
Q Consensus 75 ~DLH~HT~~S---DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a----~~~gi~------~i~GiEis~~~~ 141 (333)
+|||+||.+| +..++|+.|+.+|..+|++.||+|||++.. ..+.... +..|+. +++|+|+..
T Consensus 2 aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p~--~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~--- 76 (374)
T TIGR00375 2 ADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSPL--EEGISSGKRELDGGGIRYRSELSIYDEACVDE--- 76 (374)
T ss_pred CccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCch--HHHHhhcccccCCCCeeeccceeecccccccc---
Confidence 6999999988 778999999999999999999999999984 2222222 345666 788888763
Q ss_pred CCCCCCCCcEEEEEeecc
Q 019951 142 QRGSESEEPVHILAYYSS 159 (333)
Q Consensus 142 ~~~~~~~~~vHiL~y~~d 159 (333)
..+||+|+|+.+
T Consensus 77 ------~~~VH~L~~fp~ 88 (374)
T TIGR00375 77 ------SGPIHVLLFMPT 88 (374)
T ss_pred ------CCCceEEEECCC
Confidence 457999999865
No 15
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.46 E-value=1.5e-13 Score=151.30 Aligned_cols=124 Identities=24% Similarity=0.364 Sum_probs=96.2
Q ss_pred ceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCC-CCC--
Q 019951 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-GSE-- 146 (333)
Q Consensus 72 ~~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~-~~~-- 146 (333)
+.++|||+||.|| ||..+|++++++|+++|++++|||||+++.|+.++.+.|++.||++|+|+|+.+..... ...
T Consensus 3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~ 82 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPD 82 (1151)
T ss_pred CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCcccccccc
Confidence 3588999999999 99999999999999999999999999999999999999999999999999999864211 000
Q ss_pred -CCCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCC
Q 019951 147 -SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGK 208 (333)
Q Consensus 147 -~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~ 208 (333)
.....|++.+..+ ..||.+|+++.+...... . .....++++.+.++..+
T Consensus 83 ~~~~~~~l~lLAkn--~~Gy~nL~kL~S~a~~~~----------~-~~~pri~~~~L~~~~~g 132 (1151)
T PRK06826 83 IDNETYHLVLLAKN--ETGYKNLMKIVSKAFTEG----------F-YYKPRVDHELLKEHSEG 132 (1151)
T ss_pred ccCCCceEEEEEcC--cHHHHHHHHHHHHHhccC----------C-cCCccCCHHHHHhhCCC
Confidence 1123588888865 578999999877643210 0 01234778888776543
No 16
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.46 E-value=1.7e-13 Score=150.83 Aligned_cols=101 Identities=31% Similarity=0.427 Sum_probs=84.9
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCC-C--CCC
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G--SES 147 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~-~--~~~ 147 (333)
.+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.+++++|++.||++|+|+|+.+..... + ...
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 378999999999 99999999999999999999999999999999999999999999999999999753210 0 001
Q ss_pred CCcEEEEEeeccCCCCccHHHHHHHHHH
Q 019951 148 EEPVHILAYYSSCGPSKYEELENFLANI 175 (333)
Q Consensus 148 ~~~vHiL~y~~d~~~~~~~~L~~~l~~~ 175 (333)
....|++.+..+ ..||.+|+++.+..
T Consensus 82 ~~~~~l~LLAkN--~~Gy~nL~kL~S~a 107 (1170)
T PRK07374 82 EKRYHLVVLAKN--ATGYKNLVKLTTIS 107 (1170)
T ss_pred cccceEEEEEeC--cHHHHHHHHHHHHH
Confidence 123588888865 57899999988764
No 17
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=2.3e-13 Score=148.58 Aligned_cols=101 Identities=30% Similarity=0.373 Sum_probs=87.7
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCc
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~ 150 (333)
.++.|||||.|| ||..+|++|+++|++.|+.+||||||+++.|..+|+.+|++.||++|.|+|+.+...... .....
T Consensus 3 ~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~~ 81 (1139)
T COG0587 3 SFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRER 81 (1139)
T ss_pred ceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccCC
Confidence 689999999999 999999999999999999999999999999999999999999999999999888642110 12345
Q ss_pred EEEEEeeccCCCCccHHHHHHHHHHH
Q 019951 151 VHILAYYSSCGPSKYEELENFLANIR 176 (333)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~ 176 (333)
.|++.|..+ +.+|.+|+.+++...
T Consensus 82 ~~l~llAkn--~~GY~nL~~LsS~a~ 105 (1139)
T COG0587 82 PHLLLLAKN--NEGYKNLVKLSSIAY 105 (1139)
T ss_pred ccEEEEeCC--HHHHHHHHHHHHHHH
Confidence 899999865 678999999887643
No 18
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.45 E-value=1.1e-12 Score=143.75 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=94.1
Q ss_pred eEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCc
Q 019951 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~ 150 (333)
.++.||+||.|| ||..+|++|+++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+.... ....
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~----~~~~ 77 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE----EEKS 77 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC----CCCc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999975311 1123
Q ss_pred EEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCC
Q 019951 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGK 208 (333)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~ 208 (333)
.|++.+..+ ..||.+|+++.+..... ....++++.+.++..+
T Consensus 78 ~~l~LLAkn--~~Gy~nL~kL~S~~~~~--------------~~p~i~~~~L~~~~~g 119 (1107)
T PRK06920 78 YPLVLLAEN--EIGYQNLLKISSSIMTK--------------SKEGIPKKWLAHYAKG 119 (1107)
T ss_pred ccEEEEeCC--HHHHHHHHHHHHHHHhc--------------CCCCCCHHHHHhhCCC
Confidence 588888764 56899999987654311 1244677777776543
No 19
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=99.42 E-value=2.2e-12 Score=120.09 Aligned_cols=204 Identities=21% Similarity=0.252 Sum_probs=125.5
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CH----H----HHHHHHHhCCCEEEEEEEEeeeec
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GI----P----EAIETARRFGMKIIPGVEISTIFC 141 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~---g~----~----~~~~~a~~~gi~~i~GiEis~~~~ 141 (333)
+++|+|+||.||||..+|.+++++|.+.|++.+|||||-... .. . ++....+...++++.|+|++...+
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~ 80 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD 80 (237)
T ss_pred CCcccccCcccccCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCC
Confidence 357999999999999999999999999999999999998872 21 1 123333456799999999998764
Q ss_pred CC-CC--C--CCCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHH
Q 019951 142 QR-GS--E--SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLH 216 (333)
Q Consensus 142 ~~-~~--~--~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~h 216 (333)
.. +. . ..-..-|+.+- . ..-++..... ....++..+
T Consensus 81 ~~~d~~~~~~~~lD~vi~svH--~-~~~~~~~~~~----------~~~~~~~a~-------------------------- 121 (237)
T COG1387 81 GSLDFLDEILKELDYVIASVH--E-LNFEDQDEED----------YTERLIAAM-------------------------- 121 (237)
T ss_pred CCcccchhhHhhcCEEEEEec--c-CCccccCHHH----------HHHHHHHHH--------------------------
Confidence 31 00 0 00111111110 0 0000000000 000011111
Q ss_pred HHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCE-EEEeCCCCCCCcHHHHHHHHHcCCCEEEE
Q 019951 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGL-AVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (333)
Q Consensus 217 ia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGv-aVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (333)
..+.+..+.....+.+. +.+.+...+.+++.++++.+.|.. .+-+-|.+......++..+.+.|+- +-+
T Consensus 122 ------~~~~v~il~H~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~aleins~~~~~~~~~~~~~~~~e~G~~-~~i 191 (237)
T COG1387 122 ------SNGAVDILAHPGGRLLG---RIDRGAYKEDIEELIELAEKNGKALEINSRPGRLDPNSEILRLARELGVK-LAI 191 (237)
T ss_pred ------cCCCccEEecCCccccc---cccccccHHHHHHHHHHHHHhCcEEeecCCcCccCchHHHHHHHHHhCCe-EEe
Confidence 11111111111111000 112233446688999999999876 4566666666667788888888887 777
Q ss_pred eCCCCCHHHH---HHHHHHHhhcCCCccceeec
Q 019951 296 YRSDGKLVGV---IFTLQDGSLFSLLPLTVLFG 325 (333)
Q Consensus 296 ~~~~~~~~~~---~~~~~~a~~~~l~~~~~~~~ 325 (333)
-+..|.+.+. .+.++.+++.++.+..+.++
T Consensus 192 ~tDaH~~~~lg~~~~~~~~~~~a~~~~~~i~~~ 224 (237)
T COG1387 192 GTDAHRPGDLGDMYFGVKIARRAGLTKERIINT 224 (237)
T ss_pred ecCcCChhhcccchHHHHHHHHhcCCccceEec
Confidence 7888988887 88899999999988888876
No 20
>PRK07945 hypothetical protein; Provisional
Probab=99.41 E-value=9.1e-12 Score=121.45 Aligned_cols=205 Identities=15% Similarity=0.144 Sum_probs=125.2
Q ss_pred CceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHHH------HHHH-Hh-CCCEEEEEEEE
Q 019951 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPEA------IETA-RR-FGMKIIPGVEI 136 (333)
Q Consensus 71 ~~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~----g--~~~~------~~~a-~~-~gi~~i~GiEi 136 (333)
.++++|+|+||.||||..++++++++|.++|++.+|||||.... + +..+ .+.+ ++ .+|+++.|+|+
T Consensus 94 ~~~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~ 173 (335)
T PRK07945 94 AALRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEV 173 (335)
T ss_pred HHHhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEe
Confidence 35899999999999999999999999999999999999997552 1 1111 1112 22 36999999999
Q ss_pred eeeecCC-CCCC--CCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCC
Q 019951 137 STIFCQR-GSES--EEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPG 213 (333)
Q Consensus 137 s~~~~~~-~~~~--~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~ 213 (333)
....+.. +... -..+.++.-......... .......+++.++...++ .++
T Consensus 174 d~~~~g~~~~~~~~l~~~D~vIgSvH~~~~~~-------------~~~~~~~l~~ai~~~~~d--------------vlg 226 (335)
T PRK07945 174 DILDDGSLDQEPELLDRLDVVVASVHSKLRMD-------------AAAMTRRMLAAVANPHTD--------------VLG 226 (335)
T ss_pred cccCCCCcchhHHHHHhCCEEEEEeecCCCCC-------------HHHHHHHHHHHhcCCCCe--------------EEe
Confidence 9864221 0000 001122111111000000 001123333333322222 355
Q ss_pred HHHHHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEE-EEeCCCCCCCcHHHHHHHHHcCCCE
Q 019951 214 RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA-VLAHPWALKNPAAIIRKLKDVGLHG 292 (333)
Q Consensus 214 ~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGva-VLAHP~~~~~~~~li~~l~~~GlDG 292 (333)
|+..... |. +. +. .+......+++++++.+.|-.. |-+.+.+......+++.+.++|+.
T Consensus 227 H~D~~~~-------------~~-~~--~~---~~~~~~~~~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~- 286 (335)
T PRK07945 227 HCTGRLV-------------TG-NR--GT---RPESKFDAEAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCL- 286 (335)
T ss_pred cCchhhh-------------cc-cc--CC---CChhhcCHHHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCe-
Confidence 5532110 00 00 00 0112234689999999999874 566666544446789999999997
Q ss_pred EEEeCCCCCHHHH---HHHHHHHhhcCCCccce
Q 019951 293 LEVYRSDGKLVGV---IFTLQDGSLFSLLPLTV 322 (333)
Q Consensus 293 IEv~~~~~~~~~~---~~~~~~a~~~~l~~~~~ 322 (333)
|-+-+..|.++++ .+..++|++.|+.|..|
T Consensus 287 vtigSDAH~p~~v~~~~~~~~~a~~~g~~~~~i 319 (335)
T PRK07945 287 FSIDTDAHAPGQLDWLGYGCERAEEAGVPADRI 319 (335)
T ss_pred EEecCCCCChhhcchHHHHHHHHHHcCCCHHHc
Confidence 8788888999887 77899999999977655
No 21
>PRK07328 histidinol-phosphatase; Provisional
Probab=99.41 E-value=7.9e-12 Score=118.02 Aligned_cols=210 Identities=17% Similarity=0.127 Sum_probs=122.3
Q ss_pred eEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------C-------HHHH---HHHHH-h-CCCEE
Q 019951 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------G-------IPEA---IETAR-R-FGMKI 130 (333)
Q Consensus 73 ~~~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt~~---------g-------~~~~---~~~a~-~-~gi~~ 130 (333)
|.+|+|+||.+| ||..++++++++|.++|++.+|||||.... . +... .+.++ + .+|++
T Consensus 2 m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~I 81 (269)
T PRK07328 2 MLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYV 81 (269)
T ss_pred CceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeE
Confidence 578999999999 999999999999999999999999997651 0 1221 11222 2 37999
Q ss_pred EEEEEEeeeecCCCC----CCC-------CcEEEEEeeccCCCCccHHHHHHHHH-HHhhHHHHH-HHHHHHHHhCCCCC
Q 019951 131 IPGVEISTIFCQRGS----ESE-------EPVHILAYYSSCGPSKYEELENFLAN-IRDGRFLRA-KDMILKLNKLKLPL 197 (333)
Q Consensus 131 i~GiEis~~~~~~~~----~~~-------~~vHiL~y~~d~~~~~~~~L~~~l~~-~~~~R~~r~-~~~i~~L~~~g~~i 197 (333)
+.|+|+....+.... -.. ..||.+.- .+. .++........ -.+...++. ..+++.++...++
T Consensus 82 l~GiE~~~~~~~~~~~~~~l~~~~~D~vigSvH~~~~-~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~d- 156 (269)
T PRK07328 82 RLGIEADYHPGTEEFLERLLEAYPFDYVIGSVHYLGA-WGF---DNPDFVAEYEERDLDELYRRYFALVEQAARSGLFD- 156 (269)
T ss_pred EEEEEecccCCcHHHHHHHHHhCCCCeEEEEEeecCC-cCC---CChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999975321100 011 12343320 000 01111111100 001111111 1222222222221
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEE-EEeCCCCCC
Q 019951 198 KWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA-VLAHPWALK 276 (333)
Q Consensus 198 ~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGva-VLAHP~~~~ 276 (333)
.++|+..+ .+|-.... .......+++++++.+.|... |-+.+.++.
T Consensus 157 -------------vlgH~d~i----------------~~~~~~~~----~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~ 203 (269)
T PRK07328 157 -------------IIGHPDLI----------------KKFGHRPR----EDLTELYEEALDVIAAAGLALEVNTAGLRKP 203 (269)
T ss_pred -------------EeeCccHH----------------HHcCCCCc----hhHHHHHHHHHHHHHHcCCEEEEEchhhcCC
Confidence 45665332 11110000 001123478999999998764 666655543
Q ss_pred C-----cHHHHHHHHHcCCCEEEEeCCCCCHHHH----HHHHHHHhhcCCCccc
Q 019951 277 N-----PAAIIRKLKDVGLHGLEVYRSDGKLVGV----IFTLQDGSLFSLLPLT 321 (333)
Q Consensus 277 ~-----~~~li~~l~~~GlDGIEv~~~~~~~~~~----~~~~~~a~~~~l~~~~ 321 (333)
. ...+++.+.++|+. |-+-+..|.++++ ..+.+++++.||....
T Consensus 204 ~~~~yp~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a~~~l~~~G~~~~~ 256 (269)
T PRK07328 204 VGEIYPSPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEALALLKEVGYTETV 256 (269)
T ss_pred CCCCCCCHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHHHHHHHHcCCcEEE
Confidence 1 25789999999998 9888999999888 5588999999996554
No 22
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=99.40 E-value=5.3e-13 Score=147.47 Aligned_cols=71 Identities=35% Similarity=0.482 Sum_probs=67.6
Q ss_pred CceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeec
Q 019951 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (333)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~ 141 (333)
...++|||+||++| ||.++|++++++|+++|+++||||||+++.|++++.+++++.+|++|+|+|+++.++
T Consensus 101 ~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d 173 (1213)
T TIGR01405 101 KEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDD 173 (1213)
T ss_pred ccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeecc
Confidence 46899999999999 999999999999999999999999999999999999999999999999999998654
No 23
>PRK08609 hypothetical protein; Provisional
Probab=99.34 E-value=4e-11 Score=124.49 Aligned_cols=200 Identities=17% Similarity=0.174 Sum_probs=124.1
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHHH-------HHHHHh-CCCEEEEEEEEee
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPEA-------IETARR-FGMKIIPGVEIST 138 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~----g--~~~~-------~~~a~~-~gi~~i~GiEis~ 138 (333)
+++|+||||.+|||..++++++++|.+.|++.++||||.... + ...+ .+..++ .+|+++.|+|+..
T Consensus 334 ~~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i 413 (570)
T PRK08609 334 IQGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDI 413 (570)
T ss_pred hcCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee
Confidence 788999999999999999999999999999999999997431 1 1111 121122 3799999999998
Q ss_pred eecCC-CCCCC--CcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHH
Q 019951 139 IFCQR-GSESE--EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRL 215 (333)
Q Consensus 139 ~~~~~-~~~~~--~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~ 215 (333)
..+.. +.... ....++...+....... +.+....+++.+..-.++ .++||
T Consensus 414 ~~~g~~d~~~~~L~~~D~vI~SvH~~~~~~-------------~~~~~~~l~~a~~~~~~d--------------ILaHp 466 (570)
T PRK08609 414 LPDGSLDYDDEVLAELDYVIAAIHSSFSQS-------------EEEIMKRLENACRNPYVR--------------LIAHP 466 (570)
T ss_pred cCCcchhhcHHHHHhhCEEEEEeecCCCCC-------------HHHHHHHHHHHhcCCCce--------------EEECC
Confidence 64221 10000 01122111110000000 000011122222111111 23332
Q ss_pred HHHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCE-EEEeCCCCCCCcHHHHHHHHHcCCCEEE
Q 019951 216 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGL-AVLAHPWALKNPAAIIRKLKDVGLHGLE 294 (333)
Q Consensus 216 hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGv-aVLAHP~~~~~~~~li~~l~~~GlDGIE 294 (333)
. .+++.. .+ ......+++++++.+.|.. -|-++|.+......+++.+.+.|+- +-
T Consensus 467 d------------------~rli~~-~~----~~~~d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~-i~ 522 (570)
T PRK08609 467 T------------------GRLIGR-RD----GYDVNIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVK-LA 522 (570)
T ss_pred C------------------cccccc-CC----CchHHHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCE-EE
Confidence 1 111211 11 1234578899998989876 5788888766667899999999996 87
Q ss_pred EeCCCCCHHHH---HHHHHHHhhcCCCcccee
Q 019951 295 VYRSDGKLVGV---IFTLQDGSLFSLLPLTVL 323 (333)
Q Consensus 295 v~~~~~~~~~~---~~~~~~a~~~~l~~~~~~ 323 (333)
+-+..|+++++ .+...+|++.||.|..|+
T Consensus 523 igSDAH~~~~l~~~~~~v~~ar~~~~~~~~v~ 554 (570)
T PRK08609 523 INTDAHHTEMLDDMKYGVATARKGWIQKDRVI 554 (570)
T ss_pred EECCCCChhhhCcHHHHHHHHHHcCCCHHHcc
Confidence 88888998887 889999999999876653
No 24
>PRK06361 hypothetical protein; Provisional
Probab=99.33 E-value=3e-11 Score=109.87 Aligned_cols=61 Identities=41% Similarity=0.709 Sum_probs=50.4
Q ss_pred eeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH--------HHHHhCCCEEEEEEEEeee
Q 019951 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI--------ETARRFGMKIIPGVEISTI 139 (333)
Q Consensus 79 ~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~--------~~a~~~gi~~i~GiEis~~ 139 (333)
+||.||||..+|++++++|.+.|++.||||||+...++..+. +..+..++.+++|+|++..
T Consensus 1 ~Ht~~sdg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~ 69 (212)
T PRK06361 1 THTIFSDGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHV 69 (212)
T ss_pred CCccccCCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc
Confidence 699999999999999999999999999999999876543221 1123358999999999853
No 25
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.28 E-value=4.9e-11 Score=110.64 Aligned_cols=64 Identities=28% Similarity=0.450 Sum_probs=50.9
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHhCCCEEEEEEEEee
Q 019951 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG-IPEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 72 ~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g-~~~~~~~a~~~gi~~i~GiEis~ 138 (333)
+|.+|+|+||. +||..+++++++.|.++|++.+|||||..... ........ .+|+++.|+|+..
T Consensus 1 ~m~~DlHvHt~-~d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~--~~i~Il~GiEi~~ 65 (237)
T PRK00912 1 MKFYDLNVHAV-PDGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL--LGFEIFRGVEIVA 65 (237)
T ss_pred CCceEeccCCC-CCCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh--cCCcEEeeEEEec
Confidence 35789999994 89999999999999999999999999987632 22222211 2899999999963
No 26
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=99.27 E-value=3e-11 Score=129.78 Aligned_cols=71 Identities=35% Similarity=0.524 Sum_probs=67.8
Q ss_pred CceEEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEeeeec
Q 019951 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (333)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis~~~~ 141 (333)
...++.||.||.+| ||..++++++++|+++|.++||||||+.++++++++.++++.|+++|.|+|.....+
T Consensus 333 ~eKRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD 405 (1444)
T COG2176 333 KEKRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDD 405 (1444)
T ss_pred ccceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeeccC
Confidence 45899999999999 999999999999999999999999999999999999999999999999999998653
No 27
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=99.25 E-value=3.2e-10 Score=106.18 Aligned_cols=205 Identities=18% Similarity=0.169 Sum_probs=114.1
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----C----------HHH----HHHHHHh--CCCEEEE
Q 019951 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----G----------IPE----AIETARR--FGMKIIP 132 (333)
Q Consensus 75 ~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt~~-----g----------~~~----~~~~a~~--~gi~~i~ 132 (333)
+|+|+||.+| ||..++++++++|+++|++.+|||||..+. . ++. +.+..++ .+|+++.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4899999999 999999999999999999999999997631 0 111 1122222 3799999
Q ss_pred EEEEeeeecCC----------CCC-CCCcEEEEEe-eccCCCCccHHHHHHHHHHHhh---HHHHHH-HHHHHHHhCCCC
Q 019951 133 GVEISTIFCQR----------GSE-SEEPVHILAY-YSSCGPSKYEELENFLANIRDG---RFLRAK-DMILKLNKLKLP 196 (333)
Q Consensus 133 GiEis~~~~~~----------~~~-~~~~vHiL~y-~~d~~~~~~~~L~~~l~~~~~~---R~~r~~-~~i~~L~~~g~~ 196 (333)
|+|+....+.. +.+ .-..||.+.- ..+. ....+...+...... -.++.. .+++.++..
T Consensus 81 GiE~~~~~~~~~~~~~~l~~~~~D~vigSvH~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~--- 154 (253)
T TIGR01856 81 GLEVDYIPGFEDFTKDFLDEYGLDFVIGSVHFLGGIPIDF---DAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQAL--- 154 (253)
T ss_pred EEEeccccchHHHHHHHHHHCCCCeEEEEEEeecCCCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99998652100 001 1234666531 1111 112222211111011 111111 111112211
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCC-C-cccCCCCCCHHHHHHHHHHhCCEE-EEeCCC
Q 019951 197 LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGG-P-AYSTGSEPLAEVAVQLIHRTGGLA-VLAHPW 273 (333)
Q Consensus 197 i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~-~-~yv~~~~~~~eevI~~I~~aGGva-VLAHP~ 273 (333)
.....++++..++ +|..... + ...+..+..++++++++.+.|... |-+.+.
T Consensus 155 ----------~~~dvlgH~Dli~----------------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~ 208 (253)
T TIGR01856 155 ----------FKPLVIGHIDLVQ----------------KFGPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGL 208 (253)
T ss_pred ----------CCCCCcccHhHHH----------------HhCccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhh
Confidence 0012467764332 1111000 0 000001123678999999998874 566555
Q ss_pred CCCC-----cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Q 019951 274 ALKN-----PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDG 312 (333)
Q Consensus 274 ~~~~-----~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a 312 (333)
++.. ...+++.+.++|+. |-+-+..|.+++.....+.|
T Consensus 209 r~~~~~~yP~~~il~~~~~~g~~-itlgSDAH~~~~vg~~~~~a 251 (253)
T TIGR01856 209 RKPLEEAYPSKELLNLAKELGIP-LVLGSDAHGPGDVGLSYHKA 251 (253)
T ss_pred cCCCCCCCCCHHHHHHHHHcCCC-EEecCCCCCHHHHhhhHHHh
Confidence 4321 26789999999988 88889999999885554444
No 28
>PRK08123 histidinol-phosphatase; Reviewed
Probab=99.24 E-value=3.3e-10 Score=107.12 Aligned_cols=211 Identities=19% Similarity=0.221 Sum_probs=113.3
Q ss_pred eEEceeeeCcCC-CCC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-----------------HHH----HHHHHHh--CC
Q 019951 73 VVFELHSHSNFS-DGY-LSPSKLVERAHCNGVKVLALTDHDTMSG-----------------IPE----AIETARR--FG 127 (333)
Q Consensus 73 ~~~DLH~HT~~S-DG~-~sp~eli~~A~~~Gl~~laITDHdt~~g-----------------~~~----~~~~a~~--~g 127 (333)
|.+|+|+||.+| ||. .++++++++|.++|++.+|||||..... +.. +.++.++ .+
T Consensus 2 m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~~ 81 (270)
T PRK08123 2 MKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAGQ 81 (270)
T ss_pred CccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccCC
Confidence 568999999999 775 6899999999999999999999976521 111 1122222 36
Q ss_pred CEEEEEEEEeeeecCC----------C--CC-CCCcEEEEE-----eeccCCCCccHHHHHHHHHHH--hhHHHHH-HHH
Q 019951 128 MKIIPGVEISTIFCQR----------G--SE-SEEPVHILA-----YYSSCGPSKYEELENFLANIR--DGRFLRA-KDM 186 (333)
Q Consensus 128 i~~i~GiEis~~~~~~----------~--~~-~~~~vHiL~-----y~~d~~~~~~~~L~~~l~~~~--~~R~~r~-~~~ 186 (333)
|.++.|+|+....... + .+ .-..||.+. +.++..+ ..+..+..... +.-.+.. ..+
T Consensus 82 i~i~~GiE~~~~~~~~~~~~~~l~~~~~~~DyvIgSvH~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~~Y~~~~ 158 (270)
T PRK08123 82 IDIRIGLEVDYIEGYEEETRAFLNEYGPLLDDSILSVHFLKGDGEYYCIDYSP---ETFAEFVDLLGSIEAVYEAYYETV 158 (270)
T ss_pred CeEEEEEEeeccCchHHHHHHHHHhcCCccceEEEEEEEECCCCceeeCCCCH---HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999998643110 0 01 223466553 1111110 11111110000 0001111 122
Q ss_pred HHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCE
Q 019951 187 ILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGL 266 (333)
Q Consensus 187 i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGv 266 (333)
++.++..... .....++++..++ +|.......+........++++++|.+.|.+
T Consensus 159 ~~~~~~~~~~----------~~~dvlgH~Dli~----------------r~~~~~~~~~~~~~~~~~~~il~~~~~~g~~ 212 (270)
T PRK08123 159 LQSIEADLGP----------YKPKRIGHITLVR----------------KFQKLFPPDFDEKNKELIEDILALIKKRGYE 212 (270)
T ss_pred HHHHHhcccc----------cCCCEeecchHHH----------------HhCccCCcccCHHHHHHHHHHHHHHHHcCCE
Confidence 2222111000 0011466664332 1110000000001112468999999999987
Q ss_pred E-EEeCCCCCC-----C-cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 267 A-VLAHPWALK-----N-PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 267 a-VLAHP~~~~-----~-~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
. |-+...+.. . ...+++.+.++|+. |.+-+..|.++++....+-|.
T Consensus 213 lEINtsgl~~~~~~~~yP~~~il~~~~e~g~~-itlgSDAH~~~~vg~~f~~a~ 265 (270)
T PRK08123 213 LDFNTAGLRKPYCGEPYPPGEIITLAKKLGIP-LVYGSDAHSAADVGRGYDTIE 265 (270)
T ss_pred EEEEchhhcCCCCCCCCCcHHHHHHHHHcCCC-EEEeCCCCCHHHHHhhHHHHH
Confidence 5 555433321 1 25788999999999 889999999999855444333
No 29
>PRK05588 histidinol-phosphatase; Provisional
Probab=99.20 E-value=2.1e-09 Score=100.59 Aligned_cols=207 Identities=14% Similarity=0.253 Sum_probs=117.5
Q ss_pred EEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------CHHHHHHHHHh-CCCEEEEEEEEeeeecC
Q 019951 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------GIPEAIETARR-FGMKIIPGVEISTIFCQ 142 (333)
Q Consensus 74 ~~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt~~---------g~~~~~~~a~~-~gi~~i~GiEis~~~~~ 142 (333)
.+|+|+||.+| ||..++++++++|.++|++.+ ||||..+. ..+...+..++ .+++++.|+|++...+.
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~~~~ 79 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGMEKDL 79 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecccCCC
Confidence 37999999999 999999999999999999988 99996432 12222322333 35899999999864321
Q ss_pred CC----------CC-CCCcEEEEEeeccCCCCccHHHHHHHH-HHHhhHHHH-HHHHHHHHHhCC-CCCCHHHHHHHhCC
Q 019951 143 RG----------SE-SEEPVHILAYYSSCGPSKYEELENFLA-NIRDGRFLR-AKDMILKLNKLK-LPLKWEHVAKIAGK 208 (333)
Q Consensus 143 ~~----------~~-~~~~vHiL~y~~d~~~~~~~~L~~~l~-~~~~~R~~r-~~~~i~~L~~~g-~~i~~e~l~~~~~~ 208 (333)
.+ .+ .-..||.+. +.+ .+ ...... .-.+...++ ...+++.+++.+ ++
T Consensus 80 ~~~~~~~l~~~~~D~vigSvH~~~-~~~----~~--~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~d------------ 140 (255)
T PRK05588 80 IEENKELINKYEFDYVIGSIHLVD-KLD----LY--LDEFYKDKSKEEAYHIYFENMLKCLEKYDFID------------ 140 (255)
T ss_pred HHHHHHHHhhCCCCeEEEeEEeeC-CCc----ch--HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCC------------
Confidence 00 00 112345432 100 00 001100 000011111 122222222222 22
Q ss_pred CCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCCCcc-cCCCCCCHHHHHHHHHHhCCEEE-EeC----CCCCCCcHHHH
Q 019951 209 GVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY-STGSEPLAEVAVQLIHRTGGLAV-LAH----PWALKNPAAII 282 (333)
Q Consensus 209 ~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~y-v~~~~~~~eevI~~I~~aGGvaV-LAH----P~~~~~~~~li 282 (333)
.++++..++ +|.......+ .......+++++++|.+.|-+.- -+. |........++
T Consensus 141 --vlgH~Dl~~----------------r~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l 202 (255)
T PRK05588 141 --SLGHIDYIS----------------RYAKYEDKEIYYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIY 202 (255)
T ss_pred --CccCHhHHH----------------HcCccccccccHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHH
Confidence 467764332 2111000000 00011336889999999998754 442 21111235678
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHH----HHHHHHHhhcCCC
Q 019951 283 RKLKDVGLHGLEVYRSDGKLVGV----IFTLQDGSLFSLL 318 (333)
Q Consensus 283 ~~l~~~GlDGIEv~~~~~~~~~~----~~~~~~a~~~~l~ 318 (333)
+.+.+.|+.=|-+-+..|.++++ .++.+++++.|+.
T Consensus 203 ~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 203 KRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 99999998867888999998877 6789999999995
No 30
>PRK07329 hypothetical protein; Provisional
Probab=99.00 E-value=1.1e-08 Score=95.49 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=115.4
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----------CHHHHH----HHHHhCCCEEEEEEEEee
Q 019951 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----------GIPEAI----ETARRFGMKIIPGVEIST 138 (333)
Q Consensus 75 ~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt~~-----------g~~~~~----~~a~~~gi~~i~GiEis~ 138 (333)
+|+|+||.+| ||..++++++++|. +.++||||..+. .+++.. ++.++.+.+++.|+|+..
T Consensus 2 ~D~H~Ht~~s~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~~ 77 (246)
T PRK07329 2 RDQHLHTHFSFDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIGY 77 (246)
T ss_pred cccccCCCCCCCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeCc
Confidence 5999999999 99999999999995 799999996431 122222 222345668999999986
Q ss_pred eecCCC----------CC-CCCcEEEEEeeccCCCCccHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 019951 139 IFCQRG----------SE-SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (333)
Q Consensus 139 ~~~~~~----------~~-~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~L~~~g~~i~~e~l~~~~~ 207 (333)
...... .+ .-..||.+.. .+.. ...+.. ....+.-......+++.++..+..
T Consensus 78 ~~~~~~~~~~~l~~~~~DyvIgSvH~~~~-~~~~---~~~~~~--~~~~~~~~~Y~~~~~~~v~~~~~f----------- 140 (246)
T PRK07329 78 FAPREDDILDFLANKDFDLKLLSVHHNGV-YDYL---DDEVAD--MDKKELLQEYFEKMEEAIGRVHDA----------- 140 (246)
T ss_pred ccccHHHHHHHhccCCCCeEEEEEEEcCC-CCCc---cHHHhc--CCHHHHHHHHHHHHHHHHHccCCC-----------
Confidence 432110 00 1123555421 1100 011110 000001111122333333322111
Q ss_pred CCCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEE-EEeCCCCCC----CcHHHH
Q 019951 208 KGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA-VLAHPWALK----NPAAII 282 (333)
Q Consensus 208 ~~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGva-VLAHP~~~~----~~~~li 282 (333)
..++||.+. .+++..+..-+ ......++++++++.+.|-+. |-+.+.+.. ....++
T Consensus 141 --dvlgHpDl~----------------~r~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l 201 (246)
T PRK07329 141 --DVLAHFDYG----------------LRLFDLTVEEL-KAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAI 201 (246)
T ss_pred --CEeeeccHH----------------HHhCCCCCcCh-HHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHH
Confidence 146776431 22222111000 000123578889999998775 555665322 124578
Q ss_pred HHHHHcCCCEEEEeCCCCCHHHH----HHHHHHHhhcCCCcc
Q 019951 283 RKLKDVGLHGLEVYRSDGKLVGV----IFTLQDGSLFSLLPL 320 (333)
Q Consensus 283 ~~l~~~GlDGIEv~~~~~~~~~~----~~~~~~a~~~~l~~~ 320 (333)
+.+.++|+.-|-+-+..|.++++ ..+.++++++||...
T Consensus 202 ~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~~~~ 243 (246)
T PRK07329 202 ELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGIKEI 243 (246)
T ss_pred HHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 88899998767888889999876 678899999998544
No 31
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=98.79 E-value=2.3e-08 Score=95.47 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=59.4
Q ss_pred ceEEceeeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhC--------CCEEEEEEEEeeee
Q 019951 72 NVVFELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF--------GMKIIPGVEISTIF 140 (333)
Q Consensus 72 ~~~~DLH~HT~~S---DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~--------gi~~i~GiEis~~~ 140 (333)
.+..|||+||.|| -..|..+.+++.|+..|++.|+.-|-..-....++.++..+. ++.+|+-+|+.
T Consensus 2 ~~~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evE--- 78 (403)
T COG1379 2 QVNADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLHPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVE--- 78 (403)
T ss_pred ccccceeeeeccccccccccchHHHHhhhhhcccceecccccCChHHHHHHHHHhhhccccccccceeEEEEEEeec---
Confidence 3567999999999 567999999999999999999999977665555555554431 23455555554
Q ss_pred cCCCCCCCCcEEEEEeecc
Q 019951 141 CQRGSESEEPVHILAYYSS 159 (333)
Q Consensus 141 ~~~~~~~~~~vHiL~y~~d 159 (333)
...+||+|.+.++
T Consensus 79 ------d~~rVHhLlilPS 91 (403)
T COG1379 79 ------DSRRVHHLLILPS 91 (403)
T ss_pred ------cCCceeEEEEcCc
Confidence 3568999999743
No 32
>PRK06740 histidinol-phosphatase; Validated
Probab=98.67 E-value=9.4e-07 Score=86.24 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHhCCEE-EEe-CCCCC--C--C-cHHHHHHHHHcCCCEEEEeCCCCCHHHH----HHHHHHHhhcCCCcc
Q 019951 252 LAEVAVQLIHRTGGLA-VLA-HPWAL--K--N-PAAIIRKLKDVGLHGLEVYRSDGKLVGV----IFTLQDGSLFSLLPL 320 (333)
Q Consensus 252 ~~eevI~~I~~aGGva-VLA-HP~~~--~--~-~~~li~~l~~~GlDGIEv~~~~~~~~~~----~~~~~~a~~~~l~~~ 320 (333)
..+++++++.+.|.+. |-+ +-.++ . . ...+++.+.++|+. |-+-+..|.+++. ..+.++++++|+...
T Consensus 240 ~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~-~tlgSDAH~p~~VG~~~~~a~~~l~~~G~~~i 318 (331)
T PRK06740 240 YYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVP-ITLSSDAHYPNDLGKYVEENVKTLRNHGVTSL 318 (331)
T ss_pred HHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCe-EEEeeCCCCHHHHHhHHHHHHHHHHHcCCcEE
Confidence 4678889999998875 343 22222 1 1 25789999999997 8788888999888 467899999999665
Q ss_pred ce
Q 019951 321 TV 322 (333)
Q Consensus 321 ~~ 322 (333)
.+
T Consensus 319 ~~ 320 (331)
T PRK06740 319 AT 320 (331)
T ss_pred EE
Confidence 43
No 33
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.32 E-value=0.0033 Score=57.75 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=49.3
Q ss_pred EceeeeCcCC--CCCCCHHH---HHHHHHHcCCcEEEEecCCCCCCHH-----------HHHHHHH--hCCCEEEEEEEE
Q 019951 75 FELHSHSNFS--DGYLSPSK---LVERAHCNGVKVLALTDHDTMSGIP-----------EAIETAR--RFGMKIIPGVEI 136 (333)
Q Consensus 75 ~DLH~HT~~S--DG~~sp~e---li~~A~~~Gl~~laITDHdt~~g~~-----------~~~~~a~--~~gi~~i~GiEi 136 (333)
+|.|||-... ||.-+.++ |+++|.+.|+..+.-|-|+.-.-|. ++.+..+ ..++.++||-||
T Consensus 2 IDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEI 81 (254)
T COG4464 2 IDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEI 81 (254)
T ss_pred ccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceE
Confidence 7999999876 99988887 6778889999999999997643221 1222222 257899999999
Q ss_pred eeee
Q 019951 137 STIF 140 (333)
Q Consensus 137 s~~~ 140 (333)
.+..
T Consensus 82 rIt~ 85 (254)
T COG4464 82 RITG 85 (254)
T ss_pred EEch
Confidence 8753
No 34
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=92.92 E-value=6 Score=37.51 Aligned_cols=61 Identities=20% Similarity=0.382 Sum_probs=44.7
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEE
Q 019951 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (333)
Q Consensus 72 ~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~Gi 134 (333)
++.+|-|||-.+..=....++++++|.+.|+..+.++= .+......+.+.++++. .+++.+
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g-~~~~~~~~~~~la~~y~-~v~~~~ 61 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVG-TDLEDFKRALELAEKYP-NVYAAV 61 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEee-cCHHHHHHHHHHHHhCC-CeEEEE
Confidence 36789999999876667899999999999988877764 23334556677777765 344433
No 35
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=91.72 E-value=0.16 Score=53.20 Aligned_cols=46 Identities=30% Similarity=0.418 Sum_probs=37.9
Q ss_pred eEEceeeeCcCC-CC-----CCCHHHHHHHHHH--------------cCCcEEEEecCCCCCCHHH
Q 019951 73 VVFELHSHSNFS-DG-----YLSPSKLVERAHC--------------NGVKVLALTDHDTMSGIPE 118 (333)
Q Consensus 73 ~~~DLH~HT~~S-DG-----~~sp~eli~~A~~--------------~Gl~~laITDHdt~~g~~~ 118 (333)
+..|||+||.+| |. ..+|++-..-|+- +=|+.++||||--.-|...
T Consensus 7 yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG~~~ 72 (592)
T PF12228_consen 7 YFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLGEVR 72 (592)
T ss_pred cccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhhhHH
Confidence 888999999999 53 5899999998873 3478899999988777653
No 36
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=89.93 E-value=1 Score=44.02 Aligned_cols=73 Identities=8% Similarity=0.122 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCccceeec
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPLTVLFG 325 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~~~~~~ 325 (333)
|..+++++.|++.||.+++-|+.. +...+++.+.++|+|.+-+....++..+..... +++...|+.|..+.++
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG--~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~ 272 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCG--AAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTA 272 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCC--CcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCC
Confidence 456899999999988888889875 334689999999999998876555665553332 3567777777766554
No 37
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=87.45 E-value=1.2 Score=40.54 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=42.0
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEe
Q 019951 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 75 ~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis 137 (333)
+|.|||-..+.-..+++++++.+.+.|++.+.++=.+ ..++..+.+.+++.+ ++++++=+.
T Consensus 2 iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 2 IDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred EEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 7999997644322379999999999999988754322 234555666677777 666655554
No 38
>PRK08508 biotin synthase; Provisional
Probab=81.13 E-value=7.3 Score=37.05 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEE--------e---CCCCCHHHHHHHHHHHhhcCCC-c
Q 019951 253 AEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV--------Y---RSDGKLVGVIFTLQDGSLFSLL-P 319 (333)
Q Consensus 253 ~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv--------~---~~~~~~~~~~~~~~~a~~~~l~-~ 319 (333)
+.++++.|++.+ ++.+.+-.+.. ..+.+.+|.++|+|.+-. | .+.++.++.....+.|++.|+. -
T Consensus 77 ~~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 77 VAEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred HHHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 357778888876 77766654433 367888999999887653 1 1235667777788888998883 3
Q ss_pred cceeecccccc
Q 019951 320 LTVLFGHFQSN 330 (333)
Q Consensus 320 ~~~~~~~~~~~ 330 (333)
..+.||+ |-|
T Consensus 155 sg~I~Gl-GEt 164 (279)
T PRK08508 155 SGGIFGL-GES 164 (279)
T ss_pred ceeEEec-CCC
Confidence 4567775 443
No 39
>PRK15108 biotin synthase; Provisional
Probab=80.57 E-value=7.5 Score=38.24 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEE-----------eCCCCCHHHHHHHHHHHhhcCCCc-c
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV-----------YRSDGKLVGVIFTLQDGSLFSLLP-L 320 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv-----------~~~~~~~~~~~~~~~~a~~~~l~~-~ 320 (333)
+.++|+.|++. |+.+.++.+.. ..+.+++|+++|+|++-+ ..+.++.++.....+.|.+.|+.. +
T Consensus 113 i~~~i~~ik~~-~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~s 189 (345)
T PRK15108 113 LEQMVQGVKAM-GLETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCS 189 (345)
T ss_pred HHHHHHHHHhC-CCEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceee
Confidence 55788888876 46666776643 378899999999996654 223467777788889999999843 3
Q ss_pred ceeecc
Q 019951 321 TVLFGH 326 (333)
Q Consensus 321 ~~~~~~ 326 (333)
..+||+
T Consensus 190 g~i~Gl 195 (345)
T PRK15108 190 GGIVGL 195 (345)
T ss_pred EEEEeC
Confidence 678887
No 40
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=80.48 E-value=3.3 Score=38.61 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=43.2
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEe
Q 019951 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 75 ~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis 137 (333)
+|.|||-...+-.....+++++|.+.|+..++++-.+. ..+....+.+++.+..+++++=|-
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDP-EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSH-HHHHHHHHHHHHTTTEEEEEE---
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCH-HHhHHHHHHHhcCCCeEEEEecCC
Confidence 68999998843345688888999999999997765444 245566666777777777776664
No 41
>PRK06256 biotin synthase; Validated
Probab=80.21 E-value=7.1 Score=37.81 Aligned_cols=72 Identities=15% Similarity=0.027 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEE-----------eCCCCCHHHHHHHHHHHhhcCCC-cc
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV-----------YRSDGKLVGVIFTLQDGSLFSLL-PL 320 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv-----------~~~~~~~~~~~~~~~~a~~~~l~-~~ 320 (333)
+.++++.|++.-++.+.++.+. ...+.+..|+++|++.+-+ ..+.++.++...+.+.+++.|+. -.
T Consensus 128 ~~e~i~~i~~~~~i~~~~~~g~--l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~ 205 (336)
T PRK06256 128 VVEAVKAIKEETDLEICACLGL--LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCS 205 (336)
T ss_pred HHHHHHHHHhcCCCcEEecCCc--CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 4466666666556666666554 2356677778888776643 12345666667777778888872 23
Q ss_pred ceeecc
Q 019951 321 TVLFGH 326 (333)
Q Consensus 321 ~~~~~~ 326 (333)
.+.||.
T Consensus 206 ~~I~Gl 211 (336)
T PRK06256 206 GGIIGM 211 (336)
T ss_pred CeEEeC
Confidence 455664
No 42
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=79.88 E-value=4.6 Score=39.71 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHhCCEEE--EeCCCCC
Q 019951 251 PLAEVAVQLIHRTGGLAV--LAHPWAL 275 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~~ 275 (333)
+...+++++||+.|+.++ |.|+++.
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 446789999999999865 8898763
No 43
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.47 E-value=5.3 Score=39.75 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 250 EPLAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 250 ~~~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
-+....+.++||+.||.++ |+|+++
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 4557789999999999866 899994
No 44
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.77 E-value=5.3 Score=37.20 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=47.3
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEec--CCCCCCHHHHHHHHHhCCCEEEEEEEEee
Q 019951 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD--HDTMSGIPEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 75 ~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITD--Hdt~~g~~~~~~~a~~~gi~~i~GiEis~ 138 (333)
+-+|+++.+|+-...|+++++.+++.|.+.+.|-| ..+..-..++.+.+++.|+++ |++++.
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~--~~~v~p 138 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKP--VFFTSP 138 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 34689999998778999999999999999999954 122233456777888899876 556654
No 45
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.78 E-value=25 Score=33.24 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 280 AIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 280 ~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
..++++++.|+||+=+ |+-+.++...+...++++||
T Consensus 108 ~f~~~~~~aGvdGvii--pDLp~ee~~~~~~~~~~~gl 143 (258)
T PRK13111 108 RFAADAAEAGVDGLII--PDLPPEEAEELRAAAKKHGL 143 (258)
T ss_pred HHHHHHHHcCCcEEEE--CCCCHHHHHHHHHHHHHcCC
Confidence 3455555555555544 33444455555555555554
No 46
>PRK10812 putative DNAse; Provisional
Probab=74.53 E-value=7.4 Score=36.82 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=36.7
Q ss_pred eEEceeeeCc---CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 019951 73 VVFELHSHSN---FSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (333)
Q Consensus 73 ~~~DLH~HT~---~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~g 127 (333)
..+|-|||-. +++=...+++++++|.+.|+..+.++=- +...+.++.+.+++..
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERD 58 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCC
Confidence 3689999976 3322347899999999999987655332 2334556666676653
No 47
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=74.45 E-value=90 Score=30.55 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=97.8
Q ss_pred ceEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC-H---HHHHHHH-HhCCCEEEEEEEEeeeecCCCC
Q 019951 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMSG-I---PEAIETA-RRFGMKIIPGVEISTIFCQRGS 145 (333)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt~~g-~---~~~~~~a-~~~gi~~i~GiEis~~~~~~~~ 145 (333)
..++|.++|--|- .-....+.+.+....-.++.++++||-.-++ + ..+..+. ++.|.
T Consensus 79 ~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~----------------- 141 (325)
T cd01306 79 VLRADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGL----------------- 141 (325)
T ss_pred cchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCC-----------------
Confidence 4678888888775 3445667777777788899999999988765 2 2222222 11111
Q ss_pred CCCCcEEEEEeeccCCCCccHHHHHHHHHHHhhH----HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHH
Q 019951 146 ESEEPVHILAYYSSCGPSKYEELENFLANIRDGR----FLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 221 (333)
Q Consensus 146 ~~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R----~~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~L 221 (333)
+ -+++.+++.+....+ .+..+.+++...+.|+++.- +.. .+..++ +..
T Consensus 142 -------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~gl~vas-----H~d----~~~~~v-~~a 193 (325)
T cd01306 142 -------------S-----DEEVEEAILERKARAAAYAPANRSELAALARARGIPLAS-----HDD----DTPEHV-AEA 193 (325)
T ss_pred -------------C-----HHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHCCCcEEE-----ecC----CChHHH-HHH
Confidence 0 133444444433332 23445566666667776510 000 001111 111
Q ss_pred HHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEEEEeCCCCCCC----cHHHHHHHHHcCCCEEEEeC
Q 019951 222 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKN----PAAIIRKLKDVGLHGLEVYR 297 (333)
Q Consensus 222 v~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~----~~~li~~l~~~GlDGIEv~~ 297 (333)
.+.|. ....+|...++++.+++.|...++..|...+. ...-+.++.+.|+- + +..
T Consensus 194 ~~~Gv-------------------~~~E~p~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~~~~~~ll~~Gv~-~-al~ 252 (325)
T cd01306 194 HELGV-------------------VISEFPTTLEAAKAARELGLQTLMGAPNVVRGGSHSGNVSARELAAHGLL-D-ILS 252 (325)
T ss_pred HHCCC-------------------eeccCCCCHHHHHHHHHCCCEEEecCcccccCccccccHhHHHHHHCCCe-E-EEE
Confidence 11121 11234566788999999998888776643221 12345678888974 3 444
Q ss_pred CCC-CHHHHHHHHHHHhhcCC
Q 019951 298 SDG-KLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 298 ~~~-~~~~~~~~~~~a~~~~l 317 (333)
+++ .......+.+++.+.++
T Consensus 253 SD~~p~sll~~~~~la~~~gl 273 (325)
T cd01306 253 SDYVPASLLHAAFRLADLGGW 273 (325)
T ss_pred cCCCcHhHHHHHHHHHHHcCC
Confidence 443 34444566666666555
No 48
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=74.25 E-value=7.7 Score=36.53 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=37.1
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhC
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF 126 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~ 126 (333)
-.+|-|||-.++.=....++++++|++.|+..+.++=- +...+..+.+.+++.
T Consensus 4 ~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~ 56 (258)
T PRK11449 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERY 56 (258)
T ss_pred eEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhC
Confidence 46899999876532337889999999999988766332 244455666666654
No 49
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=73.54 E-value=15 Score=37.32 Aligned_cols=130 Identities=24% Similarity=0.339 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHcCCcEEEEecC-CCCCCHHHHHHHHHhCCCEEEEEEEEeeeecCCCCCCCCcEEEEEeeccCCCCccHH
Q 019951 89 SPSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEE 167 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~laITDH-dt~~g~~~~~~~a~~~gi~~i~GiEis~~~~~~~~~~~~~vHiL~y~~d~~~~~~~~ 167 (333)
=++..+++|.++|++.+=|-|- |.+.+...+.+++++.|..+.--+-.++. ++|-+-|+.
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~s----------PvHt~e~yv--------- 159 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTS----------PVHTLEYYV--------- 159 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccC----------CcccHHHHH---------
Confidence 4678899999999999999885 33455666777888888765444433332 477665542
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCC-CCHHHHHHHhCCCCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCCCccc
Q 019951 168 LENFLANIRDGRFLRAKDMILKLNKLKLP-LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYS 246 (333)
Q Consensus 168 L~~~l~~~~~~R~~r~~~~i~~L~~~g~~-i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv 246 (333)
++.+.|.+.|++ |.+.|... . .
T Consensus 160 -----------------~~akel~~~g~DSIciKDmaG--------------------------------l--------l 182 (472)
T COG5016 160 -----------------ELAKELLEMGVDSICIKDMAG--------------------------------L--------L 182 (472)
T ss_pred -----------------HHHHHHHHcCCCEEEeecccc--------------------------------c--------C
Confidence 222334444443 11111100 0 0
Q ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCCCCCCCc-HHHHHHHHHcCCCEEEEe
Q 019951 247 TGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVY 296 (333)
Q Consensus 247 ~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GlDGIEv~ 296 (333)
. .-.+.|.|..|++.=+++|.-|-..-... .-..-.++++|+|+|-..
T Consensus 183 t--P~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 183 T--PYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred C--hHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhh
Confidence 0 12367899999999999998886543222 222334579999999765
No 50
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=73.48 E-value=9.2 Score=34.57 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=38.6
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEE
Q 019951 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (333)
Q Consensus 75 ~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEi 136 (333)
+|.|||.....+..+++++++.+.+.|+..+.+.--. ......+.+.+++. ..+++++-+
T Consensus 2 ~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~-~~~~~~~~~la~~~-~~i~~~~G~ 61 (251)
T cd01310 2 IDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTD-LKSSKRALELAKKY-DNVYAAVGL 61 (251)
T ss_pred EEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhC-CCeEEEEee
Confidence 7999998654334688999999999999887776322 11233445555554 445555433
No 51
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=73.34 E-value=27 Score=32.89 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
.++.++...++|.--++.|........++++.+.+.|++-+-+..|..+.+......+.+.
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 3566666667666666666443333345566666667776666666666665555555544
No 52
>PRK10425 DNase TatD; Provisional
Probab=72.41 E-value=8.7 Score=36.23 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=36.6
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 019951 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (333)
Q Consensus 75 ~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~g 127 (333)
+|-|||-.+..-.-..++++++|++.|+..+.++--+ ...+.++.+.++...
T Consensus 2 iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~ 53 (258)
T PRK10425 2 FDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYP 53 (258)
T ss_pred EEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCC
Confidence 6999997644333578999999999998777665433 444666777776653
No 53
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.34 E-value=9.7 Score=35.91 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCEEEEeCCC-----CCCCcHHHHHHHHHcCCCEEEEeCCCC--CHHHHHHHHHHHhhcCCCcc
Q 019951 253 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~-----~~~~~~~li~~l~~~GlDGIEv~~~~~--~~~~~~~~~~~a~~~~l~~~ 320 (333)
+++.|++.|++|--+..-.-. ....-++.++++.++|++.||+....- +.++...+.+.+++.||.+.
T Consensus 56 l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~ 130 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVL 130 (244)
T ss_dssp HHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEE
T ss_pred HHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEe
Confidence 889999999998443321110 012236789999999999999998764 56677889999999998654
No 54
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=70.24 E-value=10 Score=37.55 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
...+++++||+.|+.++ |.|+++
T Consensus 80 ~~~~lad~vH~~Ga~i~~QL~H~Gr 104 (362)
T PRK10605 80 AWKKITAGVHAEGGHIAVQLWHTGR 104 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCC
Confidence 35567778888877755 667654
No 55
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=70.24 E-value=10 Score=37.30 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHhCCEEE--EeCCCCC
Q 019951 251 PLAEVAVQLIHRTGGLAV--LAHPWAL 275 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~~ 275 (333)
+...+++++||+.|+.++ |.|+++.
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~ 107 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRK 107 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 346788999999999865 7898763
No 56
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=69.45 E-value=7.7 Score=35.92 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccc--eeecc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLT--VLFGH 326 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~ 326 (333)
.+.++.++++|+||||++.+.. .....+.++.+++||.... +.+|+
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~ 65 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPYD--YDIEELKQVLASNKLEHTLHNLPAGD 65 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC--CCHHHHHHHHHHcCCcEEEEcCCCCc
Confidence 6678899999999999887432 3457777788899986543 34444
No 57
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=68.64 E-value=20 Score=35.20 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhC------CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC----C--------CCCHHHHHHHHHHHhh
Q 019951 253 AEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR----S--------DGKLVGVIFTLQDGSL 314 (333)
Q Consensus 253 ~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~----~--------~~~~~~~~~~~~~a~~ 314 (333)
++++++.|++.- -+.+-++|.... .+.++.|.++|++.|.+-- + .|+.++...+.+.+++
T Consensus 70 l~~ll~~i~~~~~~~~~~eitie~np~~lt--~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~ 147 (360)
T TIGR00539 70 FERLFESIYQHASLSDDCEITTEANPELIT--AEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALK 147 (360)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 445666665431 256677887543 5677888888877665432 1 2566666777888888
Q ss_pred cCCCccce--eecc
Q 019951 315 FSLLPLTV--LFGH 326 (333)
Q Consensus 315 ~~l~~~~~--~~~~ 326 (333)
+|+.+-++ .||-
T Consensus 148 ~G~~~v~~dli~Gl 161 (360)
T TIGR00539 148 SGIENISLDLMYGL 161 (360)
T ss_pred cCCCeEEEeccCCC
Confidence 88754333 5654
No 58
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.62 E-value=17 Score=34.06 Aligned_cols=69 Identities=7% Similarity=0.069 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCEEEEeCCC-----CCCCcHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHhhcCCCccc
Q 019951 253 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSD--GKLVGVIFTLQDGSLFSLLPLT 321 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~-----~~~~~~~li~~l~~~GlDGIEv~~~~--~~~~~~~~~~~~a~~~~l~~~~ 321 (333)
+++.|++.|++|--+..-..+ ....-++.+++..++|++.||+.... -+.++...+.+.+.+.||.+..
T Consensus 43 l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 788999999887433322111 00122567889999999999999874 4677778999999999996653
No 59
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=68.60 E-value=23 Score=35.16 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCC-EEEEeCCCCCHHHHHHHHH--HHhhcCCCccceeecc
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLH-GLEVYRSDGKLVGVIFTLQ--DGSLFSLLPLTVLFGH 326 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlD-GIEv~~~~~~~~~~~~~~~--~a~~~~l~~~~~~~~~ 326 (333)
|...++++.|++.|...++ |... +...+++.+.++|.+ .+-+... .+..+...... .+-..|+.|..+..|.
T Consensus 255 P~~k~i~~~i~~~g~~~il-h~cG--~~~~~l~~l~~~g~~~v~~~~~~-~dl~~ak~~~g~~~~i~GNl~p~~L~~Gt 329 (378)
T cd03308 255 PSFKKVVEGLAARGQRIFL-FFEG--DWERYLEYLQELPKGKTVGLFEY-GDPKKVKEKLGDKKCIAGGFPTTLLKYGT 329 (378)
T ss_pred HHHHHHHHHHHhcCCCEEE-EcCC--CcHHHHHHHHhcCCCcEEEcCCC-CCHHHHHHHhCCCEEEEcCCCCHHHhcCC
Confidence 5578999999998655454 8763 335678999999998 4433333 56665544443 6777888777555554
No 60
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.59 E-value=13 Score=37.05 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
+...+++++||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCC
Confidence 345778899999998765 788775
No 61
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.70 E-value=11 Score=37.03 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
+...+++++||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 457789999999999865 788775
No 62
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=67.30 E-value=20 Score=33.82 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCE----EEEeC--------CCCCHHHHHHHHHHHhhcCC
Q 019951 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHG----LEVYR--------SDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDG----IEv~~--------~~~~~~~~~~~~~~a~~~~l 317 (333)
++++.+++. |+.+.++++.. ..+.++.|.++|++. +| .+ +.++.+....+.+.+++.|+
T Consensus 102 ~i~~~~~~~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi 172 (296)
T TIGR00433 102 AMVQIVEEM-GLKTCATLGLL--DPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGL 172 (296)
T ss_pred HHHHHHHhC-CCeEEecCCCC--CHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCC
Confidence 344444443 45566666532 256677777777776 33 22 12455555666777777776
No 63
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=66.88 E-value=24 Score=31.16 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=16.3
Q ss_pred HHHHHHhCCEEEEeCCCCCC-CcHHHHHHHHHcCCC
Q 019951 257 VQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLH 291 (333)
Q Consensus 257 I~~I~~aGGvaVLAHP~~~~-~~~~li~~l~~~GlD 291 (333)
++.+.++|.-.+..|..... ...++++.+.+.|+.
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~ 105 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKE 105 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCe
Confidence 45555566555555543211 113345555555544
No 64
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=66.86 E-value=13 Score=36.42 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
...+++++||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 78 GFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHhcCCeEEEeccCCCc
Confidence 35678889999988755 788775
No 65
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=66.21 E-value=8.6 Score=35.37 Aligned_cols=41 Identities=10% Similarity=-0.052 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLT 321 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~ 321 (333)
.+.++.++++|++|||++.+.. .....+.++++++||....
T Consensus 17 ~e~~~~~~e~G~~~vEl~~~~~--~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 17 LERFAAAAQAGFTGVEYLFPYD--WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHcCCCEEEecCCcc--CCHHHHHHHHHHcCCeEEE
Confidence 5678888888999999887542 2456678888888885443
No 66
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=65.89 E-value=49 Score=31.60 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLP 319 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~ 319 (333)
+..++++.+.|+||+=+ ++-++++...+.+.|+++|+.+
T Consensus 112 e~F~~~~~~~GvdGliv--pDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 112 EKFLRRAKEAGVDGLLV--PDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHHHHHHHHcCCCEEEe--CCCChHHHHHHHHHHHHcCCcE
Confidence 56678888999998754 4566677778888888888754
No 67
>PRK07094 biotin synthase; Provisional
Probab=65.75 E-value=31 Score=33.10 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEE----EEeC--------CCCCHHHHHHHHHHHhhcCC
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL----EVYR--------SDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI----Ev~~--------~~~~~~~~~~~~~~a~~~~l 317 (333)
+.++++.|++..|+.+-.+++. ...+.++.|.++|++.+ |..+ +.++.++...+.+.+++.|+
T Consensus 105 l~~l~~~i~~~~~l~i~~~~g~--~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 105 IADIIKEIKKELDVAITLSLGE--RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY 179 (323)
T ss_pred HHHHHHHHHccCCceEEEecCC--CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 3455555555444544444432 12455566666665543 2221 23455555555666666665
No 68
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=65.38 E-value=29 Score=35.34 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhC------CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC------------CCCCHHHHHHHHHHHhh
Q 019951 253 AEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR------------SDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 253 ~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~------------~~~~~~~~~~~~~~a~~ 314 (333)
++++++.|++.- -+.+-++|.... .+.++.|.++|++-|.+-- -.++.++...+.+.+++
T Consensus 122 l~~ll~~i~~~~~~~~~~e~tie~~p~~lt--~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~ 199 (453)
T PRK13347 122 FERLMAALRDAFDFAPEAEIAVEIDPRTVT--AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRA 199 (453)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEeccccCC--HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 455566665531 234456665432 4566666666666555432 12445555666666666
Q ss_pred cCCC
Q 019951 315 FSLL 318 (333)
Q Consensus 315 ~~l~ 318 (333)
.|+.
T Consensus 200 ~G~~ 203 (453)
T PRK13347 200 AGFE 203 (453)
T ss_pred cCCC
Confidence 6664
No 69
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.27 E-value=17 Score=33.77 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCEEEEeCC-------CCCHHHHHHHHHHHhhcCCCccc
Q 019951 279 AAIIRKLKDVGLHGLEVYRS-------DGKLVGVIFTLQDGSLFSLLPLT 321 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~-------~~~~~~~~~~~~~a~~~~l~~~~ 321 (333)
.+.++.+.++|++|||++.. ..+......+.+.+.++||....
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE
Confidence 56788888889999998632 12234557778888888885443
No 70
>PLN02411 12-oxophytodienoate reductase
Probab=62.47 E-value=19 Score=36.14 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.7
Q ss_pred HHHHcCCCEEEEeC
Q 019951 284 KLKDVGLHGLEVYR 297 (333)
Q Consensus 284 ~l~~~GlDGIEv~~ 297 (333)
.+.++|+||||+.-
T Consensus 173 rA~~AGFDGVEIH~ 186 (391)
T PLN02411 173 NAIRAGFDGIEIHG 186 (391)
T ss_pred HHHHcCCCEEEEcc
Confidence 33578999999974
No 71
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=62.34 E-value=24 Score=34.41 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhC-CEEEEeC-C------C-CCC-CcHHHHHHHHHcCCCEE-----EEeC--------CC-CCHHHHHHH
Q 019951 253 AEVAVQLIHRTG-GLAVLAH-P------W-ALK-NPAAIIRKLKDVGLHGL-----EVYR--------SD-GKLVGVIFT 308 (333)
Q Consensus 253 ~eevI~~I~~aG-GvaVLAH-P------~-~~~-~~~~li~~l~~~GlDGI-----Ev~~--------~~-~~~~~~~~~ 308 (333)
+.++++.|++.+ ++.+.|- | . ... ...+.+..|+++|++.+ |.+. +. ++.++...+
T Consensus 105 ~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~ 184 (343)
T TIGR03551 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEI 184 (343)
T ss_pred HHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHH
Confidence 467888888875 5665542 1 1 111 23678899999998843 5554 22 367777888
Q ss_pred HHHHhhcCCCc-cceeecc
Q 019951 309 LQDGSLFSLLP-LTVLFGH 326 (333)
Q Consensus 309 ~~~a~~~~l~~-~~~~~~~ 326 (333)
.+.|++.|+.. ..+.||+
T Consensus 185 i~~a~~~Gi~v~s~~i~G~ 203 (343)
T TIGR03551 185 IKTAHKLGIPTTATIMYGH 203 (343)
T ss_pred HHHHHHcCCcccceEEEec
Confidence 99999999943 3557774
No 72
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=62.14 E-value=9.3 Score=37.32 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH--HHhhcCCCccceeec
Q 019951 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQ--DGSLFSLLPLTVLFG 325 (333)
Q Consensus 251 ~~~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~--~a~~~~l~~~~~~~~ 325 (333)
|...++++.|++.| ++.|+-|.+ +...+++.+.+.|+|++.+-+. .+..+...... .+-..|+.| .+++|
T Consensus 224 P~~k~i~~~i~~~~~~~~ilh~cg---~~~~~~~~~~~~~~~~is~d~~-~dl~~~k~~~g~~~~i~Gni~p-~ll~g 296 (346)
T PRK00115 224 PYMKRIVAELKREHPDVPVILFGK---GAGELLEAMAETGADVVGLDWT-VDLAEARRRVGDKKALQGNLDP-AVLLA 296 (346)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcC---CcHHHHHHHHhcCCCEEeeCCC-CCHHHHHHHcCCCeEEEeCCCh-hHhcC
Confidence 55789999999998 777775555 3345788899999998877664 44444433322 566777766 44555
No 73
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=62.07 E-value=30 Score=34.23 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=61.1
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHh--CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------CCCH
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------DGKL 302 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a--GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------~~~~ 302 (333)
|++.|.|-+.+. ..+++++++|+.. ..+.+=++|.... .+.++.+.++|++-|++--- .|+.
T Consensus 63 y~GGGTPs~l~~--~~l~~ll~~i~~~~~~eit~E~~P~~~~--~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~ 138 (370)
T PRK06294 63 FFGGGTPSLVPP--ALIQDILKTLEAPHATEITLEANPENLS--ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSS 138 (370)
T ss_pred EECCCccccCCH--HHHHHHHHHHHhCCCCeEEEEeCCCCCC--HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCH
Confidence 555555543332 2356778888764 3578889997653 67899999999987766432 3567
Q ss_pred HHHHHHHHHHhhcCCCcc--ceeecccccc
Q 019951 303 VGVIFTLQDGSLFSLLPL--TVLFGHFQSN 330 (333)
Q Consensus 303 ~~~~~~~~~a~~~~l~~~--~~~~~~~~~~ 330 (333)
++...+.+.+++.|+... .+.||-=|-|
T Consensus 139 ~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 139 SKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 777888999999998643 3577754443
No 74
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.74 E-value=53 Score=33.91 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-CCCHHHHHHHHHhCCCEEEE
Q 019951 90 PSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIP 132 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHdt-~~g~~~~~~~a~~~gi~~i~ 132 (333)
.+..++.|.++|++.+=|.||-+ +.....+.+++++.|..+..
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~ 150 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQL 150 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 44568899999999999999866 44566777888888886553
No 75
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=61.60 E-value=14 Score=35.76 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHh-CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCccceeec
Q 019951 251 PLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPLTVLFG 325 (333)
Q Consensus 251 ~~~eevI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~~~~~~ 325 (333)
|...++++.|++. |+++|+=|.+. ...+++.+.+.|+|++.+-+. .+..+..... +.+-..|+.|.. ++|
T Consensus 218 p~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~-~dl~e~~~~~~~~~~i~Gni~p~~-l~g 290 (338)
T TIGR01464 218 PYLKKIIEEVKARLPNVPVILFAKG---AGHLLEELAETGADVVGLDWT-VDLKEARKRVGPGVAIQGNLDPAV-LYA 290 (338)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHhcCCCEEEeCCC-CCHHHHHHHhCCCeeEEeCCChHH-hcC
Confidence 5578899999998 78777766552 346899999999999877653 4554443333 257777887744 365
No 76
>PLN02389 biotin synthase
Probab=61.40 E-value=39 Score=33.80 Aligned_cols=72 Identities=15% Similarity=0.024 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC-----------CCCCHHHHHHHHHHHhhcCCC-c
Q 019951 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-----------SDGKLVGVIFTLQDGSLFSLL-P 319 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~-----------~~~~~~~~~~~~~~a~~~~l~-~ 319 (333)
.+.++|+.|++. |+.|.+..+. ...+.+..|+++|+|.+-+.- +.++.++.....+.|++.|+. -
T Consensus 154 ~i~eiir~ik~~-~l~i~~s~G~--l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 154 QILEYVKEIRGM-GMEVCCTLGM--LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHhcC-CcEEEECCCC--CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEe
Confidence 355677777754 5767666653 236789999999998764332 135667777889999999983 2
Q ss_pred cceeecc
Q 019951 320 LTVLFGH 326 (333)
Q Consensus 320 ~~~~~~~ 326 (333)
..+.||+
T Consensus 231 sg~IiGl 237 (379)
T PLN02389 231 SGGIIGL 237 (379)
T ss_pred EEEEECC
Confidence 4677886
No 77
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=60.83 E-value=18 Score=36.06 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHhCCEEE--EeCC
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHP 272 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP 272 (333)
...+++++||+.|+.++ |.|.
T Consensus 84 ~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 84 TAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHHcCCEEEEEccCc
Confidence 35678889999988755 6774
No 78
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.70 E-value=12 Score=35.82 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
...+++++||+.|+.++ |.|+++
T Consensus 78 ~~~~~~~~vh~~g~~~~~Ql~h~G~ 102 (327)
T cd02803 78 GLRKLTEAVHAHGAKIFAQLAHAGR 102 (327)
T ss_pred HHHHHHHHHHhCCCHhhHHhhCCCc
Confidence 35567777777777654 666654
No 79
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=60.64 E-value=24 Score=32.93 Aligned_cols=46 Identities=7% Similarity=-0.060 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCEEEEeCCCC---------CHHHHHHHHHHHhhcCCCccceee
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDG---------KLVGVIFTLQDGSLFSLLPLTVLF 324 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~---------~~~~~~~~~~~a~~~~l~~~~~~~ 324 (333)
.+.++.+.+.|++|||+.-+.. +..+...+.+..+++|+....+-+
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~ 73 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCL 73 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeec
Confidence 4667777888888888874321 355567777888888886655543
No 80
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=60.38 E-value=20 Score=34.89 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
...+++++||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 78 ALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred HHHHHHHHHHhcCCcEEEEccCCCc
Confidence 35677888888888755 667654
No 81
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=60.38 E-value=20 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
...+++++||+.|+.++ |.|+++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~ 105 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGR 105 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GG
T ss_pred HHHHHHHHHHhcCccceeecccccc
Confidence 35789999999999877 688764
No 82
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=60.16 E-value=26 Score=35.12 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred eEEceeeeCcCCC--C--------------------CCCHHHHHHHHH-------HcCCcEEEEecCCCCCCHHHHHHHH
Q 019951 73 VVFELHSHSNFSD--G--------------------YLSPSKLVERAH-------CNGVKVLALTDHDTMSGIPEAIETA 123 (333)
Q Consensus 73 ~~~DLH~HT~~SD--G--------------------~~sp~eli~~A~-------~~Gl~~laITDHdt~~g~~~~~~~a 123 (333)
-.+|.|+|...+. | .++|+++...|. ..|+..+. ||.+........+.+
T Consensus 57 GlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~--d~~~~~~~~~~~~a~ 134 (445)
T PRK07228 57 GLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIV--DMESVHHTDSAFEAA 134 (445)
T ss_pred CEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEE--ccccccChHHHHHHH
Confidence 4889999987641 1 145666666665 77886554 887765556666777
Q ss_pred HhCCCEEEEEEEEe
Q 019951 124 RRFGMKIIPGVEIS 137 (333)
Q Consensus 124 ~~~gi~~i~GiEis 137 (333)
...|++.+.|.++.
T Consensus 135 ~~~g~r~~~~~~~~ 148 (445)
T PRK07228 135 GESGIRAVLGKVMM 148 (445)
T ss_pred HHcCCeEEEeccee
Confidence 77899888877664
No 83
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=59.78 E-value=15 Score=36.87 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=43.1
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhCCCEEEEEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGV 134 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt--~~---g~~~~~~~a~~~gi~~i~Gi 134 (333)
-.+|.|+|...|- .+|+++.+.|...|+..+..--|.. +. ++..+.+.+++..+.++..+
T Consensus 10 G~ID~H~Hi~~~~--~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 10 GFIDAHLHIESSM--LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CEEEccCCcCCCC--CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 4789999988763 5889999999999999887744442 22 34555666666676666665
No 84
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=59.47 E-value=36 Score=34.64 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHHHHHh----C--CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC------------CCCCHHHHHHHHHHHhh
Q 019951 253 AEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR------------SDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 253 ~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~------------~~~~~~~~~~~~~~a~~ 314 (333)
+.++++.|++. . -+.+-++|.... ++.++.|.++|+..|.+-- -.++.+....+.+.+++
T Consensus 121 l~~ll~~i~~~~~~~~~~eitie~np~~l~--~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~ 198 (455)
T TIGR00538 121 ISRLMKLIRENFPFNADAEISIEIDPRYIT--KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHARE 198 (455)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 45566666653 1 255666665432 5667777777776666532 12455555667777777
Q ss_pred cCCC--ccceeeccc
Q 019951 315 FSLL--PLTVLFGHF 327 (333)
Q Consensus 315 ~~l~--~~~~~~~~~ 327 (333)
.|+. ...+.||-=
T Consensus 199 ~G~~~v~~dli~GlP 213 (455)
T TIGR00538 199 AGFTSINIDLIYGLP 213 (455)
T ss_pred cCCCcEEEeEEeeCC
Confidence 7763 234555543
No 85
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=59.09 E-value=15 Score=35.43 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
|...++++.||+.|+-.+.-|.+.. ...+++.+.+.|+|++.+-..
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~ 265 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEK 265 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TT
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCC
Confidence 4578999999999984567787642 245899999999999987543
No 86
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=58.97 E-value=20 Score=37.76 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCCCC--CCCcHHHHHHHHHcCC-------------------------CEEEEeCCC
Q 019951 247 TGSEPLAEVAVQLIHRTGGLAVLAHPWA--LKNPAAIIRKLKDVGL-------------------------HGLEVYRSD 299 (333)
Q Consensus 247 ~~~~~~~eevI~~I~~aGGvaVLAHP~~--~~~~~~li~~l~~~Gl-------------------------DGIEv~~~~ 299 (333)
..+++..+.+|++++++|.-+| ||+- +.......+.+.+.|| -|+-+...+
T Consensus 57 aeSYL~~dkIi~Aa~~tGA~AI--HPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~ 134 (645)
T COG4770 57 AESYLDIDKIIDAARRTGAQAI--HPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGY 134 (645)
T ss_pred hhhhccHHHHHHHHHHhCcccc--cCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCC
Confidence 3457888999999999998876 8972 2222233333333332 234456666
Q ss_pred CC-HHHHHHHHHHHhhcCCCcccee
Q 019951 300 GK-LVGVIFTLQDGSLFSLLPLTVL 323 (333)
Q Consensus 300 ~~-~~~~~~~~~~a~~~~l~~~~~~ 323 (333)
+. .++..++...|.++|+ |-.+|
T Consensus 135 ~g~~qd~~~~~~~A~eiGy-PVlIK 158 (645)
T COG4770 135 HGPIQDAAELVAIAEEIGY-PVLIK 158 (645)
T ss_pred CCcccCHHHHHHHHHhcCC-cEEEE
Confidence 53 4455888999999998 77666
No 87
>PRK07945 hypothetical protein; Provisional
Probab=58.40 E-value=22 Score=34.82 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCEEEEeCCCC---CC----------CcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWA---LK----------NPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~---~~----------~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
+.+++++. .+.+-||+||.. +. ...++++.+++.|+- ||+..+.....-....+++|+++|.
T Consensus 211 ~~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~-lEINt~~~r~~P~~~il~~a~e~G~ 285 (335)
T PRK07945 211 RRMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTA-VEINSRPERRDPPTRLLRLALDAGC 285 (335)
T ss_pred HHHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCE-EEEeCCCCCCCChHHHHHHHHHcCC
Confidence 44555555 677999999962 10 015678888899975 9999865444444778899999996
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=57.99 E-value=22 Score=34.83 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCEEE--EeCCCC
Q 019951 253 AEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 253 ~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
..+++++||+.|+.++ |.|+++
T Consensus 79 lr~la~~vh~~ga~~~~QL~H~G~ 102 (338)
T cd02933 79 WKKVTDAVHAKGGKIFLQLWHVGR 102 (338)
T ss_pred HHHHHHHHHhcCCeEEEEcccCcc
Confidence 5677788888887644 677654
No 89
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.59 E-value=23 Score=34.45 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHhCCEEE--EeCCCC
Q 019951 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
+....++++||+.|+.++ |.|.++
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G~ 107 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPGR 107 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCc
Confidence 345678888888888755 567554
No 90
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=57.55 E-value=30 Score=34.12 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEe-------C----CCCCHHHHHHHHHHHhhcCCCc
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY-------R----SDGKLVGVIFTLQDGSLFSLLP 319 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~-------~----~~~~~~~~~~~~~~a~~~~l~~ 319 (333)
+.+.++|+.|++.-|+.+.+-.+... .+..++|+++|+|..... | +.|+.++...+...+++.|+.+
T Consensus 118 ~~i~~~v~~Vk~~~~le~c~slG~l~--~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~v 195 (335)
T COG0502 118 EEVVEAIKAVKEELGLEVCASLGMLT--EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEV 195 (335)
T ss_pred HHHHHHHHHHHHhcCcHHhhccCCCC--HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCcc
Confidence 45778899999777899999988543 678999999999977651 2 3578888899999999999954
No 91
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=57.52 E-value=78 Score=30.03 Aligned_cols=63 Identities=5% Similarity=-0.016 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhc
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLF 315 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~ 315 (333)
.+..++...++|--.|+-|-..+.+..++++.+.+.|++-|-...|..+.+......+.+.-|
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gF 170 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGC 170 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCc
Confidence 455555555555444444422222234445555555666555555555555555555555433
No 92
>PRK07360 FO synthase subunit 2; Reviewed
Probab=57.41 E-value=26 Score=34.71 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHHHHHHHHh-CCEEEEeC-CC-------CC-CCcHHHHHHHHHcCCCEE-EE------------eCC-CCCHHHHHHH
Q 019951 253 AEVAVQLIHRT-GGLAVLAH-PW-------AL-KNPAAIIRKLKDVGLHGL-EV------------YRS-DGKLVGVIFT 308 (333)
Q Consensus 253 ~eevI~~I~~a-GGvaVLAH-P~-------~~-~~~~~li~~l~~~GlDGI-Ev------------~~~-~~~~~~~~~~ 308 (333)
+.++|+.|++. .++.+-|= |. .. ....+.+++|+++|+|.+ |. .+| ..+.++...+
T Consensus 127 ~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~ 206 (371)
T PRK07360 127 YLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEI 206 (371)
T ss_pred HHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHH
Confidence 34677777764 44544431 10 00 123567899999999877 21 123 3466778899
Q ss_pred HHHHhhcCC-Cccceeecccccc
Q 019951 309 LQDGSLFSL-LPLTVLFGHFQSN 330 (333)
Q Consensus 309 ~~~a~~~~l-~~~~~~~~~~~~~ 330 (333)
.+.|++.|+ .-+.++||+ |-|
T Consensus 207 i~~a~~~Gl~~~sg~i~G~-gEt 228 (371)
T PRK07360 207 VKTAHKLGLPTTSTMMYGH-VET 228 (371)
T ss_pred HHHHHHcCCCceeeEEeeC-CCC
Confidence 999999999 566788998 433
No 93
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=57.39 E-value=45 Score=33.91 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhC------CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHhh
Q 019951 253 AEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------DGKLVGVIFTLQDGSL 314 (333)
Q Consensus 253 ~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------~~~~~~~~~~~~~a~~ 314 (333)
++++++.|++.- -+.+-++|... ..+.+..|.++|+..|.+--- .++.++...+.+.+++
T Consensus 121 l~~ll~~l~~~~~~~~~~e~tie~np~~l--t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~ 198 (453)
T PRK09249 121 LRRLMALLREHFNFAPDAEISIEIDPREL--DLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARE 198 (453)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEecCCcC--CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 445555555431 13445555533 245566666666655544321 2344444555666666
Q ss_pred cCC
Q 019951 315 FSL 317 (333)
Q Consensus 315 ~~l 317 (333)
+|+
T Consensus 199 ~G~ 201 (453)
T PRK09249 199 LGF 201 (453)
T ss_pred cCC
Confidence 665
No 94
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=57.32 E-value=55 Score=32.24 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=56.8
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHh--C--CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------CC
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------DG 300 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a--G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------~~ 300 (333)
|++.|-|-..+.. .++++++.|++. . -+.+-++|.... .+.++.+.++|+.-|.+--- .|
T Consensus 61 y~GGGTPs~L~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~lt--~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~ 136 (353)
T PRK05904 61 YLGGGTPNCLNDQ--LLDILLSTIKPYVDNNCEFTIECNPELIT--QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTH 136 (353)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 5555544333222 145667777654 2 378889997654 67899999999876655422 36
Q ss_pred CHHHHHHHHHHHhhcCCCc--cceeecc
Q 019951 301 KLVGVIFTLQDGSLFSLLP--LTVLFGH 326 (333)
Q Consensus 301 ~~~~~~~~~~~a~~~~l~~--~~~~~~~ 326 (333)
+.++...+.+.+++.|+.. ..+.||-
T Consensus 137 ~~~~~~~ai~~lr~~G~~~v~~dlI~Gl 164 (353)
T PRK05904 137 TIQDSKEAINLLHKNGIYNISCDFLYCL 164 (353)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 7777788999999999852 3456664
No 95
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=57.01 E-value=56 Score=30.12 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEe
Q 019951 255 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY 296 (333)
Q Consensus 255 evI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~ 296 (333)
++|+.|++.+ .+.+-+|-. ..++...++.+.++|.|-|.+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm-~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM-VSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHHcCCCEEEEe
Confidence 3445555444 444444433 1233444455555555544333
No 96
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=56.43 E-value=15 Score=35.52 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCccceeec
Q 019951 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPLTVLFG 325 (333)
Q Consensus 251 ~~~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~~~~~~ 325 (333)
|...++++.|++.| |+.++=|.+. ...+++.+.+.|++++.+-+. .+..+..... +.+...|+.|. +++|
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~-~dl~e~k~~~g~~~~i~Gni~p~-~l~~ 287 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR-VDLDEARKRLGPKVALQGNLDPA-LLYA 287 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC-CCHHHHHHHhCCCeEEEeCCChh-hhcC
Confidence 55789999999997 7777766652 247899999999999877654 4554443333 35666677664 4554
No 97
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=56.37 E-value=26 Score=33.55 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHhC-CEEEEeCCCC------CCC-cHHHHHHHHHcCCCEEEEeCCCCC-H---HHHHHHHHHHhhcC
Q 019951 249 SEPLAEVAVQLIHRTG-GLAVLAHPWA------LKN-PAAIIRKLKDVGLHGLEVYRSDGK-L---VGVIFTLQDGSLFS 316 (333)
Q Consensus 249 ~~~~~eevI~~I~~aG-GvaVLAHP~~------~~~-~~~li~~l~~~GlDGIEv~~~~~~-~---~~~~~~~~~a~~~~ 316 (333)
....++|+|+-.++-| ||.++.|=-. +.. .++.++.+.+.||.||-+-+-... . ..+..+++.|.++.
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence 3477999999999998 6778887543 222 377889999999999999875443 2 33377788899998
Q ss_pred CC
Q 019951 317 LL 318 (333)
Q Consensus 317 l~ 318 (333)
|.
T Consensus 151 Lm 152 (273)
T PF10566_consen 151 LM 152 (273)
T ss_dssp -E
T ss_pred cE
Confidence 73
No 98
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.27 E-value=59 Score=31.87 Aligned_cols=72 Identities=11% Similarity=0.198 Sum_probs=51.6
Q ss_pred HHHHHHHHHHh--C--CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEe----CC--------CCCHHHHHHHHHHHhhcC
Q 019951 253 AEVAVQLIHRT--G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY----RS--------DGKLVGVIFTLQDGSLFS 316 (333)
Q Consensus 253 ~eevI~~I~~a--G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~----~~--------~~~~~~~~~~~~~a~~~~ 316 (333)
+++++++|++. . -+.+-++|.... .+.++.+.++|++-|.+- ++ .|+.++...+.+.+++.|
T Consensus 70 l~~ll~~i~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g 147 (350)
T PRK08446 70 YEPIFEIISPYLSKDCEITTEANPNSAT--KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAG 147 (350)
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 56777777764 2 256788997644 678999999998876554 21 367777788999999999
Q ss_pred CCcc--ceeecc
Q 019951 317 LLPL--TVLFGH 326 (333)
Q Consensus 317 l~~~--~~~~~~ 326 (333)
+..- .+.||-
T Consensus 148 ~~~v~iDli~Gl 159 (350)
T PRK08446 148 FENISIDLIYDT 159 (350)
T ss_pred CCEEEEEeecCC
Confidence 8533 456664
No 99
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=56.21 E-value=28 Score=34.59 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCEEE--EeCCCC
Q 019951 253 AEVAVQLIHRTGGLAV--LAHPWA 274 (333)
Q Consensus 253 ~eevI~~I~~aGGvaV--LAHP~~ 274 (333)
..+++++||+.|+.++ |.|+++
T Consensus 85 ~~~l~~~vh~~G~~i~~QL~H~G~ 108 (370)
T cd02929 85 LAAMTDAVHKHGALAGIELWHGGA 108 (370)
T ss_pred HHHHHHHHHHCCCeEEEecccCCC
Confidence 4567788888887654 677664
No 100
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.61 E-value=32 Score=31.92 Aligned_cols=42 Identities=7% Similarity=-0.105 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCEEEEeCCC---------CCHHHHHHHHHHHhhcCCCcc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSD---------GKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~---------~~~~~~~~~~~~a~~~~l~~~ 320 (333)
.+.++.+.++|++|||+.... .+......+.+.++++||...
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 345555566666666664211 123344555666666666433
No 101
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=55.48 E-value=19 Score=34.88 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCcc
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPL 320 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~ 320 (333)
|...++++.|++.|+.+++ |-+. +...+++.+.+.|+|++.+-+ ..+.++..... +.+-..|++|.
T Consensus 220 p~~k~i~~~i~~~g~~~il-H~CG--~~~~~~~~l~~~g~d~ls~d~-~~~l~~~~~~~g~~~~i~Gnidp~ 287 (340)
T TIGR01463 220 PYQKRLFAYIKEIGGITVL-HICG--FTQPILRDIANNGCFGFSVDM-KPGMDHAKRVIGGQASLVGNLSPF 287 (340)
T ss_pred HHHHHHHHHHHhcCCceEE-EECC--CchhhHHHHHHhCCCEEeecC-CCCHHHHHHHcCCceEEEecCChH
Confidence 4467889999999887776 6553 234678899999999877443 33444332221 12335555553
No 102
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=54.76 E-value=45 Score=31.06 Aligned_cols=43 Identities=7% Similarity=-0.106 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCEEEEeCCC---------CCHHHHHHHHHHHhhcCCCccc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSD---------GKLVGVIFTLQDGSLFSLLPLT 321 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~---------~~~~~~~~~~~~a~~~~l~~~~ 321 (333)
.+.++.+.++|++|||+.... .+......+.+.++++||....
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 567777788888888886432 1455667777788888875443
No 103
>PRK08392 hypothetical protein; Provisional
Probab=54.50 E-value=33 Score=31.10 Aligned_cols=60 Identities=8% Similarity=0.005 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCC---------CcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALK---------NPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~---------~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
+..+++| +.+.+-|+|||+... ...++++.+++.|+- ||+.....-+ ....++.|+++|.
T Consensus 107 ~~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~-lEiNt~~~~p--~~~~l~~~~~~G~ 175 (215)
T PRK08392 107 ELVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKA-FEISSRYRVP--DLEFIRECIKRGI 175 (215)
T ss_pred HHHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCE-EEEeCCCCCC--CHHHHHHHHHcCC
Confidence 3455556 568899999997321 114567788888865 9998643222 1356788888885
No 104
>PRK07328 histidinol-phosphatase; Provisional
Probab=54.23 E-value=25 Score=33.07 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCEEEEeCCCCCC-----Cc-------HHHHHHHHHcCCCEEEEeCCCC--C---HHHHHHHHHHHhhcCC
Q 019951 255 VAVQLIHRTGGLAVLAHPWALK-----NP-------AAIIRKLKDVGLHGLEVYRSDG--K---LVGVIFTLQDGSLFSL 317 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~-----~~-------~~li~~l~~~GlDGIEv~~~~~--~---~~~~~~~~~~a~~~~l 317 (333)
.++++|. .|.+-|||||+..+ .. .++++.+++.|+- ||+..+.- . .--....++.++++|.
T Consensus 145 ~~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g~~-lEiNt~~~r~~~~~~yp~~~il~~~~~~g~ 222 (269)
T PRK07328 145 LVEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAGLA-LEVNTAGLRKPVGEIYPSPALLRACRERGI 222 (269)
T ss_pred HHHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcCCE-EEEEchhhcCCCCCCCCCHHHHHHHHHcCC
Confidence 3555564 68899999998432 11 4567888888975 99997521 1 1112678899999986
No 105
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=53.77 E-value=65 Score=31.73 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=57.5
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHhCC------EEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTGG------LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------ 298 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aGG------vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------ 298 (333)
||+.|-|-..+. ..++++++.|++.-+ +.+-++|.... .+.++.+.++|++.|.+---
T Consensus 64 ~~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~--~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 139 (375)
T PRK05628 64 FVGGGTPSLLGA--EGLARVLDAVRDTFGLAPGAEVTTEANPESTS--PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDR 139 (375)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 455554433322 245778888887544 35568897643 68899999999987776532
Q ss_pred CCCHHHHHHHHHHHhhcCCC-c-cceeecccc
Q 019951 299 DGKLVGVIFTLQDGSLFSLL-P-LTVLFGHFQ 328 (333)
Q Consensus 299 ~~~~~~~~~~~~~a~~~~l~-~-~~~~~~~~~ 328 (333)
.++.++...+.+.+++.|+. . ..+.+|-=+
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg 171 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFEHVNLDLIYGTPG 171 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 25666778888899999984 2 234556433
No 106
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=53.55 E-value=54 Score=31.63 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=28.3
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEE
Q 019951 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLAL 107 (333)
Q Consensus 72 ~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laI 107 (333)
..++.+|+|+.. ||.-+++|++.+.++.--++|||
T Consensus 118 ~Tr~~vy~qPp~-~~~p~IKE~vR~~I~~A~kVIAI 152 (284)
T PF07894_consen 118 VTRATVYFQPPK-DGQPHIKEVVRRMIQQAQKVIAI 152 (284)
T ss_pred CceEEEEeCCCC-CCCCCHHHHHHHHHHHhcceeEE
Confidence 588999999977 88888888887777766666665
No 107
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=52.78 E-value=55 Score=32.73 Aligned_cols=90 Identities=8% Similarity=0.115 Sum_probs=57.0
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHhC------CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------ 298 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------ 298 (333)
||+.|-|-..+. ..++++++.|++.= -+.+=++|.... .+.++.+.++|++-|.+---
T Consensus 71 y~GGGTps~l~~--~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt--~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R 146 (400)
T PRK07379 71 FFGGGTPSLLSV--EQLERILTTLDQRFGIAPDAEISLEIDPGTFD--LEQLQGYRSLGVNRVSLGVQAFQDELLALCGR 146 (400)
T ss_pred EECCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCC
Confidence 455554433221 23567777777642 356678887643 57888999999876665432
Q ss_pred CCCHHHHHHHHHHHhhcCCC-c-cceeecccccc
Q 019951 299 DGKLVGVIFTLQDGSLFSLL-P-LTVLFGHFQSN 330 (333)
Q Consensus 299 ~~~~~~~~~~~~~a~~~~l~-~-~~~~~~~~~~~ 330 (333)
.|+.++...+.+.+++.|+. . ..+.||-=|-|
T Consensus 147 ~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 147 SHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 36777778888899999885 2 24566644433
No 108
>PRK04302 triosephosphate isomerase; Provisional
Probab=52.70 E-value=64 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=16.6
Q ss_pred HHHHHHcCCCEEEEeCC--CCCHHHHHHHHHHHhhcCCC
Q 019951 282 IRKLKDVGLHGLEVYRS--DGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 282 i~~l~~~GlDGIEv~~~--~~~~~~~~~~~~~a~~~~l~ 318 (333)
++++.++|+|||-+-++ .....+.....+.|+++||.
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~ 116 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLE 116 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCe
Confidence 44444555555544443 22333344444444444443
No 109
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.63 E-value=31 Score=29.19 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhC
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF 126 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITDHdt~~--g~~~~~~~a~~~ 126 (333)
-+..||++.++.|.+.+.+.++|+-.++.. ...++.+..++.
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 445899999999999999999998776433 234455555544
No 110
>PRK05660 HemN family oxidoreductase; Provisional
Probab=52.45 E-value=73 Score=31.58 Aligned_cols=89 Identities=10% Similarity=0.107 Sum_probs=59.8
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHh----C--CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCC-----------
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD----------- 299 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~----------- 299 (333)
||+.|.|...+. ..++++++.|++. . -+.+-++|.... .+.+..|.++|++-|.+--..
T Consensus 63 ~~GGGtPs~l~~--~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~--~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r 138 (378)
T PRK05660 63 FIGGGTPSLFSA--EAIQRLLDGVRARLPFAPDAEITMEANPGTVE--ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGR 138 (378)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCC--HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCC
Confidence 556555543321 2356778888773 2 367788997654 578999999999877775432
Q ss_pred -CCHHHHHHHHHHHhhcCCCc--cceeeccccc
Q 019951 300 -GKLVGVIFTLQDGSLFSLLP--LTVLFGHFQS 329 (333)
Q Consensus 300 -~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~ 329 (333)
|+.++...+.+.+++.|+.. ..+.||-=+.
T Consensus 139 ~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 139 IHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 56677788899999999954 3356664443
No 111
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.72 E-value=50 Score=28.21 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCC
Q 019951 88 LSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGM 128 (333)
Q Consensus 88 ~sp~eli~~A~~~Gl~~laITDHdt~~g--~~~~~~~a~~~gi 128 (333)
.+|+++++.|++.+.+.++++-..+..- ..+..+.+++.|+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 7999999999999999999998877543 5566666666665
No 112
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=51.71 E-value=26 Score=34.28 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCE-EEEeCCCCCCC---c----H---HHHHHHHH-cCCCEEEEeCC
Q 019951 253 AEVAVQLIHRTGGL-AVLAHPWALKN---P----A---AIIRKLKD-VGLHGLEVYRS 298 (333)
Q Consensus 253 ~eevI~~I~~aGGv-aVLAHP~~~~~---~----~---~li~~l~~-~GlDGIEv~~~ 298 (333)
..+.+++|.++||+ .|.++|...+. . + +-|..+++ .|+|.|=+-+.
T Consensus 204 ~D~qlkaI~~~gGvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsD 261 (313)
T COG2355 204 SDEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSD 261 (313)
T ss_pred CHHHHHHHHhcCCEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEeccc
Confidence 36789999999998 78889875541 1 2 22344443 36776655443
No 113
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=51.57 E-value=83 Score=30.96 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHh----C--CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHh
Q 019951 252 LAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------DGKLVGVIFTLQDGS 313 (333)
Q Consensus 252 ~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------~~~~~~~~~~~~~a~ 313 (333)
.++++++.|++. + -+.+-++|.... .+.++.+.++|+..|.+--- .|+.++...+.+.++
T Consensus 69 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~--~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~ 146 (377)
T PRK08599 69 QLERLLTAIHRNLPLSGLEEFTFEANPGDLT--KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAK 146 (377)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 467788888875 2 367789997653 68899999999977765532 356677788899999
Q ss_pred hcCCCc--cceeecccc
Q 019951 314 LFSLLP--LTVLFGHFQ 328 (333)
Q Consensus 314 ~~~l~~--~~~~~~~~~ 328 (333)
+.|+.. ..+.||-=+
T Consensus 147 ~~g~~~v~~dli~GlPg 163 (377)
T PRK08599 147 KAGFDNISIDLIYALPG 163 (377)
T ss_pred HcCCCcEEEeeecCCCC
Confidence 999842 235566433
No 114
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=51.51 E-value=39 Score=31.35 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCC------C-----cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALK------N-----PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~------~-----~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
..+.+...-..+-+-|||||+... . ..++++.+.+.|+- +|+..+.+......+.+++|+++|+
T Consensus 113 ~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a-leins~~~~~~~~~~~~~~~~e~G~ 187 (237)
T COG1387 113 YTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGKA-LEINSRPGRLDPNSEILRLARELGV 187 (237)
T ss_pred HHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCcE-EeecCCcCccCchHHHHHHHHHhCC
Confidence 345666666677889999998531 1 14567777777775 9999987888888999999999987
No 115
>PTZ00413 lipoate synthase; Provisional
Probab=51.39 E-value=2.8e+02 Score=28.15 Aligned_cols=64 Identities=8% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHHHHHHHh--CCEEEEeCCC-CCCCc----HHHHHHHHHcCCCEEEEe-C-----------CCCCHHHHHHHHHHHhh
Q 019951 254 EVAVQLIHRT--GGLAVLAHPW-ALKNP----AAIIRKLKDVGLHGLEVY-R-----------SDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 254 eevI~~I~~a--GGvaVLAHP~-~~~~~----~~li~~l~~~GlDGIEv~-~-----------~~~~~~~~~~~~~~a~~ 314 (333)
-++|+.+++. +|+.+-.|-. -+.+. .+++..|.+.|+|-+-+- | .+-+++++.++.++|++
T Consensus 281 Le~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~ 360 (398)
T PTZ00413 281 LKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMK 360 (398)
T ss_pred HHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHH
Confidence 3566666664 6777766632 12222 457788899999988872 1 14578899999999999
Q ss_pred cCC
Q 019951 315 FSL 317 (333)
Q Consensus 315 ~~l 317 (333)
.||
T Consensus 361 ~Gf 363 (398)
T PTZ00413 361 MGF 363 (398)
T ss_pred cCC
Confidence 998
No 116
>PLN02433 uroporphyrinogen decarboxylase
Probab=51.22 E-value=26 Score=34.24 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHh-CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCccceeecc
Q 019951 251 PLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPLTVLFGH 326 (333)
Q Consensus 251 ~~~eevI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~~~~~~~ 326 (333)
|...++++.|++. ++++++-|++.. ..+++.+.+.|.|+|-+-+. .+..+..... +.+...|+.|. +++|.
T Consensus 217 P~~k~i~~~i~~~~~~~~~ilh~cG~---~~~~~~~~~~~~~~i~~d~~-~dl~e~~~~~g~~~~l~GNi~p~-ll~gt 290 (345)
T PLN02433 217 PYLEKIVDEVKARHPDVPLILYANGS---GGLLERLAGTGVDVIGLDWT-VDMADARRRLGSDVAVQGNVDPA-VLFGS 290 (345)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCC---HHHHHHHHhcCCCEEEcCCC-CCHHHHHHHhCCCeEEEeCCCch-hhCCC
Confidence 5578899999987 467777798753 36789999999998876554 4555553333 36677788774 55553
No 117
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.96 E-value=50 Score=30.65 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCEEEEeC--CCC-CCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 019951 253 AEVAVQLIHRTGGLAVLAH--PWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQD 311 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAH--P~~-~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~ 311 (333)
.++.++...++|.-.|+-| |.. .....++++.+.+.|++.+-+.+|..+.+....+...
T Consensus 90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~ 151 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL 151 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 4444555555554444444 111 1122344455555555555555555444444444443
No 118
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=50.38 E-value=16 Score=32.60 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=40.0
Q ss_pred EEceeeeCcCC--CC------------------CCCHHHHHHHHHHcCCcEEEEecCCCCC-----CHHHHHHHHHhC-C
Q 019951 74 VFELHSHSNFS--DG------------------YLSPSKLVERAHCNGVKVLALTDHDTMS-----GIPEAIETARRF-G 127 (333)
Q Consensus 74 ~~DLH~HT~~S--DG------------------~~sp~eli~~A~~~Gl~~laITDHdt~~-----g~~~~~~~a~~~-g 127 (333)
.+|.|+|...+ .+ .....+.+..+.+.|+..+...-+.... ....+.+.++.. +
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 37899998765 22 2346778888999998877754433222 234556666665 6
Q ss_pred CEEEEEEEEe
Q 019951 128 MKIIPGVEIS 137 (333)
Q Consensus 128 i~~i~GiEis 137 (333)
+.++.+..+.
T Consensus 81 ~~~~~~~~~~ 90 (275)
T cd01292 81 IRVVLGLGIP 90 (275)
T ss_pred eeeEEeccCC
Confidence 6666555443
No 119
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=26 Score=34.69 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHhCCEE-E----EeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 252 LAEVAVQLIHRTGGLA-V----LAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 252 ~~eevI~~I~~aGGva-V----LAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
.++++|+..|++|-.. | +.|+.....-...++.|.++|+|+|++..+
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dp 101 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADP 101 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCH
Confidence 4789999999999932 2 334433222256889999999999999764
No 120
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=49.52 E-value=74 Score=29.52 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCEEEEeCCCCCCC---cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccceeec
Q 019951 255 VAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLTVLFG 325 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 325 (333)
+++++..++=|++.+-.|..... ...+.+.+.+.|+++| |+-.-.+..+..+.-+.|.+.|+.|..-++|
T Consensus 48 ~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~v-v~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~ 120 (223)
T TIGR00290 48 HLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAV-VFGAIYSEYQKTRIERVCRELGLKSFAPLWH 120 (223)
T ss_pred HHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEE-EECCcccHHHHHHHHHHHHhcCCEEeccccC
Confidence 78899999989987655432111 1345566677799987 6666677888899999999999988877765
No 121
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=48.43 E-value=42 Score=37.02 Aligned_cols=72 Identities=19% Similarity=0.342 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhCCEEEEeCCCC--CCCcHHHHHHHHHcCCC-------------------------EEEEeCC-CC
Q 019951 249 SEPLAEVAVQLIHRTGGLAVLAHPWA--LKNPAAIIRKLKDVGLH-------------------------GLEVYRS-DG 300 (333)
Q Consensus 249 ~~~~~eevI~~I~~aGGvaVLAHP~~--~~~~~~li~~l~~~GlD-------------------------GIEv~~~-~~ 300 (333)
.+++++++|...+.+|.=+| ||+- +....+..+.-.+.||- ||-|... ..
T Consensus 65 aYL~IdeII~iAk~~gaDaI--hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~ 142 (1149)
T COG1038 65 AYLSIDEIIRIAKRSGADAI--HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDG 142 (1149)
T ss_pred HhccHHHHHHHHHHcCCCee--cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCC
Confidence 46889999999999997766 8872 22223333333444431 2224433 34
Q ss_pred CHHHHHHHHHHHhhcCCCcccee
Q 019951 301 KLVGVIFTLQDGSLFSLLPLTVL 323 (333)
Q Consensus 301 ~~~~~~~~~~~a~~~~l~~~~~~ 323 (333)
+++....+.++|+.+|+ |.-+|
T Consensus 143 ~~~~~ee~~~fa~~~gy-PvmiK 164 (1149)
T COG1038 143 PIETIEEALEFAEEYGY-PVMIK 164 (1149)
T ss_pred CcccHHHHHHHHHhcCC-cEEEE
Confidence 56668889999999998 76665
No 122
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=48.37 E-value=30 Score=33.02 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCcc
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPL 320 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~ 320 (333)
|...++++.|++.|+ .+.-|.+. +...+++.+.++|+|.+-+-+. .+..+..... +.+-..|+.|.
T Consensus 208 p~~k~i~~~i~~~g~-~~~lH~cG--~~~~~~~~l~~~~~d~~~~d~~-~dl~~~~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 208 PYLKKVFDAIKALGG-PVIHHNCG--DTAPILELMADLGADVFSIDVT-VDLAEAKKKVGDKACLMGNLDPI 275 (330)
T ss_pred HHHHHHHHHHHHcCC-ceEEEECC--CchhHHHHHHHhCCCeEeeccc-CCHHHHHHHhCCceEEEeCcChH
Confidence 556889999999854 55558774 3346899999999998765443 3444443332 24555666554
No 123
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=48.06 E-value=34 Score=34.19 Aligned_cols=45 Identities=18% Similarity=0.020 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEeC----CCCCHH-----HHHHHHHHHhhcCCCcccee
Q 019951 279 AAIIRKLKDVGLHGLEVYR----SDGKLV-----GVIFTLQDGSLFSLLPLTVL 323 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~----~~~~~~-----~~~~~~~~a~~~~l~~~~~~ 323 (333)
.+.+..++++|++|||++. |...+. ....+.+..+++||....+.
T Consensus 35 ~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 35 VEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred HHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEee
Confidence 5678888999999999883 333222 13677888889998644443
No 124
>PRK09989 hypothetical protein; Provisional
Probab=47.41 E-value=39 Score=31.18 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCcc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~ 320 (333)
.+.++.+.++|+||||+..+.. .....+.++.+++||.+.
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~--~~~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD--YSTLQIQKQLEQNHLTLA 57 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc--CCHHHHHHHHHHcCCcEE
Confidence 4556666677777777654321 112445555666666444
No 125
>PRK09358 adenosine deaminase; Provisional
Probab=47.36 E-value=18 Score=35.02 Aligned_cols=29 Identities=41% Similarity=0.603 Sum_probs=26.0
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~ 104 (333)
.+++||+|- ||+++|+.|.+.|+++|++.
T Consensus 11 pK~eLH~Hl---~Gs~~~~~l~~l~~~~~~~~ 39 (340)
T PRK09358 11 PKAELHLHL---DGSLRPETILELARRNGIAL 39 (340)
T ss_pred CceeEEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 689999995 78899999999999999874
No 126
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=46.96 E-value=91 Score=32.27 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhC----CE---EEEe-CCCCCCCcHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHH
Q 019951 253 AEVAVQLIHRTG----GL---AVLA-HPWALKNPAAIIRKLKDVGLHGLEVYRS------------DGKLVGVIFTLQDG 312 (333)
Q Consensus 253 ~eevI~~I~~aG----Gv---aVLA-HP~~~~~~~~li~~l~~~GlDGIEv~~~------------~~~~~~~~~~~~~a 312 (333)
++++++.|.+.- ++ .+-+ +|.... .+.++.|.++|++.|.+--- .|+.++...+.+.+
T Consensus 237 L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it--~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~a 314 (488)
T PRK08207 237 LERLLEEIYENFPDVKNVKEFTVEAGRPDTIT--EEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCCCCC--HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 567777776652 22 3334 787543 67899999999987776532 36778888999999
Q ss_pred hhcCCCc--cceeecc
Q 019951 313 SLFSLLP--LTVLFGH 326 (333)
Q Consensus 313 ~~~~l~~--~~~~~~~ 326 (333)
++.|+.. ..+.||-
T Consensus 315 r~~Gf~~In~DLI~GL 330 (488)
T PRK08207 315 REMGFDNINMDLIIGL 330 (488)
T ss_pred HhCCCCeEEEEEEeCC
Confidence 9999832 2455664
No 127
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=46.89 E-value=2.8e+02 Score=26.87 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=44.3
Q ss_pred HHHHHHHHHhC-CEEEEeCCC-CCCCc----HHHHHHHHHcCCCEEEEeC---C---------CCCHHHHHHHHHHHhhc
Q 019951 254 EVAVQLIHRTG-GLAVLAHPW-ALKNP----AAIIRKLKDVGLHGLEVYR---S---------DGKLVGVIFTLQDGSLF 315 (333)
Q Consensus 254 eevI~~I~~aG-GvaVLAHP~-~~~~~----~~li~~l~~~GlDGIEv~~---~---------~~~~~~~~~~~~~a~~~ 315 (333)
-++++.+++.+ |+.+-++-. -+.+. .+.+..+.+.|+|-+-+.- | +.+++++.++.++|.+.
T Consensus 194 Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~ 273 (302)
T TIGR00510 194 LKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEM 273 (302)
T ss_pred HHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHc
Confidence 36788888873 665544321 11222 4577888999999777762 2 34788889999999999
Q ss_pred CC
Q 019951 316 SL 317 (333)
Q Consensus 316 ~l 317 (333)
||
T Consensus 274 gf 275 (302)
T TIGR00510 274 GF 275 (302)
T ss_pred CC
Confidence 98
No 128
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=46.45 E-value=85 Score=30.78 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhC-CEEEEeC-CCC-------CC-CcHHHHHHHHHcCCC-----EEEEeC--------CCC-CHHHHHHH
Q 019951 253 AEVAVQLIHRTG-GLAVLAH-PWA-------LK-NPAAIIRKLKDVGLH-----GLEVYR--------SDG-KLVGVIFT 308 (333)
Q Consensus 253 ~eevI~~I~~aG-GvaVLAH-P~~-------~~-~~~~li~~l~~~GlD-----GIEv~~--------~~~-~~~~~~~~ 308 (333)
..++++.|++.. .+.+-+- |.. .. ...+.+.+|+++|+| |+|.++ +.+ +.++...+
T Consensus 114 ~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~ 193 (351)
T TIGR03700 114 YLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEI 193 (351)
T ss_pred HHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHH
Confidence 457888898875 5666542 210 11 235678999999975 677765 223 44555688
Q ss_pred HHHHhhcCC-Cccceeecc
Q 019951 309 LQDGSLFSL-LPLTVLFGH 326 (333)
Q Consensus 309 ~~~a~~~~l-~~~~~~~~~ 326 (333)
.+.|++.|+ .-.++.||+
T Consensus 194 i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 194 HRTAHELGLKTNATMLYGH 212 (351)
T ss_pred HHHHHHcCCCcceEEEeeC
Confidence 999999998 445668886
No 129
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=46.42 E-value=7.8 Score=39.05 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=11.5
Q ss_pred CCEEEEeCCCCC-HHHHHHHHHH
Q 019951 290 LHGLEVYRSDGK-LVGVIFTLQD 311 (333)
Q Consensus 290 lDGIEv~~~~~~-~~~~~~~~~~ 311 (333)
++|+||..-.-+ .+..+.+..+
T Consensus 276 ~~~~EV~~i~~P~~e~~~~y~~~ 298 (396)
T PF09692_consen 276 ICGFEVTSIHLPSEEVRQFYKSV 298 (396)
T ss_pred cceeEEEeeeCCCHHHHHHHHhc
Confidence 467777654433 3333555555
No 130
>PRK06267 hypothetical protein; Provisional
Probab=45.94 E-value=42 Score=33.00 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCE-EEEeCC--------CCCHHHHHHHHHHHhhcCCC-ccc
Q 019951 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHG-LEVYRS--------DGKLVGVIFTLQDGSLFSLL-PLT 321 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDG-IEv~~~--------~~~~~~~~~~~~~a~~~~l~-~~~ 321 (333)
.++++++.|+..++..+.+.++... ...+..+...|++| +|.+++ .++.++.....+.|++.|+. -..
T Consensus 95 el~~i~e~I~~~~~~~~~~s~G~~d--~~~~~~~~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g 172 (350)
T PRK06267 95 EINDIAEMIAYIQGCKQYLNVGIID--FLNINLNEIEGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGIT 172 (350)
T ss_pred HHHHHHHHHHHhhCCceEeecccCC--HHHHhhccccCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeee
Confidence 3567777787777765666665432 12233333445433 677643 46677778888888888873 245
Q ss_pred eeecc
Q 019951 322 VLFGH 326 (333)
Q Consensus 322 ~~~~~ 326 (333)
+.+|.
T Consensus 173 ~IiGl 177 (350)
T PRK06267 173 IILGL 177 (350)
T ss_pred EEEeC
Confidence 67773
No 131
>PRK08609 hypothetical protein; Provisional
Probab=45.83 E-value=49 Score=34.93 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHhCCEEEEeCCCC-----CCC----cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 260 IHRTGGLAVLAHPWA-----LKN----PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 260 I~~aGGvaVLAHP~~-----~~~----~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
+.+.|.+.|+|||.+ +.. .+.+++.+++.|+- ||+..+..........++.++++|+
T Consensus 454 a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~-lEINa~~~r~~~~~~~~~~~~e~Gv 519 (570)
T PRK08609 454 ACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTA-LELNANPNRLDLSAEHLKKAQEAGV 519 (570)
T ss_pred HhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCE-EEEcCCccccCccHHHHHHHHHcCC
Confidence 335788999999984 111 14566777888875 9999764333335778888888886
No 132
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=45.82 E-value=1.2e+02 Score=30.57 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCC-------EEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHh
Q 019951 253 AEVAVQLIHRTGG-------LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------DGKLVGVIFTLQDGS 313 (333)
Q Consensus 253 ~eevI~~I~~aGG-------vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------~~~~~~~~~~~~~a~ 313 (333)
+++.+++|++.-+ +.+-++|... ..+.++.|.++|+.-|++--- .|+.++...+.+.++
T Consensus 110 l~~Ll~~i~~~~~~~~~~~eitiE~~P~~l--t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~ 187 (430)
T PRK08208 110 LEKLFDSVERVLGVDLGNIPKSVETSPATT--TAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIR 187 (430)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEeCcCcC--CHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4677777776532 4566888764 368899999999887766532 256677788899999
Q ss_pred hcCCCcc--ceeecccccc
Q 019951 314 LFSLLPL--TVLFGHFQSN 330 (333)
Q Consensus 314 ~~~l~~~--~~~~~~~~~~ 330 (333)
++|+... .+.||--+-|
T Consensus 188 ~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 188 AAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HcCCCeEEEEeecCCCCCC
Confidence 9998542 5677755444
No 133
>PRK15452 putative protease; Provisional
Probab=44.78 E-value=1.1e+02 Score=31.40 Aligned_cols=70 Identities=13% Similarity=-0.021 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHhCCEEEEeCCCCCCCc-----HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccceeecc
Q 019951 252 LAEVAVQLIHRTGGLAVLAHPWALKNP-----AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLTVLFGH 326 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~-----~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 326 (333)
.++++|+.+|+.|.-+.++=|....+. ...++.+.+.|+|||=|..+ -+.+++++.. |..-..++
T Consensus 47 dl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~--------G~l~~~ke~~--p~l~ih~s 116 (443)
T PRK15452 47 NLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDP--------GLIMMVREHF--PEMPIHLS 116 (443)
T ss_pred HHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCH--------HHHHHHHHhC--CCCeEEEE
Confidence 367899999999988888766443321 34577888999999987653 2234444432 44455666
Q ss_pred ccccC
Q 019951 327 FQSNA 331 (333)
Q Consensus 327 ~~~~~ 331 (333)
+|+|.
T Consensus 117 tqlni 121 (443)
T PRK15452 117 VQANA 121 (443)
T ss_pred ecccC
Confidence 66664
No 134
>PRK09248 putative hydrolase; Validated
Probab=44.51 E-value=1.5e+02 Score=27.31 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHH---HHHHHHHhhcCCCccc
Q 019951 280 AIIRKLKDVGLHGLEVYRSDGKLVGV---IFTLQDGSLFSLLPLT 321 (333)
Q Consensus 280 ~li~~l~~~GlDGIEv~~~~~~~~~~---~~~~~~a~~~~l~~~~ 321 (333)
.++..+.+.|+- +-+-+..|+++++ ..+.++|+++||.+..
T Consensus 176 ~~~~~~~~~g~~-~~~gSDAH~~~~vg~~~~~~~~~~~~g~~~~~ 219 (246)
T PRK09248 176 AIAALCKKAGVW-VALGSDAHIAFDIGNFEEALKILDEVGFPEER 219 (246)
T ss_pred HHHHHHHHcCCe-EEEeCCCCChhhhccHHHHHHHHHHcCCCHHH
Confidence 455666666665 5555666666555 5566667777765443
No 135
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.40 E-value=54 Score=30.42 Aligned_cols=65 Identities=11% Similarity=-0.016 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
++..++...++|.-.++.|..-+....++++.+.+.|++-+-+..|..+.+....+...+..|=+
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy 157 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIY 157 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEE
Confidence 47788888888876666632212223467788888999988888888887777777766555543
No 136
>PRK01060 endonuclease IV; Provisional
Probab=44.27 E-value=56 Score=30.37 Aligned_cols=40 Identities=3% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCEEEEeCC--------CCCHHHHHHHHHHHhhcCCC
Q 019951 279 AAIIRKLKDVGLHGLEVYRS--------DGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~--------~~~~~~~~~~~~~a~~~~l~ 318 (333)
.+.++.+.++|+||||++-. ..+.+......+.+.++||.
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 55677777788888887621 22444556666777777764
No 137
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=44.03 E-value=58 Score=35.13 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEE
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 293 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI 293 (333)
+.+.|+++|++|--|..-==...-..++..+.+.+.|||+|
T Consensus 292 ak~lvd~~H~~GkeAmmFlgD~WIGtEPy~~~F~~iGlDav 332 (719)
T TIGR02336 292 AKELVDMSHAAGKEAMMFLGDQWIGTEPYKDGFDEIGLDAV 332 (719)
T ss_pred HHHHHHHHHhcCceEEEeccCceeccccchhhhhhcCcceE
Confidence 78999999999987654211111112556788889999886
No 138
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=43.80 E-value=60 Score=23.42 Aligned_cols=39 Identities=18% Similarity=0.509 Sum_probs=25.0
Q ss_pred cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 278 PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 278 ~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
+.++++.+.+.|++.|=+ ...++......+.+.++++|+
T Consensus 17 ~~~~~~~a~~~g~~~v~i-TDh~~~~~~~~~~~~~~~~gi 55 (67)
T smart00481 17 PEELVKRAKELGLKAIAI-TDHGNLFGAVEFYKAAKKAGI 55 (67)
T ss_pred HHHHHHHHHHcCCCEEEE-eeCCcccCHHHHHHHHHHcCC
Confidence 466777778888886633 333455555666677777665
No 139
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=43.54 E-value=22 Score=34.03 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=23.8
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCc
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (333)
.++|||+|- +|+++++.|++.|++.++.
T Consensus 3 pK~eLH~HL---~Gsi~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 3 PKAELHIHL---DGSISPETLLELAKKNNIC 30 (331)
T ss_dssp -EEEEEEEG---GGSS-HHHHHHHHHHCTCC
T ss_pred CEEEeeeCC---ccCCCHHHHHHHHHhCCCC
Confidence 589999995 7889999999999999976
No 140
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=42.78 E-value=67 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCC-Cccceeecc
Q 019951 304 GVIFTLQDGSLFSL-LPLTVLFGH 326 (333)
Q Consensus 304 ~~~~~~~~a~~~~l-~~~~~~~~~ 326 (333)
+...+.+.|.+.|+ .-.+++||+
T Consensus 150 ~~l~~i~~a~~~Gi~~~s~~i~G~ 173 (322)
T TIGR03550 150 VRLETIEDAGRLKIPFTTGILIGI 173 (322)
T ss_pred HHHHHHHHHHHcCCCccceeeEeC
Confidence 34455555555555 334455554
No 141
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=42.57 E-value=97 Score=30.69 Aligned_cols=90 Identities=10% Similarity=0.155 Sum_probs=57.3
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHh----C--CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEe----CC--------
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY----RS-------- 298 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~----~~-------- 298 (333)
||+.|-|-+.+.. .+++.+++|++. . -+.+=|+|.... .+.++.|.++|++-|++- ++
T Consensus 60 y~GGGTPs~l~~~--~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R 135 (380)
T PRK09057 60 FFGGGTPSLMQPE--TVAALLDAIARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSLGVQALNDADLRFLGR 135 (380)
T ss_pred EeCCCccccCCHH--HHHHHHHHHHHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 5666555443321 256778888773 2 478889998654 578999999999765554 32
Q ss_pred CCCHHHHHHHHHHHhhcCCCcc-ceeecccccc
Q 019951 299 DGKLVGVIFTLQDGSLFSLLPL-TVLFGHFQSN 330 (333)
Q Consensus 299 ~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~ 330 (333)
.|+.++...+.+.+++.+...+ .+.||--|-|
T Consensus 136 ~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 136 LHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred CCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 3577777778888887743222 3466654443
No 142
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=42.51 E-value=68 Score=30.09 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhC------CE-EEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHhhcCCCcc
Q 019951 253 AEVAVQLIHRTG------GL-AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD--GKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 253 ~eevI~~I~~aG------Gv-aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~--~~~~~~~~~~~~a~~~~l~~~ 320 (333)
+++-|+..|+.| |. .++||-- +..++.++++.++|++.||+.... .+.++...+...|.+-||.++
T Consensus 62 V~ekid~y~e~~i~v~pGGtlfe~a~~~--~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vl 136 (258)
T COG1809 62 VKEKIDMYKENDIYVFPGGTLFEIAYSQ--DKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVL 136 (258)
T ss_pred HHHHHHHHHHcCceecCCceEEEeehhc--ccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEe
Confidence 567778888764 43 4455532 344789999999999999999864 577778888888888888554
No 143
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=42.35 E-value=1.1e+02 Score=28.79 Aligned_cols=64 Identities=11% Similarity=-0.070 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCc
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLP 319 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~ 319 (333)
-+-|..++++--+|||. .+.. .+...+.++.++|-|+|-+.-..-+..++....+.|+.+|+++
T Consensus 100 ~~~l~~v~~~v~iPvl~-kdfi-~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~ 163 (260)
T PRK00278 100 LEYLRAARAAVSLPVLR-KDFI-IDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDV 163 (260)
T ss_pred HHHHHHHHHhcCCCEEe-eeec-CCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeE
Confidence 35667777776788885 2211 2234688889999999999887767788899999999999864
No 144
>PRK08445 hypothetical protein; Provisional
Probab=42.31 E-value=69 Score=31.56 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCC-EEEEeC-CC------CC-CC-cHHHHHHHHHcCCC-----EEEEeC--------C-CCCHHHHHHH
Q 019951 253 AEVAVQLIHRTGG-LAVLAH-PW------AL-KN-PAAIIRKLKDVGLH-----GLEVYR--------S-DGKLVGVIFT 308 (333)
Q Consensus 253 ~eevI~~I~~aGG-vaVLAH-P~------~~-~~-~~~li~~l~~~GlD-----GIEv~~--------~-~~~~~~~~~~ 308 (333)
..+.++.|++..- +.+.|= |. .. .. ..+.+.+|+++|++ |+|... | ..+.++...+
T Consensus 108 ~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~ 187 (348)
T PRK08445 108 YENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEV 187 (348)
T ss_pred HHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHH
Confidence 4678888888864 666541 11 10 11 26789999999986 588333 3 4567777899
Q ss_pred HHHHhhcCC-Cccceeeccc
Q 019951 309 LQDGSLFSL-LPLTVLFGHF 327 (333)
Q Consensus 309 ~~~a~~~~l-~~~~~~~~~~ 327 (333)
.+.|++.|+ .-.+..||+=
T Consensus 188 i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 188 HRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred HHHHHHcCCeeeeEEEecCC
Confidence 999999999 5566788863
No 145
>PRK05927 hypothetical protein; Provisional
Probab=41.84 E-value=25 Score=34.81 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCC-----EEEEeCCC-------C--CHHHHHHHHHHHhhcCC-CccceeeccccccC
Q 019951 279 AAIIRKLKDVGLH-----GLEVYRSD-------G--KLVGVIFTLQDGSLFSL-LPLTVLFGHFQSNA 331 (333)
Q Consensus 279 ~~li~~l~~~GlD-----GIEv~~~~-------~--~~~~~~~~~~~a~~~~l-~~~~~~~~~~~~~~ 331 (333)
.+.+..|+++|++ |+|+..+. | ++++...+.+.|.+.|+ .-++.+||+ |-|.
T Consensus 147 ~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~-gEt~ 213 (350)
T PRK05927 147 EQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGH-VESP 213 (350)
T ss_pred HHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEee-CCCH
Confidence 5677888888887 77766531 2 35777888899999998 566788888 5553
No 146
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.73 E-value=94 Score=26.37 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCC
Q 019951 88 LSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (333)
Q Consensus 88 ~sp~eli~~A~~~Gl~~laITDHdt~~--g~~~~~~~a~~~gi 128 (333)
.+|+++++.|.+.+.+.++++-..+.. ...+..+..++.++
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 789999999999999999999877654 34455555555554
No 147
>PTZ00124 adenosine deaminase; Provisional
Probab=41.40 E-value=24 Score=35.13 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=25.7
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~ 104 (333)
.+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 36 PKvELH~HL---dGsi~~~tl~~La~~~~~~~ 64 (362)
T PTZ00124 36 PKCELHCHL---DLCFSVDFFLSCIRKYNLQP 64 (362)
T ss_pred CceeEeecc---cCCCCHHHHHHHHHHcCCCC
Confidence 589999995 78899999999999999754
No 148
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=41.37 E-value=1.2e+02 Score=29.87 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=25.6
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC----C--------CCCHHHHHHHHHHHhhcCC
Q 019951 266 LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR----S--------DGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 266 vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~----~--------~~~~~~~~~~~~~a~~~~l 317 (333)
+.+-++|.... ++.++.|.++|+.-|.+-- + .|+.++...+.+.+++.|+
T Consensus 88 itie~~p~~~t--~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~ 149 (374)
T PRK05799 88 FTVEGNPGTFT--EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGF 149 (374)
T ss_pred EEEEeCCCcCC--HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 34455665432 4556666666654443322 1 1344555555666666665
No 149
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.90 E-value=81 Score=28.94 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcC
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFS 316 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~ 316 (333)
..++++.+.+.+=++|+-.+.. ..-.++.+.+.+.|++.||+-.... .-..-...+.++|.
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p 65 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVP 65 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCC
Confidence 3467788998898899976532 1124678889999999999995443 33444445555553
No 150
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.73 E-value=1.2e+02 Score=29.17 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHH-HhCC-EEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---C-HHHHHHHHHHHhhcCC
Q 019951 256 AVQLIH-RTGG-LAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---K-LVGVIFTLQDGSLFSL 317 (333)
Q Consensus 256 vI~~I~-~aGG-vaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~-~~~~~~~~~~a~~~~l 317 (333)
+++.+. .++| ++|+|+-+.... ..++.+.+.+.|+|||=+..|+. + ...++.....|+.-++
T Consensus 62 v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~l 131 (299)
T COG0329 62 VLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDL 131 (299)
T ss_pred HHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCC
Confidence 444443 3466 789999886542 24567788899999999998863 2 2223666777777765
No 151
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=40.62 E-value=66 Score=26.06 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEE
Q 019951 84 SDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKI 130 (333)
Q Consensus 84 SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~ 130 (333)
|-.+...-+.++.|+++|.+.++||+-. ++.+.+.+.++..
T Consensus 53 SG~t~e~i~~~~~a~~~g~~iI~IT~~~------~l~~~~~~~~~~~ 93 (119)
T cd05017 53 SGNTEETLSAVEQAKERGAKIVAITSGG------KLLEMAREHGVPV 93 (119)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCc------hHHHHHHHcCCcE
Confidence 3344567789999999999999999632 2445555555443
No 152
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=40.44 E-value=1.1e+02 Score=27.42 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCc
Q 019951 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLP 319 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~ 319 (333)
+-+..|++.=.++|+.. .+-.....++.+.+.|.|||=+..+..+.+....+.+.+..+|+++
T Consensus 62 ~~~~~i~~~v~iPi~~~--~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~ 124 (217)
T cd00331 62 EDLRAVREAVSLPVLRK--DFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEV 124 (217)
T ss_pred HHHHHHHHhcCCCEEEC--CeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeE
Confidence 34455555445666642 1112234566677777777776666666555566666666666643
No 153
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.39 E-value=1.6e+02 Score=27.55 Aligned_cols=64 Identities=11% Similarity=-0.007 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh-CCE--EEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 019951 253 AEVAVQLIHRT-GGL--AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 253 ~eevI~~I~~a-GGv--aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~ 318 (333)
..++++.+.+. .+. .++..|++.. ...++.+.+.|+|.|-++.+.+.......+.++|+..|+.
T Consensus 61 ~~e~i~~~~~~~~~~~~~~~~~~~~~~--~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~ 127 (263)
T cd07943 61 DEEYLEAAAEALKQAKLGVLLLPGIGT--VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMD 127 (263)
T ss_pred hHHHHHHHHHhccCCEEEEEecCCccC--HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCe
Confidence 45677777554 443 4455565433 3557888899999999988888777788889999998873
No 154
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=39.75 E-value=70 Score=31.02 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCC-----EEEEeCC---------CCCHHHHHHHHHHHhhcCCC-ccceeecccccc
Q 019951 279 AAIIRKLKDVGLH-----GLEVYRS---------DGKLVGVIFTLQDGSLFSLL-PLTVLFGHFQSN 330 (333)
Q Consensus 279 ~~li~~l~~~GlD-----GIEv~~~---------~~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~ 330 (333)
.+.+..|+++|++ |.|+.++ ..+.++...+.+.|++.|+. -.++.||+ |-|
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt 208 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VET 208 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCC
Confidence 5667777788763 3454421 23566667777888888873 33567775 544
No 155
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=39.63 E-value=1.6e+02 Score=31.41 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-CCCHHHHHHHHHhCCCEEEEEEEEee
Q 019951 90 PSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHdt-~~g~~~~~~~a~~~gi~~i~GiEis~ 138 (333)
++..+++|.++|++.+=|-||-+ +.......+++++.|..+...+-++.
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 45578889999999999999865 55666778888888887665555553
No 156
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.23 E-value=1.8e+02 Score=29.90 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCC-CCCCHHHHHHHHHhCCCEEEEE
Q 019951 90 PSKLVERAHCNGVKVLALTDHD-TMSGIPEAIETARRFGMKIIPG 133 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHd-t~~g~~~~~~~a~~~gi~~i~G 133 (333)
.++-+++|.+.|++.+.|.|.- .+....++.+++++.|..+-..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 5678899999999999999974 3445677788888888765333
No 157
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=39.22 E-value=95 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Q 019951 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIET 122 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~ 122 (333)
+.+.+......|++.+-|-|+++..+..++.+.
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~ 39 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRA 39 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHh
Confidence 567788889999999999999999998877653
No 158
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=38.79 E-value=2.1e+02 Score=27.70 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=41.4
Q ss_pred HHHHHHHHHhC---CEEEEeCCCCCCCcHHHHHHHHHcCCC-EEEEe----CC---------CCCHHHHHHHHHHHhhcC
Q 019951 254 EVAVQLIHRTG---GLAVLAHPWALKNPAAIIRKLKDVGLH-GLEVY----RS---------DGKLVGVIFTLQDGSLFS 316 (333)
Q Consensus 254 eevI~~I~~aG---GvaVLAHP~~~~~~~~li~~l~~~GlD-GIEv~----~~---------~~~~~~~~~~~~~a~~~~ 316 (333)
.++.+.|.+.+ .+.+-++|.... ++.+..|.++|+. .|++- ++ .++.+++..+.+.++++|
T Consensus 91 ~~i~~~l~~~~~~~~i~~esrpd~i~--~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~G 168 (313)
T TIGR01210 91 NYIFEKIAQRDNLKEVVVESRPEFID--EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYG 168 (313)
T ss_pred HHHHHHHHhcCCcceEEEEeCCCcCC--HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Confidence 35556666554 356667776443 5677777777876 44442 21 245555667777888888
Q ss_pred CCcc-ceeec
Q 019951 317 LLPL-TVLFG 325 (333)
Q Consensus 317 l~~~-~~~~~ 325 (333)
+... .+.||
T Consensus 169 i~v~~~~i~G 178 (313)
T TIGR01210 169 AGVKAYLLFK 178 (313)
T ss_pred CcEEEEEEec
Confidence 7432 34455
No 159
>PRK08444 hypothetical protein; Provisional
Probab=38.69 E-value=1e+02 Score=30.58 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=48.7
Q ss_pred HHHHHHHHHHh-CCEEEEe-CCC-------CCC-CcHHHHHHHHHcCCC-----EEEEe--------CCCCC-HHHHHHH
Q 019951 253 AEVAVQLIHRT-GGLAVLA-HPW-------ALK-NPAAIIRKLKDVGLH-----GLEVY--------RSDGK-LVGVIFT 308 (333)
Q Consensus 253 ~eevI~~I~~a-GGvaVLA-HP~-------~~~-~~~~li~~l~~~GlD-----GIEv~--------~~~~~-~~~~~~~ 308 (333)
..++|..|++. .++.|-| -|. ... ...+.+..|+++|+| |-|++ .|.+. .++...+
T Consensus 115 y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i 194 (353)
T PRK08444 115 YLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEI 194 (353)
T ss_pred HHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHH
Confidence 45788888875 3454443 011 011 225778999999984 46666 45454 4555788
Q ss_pred HHHHhhcCC-Cccceeeccc
Q 019951 309 LQDGSLFSL-LPLTVLFGHF 327 (333)
Q Consensus 309 ~~~a~~~~l-~~~~~~~~~~ 327 (333)
.+.|.+.|+ .-.+.+|||=
T Consensus 195 ~~~a~~~Gi~~~sg~l~G~g 214 (353)
T PRK08444 195 HKYWHKKGKMSNATMLFGHI 214 (353)
T ss_pred HHHHHHcCCCccceeEEecC
Confidence 889999999 5667889975
No 160
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=38.67 E-value=87 Score=30.07 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=50.2
Q ss_pred HhhcCCCCcccCCCCCCHHHHHHHHHHhC---CEEEEeCCCCCCC-cHHHHHHHHHcCCC-EEEE----eC--------C
Q 019951 236 RYLYDGGPAYSTGSEPLAEVAVQLIHRTG---GLAVLAHPWALKN-PAAIIRKLKDVGLH-GLEV----YR--------S 298 (333)
Q Consensus 236 ~yl~~~~~~yv~~~~~~~eevI~~I~~aG---GvaVLAHP~~~~~-~~~li~~l~~~GlD-GIEv----~~--------~ 298 (333)
-||+.+.|-|.+.. .+.+.++.|.+.. ++.+-++|..... ..+++.++.+.|++ .||+ .+ .
T Consensus 81 iyf~ggt~t~l~~~--~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 81 AYFQAYTNTYAPVE--VLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred EEEECCCcCCCCHH--HHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 36666665554322 2445666666544 3556667765432 12344555566873 3444 33 2
Q ss_pred CCCHHHHHHHHHHHhhcCCCcc-ceeec
Q 019951 299 DGKLVGVIFTLQDGSLFSLLPL-TVLFG 325 (333)
Q Consensus 299 ~~~~~~~~~~~~~a~~~~l~~~-~~~~~ 325 (333)
.|+.+++..+.+.+++.|+... .+.+|
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 3677778888888898888433 44455
No 161
>PRK09234 fbiC FO synthase; Reviewed
Probab=38.12 E-value=90 Score=34.70 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEE-----EEeCC---------CCCHHHHHHHHHHHhhcCC-Cccceeeccc
Q 019951 279 AAIIRKLKDVGLHGL-----EVYRS---------DGKLVGVIFTLQDGSLFSL-LPLTVLFGHF 327 (333)
Q Consensus 279 ~~li~~l~~~GlDGI-----Ev~~~---------~~~~~~~~~~~~~a~~~~l-~~~~~~~~~~ 327 (333)
.+.+.+|+++|+|.+ |++.+ ..+.++...+.+.|.+.|+ .-++.+|||=
T Consensus 628 ~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~ 691 (843)
T PRK09234 628 REWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHV 691 (843)
T ss_pred HHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCC
Confidence 577899999999876 45553 4456677888999999999 5677899974
No 162
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=38.09 E-value=1.3e+02 Score=27.74 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=41.7
Q ss_pred ceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCCEEEEEEEEee
Q 019951 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 72 ~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g--~~~~~~~a~~~gi~~i~GiEis~ 138 (333)
...+|+|+|+ .+|+..++.+.+.|.+.+.| |-.... ..++.+.+++.|+ ..|+.+..
T Consensus 65 ~~~lDvHLm~------~~p~~~i~~~~~~Gad~itv--H~ea~~~~~~~~l~~ik~~G~--~~gval~p 123 (228)
T PTZ00170 65 NTFLDCHLMV------SNPEKWVDDFAKAGASQFTF--HIEATEDDPKAVARKIREAGM--KVGVAIKP 123 (228)
T ss_pred CCCEEEEECC------CCHHHHHHHHHHcCCCEEEE--eccCCchHHHHHHHHHHHCCC--eEEEEECC
Confidence 4778999993 47999999999999998877 544322 4566677777886 44766653
No 163
>PRK15447 putative protease; Provisional
Probab=38.06 E-value=1.8e+02 Score=27.88 Aligned_cols=69 Identities=17% Similarity=0.041 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCC-C-cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccceeecccc
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALK-N-PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLTVLFGHFQ 328 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~-~-~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 328 (333)
..+.++|+.+|++|--++++=|.-.. + ....+..+.+.|.|+|.|.+ +..+ +++++.++ | ..++++
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d----~g~l----~~~~e~~~-~---l~~d~~ 115 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEAND----LGAV----RLLAERGL-P---FVAGPA 115 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeC----HHHH----HHHHhcCC-C---EEEecc
Confidence 34678999999999888898887532 2 23456677888999998744 3333 34444454 3 456777
Q ss_pred ccC
Q 019951 329 SNA 331 (333)
Q Consensus 329 ~~~ 331 (333)
+|.
T Consensus 116 lni 118 (301)
T PRK15447 116 LNC 118 (301)
T ss_pred ccc
Confidence 764
No 164
>PRK10027 cryptic adenine deaminase; Provisional
Probab=37.99 E-value=51 Score=34.99 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=41.6
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhCCCEEEEEEEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGVEI 136 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt--~~---g~~~~~~~a~~~gi~~i~GiEi 136 (333)
-.+|.|+|...| .++|+++...|...|+..+..--|.. +. |+..+.+.++..++.+.+.+-.
T Consensus 85 GlIDaHvHiess--~~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps 151 (588)
T PRK10027 85 GFIDAHLHIESS--MMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSS 151 (588)
T ss_pred CeEeccccCCcc--cCCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecc
Confidence 467999997755 25899999999999999887733322 22 4445555566666655554443
No 165
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.92 E-value=2.5e+02 Score=24.35 Aligned_cols=73 Identities=14% Similarity=-0.025 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHh--CCEEEEeCCCCCCC-cHHHHHHHHHcCCCEEEEeCC-CCCHHHHHHHHHHHhhcCCCcc
Q 019951 248 GSEPLAEVAVQLIHRT--GGLAVLAHPWALKN-PAAIIRKLKDVGLHGLEVYRS-DGKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 248 ~~~~~~eevI~~I~~a--GGvaVLAHP~~~~~-~~~li~~l~~~GlDGIEv~~~-~~~~~~~~~~~~~a~~~~l~~~ 320 (333)
+...+.+|++++.-+. ..+.|...-+.+.. -..+++.|.+.|++-|.++-. .=++++++...+++-.-=|.|-
T Consensus 47 g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pg 123 (143)
T COG2185 47 GLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPG 123 (143)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCC
Confidence 4455678888877333 33333322223222 256788899999998985543 4466666666655443333343
No 166
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=37.85 E-value=67 Score=23.82 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccc
Q 019951 186 MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (333)
Q Consensus 186 ~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~ 228 (333)
+.+.+.+.|++-+..+++...+-.-..+-.+.+++|.++||+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 3445666799999999988877432233446677888888764
No 167
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=37.71 E-value=2.6e+02 Score=26.56 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=37.7
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|.++|++|-+. .. ..++.+.+.+.|.|||-+..|+. +.+.. .++.+++..-++
T Consensus 68 ~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~ 126 (289)
T cd00951 68 GRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDL 126 (289)
T ss_pred CCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 56899999874 32 24567788999999999998854 33443 777778776664
No 168
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=37.29 E-value=1.4e+02 Score=27.91 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCEEEEeCCCCCC--CcHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|.++|+++-+... ...++.+.+.+.|.|||-+..|.. +.++. .++.++|..-++
T Consensus 68 ~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 68 GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 4477777766432 224566777788888888877643 22333 666667766553
No 169
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=37.25 E-value=33 Score=21.74 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCEEEEeC
Q 019951 279 AAIIRKLKDVGLHGLEVYR 297 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~ 297 (333)
.+.++++.++|+|||-.-+
T Consensus 10 ~~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHcCCCEeeCCC
Confidence 5678999999999996544
No 170
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=37.22 E-value=1e+02 Score=30.40 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=27.7
Q ss_pred HHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCCEEEEEEEE
Q 019951 95 ERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEI 136 (333)
Q Consensus 95 ~~A~~~Gl~~laITDHdt~~g--~~~~~~~a~~~gi~~i~GiEi 136 (333)
..+.+.|+..+. ||.+... ...+.+++++.|++++.|...
T Consensus 97 ~e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 97 DELLRNGTTTAL--VFATVHPESVDALFEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHhCCCcEEE--eccccCHHHHHHHHHHHHHCCCeEEEeeee
Confidence 466888998866 7765432 344566777899998887654
No 171
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=37.10 E-value=1.4e+02 Score=28.29 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=36.6
Q ss_pred HHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCcc
Q 019951 258 QLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 258 ~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~ 320 (333)
..++++=-+|||..-+-.+ ..-|.+...+|-|+|=.....-+.+++....+.|+.+|++|+
T Consensus 95 ~~v~~~v~~PvL~KDFIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~L 155 (247)
T PRK13957 95 KSVSSELKIPVLRKDFILD--EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVL 155 (247)
T ss_pred HHHHHhcCCCEEeccccCC--HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceE
Confidence 3344443456665533222 233455556777777666666677777777777777777665
No 172
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=36.80 E-value=1.4e+02 Score=28.14 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=32.4
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|-++|+++-+.... ..++.+.+.+.|.|||-+..|+. +.++. .++.++|...++
T Consensus 66 ~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 66 GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 33777877654321 23455667778888888876643 22333 666667776553
No 173
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=36.59 E-value=1.4e+02 Score=29.75 Aligned_cols=89 Identities=10% Similarity=0.224 Sum_probs=56.8
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHhC------CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------ 298 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------ 298 (333)
||+.|-|-+.+. -.++++++.|++.. .+.+=++|.... .+.++.|.++|++-|.+---
T Consensus 67 y~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR 142 (390)
T PRK06582 67 FFGGGTPSLMNP--VIVEGIINKISNLAIIDNQTEITLETNPTSFE--TEKFKAFKLAGINRVSIGVQSLKEDDLKKLGR 142 (390)
T ss_pred EECCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEEECCcCCHHHHHHcCC
Confidence 555555433321 12456778888753 478889997654 57899999999987666532
Q ss_pred CCCHHHHHHHHHHHhhcCCCcc--ceeecccccc
Q 019951 299 DGKLVGVIFTLQDGSLFSLLPL--TVLFGHFQSN 330 (333)
Q Consensus 299 ~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~ 330 (333)
.|+.++...+.+.+++. +.-. .+.||-=|-|
T Consensus 143 ~h~~~~~~~ai~~~~~~-~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 143 THDCMQAIKTIEAANTI-FPRVSFDLIYARSGQT 175 (390)
T ss_pred CCCHHHHHHHHHHHHHh-CCcEEEEeecCCCCCC
Confidence 36777777778888877 3222 3456654443
No 174
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=36.48 E-value=70 Score=34.29 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEEeC----------------------CCCCHHHHHHHHHHHhhcCCC-ccceeecccccc
Q 019951 279 AAIIRKLKDVGLHGLEVYR----------------------SDGKLVGVIFTLQDGSLFSLL-PLTVLFGHFQSN 330 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~----------------------~~~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~ 330 (333)
.++|+.++++|+..||+.. .+.+++++....+.|-+.|+- -+-+-.|||+..
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 5688999999999999853 357999999999999999983 356788999863
No 175
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=36.43 E-value=1.3e+02 Score=30.10 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=60.6
Q ss_pred hcCCCCcccCCCCCCHHHHHHHHHHhCCEEEEeCCC--CCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhc
Q 019951 238 LYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPW--ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLF 315 (333)
Q Consensus 238 l~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~--~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~ 315 (333)
+++|..+.+|. .+.-..+..|-..|..+|.+--. .+.-+...|++.+.-...+|=..|-+..+.+.....++|+++
T Consensus 71 ig~GDeVI~ps--~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~ 148 (374)
T COG0399 71 IGPGDEVIVPS--FTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRH 148 (374)
T ss_pred CCCCCEEEecC--CchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHc
Confidence 45555554543 45556789999999999998754 333346778877777799999999999999999999999999
Q ss_pred CC
Q 019951 316 SL 317 (333)
Q Consensus 316 ~l 317 (333)
||
T Consensus 149 ~l 150 (374)
T COG0399 149 GL 150 (374)
T ss_pred CC
Confidence 98
No 176
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.34 E-value=66 Score=30.38 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDG 312 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a 312 (333)
.++++.|.++|++-|||.+|...++....+..++
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~ 58 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAASPQSRADCEAIA 58 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHH
Confidence 4567778888888888888877776665555554
No 177
>TIGR03564 F420_MSMEG_4879 F420-dependent oxidoreductase, MSMEG_4879 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_4879 from Mycobacterium smegmatis.
Probab=36.29 E-value=77 Score=29.55 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHh-CCCEEEEEEEEe
Q 019951 92 KLVERAHCNGVKVLALTDHDTMSGIPEAIETARR-FGMKIIPGVEIS 137 (333)
Q Consensus 92 eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~-~gi~~i~GiEis 137 (333)
++++.|.+.|++.+.+.||.....+.-+...+.. ..|++-+|+-+.
T Consensus 3 ~~a~~aE~~Gfd~~w~~eh~~~~~~~~la~~A~~T~ri~lgt~v~~~ 49 (265)
T TIGR03564 3 ADARRAAAAGLDSAWLGQVYGYDALTALALVGRAVPGIELGTAVVPT 49 (265)
T ss_pred HHHHHHHHCCCCEEEecCcCCCCHHHHHHHHHhhCCCceeeeeeccC
Confidence 6789999999999999999887665544444433 567877776654
No 178
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=36.06 E-value=1.8e+02 Score=26.07 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=29.9
Q ss_pred HHHHHHHhCCEEEEeCCCCCCC-cHHHHHHHHHcCCCEEEEeCCCC-----C-HHHHHHHHHHHhhcCC
Q 019951 256 AVQLIHRTGGLAVLAHPWALKN-PAAIIRKLKDVGLHGLEVYRSDG-----K-LVGVIFTLQDGSLFSL 317 (333)
Q Consensus 256 vI~~I~~aGGvaVLAHP~~~~~-~~~li~~l~~~GlDGIEv~~~~~-----~-~~~~~~~~~~a~~~~l 317 (333)
.++...++|.-.|.-|+..-.. ....++...+.|..-+=+..+.+ . ......+..++.+.|+
T Consensus 72 ~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~ 140 (215)
T PRK13813 72 ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGA 140 (215)
T ss_pred HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3455566777677777653211 13345555556654222222211 1 1233555666666664
No 179
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=36.01 E-value=1e+02 Score=30.66 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHhCCEEEEeCCCC-CCCcHHHHHHHHHcCCCEEEEeCCCCC
Q 019951 248 GSEPLAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRSDGK 301 (333)
Q Consensus 248 ~~~~~~eevI~~I~~aGGvaVLAHP~~-~~~~~~li~~l~~~GlDGIEv~~~~~~ 301 (333)
..+|.+.+.|++.++.-|+.+.+=-.. .-...+++++|.++|||-|-+.-.+-+
T Consensus 172 ~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLD 226 (414)
T COG2100 172 LLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALD 226 (414)
T ss_pred ccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCC
Confidence 346788999999999999988774321 123478999999999999988755433
No 180
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=35.88 E-value=1.1e+02 Score=29.74 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=39.5
Q ss_pred eEEceeeeCcCC---C--CCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-------HHHHHHHHhCCCEEEEE
Q 019951 73 VVFELHSHSNFS---D--GYLSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (333)
Q Consensus 73 ~~~DLH~HT~~S---D--G~~sp~eli~~A~~~Gl~~laITDHdt~~g~-------~~~~~~a~~~gi~~i~G 133 (333)
-.+|.|+|.... + ...+|+.....|...|+..+. |.-...++ .+..+.+...|++.+.+
T Consensus 57 G~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 127 (388)
T PRK10657 57 GFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMY 127 (388)
T ss_pred cceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEE
Confidence 578999998631 2 346899999999999998877 65432222 22233445678887744
No 181
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.88 E-value=44 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 019951 84 SDGYLSPSKLVERAHCNGVKVLALTDHDTM 113 (333)
Q Consensus 84 SDG~~sp~eli~~A~~~Gl~~laITDHdt~ 113 (333)
|-.+-..-++++.|+++|.+.++||+...-
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 344556788999999999999999996543
No 182
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=35.79 E-value=1.4e+02 Score=27.73 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQ 310 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~ 310 (333)
+..|+..-++|.-.|.-|+-......++|..+.+.|+..-=+.+|..+.+.+.+++.
T Consensus 74 ~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Confidence 455555555555555555553323345555555556555555555555555544443
No 183
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=35.56 E-value=1.4e+02 Score=27.56 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhCCEEEEeC--CCCCCC-cHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccceeec
Q 019951 251 PLAEVAVQLIHRTGGLAVLAH--PWALKN-PAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLTVLFG 325 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAH--P~~~~~-~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 325 (333)
++. +.++++.++=|++..-. |+.+.. ...+.+.|.+.|++|| |+-.-.+..+..+..+.|.+.||.|..-++|
T Consensus 45 ~~~-~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~v-v~GdI~s~~qr~~~e~vc~~~gl~~~~PLW~ 120 (222)
T TIGR00289 45 PNL-HLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEAL-CIGAIESNYQKSRIDKVCRELGLKSIAPLWH 120 (222)
T ss_pred CCH-HHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEE-EECccccHHHHHHHHHHHHHcCCEEeccccC
Confidence 344 57778888878875433 332221 2456677788899987 5555567778899999999999988777765
No 184
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=35.52 E-value=1.4e+02 Score=30.14 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=43.2
Q ss_pred HHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 019951 255 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 255 evI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~ 318 (333)
++|+.|++.| ...|.+|--..+-+.-.++.+.++|.|.+.|.... .......+.+.++++|..
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~Gik 278 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PISTIEKAIHEAQKTGIY 278 (391)
T ss_pred HHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCCE
Confidence 5677777774 46778875443333233778889999988877644 445567788888888863
No 185
>PRK05588 histidinol-phosphatase; Provisional
Probab=35.20 E-value=45 Score=30.94 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCEEEEeCCCCC---C---C-------c----HHHHHHHHHcCCCEEEEeCCCCC----HHHHHHHHHHH
Q 019951 254 EVAVQLIHRTGGLAVLAHPWAL---K---N-------P----AAIIRKLKDVGLHGLEVYRSDGK----LVGVIFTLQDG 312 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~---~---~-------~----~~li~~l~~~GlDGIEv~~~~~~----~~~~~~~~~~a 312 (333)
+.+++++...+.+-|+|||+.. . . . .++++.+++.|+- ||+..+.-. .....+..+.+
T Consensus 127 ~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~-lEINt~~l~~~~~~~~~~~~l~~~ 205 (255)
T PRK05588 127 ENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKEKV-LEINTRRLDDKRSVENLVKIYKRF 205 (255)
T ss_pred HHHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcCCE-EEEECcccCCCCCCCCHHHHHHHH
Confidence 3456667667779999999832 1 0 0 4567888888975 999875421 11235667778
Q ss_pred hhcCC
Q 019951 313 SLFSL 317 (333)
Q Consensus 313 ~~~~l 317 (333)
.+.|.
T Consensus 206 ~~~g~ 210 (255)
T PRK05588 206 YELGG 210 (255)
T ss_pred HHcCC
Confidence 88875
No 186
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.75 E-value=1.4e+02 Score=28.16 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCEEE-EeCCCCCCCcHHHHHHHHHcC
Q 019951 253 AEVAVQLIHRTGGLAV-LAHPWALKNPAAIIRKLKDVG 289 (333)
Q Consensus 253 ~eevI~~I~~aGGvaV-LAHP~~~~~~~~li~~l~~~G 289 (333)
.++.++.+++.|--++ +.-|.. +.+.+..+.+..
T Consensus 129 ~~~~~~~~~~~gl~~i~lv~P~T---~~eri~~i~~~~ 163 (256)
T TIGR00262 129 SGDLVEAAKKHGVKPIFLVAPNA---DDERLKQIAEKS 163 (256)
T ss_pred HHHHHHHHHHCCCcEEEEECCCC---CHHHHHHHHHhC
Confidence 4567777788875444 444542 334455554443
No 187
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=34.60 E-value=3.2e+02 Score=24.01 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=60.3
Q ss_pred HhCCCCCCHHHHHH-HhCCCCCCCHHHHHHHHHHc-Cccch-HH---HHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhC
Q 019951 191 NKLKLPLKWEHVAK-IAGKGVAPGRLHVARAMVEA-GHVEN-LK---QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG 264 (333)
Q Consensus 191 ~~~g~~i~~e~l~~-~~~~~~~~~~~hia~~Lv~~-g~~~~-~~---~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aG 264 (333)
.+.|++.+.++... +.+ .+...+++.+... |.... +. ..|.+.+...-...-....+.+.+.++.+++.|
T Consensus 28 ~~~g~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g 103 (220)
T TIGR03351 28 TAAGLSPTPEEVQSAWMG----QSKIEAIRALLALDGADEAEAQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSG 103 (220)
T ss_pred HHcCCCCCHHHHHHhhcC----CCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCC
Confidence 45677776666655 332 2334455666543 43221 22 223322221000001234577899999999997
Q ss_pred CEEEEeCCCCCCCcHHHHHHHHHcC------CCEEEEeCCC--CCHHHHHHHHHHHhhcCCC-cc-ceeecc
Q 019951 265 GLAVLAHPWALKNPAAIIRKLKDVG------LHGLEVYRSD--GKLVGVIFTLQDGSLFSLL-PL-TVLFGH 326 (333)
Q Consensus 265 GvaVLAHP~~~~~~~~li~~l~~~G------lDGIEv~~~~--~~~~~~~~~~~~a~~~~l~-~~-~~~~~~ 326 (333)
-...++-=.. ...+-..+...| ++.|-+.... .+|. -..+...++++++. |. .+.+||
T Consensus 104 ~~~~ivT~~~---~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~-p~~~~~a~~~~~~~~~~~~~~igD 171 (220)
T TIGR03351 104 IKVALTTGFD---RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPA-PDLILRAMELTGVQDVQSVAVAGD 171 (220)
T ss_pred CEEEEEeCCc---hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCC-HHHHHHHHHHcCCCChhHeEEeCC
Confidence 6544443111 112222233344 4444343322 2221 13344566778886 44 477776
No 188
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=34.52 E-value=82 Score=32.03 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCEEEEeCC
Q 019951 253 AEVAVQLIHRTGGLAVLAHP 272 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP 272 (333)
..+||++.|+.| |+||---
T Consensus 129 SaDVIDaaHrNG-VPvlGt~ 147 (553)
T COG4724 129 SADVIDAAHRNG-VPVLGTL 147 (553)
T ss_pred chhhhhhhhcCC-Cceeeee
Confidence 358999999864 8887663
No 189
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=34.49 E-value=2.1e+02 Score=25.18 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=26.0
Q ss_pred cCCCEEEEeCCCC----CHHHHHHHHHHHhhcCCCccceeec
Q 019951 288 VGLHGLEVYRSDG----KLVGVIFTLQDGSLFSLLPLTVLFG 325 (333)
Q Consensus 288 ~GlDGIEv~~~~~----~~~~~~~~~~~a~~~~l~~~~~~~~ 325 (333)
.|..||..+.+.+ +.+.+..+.+.|+++++ |..+-.+
T Consensus 114 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~i~~H~~ 154 (275)
T cd01292 114 LGAVGLKLAGPYTATGLSDESLRRVLEEARKLGL-PVVIHAG 154 (275)
T ss_pred cCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCC-eEEEeeC
Confidence 4788888776655 56777888888888886 5554443
No 190
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.45 E-value=1.5e+02 Score=27.93 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=34.1
Q ss_pred CCEEEEeCCCCCC--CcHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|.++|++|-+... ...++.+.+.++|.|+|-+..|.. +.++. .++.++|...++
T Consensus 69 ~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 69 GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 4478888766432 224566777788888888877653 22333 667777776653
No 191
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=34.45 E-value=2.3e+02 Score=25.85 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCC--------------CHHHHHHHHHHHhhcC
Q 019951 252 LAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--------------KLVGVIFTLQDGSLFS 316 (333)
Q Consensus 252 ~~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~--------------~~~~~~~~~~~a~~~~ 316 (333)
...++++.+.+.+ +..+.+.- ++....++.+.+.|++.|-++-+.. ..+....+.+++++.|
T Consensus 52 ~~~~~i~~l~~~~~~~~~~~l~---~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G 128 (265)
T cd03174 52 DDWEVLRAIRKLVPNVKLQALV---RNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG 128 (265)
T ss_pred CHHHHHHHHHhccCCcEEEEEc---cCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 4455556665555 33332211 1113445555666666666555433 2333345555566666
Q ss_pred C
Q 019951 317 L 317 (333)
Q Consensus 317 l 317 (333)
+
T Consensus 129 ~ 129 (265)
T cd03174 129 L 129 (265)
T ss_pred C
Confidence 5
No 192
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.14 E-value=3.2e+02 Score=26.83 Aligned_cols=64 Identities=11% Similarity=-0.029 Sum_probs=42.8
Q ss_pred HHHHHHHHHHh-CC--EEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 019951 253 AEVAVQLIHRT-GG--LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 253 ~eevI~~I~~a-GG--vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~ 318 (333)
..+.++.+.+. .+ +.++..|++.. ...++.+.+.|+|.|-+.......+......++|++.|+.
T Consensus 64 ~~e~i~~~~~~~~~~~~~~ll~pg~~~--~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~ 130 (337)
T PRK08195 64 DEEYIEAAAEVVKQAKIAALLLPGIGT--VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMD 130 (337)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCccc--HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCe
Confidence 45666666444 22 34455676533 3457778888888888887666666678888888888873
No 193
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.93 E-value=2.9e+02 Score=27.07 Aligned_cols=50 Identities=14% Similarity=-0.027 Sum_probs=36.1
Q ss_pred EEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 019951 267 AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 267 aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~ 318 (333)
+++..|++.. .+.++.+.+.|+|.|-+....+..+......++|++.|+.
T Consensus 80 ~~ll~pg~~~--~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~ 129 (333)
T TIGR03217 80 AVLLLPGIGT--VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMD 129 (333)
T ss_pred EEEeccCccC--HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCe
Confidence 5566676533 3457778888888888887666666677888888888874
No 194
>PRK07329 hypothetical protein; Provisional
Probab=33.75 E-value=1e+02 Score=28.48 Aligned_cols=63 Identities=22% Similarity=0.129 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCEEEEeCCCC---CCC----c--------HHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHhh
Q 019951 254 EVAVQLIHRTGGLAVLAHPWA---LKN----P--------AAIIRKLKDVGLHGLEVYRSD----GKLVGVIFTLQDGSL 314 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~---~~~----~--------~~li~~l~~~GlDGIEv~~~~----~~~~~~~~~~~~a~~ 314 (333)
+.+++++...|=+-|+|||.. +.. . .++++.+++.|+- ||+..+. .........++.|++
T Consensus 128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-lEiNt~~~~~~~~~~~~~~~l~~~~~ 206 (246)
T PRK07329 128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDNDLA-FELNTKSMYLYGNEGLYRYAIELYKQ 206 (246)
T ss_pred HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcCCe-EEEECcccccCCCCcchHHHHHHHHH
Confidence 455566665557799999983 110 1 3566788888976 9999752 222233556899999
Q ss_pred cCC
Q 019951 315 FSL 317 (333)
Q Consensus 315 ~~l 317 (333)
+|.
T Consensus 207 ~g~ 209 (246)
T PRK07329 207 LGG 209 (246)
T ss_pred cCC
Confidence 986
No 195
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=33.65 E-value=84 Score=28.16 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
.+.|+.+|++ |+.|.+. ..+ ..+.+..+.++|+|||..-+|
T Consensus 189 ~~~v~~~~~~-g~~v~~w--Tvn-~~~~~~~~~~~gVdgiiTD~p 229 (229)
T cd08562 189 EEQVKALKDA-GYKLLVY--TVN-DPARAAELLEWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHHC-CCEEEEE--eCC-CHHHHHHHHHCCCCEEEcCCC
Confidence 5789999998 4666654 333 356788899999999976554
No 196
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.51 E-value=92 Score=25.53 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEec
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTD 109 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITD 109 (333)
-...+++++++.|.+.+-+.++|+=
T Consensus 34 G~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 34 GLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 3458999999999999999999964
No 197
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.50 E-value=1.5e+02 Score=25.18 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhC
Q 019951 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF 126 (333)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~laITDHdt~~--g~~~~~~~a~~~ 126 (333)
..+++++++.|.+.+.+.++|+=..+.. ...++.+..++.
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4789999999999999999998766532 233444444443
No 198
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.25 E-value=87 Score=28.40 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCC
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 299 (333)
-.+.|+.+|+.| +.|.++- . +..+.+..+.++|+|||..-+|.
T Consensus 190 ~~~~v~~~~~~G-~~v~~wT--v-n~~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 190 NPAFIKALRDAG-LKLNVWT--V-DDAEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred CHHHHHHHHHCC-CEEEEEe--C-CCHHHHHHHHHCCCCEEEcCCCC
Confidence 357889999984 6666542 2 33567888999999999887764
No 199
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=33.15 E-value=71 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhc
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLF 315 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~ 315 (333)
.++++.|.++|++-||+.+|..++.+...+..+.+..
T Consensus 17 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~ 53 (237)
T PF00682_consen 17 LEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL 53 (237)
T ss_dssp HHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh
Confidence 4677888999999999998888777776666555443
No 200
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.13 E-value=1e+02 Score=28.67 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCEEEEeC-CCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 253 AEVAVQLIHRTGGLAVLAH-PWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAH-P~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
.++.|+.+|++| +.|.+. +....+..+.+..+.++|+|||..-+|
T Consensus 212 ~~~~v~~~~~~G-l~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 212 TEEFVKKAHENG-LKVMTYFDEPVNDNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred hHHHHHHHHHcC-CEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCCH
Confidence 467899999995 555443 222124467888999999999977665
No 201
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.89 E-value=1.5e+02 Score=28.56 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhc
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLF 315 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~ 315 (333)
|.++|++|-+.... ..++.+.+.++|.|||=+..|+. +.++. .++..+|..-
T Consensus 76 grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 76 GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 44888888775432 24566777888999998887742 22333 6667777765
No 202
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=32.86 E-value=1.9e+02 Score=26.96 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCC-CCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQ 310 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~-~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~ 310 (333)
+++-|+...++|.-.|.-|+-.. .....+++.+.++|+..-=+.+|..+.+.+..++.
T Consensus 71 P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~ 129 (229)
T PRK09722 71 PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIH 129 (229)
T ss_pred HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Confidence 45666666777766777776543 23345666667777665556666666665554444
No 203
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.86 E-value=83 Score=29.50 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
.++++.|.++|++-|||.++..++.+...+..+++
T Consensus 23 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~ 57 (268)
T cd07940 23 LEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAR 57 (268)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 46788889999999999988876666655555544
No 204
>PLN02428 lipoic acid synthase
Probab=32.26 E-value=5.2e+02 Score=25.71 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=42.0
Q ss_pred HHHHHHHHHHh-CCEEEEeCCC-CCCCc----HHHHHHHHHcCCCEEEEe-C-----------CCCCHHHHHHHHHHHhh
Q 019951 253 AEVAVQLIHRT-GGLAVLAHPW-ALKNP----AAIIRKLKDVGLHGLEVY-R-----------SDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 253 ~eevI~~I~~a-GGvaVLAHP~-~~~~~----~~li~~l~~~GlDGIEv~-~-----------~~~~~~~~~~~~~~a~~ 314 (333)
.-++++.+++. .|+.+-++-. -+.+. .+++..|.+.|+|-+-+- | .+-+++++.++.++|.+
T Consensus 233 ~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 233 SLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred HHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHH
Confidence 34566666766 3455444321 11222 456788889998877662 2 24578888999999999
Q ss_pred cCC
Q 019951 315 FSL 317 (333)
Q Consensus 315 ~~l 317 (333)
.||
T Consensus 313 ~gf 315 (349)
T PLN02428 313 MGF 315 (349)
T ss_pred cCC
Confidence 998
No 205
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=32.23 E-value=91 Score=27.07 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCE-E-EEeCCCCCCC-cHHHHHHHHHcCCCEEEEeCC-CCCHHHH
Q 019951 254 EVAVQLIHRTGGL-A-VLAHPWALKN-PAAIIRKLKDVGLHGLEVYRS-DGKLVGV 305 (333)
Q Consensus 254 eevI~~I~~aGGv-a-VLAHP~~~~~-~~~li~~l~~~GlDGIEv~~~-~~~~~~~ 305 (333)
.+.|++||+++|- . |+--|+.|.. +..+-+.++...+--|||.=| -|.-+++
T Consensus 54 g~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~F 109 (146)
T COG0757 54 GELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEF 109 (146)
T ss_pred HHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccc
Confidence 4799999999884 2 5666998864 466778888899999999855 3444433
No 206
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.19 E-value=1.6e+02 Score=27.89 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=32.4
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|.++|+|+-+.... ..++.+.+.++|.|||-+..|+. +.++. .+..++|..-++
T Consensus 72 ~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 72 GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 34678887765332 23455677788888888877753 22333 566666666553
No 207
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=16 Score=38.50 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
++-++.+.+- .+.|+..+.+|=-+.
T Consensus 229 r~gLSMkll~---sq~~isfF~~~hs~s 253 (665)
T KOG2422|consen 229 RSGLSMKLLE---SQKGISFFKFEHSNS 253 (665)
T ss_pred cCCcceeeec---ccCceeEEEeecchH
Confidence 4445544433 677788888875443
No 208
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.04 E-value=1.7e+02 Score=27.31 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=34.2
Q ss_pred CEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 265 GLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 265 GvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
.++|+++-+.... ..++.+.+.+.|.|||-+..|.. +.++. .++.+.|..-++
T Consensus 66 ~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~ 124 (281)
T cd00408 66 RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDL 124 (281)
T ss_pred CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 4788888765332 24456677888888888887754 33333 666777776553
No 209
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.03 E-value=1.7e+02 Score=25.69 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHH
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLV 303 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~ 303 (333)
.++.++.+.++|.-.|.-|..........++.+.+.|++-+=...+..+.+
T Consensus 68 ~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e 118 (210)
T TIGR01163 68 PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLE 118 (210)
T ss_pred HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHH
Confidence 456677777777655555765433334556666677766333334433333
No 210
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.84 E-value=90 Score=34.04 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHhC-CEEE--EeCCCC
Q 019951 252 LAEVAVQLIHRTG-GLAV--LAHPWA 274 (333)
Q Consensus 252 ~~eevI~~I~~aG-GvaV--LAHP~~ 274 (333)
...+++++||+.| +.++ |.|+++
T Consensus 476 ~~~~~~~~vh~~gg~~i~~QL~h~Gr 501 (765)
T PRK08255 476 AWKRIVDFVHANSDAKIGIQLGHSGR 501 (765)
T ss_pred HHHHHHHHHHhcCCceEEEEccCCcc
Confidence 4667899999995 6644 788765
No 211
>PRK12677 xylose isomerase; Provisional
Probab=31.81 E-value=92 Score=31.17 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCEEEEeCC----CCCH-----HHHHHHHHHHhhcCCC
Q 019951 279 AAIIRKLKDVGLHGLEVYRS----DGKL-----VGVIFTLQDGSLFSLL 318 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~----~~~~-----~~~~~~~~~a~~~~l~ 318 (333)
.+.+..+.++|++|||++.+ .... .....+.+..+++||.
T Consensus 34 ~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 34 VEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred HHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCe
Confidence 45556666666666666522 1111 1234555566666664
No 212
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.67 E-value=72 Score=30.22 Aligned_cols=38 Identities=5% Similarity=0.103 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 280 AIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 280 ~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
..++...+.|+|.|-++.+.++.+......++|++.|+
T Consensus 95 ~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK 132 (275)
T ss_pred HHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC
Confidence 34555555566666666555555555555666666554
No 213
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=31.67 E-value=44 Score=32.07 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.0
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVL 105 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~l 105 (333)
.+++||+|- ||+++++.+.+.+.+.|++..
T Consensus 2 pK~eLH~Hl---~Gsi~~~~l~~l~~~~~~~~~ 31 (324)
T TIGR01430 2 PKAELHLHL---EGSIRPETLLELAQKNGIPLP 31 (324)
T ss_pred CceeeEecc---cCCCCHHHHHHHHHHcCCCCC
Confidence 478999995 788999999999999998753
No 214
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=15 Score=38.72 Aligned_cols=8 Identities=38% Similarity=0.401 Sum_probs=3.8
Q ss_pred CCHH-HHHH
Q 019951 29 MTAE-QSLA 36 (333)
Q Consensus 29 ~~~~-~~~~ 36 (333)
+|.+ |.+|
T Consensus 112 ~s~deq~~a 120 (665)
T KOG2422|consen 112 GSDDEQKLA 120 (665)
T ss_pred CCchHHHHH
Confidence 4444 4444
No 215
>PRK09228 guanine deaminase; Provisional
Probab=31.54 E-value=1.3e+02 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCCEEEEEEEEe
Q 019951 97 AHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 97 A~~~Gl~~laITDHdt~~--g~~~~~~~a~~~gi~~i~GiEis 137 (333)
+.+.|+..+. ||.+.. ..+.+.+++++.|++.+.|.++.
T Consensus 124 ~l~~G~Ttv~--d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 124 LLRNGTTTAL--VFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHhCCceEEE--eccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 4677887665 776553 34455666778899998887764
No 216
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=31.50 E-value=76 Score=30.89 Aligned_cols=53 Identities=9% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
.+.|+.+|+.| +.|.+ |..+ ....+..+.++|+|||-.-+|. .+.++.+.+++
T Consensus 235 ~~~v~~~~~~G-~~v~v--WTVN-d~~~~~~l~~~GVDgIiTD~P~-------~l~~~~~~~~~ 287 (315)
T cd08609 235 ALEIKELRKDN-VSVNL--WVVN-EPWLFSLLWCSGVSSVTTNACQ-------LLKDMSKPIWL 287 (315)
T ss_pred HHHHHHHHHCC-CEEEE--ECCC-CHHHHHHHHhcCCCEEEcCCHH-------HHHHhhhhhhh
Confidence 56899999984 65654 4433 3577899999999999877653 44555555555
No 217
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=31.41 E-value=48 Score=31.94 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH--HHHhhcCCCcc-ceeecc
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTL--QDGSLFSLLPL-TVLFGH 326 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~--~~a~~~~l~~~-~~~~~~ 326 (333)
|...++++.|++ + .+.-|.+. +...+++.+.+.|+|++.+-+. .+..+..... +.+-..|+.|. .+++|.
T Consensus 211 p~~k~i~~~i~~--~-~~ilh~cG--~~~~~l~~~~~~g~d~~~~d~~-~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt 283 (326)
T cd03307 211 PYHKKIVKELHG--C-PTILHICG--NTTPILEYIAQCGFDGISVDEK-VDVKTAKEIVGGRAALIGNVSPSQTLLNGT 283 (326)
T ss_pred HHHHHHHHHHhc--C-CcEEEECC--CChhHHHHHHHcCCCeeccccc-CCHHHHHHHcCCceEEEeCCChHHHhcCCC
Confidence 456788899988 3 34447443 2346789999999998765443 3454443332 25667777775 566654
No 218
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.26 E-value=1.3e+02 Score=28.27 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=36.2
Q ss_pred Cccc--CCCCCCHHHHHHHHHHhCCEEEEeCCCCC------------CCcHHHHHHHHHcCCCEEEEeC
Q 019951 243 PAYS--TGSEPLAEVAVQLIHRTGGLAVLAHPWAL------------KNPAAIIRKLKDVGLHGLEVYR 297 (333)
Q Consensus 243 ~~yv--~~~~~~~eevI~~I~~aGGvaVLAHP~~~------------~~~~~li~~l~~~GlDGIEv~~ 297 (333)
+.|| ...+|.++.+|+-+++.|=--|--=|..+ +..+++-..|.+.|+. +|+|-
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~-v~~~l 236 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFK-VEVYL 236 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCce-eEEEe
Confidence 4454 24579999999999999864332223311 1225677888999998 68884
No 219
>PRK08005 epimerase; Validated
Probab=31.26 E-value=1.9e+02 Score=26.57 Aligned_cols=71 Identities=8% Similarity=-0.055 Sum_probs=0.0
Q ss_pred ccCCCCCCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCc
Q 019951 245 YSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLP 319 (333)
Q Consensus 245 yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~ 319 (333)
|||.-.... +.|+.|++.--+++=+|-.- .+++..++.++++|.|-|.+.+-.. ....+..+..++.|..+
T Consensus 39 FVPN~tfG~-~~i~~l~~~t~~~~DvHLMv-~~P~~~i~~~~~~gad~It~H~Ea~--~~~~~~l~~Ik~~G~k~ 109 (210)
T PRK08005 39 FINNITFGM-KTIQAVAQQTRHPLSFHLMV-SSPQRWLPWLAAIRPGWIFIHAESV--QNPSEILADIRAIGAKA 109 (210)
T ss_pred cCCccccCH-HHHHHHHhcCCCCeEEEecc-CCHHHHHHHHHHhCCCEEEEcccCc--cCHHHHHHHHHHcCCcE
No 220
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=31.07 E-value=1.4e+02 Score=27.57 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGV 305 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~ 305 (333)
.++.....+.+-++|+.+..- ..-..+...+.+-|++.||+-+..-...+.
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~e~ 54 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAALEA 54 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHHHH
Confidence 456777888888899987531 122457788999999999998765544443
No 221
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=30.93 E-value=1.1e+02 Score=32.34 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
.++++.|.++|+|-||+-.|..++.+...+.+.+.+
T Consensus 51 i~ia~~L~~~Gvd~IE~Gfp~~s~~D~e~v~~i~~~ 86 (564)
T TIGR00970 51 RRYFDLLVRIGFKEIEVGFPSASQTDFDFVREIIEQ 86 (564)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 457888999999999998888878888888887765
No 222
>PRK14847 hypothetical protein; Provisional
Probab=30.85 E-value=92 Score=30.75 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
.++...|.++|+|-||+-+|..+..+.+.+.++++.
T Consensus 57 l~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~ 92 (333)
T PRK14847 57 LRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDE 92 (333)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHh
Confidence 356678889999999999999988888888887765
No 223
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.83 E-value=1.9e+02 Score=25.50 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=33.3
Q ss_pred HHHHHHHhCCEEEEeCCCCCC-CcHHHHHHHHHcCCC-EEEEeCCCCCHHHHHHHH
Q 019951 256 AVQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLH-GLEVYRSDGKLVGVIFTL 309 (333)
Q Consensus 256 vI~~I~~aGGvaVLAHP~~~~-~~~~li~~l~~~GlD-GIEv~~~~~~~~~~~~~~ 309 (333)
.++...++|.-.|.-|..... ...++++...+.|+. ++++..+....++...+.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~ 123 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELK 123 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHH
Confidence 377888889888888865422 125677888888864 334445544444544443
No 224
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=30.73 E-value=55 Score=35.14 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEE
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 293 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI 293 (333)
+.+.|+++|++|--|..-==...-..++..+.+.+.|||||
T Consensus 289 akelVDivH~~GKeAmMFlGD~WIGtEPyg~~F~~iGlDaV 329 (716)
T PF09508_consen 289 AKELVDIVHEYGKEAMMFLGDHWIGTEPYGKYFKSIGLDAV 329 (716)
T ss_dssp HHHHHHHHHHTT-EEEEESSSSBTTT-TTSTTGGGG---EE
T ss_pred HHHHHHHHHhcCCeEEEecCCceeecccchhhhhhcCcceE
Confidence 78999999999987664311111112445556677777776
No 225
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=30.36 E-value=4e+02 Score=23.83 Aligned_cols=130 Identities=19% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHhCCCC-CCHHHHHHHhCCCCCCCHHHHHHHHHHcCcc------chHHHHHHHhhcCCCCcccCCCCCCHHHHHHHH
Q 019951 188 LKLNKLKLP-LKWEHVAKIAGKGVAPGRLHVARAMVEAGHV------ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLI 260 (333)
Q Consensus 188 ~~L~~~g~~-i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~------~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I 260 (333)
..+++.|++ .+.+++....+.+ .+..+.+.+-..... +.+.+.|.....+.. ....+|.+.++++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~ig~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L 101 (220)
T COG0546 28 AALAELGLPPLDEEEIRQLIGLG---LDELIERLLGEADEEAAAELVERLREEFLTAYAELL---ESRLFPGVKELLAAL 101 (220)
T ss_pred HHHHHcCCCCCCHHHHHHHhcCC---HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhhc---cCccCCCHHHHHHHH
Confidence 345667877 7888887765532 222222222211111 112222322222211 123468899999999
Q ss_pred HHhCCE-EEEeCCCCCCCcHHHHHHHHHcCC----CEEEEeCC-CCCHHHHHHHHHHHhhcCCCc-cceeeccc
Q 019951 261 HRTGGL-AVLAHPWALKNPAAIIRKLKDVGL----HGLEVYRS-DGKLVGVIFTLQDGSLFSLLP-LTVLFGHF 327 (333)
Q Consensus 261 ~~aGGv-aVLAHP~~~~~~~~li~~l~~~Gl----DGIEv~~~-~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~ 327 (333)
+++|.. +|+-+ +....+-..+...|+ +.|..... ..+.-.-..+...++++++.| ..+..||-
T Consensus 102 ~~~g~~l~i~T~----k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~VGDs 171 (220)
T COG0546 102 KSAGYKLGIVTN----KPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDS 171 (220)
T ss_pred HhCCCeEEEEeC----CcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEECCC
Confidence 999944 44443 111222223333563 44544111 112223366677788888876 45566663
No 226
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.35 E-value=2.7e+02 Score=26.35 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=29.4
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhc
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLF 315 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~ 315 (333)
|.++|+|+-+.... ..++.+.+.++|.|||=+..|.. +.++. .++.++|..-
T Consensus 69 ~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 69 GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 33677776654321 23455566777777777766643 22222 6666666655
No 227
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=30.32 E-value=83 Score=30.85 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEec-CCC--------------CC------CHHHHHHHHHhCCCEEEEEEEEee
Q 019951 83 FSDGYLSPSKLVERAHCNGVKVLALTD-HDT--------------MS------GIPEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 83 ~SDG~~sp~eli~~A~~~Gl~~laITD-Hdt--------------~~------g~~~~~~~a~~~gi~~i~GiEis~ 138 (333)
|.-..+.|++.++.|++.|.+.+.+|= |+. +. =+.++.++|++.||++ |+=.|.
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~--G~Y~S~ 160 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKF--GLYYSP 160 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EE--EEEEES
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeE--EEEecc
Confidence 345679999999999999999999863 322 11 1457888999999875 665554
No 228
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=30.20 E-value=64 Score=22.27 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccc
Q 019951 181 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (333)
Q Consensus 181 ~r~~~~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~ 228 (333)
+|+.++++.+.+.+-+++..++.+..+-+. .+-..+.+.|.+.||+.
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~gl~~-stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARALGLPK-STVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHHTS-H-HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCcCH-HHHHHHHHHHHHCcCee
Confidence 466778888888888888889988876431 23345667777777753
No 229
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=30.19 E-value=68 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=37.2
Q ss_pred EEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC---------HHHHHHHHHhCCCE
Q 019951 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG---------IPEAIETARRFGMK 129 (333)
Q Consensus 74 ~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g---------~~~~~~~a~~~gi~ 129 (333)
.+-+-+|...+.| +...+++|.+.|.+++.|==++.-.. ..++.+.++..++.
T Consensus 130 ~~~iGaHvSiaGG---~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~ 191 (413)
T PTZ00372 130 NVYIGAHVSASGG---VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYD 191 (413)
T ss_pred CceEEEEEecccc---HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3455666666655 56689999999999999987776432 23466677777764
No 230
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=30.07 E-value=1.3e+02 Score=20.70 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=17.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q 019951 23 GGGKKKMTAEQSLAFNSVTEW 43 (333)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (333)
++++.+.|.+|...|..+++-
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~ 21 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQE 21 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999963
No 231
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=30.04 E-value=99 Score=27.95 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
++.|+.+|++ |+.|..+ .. +..+.+..+.+.|+|||..-+|
T Consensus 190 ~~~i~~~~~~-g~~v~~W--tv-n~~~~~~~~~~~GVdgi~TD~P 230 (230)
T cd08563 190 EEVVEELKKR-GIPVRLW--TV-NEEEDMKRLKDLGVDGIITNYP 230 (230)
T ss_pred HHHHHHHHHC-CCEEEEE--ec-CCHHHHHHHHHCCCCEEeCCCC
Confidence 5788889888 5666643 22 3457788899999999976554
No 232
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=30.00 E-value=2.3e+02 Score=26.71 Aligned_cols=49 Identities=6% Similarity=-0.092 Sum_probs=32.4
Q ss_pred EEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 267 AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 267 aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
.+++.|.+. ....+..+.+.|++.|-++.+.+..+....+.++|++.|+
T Consensus 75 ~~~~~~~~~--~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~ 123 (266)
T cd07944 75 AVMVDYGND--DIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY 123 (266)
T ss_pred EEEECCCCC--CHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC
Confidence 445555442 2345666677777777777777777777777777777776
No 233
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.92 E-value=61 Score=26.02 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.7
Q ss_pred eeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 79 ~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
+--.+|-.+-..-+.++.|+++|.+.++||+...
T Consensus 51 I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 51 IAISQSGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred EEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3334454455678899999999999999999643
No 234
>PRK09875 putative hydrolase; Provisional
Probab=29.81 E-value=3.2e+02 Score=26.29 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCCCCCCCccccccccccccCCceEEceeeeCcCCCCCCCHHHHHHHHHHcCC--c
Q 019951 26 KKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGV--K 103 (333)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl--~ 103 (333)
+.++|+.+...|+.+.+-....-|| +++||.. |...++ +++.+.+.|+ +
T Consensus 130 ~~~it~~E~kvl~Aaa~a~~~TG~p--------------------------i~~Ht~~--~~~g~e-~l~il~e~Gvd~~ 180 (292)
T PRK09875 130 EGKITPLEEKVFIAAALAHNQTGRP--------------------------ISTHTSF--STMGLE-QLALLQAHGVDLS 180 (292)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCc--------------------------EEEcCCC--ccchHH-HHHHHHHcCcCcc
Confidence 3456777766666666555444455 6777766 444444 5889999999 7
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCE
Q 019951 104 VLALTDHDTMSGIPEAIETARRFGMK 129 (333)
Q Consensus 104 ~laITDHdt~~g~~~~~~~a~~~gi~ 129 (333)
.+.|+=-|.........+.+ +.|..
T Consensus 181 rvvi~H~d~~~d~~~~~~l~-~~G~~ 205 (292)
T PRK09875 181 RVTVGHCDLKDNLDNILKMI-DLGAY 205 (292)
T ss_pred eEEEeCCCCCCCHHHHHHHH-HcCCE
Confidence 77776555444444444443 35653
No 235
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=29.74 E-value=1.2e+02 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCC------HHHHHHHHH-hCCCEEEEEEEEee
Q 019951 91 SKLVERAHCNGVKVLALTDHDTMSG------IPEAIETAR-RFGMKIIPGVEIST 138 (333)
Q Consensus 91 ~eli~~A~~~Gl~~laITDHdt~~g------~~~~~~~a~-~~gi~~i~GiEis~ 138 (333)
-++++.|.+.|++.+.+.||+.... +.-+...+. -..|++.+|+-.-.
T Consensus 26 ~~~a~~ae~~Gfd~~w~~eh~~~~~~~~~~p~~~~a~~a~~T~~i~lg~~v~~~~ 80 (307)
T PF00296_consen 26 VELAQLAEELGFDSVWVSEHHFTDYGSSPDPFVLLAALAARTKRIRLGTAVTPLP 80 (307)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSSSTTTSTS-HHHHHHHHHHT-SSSEEEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEecccCCCccccchhHHHHHHHHhhccCccceeeeeeccc
Confidence 3566677799999999999998642 222222233 35688877776654
No 236
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=29.49 E-value=68 Score=30.49 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCcc
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~ 320 (333)
-+-+..++++=.+|||.+-+-.+ ..-|.+...+|.|.|=..-..-+.+++....++|+++|++|+
T Consensus 96 ~e~L~~v~~~v~~PvL~KDFiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~L 160 (254)
T COG0134 96 FEDLRAVRAAVDLPVLRKDFIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVL 160 (254)
T ss_pred HHHHHHHHHhcCCCeeeccCCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeE
Confidence 45678888888888888755433 334666777788877766666677777788888888887765
No 237
>PTZ00246 proteasome subunit alpha; Provisional
Probab=29.47 E-value=42 Score=31.23 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.1
Q ss_pred EEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 74 ~~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
..|+++ |+|| ||.+-=-|++.+|..+|-..|||.--|.
T Consensus 4 ~yd~~~-~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dg 42 (253)
T PTZ00246 4 RYDSRT-TTFSPEGRLYQVEYALEAINNASLTVGILCKEG 42 (253)
T ss_pred ccCCCC-ceECCCCEEhHHHHHHHHHHhCCCEEEEEECCE
Confidence 357777 5577 9999999999999999999999976553
No 238
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.07 E-value=2.4e+02 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
....++.++++++.+.|++.+.+||++.
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~ 177 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDR 177 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcC
Confidence 4467899999999999999999999874
No 239
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=28.99 E-value=4.5e+02 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|.++|+|+-+. .. ..++.+.+.++|.|+|-+..|+. +.++. .+...+|...++
T Consensus 75 ~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~l 133 (303)
T PRK03620 75 GRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDL 133 (303)
T ss_pred CCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 45889998763 21 24466777899999999988864 33433 667777777664
No 240
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=28.98 E-value=1.8e+02 Score=26.57 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHHHhCCCEEEE
Q 019951 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKIIP 132 (333)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~laITDHdt~~g----~~~~~~~a~~~gi~~i~ 132 (333)
+..+++++++.+++.|++.+.|..+....- ..++.+..+..|+.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEe
Confidence 789999999999999999999997444432 46666777778776543
No 241
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=28.95 E-value=2.6e+02 Score=26.68 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=34.4
Q ss_pred hCCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhc
Q 019951 263 TGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLF 315 (333)
Q Consensus 263 aGGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~ 315 (333)
.|.++|++|-+.... ..++.+.+.+.|.||+=+..|+. +.++. .++..+|..-
T Consensus 67 ~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 67 AGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred CCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 355888888765332 24466777888999988887743 22333 6666677665
No 242
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.93 E-value=1.2e+02 Score=27.73 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 299 (333)
.+.|+.+|++| +.|.++- .. ..+.+..+.++|+|||..-+|.
T Consensus 221 ~~~i~~~~~~G-~~v~vwt--vn-~~~~~~~~~~~Gvdgi~TD~P~ 262 (263)
T cd08567 221 KELVDEAHALG-LKVVPWT--VN-DPEDMARLIDLGVDGIITDYPD 262 (263)
T ss_pred HHHHHHHHHCC-CEEEEec--CC-CHHHHHHHHHcCCCEEEcCCCC
Confidence 57889999987 5565542 22 3467788999999999877663
No 243
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=28.67 E-value=1.4e+02 Score=27.94 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHh--CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 251 PLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 251 ~~~eevI~~I~~a--GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
.+.+++.++|+.+ +|+..+.-+- .+....+..+.+.|.+|| ++.--++.++.+.+.+.++-
T Consensus 46 ~~~~~~~~~~~a~~~~g~~~~VRvp--~~~~~~i~r~LD~Ga~gI-ivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 46 NDVLTFIPQLMALKGSASAPVVRPP--WNEPVIIKRLLDIGFYNF-LIPFVESAEEAERAVAATRY 108 (249)
T ss_pred CCHHHHHHHHHHHhhcCCCcEEECC--CCCHHHHHHHhcCCCCEE-EecCcCCHHHHHHHHHHcCC
Confidence 3444444444333 4444443321 123567888999999999 66667888998888876654
No 244
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.65 E-value=2.3e+02 Score=26.87 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCEEE-EeCCCCCCCcHHHHHHHHHc
Q 019951 254 EVAVQLIHRTGGLAV-LAHPWALKNPAAIIRKLKDV 288 (333)
Q Consensus 254 eevI~~I~~aGGvaV-LAHP~~~~~~~~li~~l~~~ 288 (333)
++.++.+++.|=-+| +.-|. .+.+.+..+.+.
T Consensus 134 ~~~~~~~~~~gi~~I~lv~Pt---T~~eri~~i~~~ 166 (263)
T CHL00200 134 DYLISVCNLYNIELILLIAPT---SSKSRIQKIARA 166 (263)
T ss_pred HHHHHHHHHcCCCEEEEECCC---CCHHHHHHHHHh
Confidence 345666666664333 44343 234555555443
No 245
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=28.64 E-value=1.1e+02 Score=27.44 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
.+.|+.+|++ |+.|.++- .+ ....+..+.++|+|||..-+|
T Consensus 180 ~~~v~~~~~~-G~~v~~wt--vn-~~~~~~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 180 KEFIRQAHQN-GKKVYVWT--VN-DPDDMQRYLAMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHHC-CCEEEEEc--CC-CHHHHHHHHHcCCCEEeCCCC
Confidence 5789999997 57777653 22 356788899999999976543
No 246
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.60 E-value=1.3e+02 Score=30.04 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
..+++.|.++|++-||+..|..++.+...+..+++
T Consensus 29 ~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~ 63 (378)
T PRK11858 29 LAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAK 63 (378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHh
Confidence 35667777888888888888777776655555544
No 247
>PRK06740 histidinol-phosphatase; Validated
Probab=28.38 E-value=91 Score=30.50 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTDHD 111 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITDHd 111 (333)
||..++++++++|.++|++.++||||-
T Consensus 58 ~~~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 58 YTTKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred CccchHHHHHHHHHHCCCcEEEECCCC
Confidence 788999999999999999999999996
No 248
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=28.34 E-value=1.5e+02 Score=27.93 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHh--CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 251 PLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 251 ~~~eevI~~I~~a--GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
.+.+++.++|..+ .|+..+.-+- ......+..+.+.|.+|| +..--++.++.+.+.+.++-
T Consensus 53 ~~~~~~~~~i~a~~~~g~~~lVRvp--~~~~~~i~r~LD~Ga~gi-ivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 53 NDVSTFIPQLMALKGSASAPVVRVP--TNEPVIIKRLLDIGFYNF-LIPFVETAEEARRAVASTRY 115 (256)
T ss_pred CCHHHHHHHHHHHhhcCCCcEEECC--CCCHHHHHHHhCCCCCee-eecCcCCHHHHHHHHHHcCC
Confidence 4445555444433 3344443221 123577888999999999 66667889999888887765
No 249
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=28.16 E-value=57 Score=31.18 Aligned_cols=29 Identities=41% Similarity=0.602 Sum_probs=25.3
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~ 104 (333)
.+++||+|- +|+++|+.|.+.+.+.|++.
T Consensus 3 pK~elH~Hl---~Gs~~~~~l~~~~~~~~~~~ 31 (325)
T cd01320 3 PKAELHLHL---DGSLRPETILELAKKNGITL 31 (325)
T ss_pred CceEEeecc---cCCCCHHHHHHHHHHhCCCC
Confidence 589999995 68899999999999998764
No 250
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.10 E-value=1e+02 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
.++++.|.++|++-||+.+|..++.+...+..+..
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~ 59 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ 59 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh
Confidence 45677788888888888888777777654444443
No 251
>PLN02417 dihydrodipicolinate synthase
Probab=28.02 E-value=2.6e+02 Score=26.41 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=33.3
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHh
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGS 313 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~ 313 (333)
|.++|+++-+.... ..++.+.+.++|.|+|-+..|+. +.++. .+..+++.
T Consensus 69 ~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 69 GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHh
Confidence 55889998875432 24566777889999999987743 33333 55566665
No 252
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=27.95 E-value=3.8e+02 Score=25.10 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=54.5
Q ss_pred HHHHhhcCCCCcccCCCCCC----HHHHHHHHHHhCCEEEEeCCCCCCC----cHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 019951 233 AFARYLYDGGPAYSTGSEPL----AEVAVQLIHRTGGLAVLAHPWALKN----PAAIIRKLKDVGLHGLEVYRSDGKLVG 304 (333)
Q Consensus 233 ~f~~yl~~~~~~yv~~~~~~----~eevI~~I~~aGGvaVLAHP~~~~~----~~~li~~l~~~GlDGIEv~~~~~~~~~ 304 (333)
.+.+....++|.|+.-..-+ ++++++.-++.| +.+-.|-+...- ..+++.++.+.|.|=+-+.-..++.++
T Consensus 83 ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~-vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~~D 161 (231)
T COG0710 83 LLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG-VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKED 161 (231)
T ss_pred HHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC-EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCHHH
Confidence 33444444446676433322 357777777777 778888665433 245667888889888888888888888
Q ss_pred HHHHHHHHhh
Q 019951 305 VIFTLQDGSL 314 (333)
Q Consensus 305 ~~~~~~~a~~ 314 (333)
.....++-++
T Consensus 162 vL~ll~~~~~ 171 (231)
T COG0710 162 VLDLLEATRE 171 (231)
T ss_pred HHHHHHHHHh
Confidence 8777777776
No 253
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.90 E-value=1.5e+02 Score=23.80 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=37.5
Q ss_pred CcccCCCCCCHHHHHHHHHHhCCEEEEeCCCCCC------------CcHHHHHHHHHcCCCEEEEe
Q 019951 243 PAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK------------NPAAIIRKLKDVGLHGLEVY 296 (333)
Q Consensus 243 ~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~------------~~~~li~~l~~~GlDGIEv~ 296 (333)
.+|+. ..|+++++|+.+.+.|.--|...|...- .++.+-..|.+.|+. ++++
T Consensus 35 ~~~lE-~~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipge~~~SW~~~l~~~g~~-v~~~ 98 (103)
T cd03413 35 VGTVE-GYPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAGDEPDSWKSILEAAGIK-VETV 98 (103)
T ss_pred EEEEc-CCCCHHHHHHHHHHcCCCEEEEEehhheecccchhcCCCCCchhHHHHHHHCCCe-eEEE
Confidence 35666 6799999999999998888888887431 124667777777876 5444
No 254
>PRK05473 hypothetical protein; Provisional
Probab=27.59 E-value=1.6e+02 Score=23.40 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=20.5
Q ss_pred HHHHHHHcCccchHHHHHHHhhcCCCCcccCCC
Q 019951 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 249 (333)
Q Consensus 217 ia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~ 249 (333)
+..+|.++||... +-.--||-.|.|+|++..
T Consensus 27 Vy~AL~EKGYNPi--nQiVGYllSGDPaYItsh 57 (86)
T PRK05473 27 VYDALEEKGYNPI--NQIVGYLLSGDPAYIPRH 57 (86)
T ss_pred HHHHHHHcCCChH--HHHHhhhccCCCCccCCc
Confidence 4567777777554 223457788889999743
No 255
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.55 E-value=2.9e+02 Score=25.59 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHH
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVG 304 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~ 304 (333)
..++++.+.+.+=++|+-.... ..-.++.+.|.+.||..||+-.......+
T Consensus 5 ~~~~~~~l~~~~vi~Vvr~~~~-~~a~~~~~al~~gGi~~iEiT~~tp~a~~ 55 (222)
T PRK07114 5 RIAVLTAMKATGMVPVFYHADV-EVAKKVIKACYDGGARVFEFTNRGDFAHE 55 (222)
T ss_pred HHHHHHHHHhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeCCCCcHHH
Confidence 3578899999999999875321 11246788999999999999986544333
No 256
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.46 E-value=2.9e+02 Score=25.31 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQ 310 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~ 310 (333)
++.-|+...++|.-.|.-|.-.......+++.+.+.|+..-=+.+|..+.+.+..+..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 5667777777777777777765444456677777777776667777776666655544
No 257
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.32 E-value=3.3e+02 Score=23.62 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhCCEEE--EeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHH
Q 019951 252 LAEVAVQLIHRTGGLAV--LAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGV 305 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaV--LAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~ 305 (333)
.+.+++++.+++|.=.+ ++=+- .+.+.+.++.++|+| ++|.|..+..+.
T Consensus 79 l~~~lve~lre~G~~~i~v~~GGv---ip~~d~~~l~~~G~~--~if~pgt~~~~~ 129 (143)
T COG2185 79 LVPGLVEALREAGVEDILVVVGGV---IPPGDYQELKEMGVD--RIFGPGTPIEEA 129 (143)
T ss_pred HHHHHHHHHHHhCCcceEEeecCc---cCchhHHHHHHhCcc--eeeCCCCCHHHH
Confidence 46789999999998544 33221 233457889999999 579998887776
No 258
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=27.30 E-value=57 Score=29.41 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=31.5
Q ss_pred ceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 76 ELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 76 DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
|+|+ |+|| ||.+.=-|...+|...|-..|||.-.|.
T Consensus 2 ~~~~-~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dg 38 (213)
T cd03753 2 DRGV-NTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEG 38 (213)
T ss_pred CCCC-ccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCE
Confidence 6777 5576 9999999999999999999999988664
No 259
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=27.28 E-value=1.7e+02 Score=29.33 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=38.4
Q ss_pred eEEceeeeCcCC--CCC---------------------CCHHHHH-------HHHHHcCCcEEEEecCCCC------CCH
Q 019951 73 VVFELHSHSNFS--DGY---------------------LSPSKLV-------ERAHCNGVKVLALTDHDTM------SGI 116 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG~---------------------~sp~eli-------~~A~~~Gl~~laITDHdt~------~g~ 116 (333)
-.+|.|+|...+ -|. ++|+++. ..+.+.|+..+. ||... .++
T Consensus 60 GlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~~ 137 (451)
T PRK08203 60 GLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSS--DHHYLFPNGLRDAL 137 (451)
T ss_pred ceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEE--cceeeccccccchH
Confidence 488999999765 222 2344432 233467877765 65432 125
Q ss_pred HHHHHHHHhCCCEEEEEEEE
Q 019951 117 PEAIETARRFGMKIIPGVEI 136 (333)
Q Consensus 117 ~~~~~~a~~~gi~~i~GiEi 136 (333)
..+.+++...|++.+.+...
T Consensus 138 ~~~~~a~~~~G~R~~~~~~~ 157 (451)
T PRK08203 138 DDQIEAAREIGMRFHATRGS 157 (451)
T ss_pred HHHHHHHHHcCCeEEEecce
Confidence 56677778899998876543
No 260
>PRK00971 glutaminase; Provisional
Probab=27.18 E-value=6e+02 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred CEEEEeCCC-----CCHHHHHHHHHHHhhcCC
Q 019951 291 HGLEVYRSD-----GKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 291 DGIEv~~~~-----~~~~~~~~~~~~a~~~~l 317 (333)
=||-||+|. ||......+..++++++|
T Consensus 273 ~gIav~SP~LD~~GNSv~G~~~le~ls~~~~l 304 (307)
T PRK00971 273 MAIAVWSPELDAKGNSLAGTAALERLSQRLGL 304 (307)
T ss_pred cEEEEECCCcCCCCCCHHHHHHHHHHHHHhCC
Confidence 589999984 688888999999999987
No 261
>PRK06380 metal-dependent hydrolase; Provisional
Probab=27.18 E-value=1.8e+02 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=38.2
Q ss_pred eEEceeeeCcCC--CC-------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCCHHHHHHHHH
Q 019951 73 VVFELHSHSNFS--DG-------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIETAR 124 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG-------------------~~sp~el-------i~~A~~~Gl~~laITDHdt~~g~~~~~~~a~ 124 (333)
-++|.|+|...+ .| .++++++ +..+.+.|+..+ .|+.. ....+.++++
T Consensus 55 G~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~--~d~~~--~~~~~~~a~~ 130 (418)
T PRK06380 55 GLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAF--VDLYY--SEDIIAKAAE 130 (418)
T ss_pred CEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEE--Ecccc--ChHHHHHHHH
Confidence 488999998765 22 2455554 334467788765 46542 2344556677
Q ss_pred hCCCEEEEEEEE
Q 019951 125 RFGMKIIPGVEI 136 (333)
Q Consensus 125 ~~gi~~i~GiEi 136 (333)
+.|++.+.|...
T Consensus 131 ~~G~r~~~~~~~ 142 (418)
T PRK06380 131 ELGIRAFLSWAV 142 (418)
T ss_pred HhCCeEEEeccc
Confidence 889988887654
No 262
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.17 E-value=2.5e+02 Score=27.45 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=33.4
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~G 133 (333)
+.+.+|+|+. ..++.+++.+++.|++ +.| .|.+.. ....+..++.++.++.+
T Consensus 193 ~~v~vHa~~~-----~~i~~~l~~~~e~g~~-~~i-~H~~~~--~~~~~~la~~gv~v~~~ 244 (359)
T cd01309 193 IPVRIHAHRA-----DDILTAIRIAKEFGIK-ITI-EHGAEG--YKLADELAKHGIPVIYG 244 (359)
T ss_pred eeEEEEeCCH-----HHHHHHHHHHHHcCCC-EEE-ECchhH--HHHHHHHHHcCCCEEEC
Confidence 6678887752 2488899999999998 333 565543 33445555677765543
No 263
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=27.01 E-value=2e+02 Score=26.81 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCC-----------CHHHHHHHHHHHhhcCCCcc
Q 019951 256 AVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-----------KLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 256 vI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-----------~~~~~~~~~~~a~~~~l~~~ 320 (333)
=|+-+.+.=|+-+++ |-.-.++.++++++++.|++.+=+--+.. +.+..+....+.++||+.|.
T Consensus 103 rve~lc~~lGl~~~~-PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 103 RVERLCEELGLKVYA-PLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred HHHHHHHHhCCEEee-cccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 356666666776776 65556788999999999999876665432 22334777889999998664
No 264
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=26.79 E-value=53 Score=30.98 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHhCCEEEEeCCCCCC--C-cH-HHHHHHHHcCCCEEEEeCCCCCHHHH-HHHHHHHhhcCC
Q 019951 250 EPLAEVAVQLIHRTGGLAVLAHPWALK--N-PA-AIIRKLKDVGLHGLEVYRSDGKLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 250 ~~~~eevI~~I~~aGGvaVLAHP~~~~--~-~~-~li~~l~~~GlDGIEv~~~~~~~~~~-~~~~~~a~~~~l 317 (333)
....++.++.|+..++.+++.||+... . +. ...+.. .-.+.||.+++++-...+ .++.+.+..|+.
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h--~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~ 167 (258)
T COG0613 97 QLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAH--IARDAVEVGNASTRQGVFNKYLKRGAPKYVP 167 (258)
T ss_pred cccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhh--hhhhhhccccccchHHHHHHHHhccCcccCc
Confidence 356789999999999999999998421 1 11 111111 125789999998876555 777888887774
No 265
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.60 E-value=3.1e+02 Score=26.22 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=50.4
Q ss_pred HHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHH----HHHHHHHhhcCCCccceeecccc
Q 019951 257 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGV----IFTLQDGSLFSLLPLTVLFGHFQ 328 (333)
Q Consensus 257 I~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~----~~~~~~a~~~~l~~~~~~~~~~~ 328 (333)
..+++++ .++|.-|-+--. ..+.+..+++.|++-|-+--+..+.+++ ..+.++|+.+|. +...-.||.|
T Consensus 67 ~~~a~~~-~vpv~lHlDH~~-~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv-~veaE~ghlG 139 (281)
T PRK06806 67 VAAAKQA-KVPVAVHFDHGM-TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGA-TVEAEIGRVG 139 (281)
T ss_pred HHHHHHC-CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeeEC
Confidence 4555566 467777765422 3578888999999988888777776666 777889999997 5666777776
No 266
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=26.54 E-value=1.9e+02 Score=29.98 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=55.1
Q ss_pred CHHHHHHHHH----HhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC------------CCCCHHHHHHHHHHHhhc
Q 019951 252 LAEVAVQLIH----RTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR------------SDGKLVGVIFTLQDGSLF 315 (333)
Q Consensus 252 ~~eevI~~I~----~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~------------~~~~~~~~~~~~~~a~~~ 315 (333)
.+++++..-. ++=|+.|=--|.... ++.+..+..+|..-||+-- -.|+.++...+-++++.+
T Consensus 169 ~le~a~~~ne~~~~r~vgitiETRPD~~~--ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~ 246 (515)
T COG1243 169 DLEEAQRKNETAELRCVGITIETRPDYID--EEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDA 246 (515)
T ss_pred hHHHHHHhhcccccceeEEEEecCccccC--HHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhc
Confidence 3777766533 334566666676544 5789999999999999852 248999999999999999
Q ss_pred CC-Cccceeecccccc
Q 019951 316 SL-LPLTVLFGHFQSN 330 (333)
Q Consensus 316 ~l-~~~~~~~~~~~~~ 330 (333)
|| ..-.+.-|-.||+
T Consensus 247 GfKv~~HiMpGLPgs~ 262 (515)
T COG1243 247 GFKVGYHIMPGLPGSD 262 (515)
T ss_pred CcEEEEEecCCCCCCC
Confidence 99 3344555656655
No 267
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=26.52 E-value=6.2e+02 Score=24.79 Aligned_cols=132 Identities=19% Similarity=0.208 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccc-hHHHHHHHhhcCCCCcccCCCCCCHHH
Q 019951 178 GRFLRAKDMILKLNK-LKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE-NLKQAFARYLYDGGPAYSTGSEPLAEV 255 (333)
Q Consensus 178 ~R~~r~~~~i~~L~~-~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~-~~~~~f~~yl~~~~~~yv~~~~~~~ee 255 (333)
.|.++..+.+..|.. .-+.++.+-...-.. ...-..-||.+|...|+.+ +...+.+-|+.+ |-+. .+..+
T Consensus 134 ~r~~~il~~~~~lag~~~i~~d~~Va~Se~~--t~~rN~AiA~~l~~~G~l~~dv~~al~~Y~~q---Cai~---~~~~d 205 (309)
T COG2066 134 ERWERILEFVRGLAGDRRLTLDEEVAQSERE--TAFRNRAIAYLLKSFGNLEHDVEEALDVYFHQ---CAIE---MNCVD 205 (309)
T ss_pred HHHHHHHHHHHHhcCCCceeecHHHHHHHhc--cchhhHHHHHHHHhCCccCCCHHHHHHHHHHH---HHHH---hhHHH
Confidence 344444444444443 224454443322221 1234466888999999998 577777777653 1121 22222
Q ss_pred --HHHHHHHhCCEEEEeCCCCCCC-cHHHHH-HHH-------------HcC-----------------CCEEEEeCCC--
Q 019951 256 --AVQLIHRTGGLAVLAHPWALKN-PAAIIR-KLK-------------DVG-----------------LHGLEVYRSD-- 299 (333)
Q Consensus 256 --vI~~I~~aGGvaVLAHP~~~~~-~~~li~-~l~-------------~~G-----------------lDGIEv~~~~-- 299 (333)
.+-+.-++||+.-+.|.--... ....+. .++ ..| --||-||+|.
T Consensus 206 LA~~g~~LA~~G~~p~tge~v~~~~~ar~i~a~M~TcGmYd~sG~fa~rVGlP~KSGVgGGI~AvvPg~~gIav~sP~Ld 285 (309)
T COG2066 206 LARLGLFLANGGVNPLTGERVVPADQARQINALMLTCGMYDASGEFAYRVGLPAKSGVGGGIMAVVPGEMGIAVWSPALD 285 (309)
T ss_pred HHHHHHHHhcCCcCCCCCCcCCCHHHHHHHHHHHHHccccccchhhHhhcCCccccCcccceEEEccCCcEEEEECCccC
Confidence 3455666777655555422111 111121 111 112 2688999984
Q ss_pred ---CCHHHHHHHHHHHhhcCC
Q 019951 300 ---GKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 300 ---~~~~~~~~~~~~a~~~~l 317 (333)
|+......+-.++++.|+
T Consensus 286 ~~GNSv~G~~~le~Ls~~~g~ 306 (309)
T COG2066 286 EAGNSVAGIAALEQLSQQLGL 306 (309)
T ss_pred cCCCchHHHHHHHHHHHHhCc
Confidence 678888888888988886
No 268
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.48 E-value=1.2e+02 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQD 311 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~ 311 (333)
..+++.|.++|+|-||+-++..++.+..++.++
T Consensus 23 ~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~ 55 (273)
T cd07941 23 LRIARKLDELGVDYIEGGWPGSNPKDTEFFARA 55 (273)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHH
Confidence 456778888888888887666555655544433
No 269
>PRK08123 histidinol-phosphatase; Reviewed
Probab=26.39 E-value=1.4e+02 Score=27.92 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=39.3
Q ss_pred HHHHHHHHhCC---EEEEeCCCC---C--CC-----------cHHHHHHHHHcCCCEEEEeCCCC------CHHHHHHHH
Q 019951 255 VAVQLIHRTGG---LAVLAHPWA---L--KN-----------PAAIIRKLKDVGLHGLEVYRSDG------KLVGVIFTL 309 (333)
Q Consensus 255 evI~~I~~aGG---vaVLAHP~~---~--~~-----------~~~li~~l~~~GlDGIEv~~~~~------~~~~~~~~~ 309 (333)
.+++++....+ +-|||||.. + .. ..++++.+++.|+- ||+..+.- .+--....+
T Consensus 157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g~~-lEINtsgl~~~~~~~~yP~~~il 235 (270)
T PRK08123 157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRGYE-LDFNTAGLRKPYCGEPYPPGEII 235 (270)
T ss_pred HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcCCE-EEEEchhhcCCCCCCCCCcHHHH
Confidence 34445544332 459999972 1 11 14577888899975 99997532 122236788
Q ss_pred HHHhhcCC
Q 019951 310 QDGSLFSL 317 (333)
Q Consensus 310 ~~a~~~~l 317 (333)
++++++|.
T Consensus 236 ~~~~e~g~ 243 (270)
T PRK08123 236 TLAKKLGI 243 (270)
T ss_pred HHHHHcCC
Confidence 89999987
No 270
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=26.34 E-value=2.3e+02 Score=27.33 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=55.2
Q ss_pred HHHhhcCCCCcccCCCCCCHHHHHHHHHHhCCEE----EEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCC---HHHHH
Q 019951 234 FARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA----VLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK---LVGVI 306 (333)
Q Consensus 234 f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGva----VLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~---~~~~~ 306 (333)
+.+....|..-++-.+..+++..=+++..++-.+ |-=||.... .++++...+.||- +|+|+|-.. .-...
T Consensus 126 lE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~-v~AysPL~~g~~l~~~~ 202 (280)
T COG0656 126 LEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIA-VEAYSPLAKGGKLLDNP 202 (280)
T ss_pred HHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCE-EEEECCcccccccccCh
Confidence 3344444443344444566666666666655433 356887533 5688999999998 999999654 44447
Q ss_pred HHHHHHhhcCCCccce
Q 019951 307 FTLQDGSLFSLLPLTV 322 (333)
Q Consensus 307 ~~~~~a~~~~l~~~~~ 322 (333)
.....|++||-.|..|
T Consensus 203 ~l~~Ia~k~g~t~AQv 218 (280)
T COG0656 203 VLAEIAKKYGKTPAQV 218 (280)
T ss_pred HHHHHHHHhCCCHHHH
Confidence 7788888887666544
No 271
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=26.16 E-value=2.5e+02 Score=27.91 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=48.8
Q ss_pred ccCCCCCCHHHHHHHHHHhCCEEEEeCCCCC--CCcHHHHHHH---HHcCCC-EEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 019951 245 YSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL--KNPAAIIRKL---KDVGLH-GLEVYRSDGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 245 yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~--~~~~~li~~l---~~~GlD-GIEv~~~~~~~~~~~~~~~~a~~~~l~ 318 (333)
|.++..++ ++++.+.-+||==-|=-||.+. +.....++.+ .+.|.| |+|+---.+-.+.+.++++++.++++.
T Consensus 116 YT~g~~~~-~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~e~~i~e~~~~~~~~~~~ 194 (353)
T COG2108 116 YTTGILAT-EEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIPAIPGEEEAILEFAKALDENGLD 194 (353)
T ss_pred eeccccCC-HHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecCCCcchHHHHHHHHHHHHhcccc
Confidence 34444443 6788888888877888888522 2223344433 477864 677665555666677888888888865
Q ss_pred ccce
Q 019951 319 PLTV 322 (333)
Q Consensus 319 ~~~~ 322 (333)
=.|+
T Consensus 195 FlNi 198 (353)
T COG2108 195 FLNI 198 (353)
T ss_pred eeee
Confidence 4444
No 272
>PRK09389 (R)-citramalate synthase; Provisional
Probab=26.13 E-value=1.4e+02 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
.++++.|.++|+|-||+-+|..++.+...+.+++.
T Consensus 27 ~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~ 61 (488)
T PRK09389 27 LEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD 61 (488)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh
Confidence 45778888999999999998888877777666654
No 273
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.12 E-value=2.2e+02 Score=25.19 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=33.6
Q ss_pred eEEceeeeCcCCCCCCCHHHH-HHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCCEEEEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKL-VERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPG 133 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~el-i~~A~~~Gl~~laITDHdt~~g--~~~~~~~a~~~gi~~i~G 133 (333)
+.+|+|++ .|... ++++.+.|.+.+.+ |-.... ..++.+.+++.|++++++
T Consensus 55 i~~d~k~~--------d~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 55 VLADLKTM--------DAGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEEEeec--------cchHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 55566555 33334 89999999998874 222222 357778888899877653
No 274
>PRK06361 hypothetical protein; Provisional
Probab=26.07 E-value=2.9e+02 Score=24.53 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=39.9
Q ss_pred HHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 257 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 257 I~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
++++ ++|-+-|||||+... .++++.+++.|+- ||+..+...........++|+++|+
T Consensus 106 ~~a~-~~~~~dvlaHpd~~~--~~~~~~~~~~~~~-lEin~~~~~~~~~~~~l~~a~~~gi 162 (212)
T PRK06361 106 LAAI-ECEDVDILAHPGLIT--EEEAELAAENGVF-LEITARKGHSLTNGHVARIAREAGA 162 (212)
T ss_pred HHHH-hCCCCcEecCcchhh--HHHHHHHHHcCeE-EEEECCCCcccchHHHHHHHHHhCC
Confidence 4444 677899999998643 4567777777664 8888754444445678888888886
No 275
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.03 E-value=55 Score=31.04 Aligned_cols=26 Identities=31% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCC
Q 019951 86 GYLSPSKLVERAHCNGVKVLALTDHD 111 (333)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~laITDHd 111 (333)
-+-..-++++.|+++|.+.|+|||.-
T Consensus 189 ~t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 189 YTREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 34567788999999999999999973
No 276
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.85 E-value=1.3e+02 Score=24.53 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEE
Q 019951 89 SPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i 131 (333)
...++++.+.+.|.+.+-+.-. .--+++.+.+++.|++++
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEE
Confidence 4567899999999999999765 334678888899999987
No 277
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.77 E-value=3.1e+02 Score=25.29 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred ccCCCCCCHHHHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCcccee
Q 019951 245 YSTGSEPLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLTVL 323 (333)
Q Consensus 245 yv~~~~~~~eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 323 (333)
|||.-.... ++|+.|++.. -+++=+|-.- .++...++.+++.|.|-|.+.+-.. ....++.+..++.|..+-..+
T Consensus 42 FVPN~tfg~-~~i~~lr~~~~~~~~dvHLMv-~~P~~~i~~~~~~gad~I~~H~Ea~--~~~~~~l~~Ir~~g~k~Glal 117 (223)
T PRK08745 42 YVPNLTIGP-MVCQALRKHGITAPIDVHLMV-EPVDRIVPDFADAGATTISFHPEAS--RHVHRTIQLIKSHGCQAGLVL 117 (223)
T ss_pred cCCCcccCH-HHHHHHHhhCCCCCEEEEecc-CCHHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCceeEEe
No 278
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=25.70 E-value=99 Score=31.04 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred EEEeC-------CCCCCCcHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHHHHHHhhcCCC
Q 019951 267 AVLAH-------PWALKNPAAIIRKLKDVGLHGLEVYRS---DGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 267 aVLAH-------P~~~~~~~~li~~l~~~GlDGIEv~~~---~~~~~~~~~~~~~a~~~~l~ 318 (333)
+|.|| ++...+-...|..+.+.||||.-+.-- ......+..+.+-|...||.
T Consensus 1 ~VfAH~mvgn~~~yt~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFK 62 (386)
T PF03659_consen 1 AVFAHFMVGNTYNYTQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFK 62 (386)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCE
No 279
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=25.62 E-value=1.5e+02 Score=25.19 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEE
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (333)
.+.++.+|+. |+.|.++.- +..+.+..+...|+|||..
T Consensus 150 ~~~i~~~~~~-g~~v~~wtv---n~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHAA-GLKVYVWTV---NDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHHc-CCEEEEEcC---CCHHHHHHHHHCCCCEEec
Confidence 5789999995 788887543 2357788889999999864
No 280
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=25.52 E-value=3.4e+02 Score=24.75 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=23.6
Q ss_pred HHHHHHHh-CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcC
Q 019951 256 AVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFS 316 (333)
Q Consensus 256 vI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~ 316 (333)
+|+.|++. .|..|.+|--..+-+.-..+.+.++|.|.+.|... ...+....+.+.++++|
T Consensus 46 ~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~-a~~~~i~~~~~~~~~~g 106 (216)
T PRK13306 46 AVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICA-AHIPTIKAALKVAKEFN 106 (216)
T ss_pred HHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCC-CCHHHHHHHHHHHHHcC
Confidence 44444444 34445554332222211122344555554444432 23333344444444333
No 281
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.34 E-value=76 Score=28.45 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC
Q 019951 89 SPSKLVERAHCNGVKVLALTDHD 111 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~laITDHd 111 (333)
.+-++++.|+++|.+.|+||+.+
T Consensus 126 ~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 126 NVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred HHHHHHHHHHHCCCeEEEEECCC
Confidence 35556666666666666666643
No 282
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=25.33 E-value=2.1e+02 Score=27.22 Aligned_cols=52 Identities=8% Similarity=-0.014 Sum_probs=32.1
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhc
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLF 315 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~ 315 (333)
|-++|+++-+.... ..++.+.+.+.|.|||-+..|+. +.++. .++.+++..-
T Consensus 69 ~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 69 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence 44788888764332 24556677888888888877743 33333 5666666543
No 283
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=25.30 E-value=1.3e+02 Score=26.30 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEE
Q 019951 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 295 (333)
..+.|+.+|+. |+.|.++.- ......+..+.++|+|||-.
T Consensus 138 ~~~~v~~~~~~-g~~v~~wtv--n~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 138 DTELIASANKL-GLLSRIWTV--NDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CHHHHHHHHHC-CCEEEEEee--CChHHHHHHHHHcCCCEEeC
Confidence 35788999986 577776643 22157788999999999853
No 284
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=25.26 E-value=2e+02 Score=27.40 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 252 ~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
++...+.++...|..++.-=|+ .....+..+.++|.+|| ++.--++.++.+.+.+.++
T Consensus 56 ~l~~~i~a~~~~g~~~lVRvp~---~~~~~i~r~LD~GA~GI-ivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 56 DLYHQLQAIAPYASQPVIRPVE---GSKPLIKQVLDIGAQTL-LIPMVDTAEQARQVVSATR 113 (267)
T ss_pred HHHHHHHHHHhcCCCeEEECCC---CCHHHHHHHhCCCCCee-EecCcCCHHHHHHHHHhcC
Confidence 3445555665545444333332 23567888999999999 5555788899988888776
No 285
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.12 E-value=2.5e+02 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 84 SDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 84 SDG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
.....+++++++.+.+...+.++|+=.++
T Consensus 33 lg~~~~~~~l~~~~~~~~pdvV~iS~~~~ 61 (119)
T cd02067 33 LGVDVPPEEIVEAAKEEDADAIGLSGLLT 61 (119)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEecccc
Confidence 35668999999999999999999986533
No 286
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=25.10 E-value=1.6e+02 Score=30.82 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
..+++.|.++|+|-||+-+|..++++...+..+++.
T Consensus 109 i~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~ 144 (503)
T PLN03228 109 LEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKT 144 (503)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 467889999999999999999998888777776654
No 287
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.09 E-value=2.6e+02 Score=25.59 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcC
Q 019951 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFS 316 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~ 316 (333)
++++.+.+.+=++|+..... ..-..+.+.|.+.||.-||+-... +.-.....++.++|+
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~ 63 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYK 63 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcC
Confidence 46788888888899876421 122467888999999999998763 334445555666664
No 288
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=25.07 E-value=1.5e+02 Score=27.55 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEE
Q 019951 241 GGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 294 (333)
Q Consensus 241 ~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIE 294 (333)
+...+.+.......+.|+.+|++ |+.|.+.-- +....+..+.++|+|||.
T Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~-g~~v~~WTV---n~~~~~~~l~~~GVdgIi 249 (252)
T cd08574 200 GISRLNLEYSQLSAQEIREYSKA-NISVNLYVV---NEPWLYSLLWCSGVQSVT 249 (252)
T ss_pred CCeEEccCcccCCHHHHHHHHHC-CCEEEEEcc---CCHHHHHHHHHcCCCEEe
No 289
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.02 E-value=1.9e+02 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
..+++.|.+.|+-|+=+....+-.+--..+.++|.+++|
T Consensus 62 ~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~l 100 (123)
T PF07905_consen 62 REFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGL 100 (123)
T ss_pred HHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCC
Confidence 446677777777777665543333333667777777776
No 290
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.89 E-value=1.3e+02 Score=26.09 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCE--EEEeCCCCCC-CcHHHHHHHHHcCCCEEEEeCCC
Q 019951 254 EVAVQLIHRTGGL--AVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRSD 299 (333)
Q Consensus 254 eevI~~I~~aGGv--aVLAHP~~~~-~~~~li~~l~~~GlDGIEv~~~~ 299 (333)
.+.|+.||++.+- .|+--|+.|. .+..+.+.+...++--|||.=|.
T Consensus 53 GelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSN 101 (141)
T TIGR01088 53 GQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSN 101 (141)
T ss_pred HHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCC
Confidence 4899999999543 5777799886 45778889999999999999553
No 291
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.88 E-value=2.3e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCEEEE-eCCCCCCCcHHHHHHHHHcCCCEEEEe
Q 019951 253 AEVAVQLIHRTGGLAVL-AHPWALKNPAAIIRKLKDVGLHGLEVY 296 (333)
Q Consensus 253 ~eevI~~I~~aGGvaVL-AHP~~~~~~~~li~~l~~~GlDGIEv~ 296 (333)
.++.++.+++.|--+++ --|. .+.+.++.+.+...+-|-+.
T Consensus 118 ~~~~~~~~~~~g~~~i~~i~P~---T~~~~i~~i~~~~~~~vy~~ 159 (242)
T cd04724 118 AEEFREAAKEYGLDLIFLVAPT---TPDERIKKIAELASGFIYYV 159 (242)
T ss_pred HHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHhhCCCCEEEE
Confidence 44688888998865544 3343 34566777777555555543
No 292
>PLN02428 lipoic acid synthase
Probab=24.87 E-value=2.9e+02 Score=27.48 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=23.8
Q ss_pred CceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH
Q 019951 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI 120 (333)
Q Consensus 71 ~~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~ 120 (333)
.|+++-+- .| -...++-+..++.+|..||=. -...++.|.+
T Consensus 53 ~wl~~~~~------~~-~~~~~~~~~~~~~~l~tvc~~--a~cpn~~ec~ 93 (349)
T PLN02428 53 KWLRQRAP------GG-EKYTEIKEKLRELKLNTVCEE--AQCPNIGECW 93 (349)
T ss_pred cceeecCC------CC-chHHHHHHHHHHCCCceeecC--CCCCChHHhh
Confidence 47776652 22 246677777788888876532 3333444433
No 293
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.64 E-value=82 Score=27.38 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCC
Q 019951 87 YLSPSKLVERAHCNGVKVLALTDHDTM 113 (333)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~laITDHdt~ 113 (333)
+-..-++++.|++.|.+.++|||...-
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 345567899999999999999996544
No 294
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.61 E-value=2.5e+02 Score=23.98 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=6.7
Q ss_pred HHHHHHcCCCEEEEe
Q 019951 282 IRKLKDVGLHGLEVY 296 (333)
Q Consensus 282 i~~l~~~GlDGIEv~ 296 (333)
.+.+.+.|.|+|.+.
T Consensus 71 a~~a~~~Gad~i~v~ 85 (201)
T cd00945 71 VEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHcCCCEEEEe
Confidence 344444444444443
No 295
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.54 E-value=1.4e+02 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.039 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQD 311 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~ 311 (333)
..+++.|.++|++-||+-+|.....+...+..+
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l 55 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMGEEEREAIRAI 55 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHH
Confidence 345566666777777776665554443333333
No 296
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.50 E-value=83 Score=23.22 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 019951 87 YLSPSKLVERAHCNGVKVLALT 108 (333)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~laIT 108 (333)
+-...+++++|+++|.+.++||
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4457789999999999999999
No 297
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=24.37 E-value=2.6e+02 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCCEEEEEEEE
Q 019951 96 RAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEI 136 (333)
Q Consensus 96 ~A~~~Gl~~laITDHdt~~--g~~~~~~~a~~~gi~~i~GiEi 136 (333)
.+.+.|+..+. ||.... ......+++...|++.+.|-+.
T Consensus 119 e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 159 (429)
T cd01303 119 ELLRNGTTTAC--YFATIHPESTEALFEEAAKRGQRAIAGKVC 159 (429)
T ss_pred HHHhCCceEEE--eecccChhHHHHHHHHHHHhCCeEEEeeee
Confidence 44677887776 765442 3345566677889998887665
No 298
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=24.36 E-value=76 Score=25.41 Aligned_cols=43 Identities=30% Similarity=0.391 Sum_probs=30.2
Q ss_pred ccccccccCCceEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 62 HQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 62 ~~~~~~~~~~~~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
++++-|+ -.=-.|.|+.+|- -..|.+-.|+..|++. .+|||.-
T Consensus 43 R~IlirE----~I~IVHgH~a~S~---l~hE~i~hA~~mGlkt-VfTDHSL 85 (90)
T PF08288_consen 43 RNILIRE----RIDIVHGHQAFST---LCHEAILHARTMGLKT-VFTDHSL 85 (90)
T ss_pred HHHHHHc----CeeEEEeehhhhH---HHHHHHHHHHhCCCcE-Eeecccc
Confidence 4555665 2225799999882 2245778899999995 5899964
No 299
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.25 E-value=93 Score=25.28 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=25.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 019951 83 FSDGYLSPSKLVERAHCNGVKVLALTDHDTM 113 (333)
Q Consensus 83 ~SDG~~sp~eli~~A~~~Gl~~laITDHdt~ 113 (333)
+|--+-.+-+.++.|+++|.+.++||+...-
T Consensus 56 ~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 56 HSGNTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CCCCChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3444567888999999999999999996543
No 300
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.22 E-value=1.3e+02 Score=29.61 Aligned_cols=35 Identities=23% Similarity=0.068 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
..+++.|.++|++-||+-+|..+..+...+..+++
T Consensus 26 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~ 60 (365)
T TIGR02660 26 LAIARALDEAGVDELEVGIPAMGEEERAVIRAIVA 60 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677788888888888888777666655555543
No 301
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=24.15 E-value=1.6e+02 Score=28.40 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHh-CCCEEEEEEEEe
Q 019951 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR-FGMKIIPGVEIS 137 (333)
Q Consensus 91 ~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~-~gi~~i~GiEis 137 (333)
-++++.|.+.|++.+-++||.....+.-+...+.. ..|++-+|+-+.
T Consensus 16 ~~~a~~AE~~Gfd~~w~~eh~~~d~~~~laa~a~~T~ri~lgt~v~~~ 63 (325)
T TIGR03559 16 VDLVAAAEKAGLDSVWVAEAYGFDAVTPLGYLAARTSRVRLGTGVLQL 63 (325)
T ss_pred HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHHhCCceeEEeeeecC
Confidence 34566777999999999999876655444333333 568887777543
No 302
>PLN02591 tryptophan synthase
Probab=24.10 E-value=1.3e+02 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEE
Q 019951 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~ 132 (333)
.++.++.|++.|++.+-|-| -.+.-..++.+.+++.|+.+|+
T Consensus 95 ~~~F~~~~~~aGv~GviipD-LP~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPD-LPLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCC-CCHHHHHHHHHHHHHcCCeEEE
No 303
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.07 E-value=2.5e+02 Score=26.68 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=32.2
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCCEEEEeCCCC---CHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG---KLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~---~~~~~-~~~~~~a~~~~l 317 (333)
|.++|++|-+. .. ..++.+.+.+.|.|++-+..|+. +.++. .++.+++..-++
T Consensus 73 g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~ 131 (296)
T TIGR03249 73 GKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDL 131 (296)
T ss_pred CCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCC
Confidence 44788888763 21 13455667778888888877753 33333 666666665543
No 304
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.01 E-value=1.3e+02 Score=28.58 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=21.3
Q ss_pred HHHHHH-HHcCCCEEEEeCCCCCHHHHHHHHHHH
Q 019951 280 AIIRKL-KDVGLHGLEVYRSDGKLVGVIFTLQDG 312 (333)
Q Consensus 280 ~li~~l-~~~GlDGIEv~~~~~~~~~~~~~~~~a 312 (333)
++++.| .++|++-||+-++..++++...+.+++
T Consensus 23 ~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~ 56 (280)
T cd07945 23 NIAKILLQELKVDRIEVASARVSEGEFEAVQKII 56 (280)
T ss_pred HHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHH
Confidence 455664 455888888887766766665555554
No 305
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.99 E-value=4.5e+02 Score=22.35 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHHhCC
Q 019951 186 MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG 265 (333)
Q Consensus 186 ~i~~L~~~g~~i~~e~l~~~~~~~~~~~~~hia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~aGG 265 (333)
+.+.|.+.|+.+ .+.|..|+++|.+.+-.-+..+.|......+. +....++..++++..++|=
T Consensus 8 ~~~~lk~~glr~-------------T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p----~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRL-------------TPQRLAVLELLLEADGHLSAEELYEELREEGP----GISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCc-------------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCC----CCCHhHHHHHHHHHHHCCC
Confidence 445566667665 35666788888876444555666666655432 2334667788888888887
Q ss_pred EEEEeCCC
Q 019951 266 LAVLAHPW 273 (333)
Q Consensus 266 vaVLAHP~ 273 (333)
|-.++-.+
T Consensus 71 v~~~~~~~ 78 (145)
T COG0735 71 VHRLEFEG 78 (145)
T ss_pred EEEEEeCC
Confidence 77666655
No 306
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.96 E-value=1.2e+02 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeC
Q 019951 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 297 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~ 297 (333)
+.|+.|++.--+++=.|-.- .++...++.++++|.|-|-+..
T Consensus 47 ~~i~~i~~~~~~~~DvHLMv-~~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 47 DIIKAIRKITDLPLDVHLMV-ENPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp HHHHHHHTTSSSEEEEEEES-SSGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHhhcCCCcEEEEeee-ccHHHHHHHHHhcCCCEEEEcc
Confidence 45555555544555555432 2344455555555555444433
No 307
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=23.72 E-value=1.4e+02 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
|...++++.|+..|+..+ -|.+.. ...+++.+.+.|+|++-+-..
T Consensus 186 p~~k~i~~~i~~~~~~~~-lH~cg~--~~~~~~~l~~~~~d~~~~d~~ 230 (306)
T cd00465 186 PAYKKVAEYKAAGEVPIV-HHSCYD--AADLLEEMIQLGVDVISFDMT 230 (306)
T ss_pred HHHHHHHHHHhhcCCceE-EEECCC--HHHHHHHHHHhCcceEecccc
Confidence 345677888887665444 476642 246788899999887765544
No 308
>PRK01076 L-rhamnose isomerase; Provisional
Probab=23.70 E-value=1.6e+02 Score=29.91 Aligned_cols=55 Identities=20% Similarity=0.108 Sum_probs=32.6
Q ss_pred hCCE-EEEeCCCCCCCcHHHHHHHHHc-----CCCEEEEeCCCC-----------CHHHHHHHHHHHhhcCC
Q 019951 263 TGGL-AVLAHPWALKNPAAIIRKLKDV-----GLHGLEVYRSDG-----------KLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 263 aGGv-aVLAHP~~~~~~~~li~~l~~~-----GlDGIEv~~~~~-----------~~~~~~~~~~~a~~~~l 317 (333)
.||| +.-..|++.+++.+++..+... |=.-|-..-++. .++++..+.++|++.|+
T Consensus 56 ~gGi~~tgnypG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~Gl 127 (419)
T PRK01076 56 TGGIQATGNYPGKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGL 127 (419)
T ss_pred ccccceecCCCCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCC
Confidence 4666 5566777766665555443221 333344444444 66777777788877776
No 309
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=23.64 E-value=3.9e+02 Score=27.14 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=55.3
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHhC------CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC------------
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS------------ 298 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~------------ 298 (333)
||+.|-|-+.+. -.+++++++|++.= -+.+=++|.... .+.+..+.++|+.-|.+---
T Consensus 119 y~GGGTPs~L~~--~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t--~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR 194 (449)
T PRK09058 119 YFGGGTPTALSA--EDLARLITALREYLPLAPDCEITLEGRINGFD--DEKADAALDAGANRFSIGVQSFNTQVRRRAGR 194 (449)
T ss_pred EECCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCC--HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCC
Confidence 555554433221 12466777777741 356778887643 67899999999987766432
Q ss_pred CCCHHHHHHHHHHHhhcCCCccc--eeecc
Q 019951 299 DGKLVGVIFTLQDGSLFSLLPLT--VLFGH 326 (333)
Q Consensus 299 ~~~~~~~~~~~~~a~~~~l~~~~--~~~~~ 326 (333)
.|+.++...+.+.+++.|+..-+ +.||-
T Consensus 195 ~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl 224 (449)
T PRK09058 195 KDDREEVLARLEELVARDRAAVVCDLIFGL 224 (449)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEeeC
Confidence 35677777888888888864333 44553
No 310
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=23.59 E-value=1.5e+02 Score=28.41 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
.+++..|.++|+|-||+-.|..+.++..-+.+++.+
T Consensus 26 i~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~ 61 (284)
T cd07942 26 LRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEE 61 (284)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHc
Confidence 356777788888888887777777766666666444
No 311
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.44 E-value=2.3e+02 Score=26.82 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCcc
Q 019951 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPL 320 (333)
Q Consensus 255 evI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~ 320 (333)
+-+..++++=.++||..-+-. ...-|.+...+|-|+|=.....=+.+++....++|+..|++|+
T Consensus 99 ~dL~~v~~~~~~PvL~KDFIi--d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~l 162 (254)
T PF00218_consen 99 EDLRAVRKAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEAL 162 (254)
T ss_dssp HHHHHHHHHSSS-EEEES-----SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHhCCCcccccCCC--CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeE
Confidence 344445554455665532211 1345677788999999888888888888999999999998765
No 312
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=23.40 E-value=1.6e+02 Score=28.04 Aligned_cols=49 Identities=14% Similarity=0.018 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHh-CCCEEEEEEEEeee
Q 019951 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR-FGMKIIPGVEISTI 139 (333)
Q Consensus 91 ~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~-~gi~~i~GiEis~~ 139 (333)
-++++.|.+.|++.+-+.||....++.-+...+.. ..|++-+|+-+...
T Consensus 13 ~~~a~~AE~~Gfd~~w~~e~~~~d~~~~laalA~~T~ri~lgt~v~~~~~ 62 (301)
T TIGR03841 13 TRLARAADELGYTDVWSGEMAGYDAFALATLVAAWAPRLRLGVGPLPVTV 62 (301)
T ss_pred HHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHhCCcceEeeccccCCC
Confidence 44567788999999999999877666544444433 46888777766543
No 313
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=23.31 E-value=7.9e+02 Score=24.88 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCcEEE----Ee-cCCCCCCHHHHHHHHHhCCCEEEEEEEEe
Q 019951 90 PSKLVERAHCNGVKVLA----LT-DHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 90 p~eli~~A~~~Gl~~la----IT-DHdt~~g~~~~~~~a~~~gi~~i~GiEis 137 (333)
.|--++.|+-.|+.-.| |. |..++.-.+++.++|++.++.++.+-++-
T Consensus 145 tEaavdL~~lAgl~Paavi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli 197 (402)
T PRK09311 145 TEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADEHDLALITIADLI 197 (402)
T ss_pred HHHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHHcCCeEEEeechH
Confidence 56677777888884333 32 23456667778888888888887777764
No 314
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.29 E-value=91 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC
Q 019951 88 LSPSKLVERAHCNGVKVLALTDHDTM 113 (333)
Q Consensus 88 ~sp~eli~~A~~~Gl~~laITDHdt~ 113 (333)
-..-++++.|+++|.+.++||+...-
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 44568899999999999999996553
No 315
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=23.25 E-value=3.4e+02 Score=24.15 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=27.0
Q ss_pred EEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEE
Q 019951 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKI 130 (333)
Q Consensus 74 ~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~ 130 (333)
.+.+||+.. +.++++.+++.+.....|..|. ..+...+.+++ +.|+.+
T Consensus 123 pv~iH~~~~-------~~~~~~l~~~~~~~~~~i~H~~-~~~~~~~~~~~-~~g~~~ 170 (251)
T cd01310 123 PVVIHSRDA-------HEDVLEILKEYGPPKRGVFHCF-SGSAEEAKELL-DLGFYI 170 (251)
T ss_pred CeEEEeeCc-------hHHHHHHHHhcCCCCCEEEEcc-CCCHHHHHHHH-HcCCEE
Confidence 367777742 7889999999883334444443 33333444433 345433
No 316
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.22 E-value=2.5e+02 Score=26.40 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=34.1
Q ss_pred CCEEEEeCCCCCC--CcHHHHHHHHHcCCCEEEEeCCC---CCHHHH-HHHHHHHhhcCC
Q 019951 264 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSD---GKLVGV-IFTLQDGSLFSL 317 (333)
Q Consensus 264 GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~---~~~~~~-~~~~~~a~~~~l 317 (333)
|.++|+++-+... +..++.+.+.++|+||+-+..|+ .+.++. .++.++|..-++
T Consensus 69 ~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 69 GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 5578888765433 22456677788899999888765 344444 666677755543
No 317
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=23.13 E-value=82 Score=26.39 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEe
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALT 108 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laIT 108 (333)
-.+-.+-+.++.|+++|+..|+||
T Consensus 114 G~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 114 GNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp S-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEe
Confidence 334567789999999999999998
No 318
>COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]
Probab=23.10 E-value=2.1e+02 Score=27.24 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCC--CH---HHHHHH-HHhCCCEEEEEEEEeeeecCCC------C---CCCCcEEEE
Q 019951 90 PSKLVERAHCNGVKVLALTDHDTMS--GI---PEAIET-ARRFGMKIIPGVEISTIFCQRG------S---ESEEPVHIL 154 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHdt~~--g~---~~~~~~-a~~~gi~~i~GiEis~~~~~~~------~---~~~~~vHiL 154 (333)
..++++.|.+.|++.+-+.||.+.. .. .-+... +.-..|++..|+-+...++|.. + --+++ -.|
T Consensus 18 ~~~la~~AE~~Gfd~~~~~eh~~~~~~~~~p~~~laalA~~T~~I~lgt~v~~l~~~~P~~~A~~~atLd~Ls~GR-~~l 96 (336)
T COG2141 18 LRDLAQAAERLGFDSVWVAEHHNAPGASPDPFVLLAALAAATSRIRLGTGVVLLPYRHPAVVARQAATLDHLSGGR-ADL 96 (336)
T ss_pred HHHHHHHHHHcCCCEEEccccccCCCCCCChHHHHHHHHHHhCcCceEEEEecCCCCChHHHHHHHHHHHHhcCCc-EEE
Confidence 3499999999999999999999864 22 112222 2346788888887776653310 0 12333 466
Q ss_pred EeeccCCCCccHHHHHHHHHH-HhhHHHHHHHHHHHHHh
Q 019951 155 AYYSSCGPSKYEELENFLANI-RDGRFLRAKDMILKLNK 192 (333)
Q Consensus 155 ~y~~d~~~~~~~~L~~~l~~~-~~~R~~r~~~~i~~L~~ 192 (333)
+++....+. ....+-... ...|..+..+.++.|..
T Consensus 97 gig~g~~~~---~~~~~g~~~~~~~r~~~~~E~l~~l~~ 132 (336)
T COG2141 97 GLGTGWGPE---EAAAFGALPFHAERYARLREFLEVLRA 132 (336)
T ss_pred EEecCCChH---HHhhcCCCCccchHHHHHHHHHHHHHH
Confidence 776432111 111111011 24566666666666654
No 319
>PRK14055 aromatic amino acid hydroxylase; Provisional
Probab=23.05 E-value=37 Score=33.57 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHHHHh-CCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHH-----HHHHHHhhcCCCccceeecccc
Q 019951 258 QLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVI-----FTLQDGSLFSLLPLTVLFGHFQ 328 (333)
Q Consensus 258 ~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~-----~~~~~a~~~~l~~~~~~~~~~~ 328 (333)
|.+|+. |=++.|+||.. .....++-.+|+.++|...+-.+.++.. ....+||-||+ ||-||=-+
T Consensus 197 DifHEvfGHvPmLanP~F----AdF~q~~G~~glkA~e~~~sL~~~ee~ie~~~~~l~~LaRLYWF---TVEFGLI~ 266 (362)
T PRK14055 197 DLIHDLLGHVPWLLHPSF----SEFFINMGRLFTKVIEKVQALPSKKQRIQTLQSNLIAIVRCFWF---TVESGLIE 266 (362)
T ss_pred hHHHHhhccchhhcCHHH----HHHHHHHHHHHHHHhhhhhcccchHHHHHhhhhHHHHhhheeee---eeeeeeec
Confidence 677887 55799999953 3445555555666554443333333322 23469999999 78887543
No 320
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=22.81 E-value=1.4e+02 Score=23.31 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=24.6
Q ss_pred HHHHHHHcCccchHHHHHHHhhcCCCCcccCCCCCCHHHHHHHHHH
Q 019951 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (333)
Q Consensus 217 ia~~Lv~~g~~~~~~~~f~~yl~~~~~~yv~~~~~~~eevI~~I~~ 262 (333)
+.++|.++||... +-.--||-.|.|+|++.. .+|-.+|++
T Consensus 24 Vy~AL~EKGYnPi--nQivGYllSGDPaYItsh----~nAR~lIr~ 63 (79)
T PF06135_consen 24 VYAALEEKGYNPI--NQIVGYLLSGDPAYITSH----NNARNLIRK 63 (79)
T ss_pred HHHHHHHcCCChH--HHHHhheecCCCccccCc----ccHHHHHHH
Confidence 4566777777544 223457888899999743 344455544
No 321
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=22.69 E-value=70 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=17.9
Q ss_pred eEEceeeeCcCC-CCCCCHHHHHHHHHHcCCcE
Q 019951 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVKV 104 (333)
Q Consensus 73 ~~~DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~ 104 (333)
-.+|+|+|-.+. .....+......+.+.|+..
T Consensus 35 G~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT 67 (68)
T PF13594_consen 35 GFIDMHTHLGEPGWQSLDPETEAAAALAGGVTT 67 (68)
T ss_dssp -EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred CeEeeeeccccccccccchhhHHHHHHCcceee
Confidence 578999997643 23344455555555777654
No 322
>PRK05481 lipoyl synthase; Provisional
Probab=22.64 E-value=3.7e+02 Score=25.63 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHhhcCC
Q 019951 301 KLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 301 ~~~~~~~~~~~a~~~~l 317 (333)
+.+++....++.++.++
T Consensus 209 T~ed~~~tl~~lrel~~ 225 (289)
T PRK05481 209 TDEEVLEVMDDLRAAGV 225 (289)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 44444444444444443
No 323
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.59 E-value=1.7e+02 Score=24.73 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHcCCcEEEE--ecCCCCC----------------CHHHHHHHHHhCCCEEEEEEEEe
Q 019951 89 SPSKLVERAHCNGVKVLAL--TDHDTMS----------------GIPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~laI--TDHdt~~----------------g~~~~~~~a~~~gi~~i~GiEis 137 (333)
.|+++++.+++.+++.+.| -+|+.+. -+.++.++|++.||+++.=+-++
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4789999999999999999 5665532 13567888999999988777666
No 324
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.53 E-value=87 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 019951 83 FSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 83 ~SDG~~sp~eli~~A~~~Gl~~laITDHdt 112 (333)
+|.-+-...++++.|++.|.+.++||+...
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 455566778889999999999999998644
No 325
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=22.46 E-value=4.5e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEe
Q 019951 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY 296 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~ 296 (333)
..+.++++.|++.|-.+.+|= ....+.+.+..+.+ -+|.|=+.
T Consensus 93 ~~~~~~l~~ik~~g~k~Glal--nP~Tp~~~i~~~l~-~~D~vlvM 135 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVL--NPATPLHHLEYIMD-KVDLILLM 135 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHH-hCCeEEEE
Confidence 457789999999998877763 11234444444433 35655554
No 326
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=22.46 E-value=4.4e+02 Score=21.58 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHhCCE-EEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCCCccceeecc
Q 019951 251 PLAEVAVQLIHRTGGL-AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSLLPLTVLFGH 326 (333)
Q Consensus 251 ~~~eevI~~I~~aGGv-aVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 326 (333)
+.+.++++.+++.|.. +|+.+-.+ ......++.+...-++.|-+.......-.-..+...++++++.|..+.+||
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~-~~~~~~~~~~l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~~~l~iGD 142 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSL-RAQKLLLRKHLGDYFDLILGSDEFGAKPEPEIFLAALESLGLPPEVLHVGD 142 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCch-HHHHHHHHHHHHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCCCEEEEeC
Confidence 5688999999888754 44543221 111223333222335555433222211123566777788999885577776
No 327
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=22.40 E-value=1.8e+02 Score=26.39 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 298 (333)
++.|+.+|++| +.|... ..+ ....+..+.++|+|||..-+.
T Consensus 195 ~~~v~~~~~~G-l~v~vw--TVn-~~~~~~~l~~~GVdgiiTD~~ 235 (237)
T cd08583 195 DKLIEKLNKAG-IYVYVY--TIN-DLKDAQEYKKLGVYGIYTDFL 235 (237)
T ss_pred HHHHHHHHHCC-CEEEEE--eCC-CHHHHHHHHHcCCCEEEeCCC
Confidence 57899999985 666653 333 356788999999999986654
No 328
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.31 E-value=2.4e+02 Score=25.61 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEE
Q 019951 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (333)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i 131 (333)
.++.++.++.+++.|++.|-+.. ..-....++.+.+++.|+++.
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLF-PYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecC-CccCCHHHHHHHHHHcCCeEE
Confidence 47899999999999999999953 111235667777888898753
No 329
>PLN02522 ATP citrate (pro-S)-lyase
Probab=22.23 E-value=1.4e+02 Score=31.90 Aligned_cols=71 Identities=13% Similarity=-0.014 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC---Cccce
Q 019951 250 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL---LPLTV 322 (333)
Q Consensus 250 ~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l---~~~~~ 322 (333)
+-+++|+++.-..+.-..+.+.|..- .+..++++.+.|+..+-|+...-++.+...+.++|+++|. =||.+
T Consensus 66 f~tv~eA~~~~~~~~~~vifvp~~~a--~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~ 139 (608)
T PLN02522 66 HGSIEAACKAHPTADVFINFASFRSA--AASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATV 139 (608)
T ss_pred cchHHHHHHhCCCCcEEEEeCChHHh--HHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCC
Confidence 34677777653355555666655321 2578888888899999999988887778899999999986 35553
No 330
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.20 E-value=2.1e+02 Score=26.33 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEec---CC---CC--CCHHHHHHHHHhCCCEEE
Q 019951 86 GYLSPSKLVERAHCNGVKVLALTD---HD---TM--SGIPEAIETARRFGMKII 131 (333)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~laITD---Hd---t~--~g~~~~~~~a~~~gi~~i 131 (333)
...++++.++.+++.|++.|-+.- |. .. ....++.+.+++.|+++.
T Consensus 11 ~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 11 QRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 346899999999999999999852 21 11 135567777788898764
No 331
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.10 E-value=1.6e+02 Score=27.13 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 299 (333)
.+.|+.+|++| +.|.+. ..+ ..+.+..+.++|+|||..-+|.
T Consensus 208 ~~~v~~~~~~g-~~v~~w--Tvn-~~~~~~~l~~~Gvd~IiTD~p~ 249 (256)
T cd08601 208 PWMVHLIHKKG-LLVHPY--TVN-EKADMIRLINWGVDGMFTNYPD 249 (256)
T ss_pred HHHHHHHHHCC-CEEEEE--ecC-CHHHHHHHHhcCCCEEEeCCHH
Confidence 57899999996 666554 323 3567888999999999876653
No 332
>TIGR03560 F420_Rv1855c probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis.
Probab=21.85 E-value=2.2e+02 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.139 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCC
Q 019951 89 SPSKLVERAHCNGVKVLALTDHDT 112 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~laITDHdt 112 (333)
..-++++.|.+.|++.+.+.||..
T Consensus 14 ~~~~~a~~AE~~Gfd~vw~~eh~~ 37 (227)
T TIGR03560 14 DLLAVARAAEDAGFDALFRSDHFL 37 (227)
T ss_pred HHHHHHHHHHHcCCCEEEEchhcc
Confidence 345677788899999999999974
No 333
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.73 E-value=2.5e+02 Score=22.17 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCC
Q 019951 250 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLH 291 (333)
Q Consensus 250 ~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlD 291 (333)
.|.+.|+|+.+++.|--.++--=...+....+.+.|..+||+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 467899999999998653333211112336788999999998
No 334
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.72 E-value=1.3e+02 Score=27.51 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEEEEEEe
Q 019951 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~GiEis 137 (333)
|+..-.+-+++|.+.|-+++- +-.--++..++|++.++.++||+.--
T Consensus 73 GTV~~~~~~~~a~~aGA~Fiv-----sP~~~~~v~~~~~~~~i~~iPG~~T~ 119 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQFIV-----SPSFNRETAKICNLYQIPYLPGCMTV 119 (213)
T ss_pred eeCCCHHHHHHHHHcCCCEEE-----CCCCCHHHHHHHHHcCCCEECCcCCH
Confidence 444444556999999999876 33345778889999999999998643
No 335
>PRK12677 xylose isomerase; Provisional
Probab=21.70 E-value=2.1e+02 Score=28.70 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCC-----CC-----HHHHHHHHHhCCCE
Q 019951 87 YLSPSKLVERAHCNGVKVLALTDHDTM-----SG-----IPEAIETARRFGMK 129 (333)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~laITDHdt~-----~g-----~~~~~~~a~~~gi~ 129 (333)
.+++++.++++.+.|++.|.+.+-+.. .. +.++.+.++..|++
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCe
Confidence 369999999999999999999753322 11 34556667778886
No 336
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=21.69 E-value=4.6e+02 Score=23.51 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC-CC----HHHHHHHHHhCCCEEEEEEEEeee
Q 019951 88 LSPSKLVERAHCNGVKVLALTDHDTM-SG----IPEAIETARRFGMKIIPGVEISTI 139 (333)
Q Consensus 88 ~sp~eli~~A~~~Gl~~laITDHdt~-~g----~~~~~~~a~~~gi~~i~GiEis~~ 139 (333)
.+|.++++...+.|++.+-|+|=+.. .| +..+.+.++..++.++.|=-|...
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ 86 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSL 86 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCH
Confidence 59999999999999999999998765 34 223334445567777777666653
No 337
>PLN02161 beta-amylase
Probab=21.56 E-value=1.4e+02 Score=31.20 Aligned_cols=40 Identities=23% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCEEEE--eCC--------CCCHHHHHHHHHHHhhcCCC
Q 019951 279 AAIIRKLKDVGLHGLEV--YRS--------DGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv--~~~--------~~~~~~~~~~~~~a~~~~l~ 318 (333)
..-|..|+.+|+|||++ |.. ..+.+.+..+.+++++.||.
T Consensus 120 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLK 169 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLK 169 (531)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCe
Confidence 34578889999999875 332 23667779999999999984
No 338
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=21.35 E-value=1.6e+02 Score=30.88 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
..+.+.|.++|+|-||+-+|..++.+...+.++++
T Consensus 26 l~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~ 60 (526)
T TIGR00977 26 IRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKE 60 (526)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHH
Confidence 35667788888888888888888888777777664
No 339
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.30 E-value=4e+02 Score=24.23 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCC---------------CCCHHHHHHHHHhCCCEEEEEEEEeee
Q 019951 91 SKLVERAHCNGVKVLALTDHDT---------------MSGIPEAIETARRFGMKIIPGVEISTI 139 (333)
Q Consensus 91 ~eli~~A~~~Gl~~laITDHdt---------------~~g~~~~~~~a~~~gi~~i~GiEis~~ 139 (333)
.+.++.|.+.|++.+.|.+.-+ +....++.+.+++.|+.+...+|-.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 140 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG 140 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 7889999999999999999765 223344566678889988888875543
No 340
>PLN02803 beta-amylase
Probab=21.27 E-value=1.9e+02 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCEEEE--eCC--------CCCHHHHHHHHHHHhhcCCC
Q 019951 280 AIIRKLKDVGLHGLEV--YRS--------DGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 280 ~li~~l~~~GlDGIEv--~~~--------~~~~~~~~~~~~~a~~~~l~ 318 (333)
.-|..|+.+|+|||++ |.. ..+...+..+.+++++.||.
T Consensus 111 ~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLK 159 (548)
T PLN02803 111 ASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLK 159 (548)
T ss_pred HHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCe
Confidence 4578889999999875 332 24667779999999999984
No 341
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.26 E-value=90 Score=27.09 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHcCCcEEEEecC
Q 019951 89 SPSKLVERAHCNGVKVLALTDH 110 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~laITDH 110 (333)
..-++++.|+++|.+.++||+-
T Consensus 116 ~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 116 NVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 4455666666666666666654
No 342
>PRK07583 cytosine deaminase-like protein; Validated
Probab=21.18 E-value=2.3e+02 Score=28.51 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=40.3
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCH------HHHHHHHHhCCCEEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGI------PEAIETARRFGMKII 131 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g~------~~~~~~a~~~gi~~i 131 (333)
..+++|+|-.-..+...++.+.+.+.+.|+..-.+.+|.+.-+. .+..+..++.|+.++
T Consensus 226 ~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv 290 (438)
T PRK07583 226 LDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIV 290 (438)
T ss_pred CCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEE
Confidence 44566665433455566888999999999877788899876442 244555666787766
No 343
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=21.17 E-value=2.6e+02 Score=27.16 Aligned_cols=76 Identities=11% Similarity=-0.024 Sum_probs=51.0
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHhCCEEEEeCCC--CCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 019951 240 DGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPW--ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFSL 317 (333)
Q Consensus 240 ~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~--~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~l 317 (333)
.+....+|. .+...++.+|..+|..+|+.--. .+.-..+.++.+....-++|=+.|....+.++....++|+++|+
T Consensus 64 ~gdeVi~p~--~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i 141 (363)
T PF01041_consen 64 PGDEVIVPA--YTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGI 141 (363)
T ss_dssp TTSEEEEES--SS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-
T ss_pred cCceEecCC--CcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCC
Confidence 444444554 34446899999999999998643 33334566777778788999898988888899999999999996
No 344
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=21.15 E-value=1.3e+02 Score=31.66 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=39.9
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCC--CCCC---HHHHHHHHHhCCCEEEEEEE
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD--TMSG---IPEAIETARRFGMKIIPGVE 135 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHd--t~~g---~~~~~~~a~~~gi~~i~GiE 135 (333)
-.+|.|+|...|- .+|+++...+...|+..+..--|. ++.| +..+.+.+++..+.++.++-
T Consensus 51 G~ID~H~Hi~~~~--~~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~ 116 (552)
T TIGR01178 51 GFIDAHIHIESSM--LTPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLP 116 (552)
T ss_pred CeEecccccCCCC--CChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECC
Confidence 5789999986542 368888888999999877654343 2223 44455555556666655544
No 345
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.11 E-value=3.2e+02 Score=25.04 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCEEE---EeCCCCCC---C----cHHHHHHHHHcCCCEEEEeCCC-----C-CHH-------HHHHHH
Q 019951 253 AEVAVQLIHRTGGLAV---LAHPWALK---N----PAAIIRKLKDVGLHGLEVYRSD-----G-KLV-------GVIFTL 309 (333)
Q Consensus 253 ~eevI~~I~~aGGvaV---LAHP~~~~---~----~~~li~~l~~~GlDGIEv~~~~-----~-~~~-------~~~~~~ 309 (333)
+++.++.+.+.|--.| +..|..+. . ..++.+.+.+.||. |-+..|+ . +++ .+..+.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 5677888888865333 44453321 1 13344555677886 5454332 1 112 225567
Q ss_pred HHHhhcCC
Q 019951 310 QDGSLFSL 317 (333)
Q Consensus 310 ~~a~~~~l 317 (333)
++|.++|-
T Consensus 91 ~~A~~lGa 98 (273)
T smart00518 91 KRCEELGI 98 (273)
T ss_pred HHHHHcCC
Confidence 78888873
No 346
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.11 E-value=4.1e+02 Score=26.14 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCEEEEeCCC
Q 019951 280 AIIRKLKDVGLHGLEVYRSD 299 (333)
Q Consensus 280 ~li~~l~~~GlDGIEv~~~~ 299 (333)
+.++.+.+.|++.|-++-+.
T Consensus 76 ~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 76 ADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHcCCcCEEEEEEcc
Confidence 44566666666666666543
No 347
>PLN02321 2-isopropylmalate synthase
Probab=20.96 E-value=1.4e+02 Score=32.08 Aligned_cols=36 Identities=14% Similarity=-0.014 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSL 314 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~ 314 (333)
.++++.|.++|+|-||+-+|..++.+...+.++++.
T Consensus 111 l~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~ 146 (632)
T PLN02321 111 LDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKE 146 (632)
T ss_pred HHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHh
Confidence 457889999999999999988888888887777765
No 348
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=20.91 E-value=91 Score=27.94 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=31.9
Q ss_pred ceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 019951 76 ELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTM 113 (333)
Q Consensus 76 DLH~HT~~S-DG~~sp~eli~~A~~~Gl~~laITDHdt~ 113 (333)
|++. |.|| ||.+.=-|...+|...|-..|||.-.|.+
T Consensus 2 ~~~~-~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgV 39 (209)
T cd01911 2 DRSI-TTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGV 39 (209)
T ss_pred CCCC-ccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEE
Confidence 5556 7787 99999999999999999999999887653
No 349
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=20.86 E-value=8.4e+02 Score=24.30 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=37.5
Q ss_pred eEEceeeeCcCC---CCC--CCHHHHHHHHHHcCCcEEEEecCCCCCCH-------HHHHHHHHhCCCEEEEE
Q 019951 73 VVFELHSHSNFS---DGY--LSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (333)
Q Consensus 73 ~~~DLH~HT~~S---DG~--~sp~eli~~A~~~Gl~~laITDHdt~~g~-------~~~~~~a~~~gi~~i~G 133 (333)
-.+|.|+|.... ++. .+|+--+..+.+.|+..+. |.-..+++ ....+.....||+-+.+
T Consensus 57 GlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~--d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~ 127 (389)
T TIGR01975 57 GFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVV--GLLGTDGITRHMESLLAKARALEEEGISCYML 127 (389)
T ss_pred CEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEe--cCcccCccccChhhHHHHHHHHHHhCCEEEEE
Confidence 578999998753 444 6788777888999999876 54322222 12233345567765544
No 350
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=20.84 E-value=42 Score=30.86 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHcCCc
Q 019951 89 SPSKLVERAHCNGVK 103 (333)
Q Consensus 89 sp~eli~~A~~~Gl~ 103 (333)
++.+--.+.+..|..
T Consensus 90 s~~~kkk~~kdkg~~ 104 (217)
T PF15333_consen 90 SQQEKKKRLKDKGFQ 104 (217)
T ss_pred cHHHHHHHHHhcCCC
Confidence 444444555555554
No 351
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=20.79 E-value=5.9e+02 Score=25.05 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=51.0
Q ss_pred HHHHHHHHHhC-CEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHH----HHHHHHHhhcCCCccceeecccc
Q 019951 254 EVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGV----IFTLQDGSLFSLLPLTVLFGHFQ 328 (333)
Q Consensus 254 eevI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~----~~~~~~a~~~~l~~~~~~~~~~~ 328 (333)
..+....++++ .++|.-|-+--. ..+.+.+..+.|+..|=+--|..+.+++ .++.++|..+|. .----.|+.+
T Consensus 73 ~~~~~~a~~a~~~VPV~lHLDHg~-~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~Gv-sVEaElG~ig 150 (321)
T PRK07084 73 QGAVEYAKELGCPIPIVLHLDHGD-SFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDV-TVEGELGVLA 150 (321)
T ss_pred HHHHHHHHHcCCCCcEEEECCCCC-CHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEeeec
Confidence 34566677776 688888865322 3567888889999888777777666666 778889998887 3334455544
No 352
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=20.76 E-value=1.8e+02 Score=29.50 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHh
Q 019951 279 AAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGS 313 (333)
Q Consensus 279 ~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~ 313 (333)
..+...|-++|+|-||+-+|..++.+.+.+...+.
T Consensus 27 i~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~ 61 (409)
T COG0119 27 IRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAE 61 (409)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHH
Confidence 45677888999999999999999988888777775
No 353
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=20.70 E-value=2e+02 Score=27.85 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=33.9
Q ss_pred eEEceeeeCcCC--CC--------------------CCCHHHHHHH-------HHHcCCcEEEEecCCCCCCHHHHHHHH
Q 019951 73 VVFELHSHSNFS--DG--------------------YLSPSKLVER-------AHCNGVKVLALTDHDTMSGIPEAIETA 123 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG--------------------~~sp~eli~~-------A~~~Gl~~laITDHdt~~g~~~~~~~a 123 (333)
-.+|.|+|...| .| ..+++++... +.+.|+..+. ||..... ....+.+
T Consensus 57 Glid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~~~~~-~~~~~~~ 133 (411)
T cd01298 57 GLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFA--DMYFFYP-DAVAEAA 133 (411)
T ss_pred CccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEE--Cccccch-HHHHHHH
Confidence 478999998654 11 1345544332 3457876544 6654433 3344445
Q ss_pred HhCCCEEEEEEEE
Q 019951 124 RRFGMKIIPGVEI 136 (333)
Q Consensus 124 ~~~gi~~i~GiEi 136 (333)
...|+++..+.++
T Consensus 134 ~~~g~r~~~~~~~ 146 (411)
T cd01298 134 EELGIRAVLGRGI 146 (411)
T ss_pred HHhCCeEEEEcce
Confidence 5567776665554
No 354
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.66 E-value=2.7e+02 Score=25.47 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEE
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i 131 (333)
-..++.++.+++|++.|++.|-|.... .....++.+.+++.|+.+.
T Consensus 12 ~~~~~l~~~l~~~a~~Gf~~VEl~~~~-~~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 12 FGEYDFLARFEKAAQCGFRGVEFMFPY-DYDIEELKQVLASNKLEHT 57 (258)
T ss_pred ccCCCHHHHHHHHHHhCCCEEEEcCCC-CCCHHHHHHHHHHcCCcEE
Confidence 345689999999999999999986422 2346677888888999863
No 355
>PTZ00413 lipoate synthase; Provisional
Probab=20.54 E-value=6e+02 Score=25.84 Aligned_cols=18 Identities=0% Similarity=0.038 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHcCCcEEE
Q 019951 89 SPSKLVERAHCNGVKVLA 106 (333)
Q Consensus 89 sp~eli~~A~~~Gl~~la 106 (333)
...++-+..++.+|..|+
T Consensus 110 ~~~~~~~~~~~~~L~TVC 127 (398)
T PTZ00413 110 RFNRIRRSMREKKLHTVC 127 (398)
T ss_pred hHHHHHHHHHhCCCceee
Confidence 456677777777887665
No 356
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=20.51 E-value=1.8e+02 Score=27.88 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhCCEEEE--eC----CC---CC---CCc----HHHHHHHHHcCCCEE---EEeCCCCCHHHHHHHHHH
Q 019951 251 PLAEVAVQLIHRTGGLAVL--AH----PW---AL---KNP----AAIIRKLKDVGLHGL---EVYRSDGKLVGVIFTLQD 311 (333)
Q Consensus 251 ~~~eevI~~I~~aGGvaVL--AH----P~---~~---~~~----~~li~~l~~~GlDGI---Ev~~~~~~~~~~~~~~~~ 311 (333)
.+.++.++..+++|--.+. +. |. .+ +.. .+.++.+.++|+.-- =+-.+ .+.++....+..
T Consensus 104 ~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~-Et~ed~~~~l~~ 182 (309)
T TIGR00423 104 LSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV-ENPEHRVEHLLR 182 (309)
T ss_pred CCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCC-CCHHHHHHHHHH
Confidence 3457889999998865442 10 00 00 111 345677777776521 11122 366666555555
Q ss_pred HhhcC
Q 019951 312 GSLFS 316 (333)
Q Consensus 312 a~~~~ 316 (333)
.++.+
T Consensus 183 lr~l~ 187 (309)
T TIGR00423 183 IRKIQ 187 (309)
T ss_pred HHhhc
Confidence 55544
No 357
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.51 E-value=5.4e+02 Score=25.77 Aligned_cols=56 Identities=23% Similarity=0.436 Sum_probs=41.9
Q ss_pred eEEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHHHhCCCEEEEEEEEeee
Q 019951 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKIIPGVEISTI 139 (333)
Q Consensus 73 ~~~DLH~HT~~SDG~~sp~eli~~A~~~Gl~~laITDHdt~~g----~~~~~~~a~~~gi~~i~GiEis~~ 139 (333)
+.+|+|.. -.++-.|.+.|++.+=|-==| +.. +.++.+.|++.++.+-.|+---..
T Consensus 83 lvADIHFd----------~~lAl~a~~~G~~~iRINPGN-ig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL 142 (360)
T PRK00366 83 LVADIHFD----------YRLALAAAEAGADALRINPGN-IGKRDERVREVVEAAKDYGIPIRIGVNAGSL 142 (360)
T ss_pred EEEecCCC----------HHHHHHHHHhCCCEEEECCCC-CCchHHHHHHHHHHHHHCCCCEEEecCCccC
Confidence 77888854 257788899999999886533 333 456778899999998889877654
No 358
>PRK15076 alpha-galactosidase; Provisional
Probab=20.50 E-value=1.5e+02 Score=30.13 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=61.2
Q ss_pred hhcCCCCcccCCCCCCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhhcC
Q 019951 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVGVIFTLQDGSLFS 316 (333)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~~~~~a~~~~ 316 (333)
..+.||-+|...+-+-+.++++.|.+.+==+++= .+.||..++.+++. ++...-|+-..|.+-... ..+|+.++
T Consensus 111 t~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~ii---n~tNP~divt~~~~-~~~~~rviG~c~~~~~~~--~~ia~~l~ 184 (431)
T PRK15076 111 TLGIGGIMRALRTIPVLLDICEDMEEVCPDALLL---NYVNPMAMNTWAMN-RYPGIKTVGLCHSVQGTA--EQLARDLG 184 (431)
T ss_pred CcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEE---EcCChHHHHHHHHh-cCCCCCEEEECCCHHHHH--HHHHHHhC
Confidence 3455555566666677888999998885322221 34677667766654 666666777777765555 77899999
Q ss_pred CCccceeecccccc
Q 019951 317 LLPLTVLFGHFQSN 330 (333)
Q Consensus 317 l~~~~~~~~~~~~~ 330 (333)
+.+..|-+--||+|
T Consensus 185 v~~~~v~~~~~GlN 198 (431)
T PRK15076 185 VPPEELRYRCAGIN 198 (431)
T ss_pred CCHHHeEEEEEeec
Confidence 99999988888887
No 359
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=20.40 E-value=6.4e+02 Score=22.76 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHhCCEEEEeCCCCCCCcHHHHH-HHHHcCCCEE--E-EeCCC----CCHHHHHHHHHHHhhcCCC-c
Q 019951 249 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIR-KLKDVGLHGL--E-VYRSD----GKLVGVIFTLQDGSLFSLL-P 319 (333)
Q Consensus 249 ~~~~~eevI~~I~~aGGvaVLAHP~~~~~~~~li~-~l~~~GlDGI--E-v~~~~----~~~~~~~~~~~~a~~~~l~-~ 319 (333)
..|.+.++++.+++.|-...++-= .....+. .+...|+.+. . ++.+. .+| .-..+...++++|+. |
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~----~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP-~p~~~~~a~~~l~~~~~ 174 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTG----YTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRP-APWMALKNAIELGVYDV 174 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECC----CcHHHHHHHHHHHHhcCCCCceEEccccCCCCCC-CHHHHHHHHHHcCCCCc
Confidence 357789999999999765555521 1222222 2333444332 1 12221 122 224456677788884 6
Q ss_pred c-ceeecc
Q 019951 320 L-TVLFGH 326 (333)
Q Consensus 320 ~-~~~~~~ 326 (333)
. .+.+||
T Consensus 175 ~~~l~IGD 182 (253)
T TIGR01422 175 AACVKVGD 182 (253)
T ss_pred hheEEECC
Confidence 5 556776
No 360
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=20.39 E-value=2.7e+02 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHHcCCcEEEEecCCCCC----C-HHHHHHHHHhCCCEEEEEEEEe
Q 019951 97 AHCNGVKVLALTDHDTMS----G-IPEAIETARRFGMKIIPGVEIS 137 (333)
Q Consensus 97 A~~~Gl~~laITDHdt~~----g-~~~~~~~a~~~gi~~i~GiEis 137 (333)
+.+.|... +.||.... + .....+++.+.|++.+.|.++.
T Consensus 116 ~l~~GtTt--~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 159 (441)
T TIGR03314 116 AIKSGCTT--VIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETS 159 (441)
T ss_pred HHHcCCeE--EEecccccccccchHHHHHHHHHHhCCeEEEeeeee
Confidence 35667654 55774322 2 3445667788999998887764
No 361
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.39 E-value=3e+02 Score=25.55 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC-CH----HHHHHHHHhCCCEEEEEEEEee
Q 019951 87 YLSPSKLVERAHCNGVKVLALTDHDTMS-GI----PEAIETARRFGMKIIPGVEIST 138 (333)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~laITDHdt~~-g~----~~~~~~a~~~gi~~i~GiEis~ 138 (333)
..+|.++++++.+.|.+.+-++|-+... +- .-+.+.++..++.++.|==|..
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s 85 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS 85 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC
Confidence 3589999999999999999999999763 21 1223344556677777666654
No 362
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.30 E-value=1.4e+02 Score=28.32 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCEEEE
Q 019951 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (333)
Q Consensus 90 p~eli~~A~~~Gl~~laITDHdt~~g~~~~~~~a~~~gi~~i~ 132 (333)
+++.++.|++.|++.+-|-| -.+.-..++.+.+++.|+.+|+
T Consensus 104 ~e~F~~~~~~aGvdGlIipD-LP~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPD-LPPEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETT-SBGGGHHHHHHHHHHTT-EEEE
T ss_pred hHHHHHHHHHcCCCEEEEcC-CChHHHHHHHHHHHHcCCeEEE
No 363
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=20.15 E-value=5.4e+02 Score=25.59 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCC--CcHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHHHHHHhhcCCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRS---DGKLVGVIFTLQDGSLFSLL 318 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~---~~~~~~~~~~~~~a~~~~l~ 318 (333)
-++|++.+..=|--+-.|-+... -..+.++.|.++|||=|-+..+ ....+.+...+..|++||..
T Consensus 97 ~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~d 166 (353)
T COG2108 97 VEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMD 166 (353)
T ss_pred HHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCcc
Confidence 35667777777777877865421 2367888999999998866653 22344456667777777763
No 364
>PRK06687 chlorohydrolase; Validated
Probab=20.13 E-value=2.2e+02 Score=28.26 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=35.8
Q ss_pred eEEceeeeCcCC--CC--------------------CCCHHHHHH-------HHHHcCCcEEEEecCCCCC--CHHHHHH
Q 019951 73 VVFELHSHSNFS--DG--------------------YLSPSKLVE-------RAHCNGVKVLALTDHDTMS--GIPEAIE 121 (333)
Q Consensus 73 ~~~DLH~HT~~S--DG--------------------~~sp~eli~-------~A~~~Gl~~laITDHdt~~--g~~~~~~ 121 (333)
-.||.|+|...+ -| .++|+++.. .+.+.|+..+. |+.+.. ......+
T Consensus 59 GlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~--d~~~~~~~~~~~~~~ 136 (419)
T PRK06687 59 GLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFN--DMYNPNGVDIQQIYQ 136 (419)
T ss_pred ceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceee--hhhccccccHHHHHH
Confidence 488999999776 11 234443322 22566776654 654332 2345566
Q ss_pred HHHhCCCEEEEEEE
Q 019951 122 TARRFGMKIIPGVE 135 (333)
Q Consensus 122 ~a~~~gi~~i~GiE 135 (333)
++++.|++...+.+
T Consensus 137 a~~~~Gir~~~~~~ 150 (419)
T PRK06687 137 VVKTSKMRCYFSPT 150 (419)
T ss_pred HHHHhCCceEeccc
Confidence 67777887766544
No 365
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.11 E-value=1.7e+02 Score=26.74 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCEEEEeCCCCCCCcHHHHHHHHHcCCCEEEEeCCC
Q 019951 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (333)
Q Consensus 254 eevI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 299 (333)
++.|+..|++ |+.|.+. .. +..+.+..+.+.|+|||..-+|.
T Consensus 202 ~~~v~~~~~~-G~~v~vW--TV-N~~~~~~~l~~~gVdgIiTD~p~ 243 (249)
T cd08561 202 PRFVRAAHAA-GLEVHVW--TV-NDPAEMRRLLDLGVDGIITDRPD 243 (249)
T ss_pred HHHHHHHHHC-CCEEEEE--ec-CCHHHHHHHHhcCCCEEEcCCHH
Confidence 5788999998 4666653 33 33577888999999999887653
No 366
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.10 E-value=1.6e+02 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecC
Q 019951 85 DGYLSPSKLVERAHCNGVKVLALTDH 110 (333)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~laITDH 110 (333)
|...+++++++.+.+.+.+.++||=+
T Consensus 35 d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 35 DANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp ESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 45556799999999999999999754
Done!