Query 019952
Match_columns 333
No_of_seqs 150 out of 1100
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00498 FHA: FHA domain; Int 99.6 7.4E-15 1.6E-19 109.6 7.9 67 30-105 1-68 (68)
2 KOG2293 Daxx-interacting prote 99.6 4.8E-15 1E-19 150.7 7.8 105 12-118 432-536 (547)
3 cd00060 FHA Forkhead associate 99.5 2.1E-13 4.5E-18 106.3 12.9 88 19-113 12-100 (102)
4 TIGR03354 VI_FHA type VI secre 99.3 4E-12 8.6E-17 126.6 10.4 90 18-115 14-105 (396)
5 COG1716 FOG: FHA domain [Signa 99.2 2.8E-10 6.1E-15 99.3 11.9 82 23-116 84-167 (191)
6 PLN02927 antheraxanthin epoxid 99.1 2.5E-10 5.5E-15 120.5 9.1 85 23-114 549-645 (668)
7 COG3456 Predicted component of 99.0 6.3E-10 1.4E-14 111.6 7.6 88 21-115 19-106 (430)
8 smart00240 FHA Forkhead associ 98.9 2.4E-09 5.2E-14 75.6 5.2 51 30-87 1-52 (52)
9 COG5025 Transcription factor o 97.8 1.2E-05 2.6E-10 84.7 3.0 111 9-120 70-195 (610)
10 KOG1882 Transcriptional regula 97.7 4.2E-05 9E-10 73.2 5.2 70 29-105 195-276 (293)
11 KOG0245 Kinesin-like protein [ 97.6 0.00014 3E-09 80.2 8.2 87 22-115 471-558 (1221)
12 KOG1881 Anion exchanger adapto 97.6 4.7E-05 1E-09 81.2 3.8 82 28-117 177-268 (793)
13 KOG1880 Nuclear inhibitor of p 97.0 0.00085 1.8E-08 65.9 4.4 77 23-106 33-110 (337)
14 TIGR01663 PNK-3'Pase polynucle 96.7 0.0036 7.9E-08 65.3 6.6 77 20-106 24-100 (526)
15 TIGR02500 type_III_yscD type I 96.3 0.027 5.9E-07 56.6 10.3 93 13-118 3-100 (410)
16 KOG0615 Serine/threonine prote 96.1 0.0079 1.7E-07 61.7 5.0 83 23-106 59-147 (475)
17 KOG1892 Actin filament-binding 91.9 0.5 1.1E-05 53.2 7.7 87 21-117 371-459 (1629)
18 KOG0241 Kinesin-like protein [ 88.9 0.74 1.6E-05 51.9 5.9 84 21-116 461-545 (1714)
19 PF12872 OST-HTH: OST-HTH/LOTU 76.4 20 0.00043 26.8 7.6 66 237-320 5-70 (74)
20 PRK11507 ribosome-associated p 67.1 13 0.00027 29.7 4.7 32 78-111 37-68 (70)
21 PF13275 S4_2: S4 domain; PDB: 66.6 4.6 9.9E-05 31.6 2.1 32 78-111 33-64 (65)
22 KOG2294 Transcription factor o 66.3 10 0.00022 37.8 5.0 93 21-113 60-162 (454)
23 smart00363 S4 S4 RNA-binding d 65.4 11 0.00023 25.6 3.7 27 77-106 25-52 (60)
24 PRK01777 hypothetical protein; 64.7 7.6 0.00017 32.2 3.3 29 74-105 46-74 (95)
25 COG2501 S4-like RNA binding pr 64.6 14 0.0003 29.7 4.5 34 77-112 36-69 (73)
26 TIGR02988 YaaA_near_RecF S4 do 61.8 11 0.00024 27.8 3.3 26 77-104 33-58 (59)
27 PF04710 Pellino: Pellino; In 60.3 21 0.00046 36.9 6.1 20 95-114 235-254 (416)
28 PF01479 S4: S4 domain; Inter 54.5 12 0.00027 26.0 2.5 23 77-102 25-48 (48)
29 PF14478 DUF4430: Domain of un 52.3 15 0.00033 27.8 2.8 25 80-104 43-67 (68)
30 cd00165 S4 S4/Hsp/ tRNA synthe 47.5 27 0.00058 24.3 3.3 27 77-106 25-52 (70)
31 COG5131 URM1 Ubiquitin-like pr 42.8 19 0.00042 30.2 2.2 44 61-105 42-90 (96)
32 PF02824 TGS: TGS domain; Int 41.0 23 0.0005 26.5 2.2 23 79-104 36-58 (60)
33 PF14451 Ub-Mut7C: Mut7-C ubiq 40.9 32 0.00068 27.7 3.1 24 79-105 51-74 (81)
34 cd00754 MoaD Ubiquitin domain 39.9 33 0.00072 25.9 3.0 23 79-104 51-73 (80)
35 PRK06437 hypothetical protein; 36.6 47 0.001 25.4 3.3 23 79-104 38-60 (67)
36 PRK15367 type III secretion sy 36.3 1.5E+02 0.0032 30.8 7.8 83 21-119 17-99 (395)
37 cd00565 ThiS ThiaminS ubiquiti 35.4 40 0.00087 25.1 2.8 26 79-104 32-58 (65)
38 KOG4236 Serine/threonine prote 34.5 31 0.00068 37.7 2.8 66 202-268 574-652 (888)
39 TIGR01687 moaD_arch MoaD famil 34.5 47 0.001 25.9 3.2 25 79-104 57-81 (88)
40 TIGR01683 thiS thiamine biosyn 34.2 49 0.0011 24.6 3.1 25 80-104 32-57 (64)
41 PRK06944 sulfur carrier protei 34.1 47 0.001 24.5 2.9 25 80-104 33-58 (65)
42 PF09269 DUF1967: Domain of un 33.6 36 0.00078 26.4 2.3 16 96-111 54-69 (69)
43 TIGR03595 Obg_CgtA_exten Obg f 29.9 42 0.00092 26.1 2.2 16 96-111 54-69 (69)
44 PF02597 ThiS: ThiS family; I 27.9 39 0.00085 25.2 1.6 27 78-104 44-70 (77)
45 cd01666 TGS_DRG_C TGS_DRG_C: 26.6 53 0.0012 26.0 2.2 21 81-104 53-73 (75)
46 KOG1098 Putative SAM-dependent 26.0 20 0.00043 39.4 -0.4 38 222-259 24-62 (780)
47 cd01764 Urm1 Urm1-like ubuitin 25.8 65 0.0014 26.3 2.7 24 80-104 62-87 (94)
48 PRK07696 sulfur carrier protei 24.9 79 0.0017 24.1 2.8 25 80-104 35-60 (67)
49 PRK08364 sulfur carrier protei 24.9 85 0.0018 24.0 3.0 22 80-104 42-63 (70)
50 PRK06488 sulfur carrier protei 24.8 80 0.0017 23.5 2.8 25 80-104 33-58 (65)
51 PRK05659 sulfur carrier protei 24.1 72 0.0016 23.6 2.4 25 80-104 34-59 (66)
52 PRK11092 bifunctional (p)ppGpp 24.0 66 0.0014 35.4 3.0 25 78-105 422-446 (702)
53 PF02626 AHS2: Allophanate hyd 23.9 1.1E+02 0.0024 29.7 4.3 43 72-115 48-95 (271)
54 smart00797 AHS2 Allophanate hy 23.3 1.9E+02 0.0042 28.3 5.8 51 59-113 38-93 (280)
55 TIGR01682 moaD molybdopterin c 23.1 93 0.002 23.9 3.0 23 79-104 51-73 (80)
56 PRK05863 sulfur carrier protei 22.5 52 0.0011 24.8 1.4 25 80-104 34-58 (65)
57 PRK07440 hypothetical protein; 22.3 92 0.002 24.0 2.8 25 80-104 38-63 (70)
58 PLN02799 Molybdopterin synthas 22.2 1E+02 0.0022 23.8 3.1 22 80-104 54-75 (82)
59 COG1188 Ribosome-associated he 21.9 1.1E+02 0.0024 26.0 3.4 23 80-105 36-58 (100)
60 PF13325 MCRS_N: N-terminal re 21.3 52 0.0011 31.0 1.4 48 228-284 73-120 (199)
61 PHA02650 hypothetical protein; 21.1 69 0.0015 26.4 1.9 46 258-303 1-55 (81)
62 COG2028 Uncharacterized conser 20.9 20 0.00043 31.8 -1.3 46 264-309 69-118 (145)
No 1
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.57 E-value=7.4e-15 Score=109.63 Aligned_cols=67 Identities=40% Similarity=0.672 Sum_probs=56.3
Q ss_pred EEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 30 IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 30 IvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
++|||++. +||.| +++.|||+||+|.++. ++.|+|+++ |+|||||||+++.++. +++|++||+|+||
T Consensus 1 ~~iGR~~~---~di~l----~~~~iSr~Ha~i~~~~-~~~~~i~d~~s~ngt~vng~~l~~~~-~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD---CDIVL----PDPSISRRHARISFDD-DGQFYIEDLGSTNGTFVNGQRLGPGE-PVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT---SSEEE----TSTTSSTTSEEEEEET-TEEEEEEESSSSS-EEETTEEESSTS-EEEE-TTEEEEET
T ss_pred CEEcCCCC---CCEEE----CCHheeeeeeEEEEec-eeeEEEEeCCCCCcEEECCEEcCCCC-EEECCCCCEEEcC
Confidence 58999965 56777 4789999999999985 349999998 5999999999999865 7999999999998
No 2
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=99.56 E-value=4.8e-15 Score=150.67 Aligned_cols=105 Identities=30% Similarity=0.392 Sum_probs=99.5
Q ss_pred eEEEEeccceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCC
Q 019952 12 GFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGN 91 (333)
Q Consensus 12 a~AkL~G~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs 91 (333)
|||+|.|+...|+|++++|+|||++....|||||+..|+...|||++|.|... +++.|.|.++||..++|||..+.+|+
T Consensus 432 AiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~-n~GsF~IkNlGK~~I~vng~~l~~gq 510 (547)
T KOG2293|consen 432 AIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLK-NDGSFFIKNLGKRSILVNGGELDRGQ 510 (547)
T ss_pred eeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEec-cCCcEEeccCcceeEEeCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999997 47999999999999999999999998
Q ss_pred CCeecCCCCEEEeCCeEEEEEeccccc
Q 019952 92 PPVKLDSQDLLQIGDKEFYFLLPVRSI 118 (333)
Q Consensus 92 ~P~~L~sGDlIqIG~t~f~Fllp~~si 118 (333)
.+.|+++++|+|.+.+|.|.+....+
T Consensus 511 -~~~L~~nclveIrg~~FiF~~N~~~v 536 (547)
T KOG2293|consen 511 -KVILKNNCLVEIRGLRFIFEINQEAV 536 (547)
T ss_pred -eEEeccCcEEEEccceEEEeecHHHH
Confidence 59999999999999999999876654
No 3
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.53 E-value=2.1e-13 Score=106.32 Aligned_cols=88 Identities=31% Similarity=0.548 Sum_probs=72.2
Q ss_pred cceEEEeec-CeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 019952 19 EDFEYYMQT-YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (333)
Q Consensus 19 ~~~ey~L~~-~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~ 97 (333)
....|.|.. ..++|||+..+ +++.+ .++.|||+||+|.++.+++.|++++.|+||++|||+++.++. ++.|.
T Consensus 12 ~~~~~~l~~~~~~~iGr~~~~--~~i~l----~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~~-~~~l~ 84 (102)
T cd00060 12 SGRRYYLDPGGTYTIGRDSDN--CDIVL----DDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGE-PVRLR 84 (102)
T ss_pred ceeEEEECCCCeEEECcCCCc--CCEEc----CCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCCC-cEECC
Confidence 467799998 99999999985 46766 489999999999998544566667788999999999998755 69999
Q ss_pred CCCEEEeCCeEEEEEe
Q 019952 98 SQDLLQIGDKEFYFLL 113 (333)
Q Consensus 98 sGDlIqIG~t~f~Fll 113 (333)
+||.|+||...+.|.+
T Consensus 85 ~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 85 DGDVIRLGNTSISFRF 100 (102)
T ss_pred CCCEEEECCeEEEEEE
Confidence 9999999954444443
No 4
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.34 E-value=4e-12 Score=126.61 Aligned_cols=90 Identities=32% Similarity=0.409 Sum_probs=74.9
Q ss_pred ccceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEc--CEEeCCCCCCee
Q 019952 18 GEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVE--GVLHLPGNPPVK 95 (333)
Q Consensus 18 G~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVN--G~~I~pGs~P~~ 95 (333)
|....|.+....++|||+.++ ++.|. +....|||+||+|.++ ++.|+|.++|+|||||| |.++.++. +++
T Consensus 14 g~~~~~~f~~~~~~IGR~~~~---d~~l~--d~~~~VS~~Ha~I~~~--~g~~~l~DlStNGT~VN~sg~~l~~~~-~~~ 85 (396)
T TIGR03354 14 GIAAQKTFGTNGGTIGRSEDC---DWVLP--DPERHVSGRHARIRYR--DGAYLLTDLSTNGVFLNGSGSPLGRGN-PVR 85 (396)
T ss_pred CcceEEEECCCCEEEecCCCC---CEEeC--CCCCCcchhhcEEEEE--CCEEEEEECCCCCeEECCCCCCCCCCC-ceE
Confidence 344578888999999999974 44441 1334599999999997 47999999999999999 89998765 699
Q ss_pred cCCCCEEEeCCeEEEEEecc
Q 019952 96 LDSQDLLQIGDKEFYFLLPV 115 (333)
Q Consensus 96 L~sGDlIqIG~t~f~Fllp~ 115 (333)
|.+||+|+||.+.++|.+..
T Consensus 86 L~~GD~I~iG~~~lrv~~~~ 105 (396)
T TIGR03354 86 LEQGDRLRLGDYEIRVSLGD 105 (396)
T ss_pred cCCCCEEEECCEEEEEEeCC
Confidence 99999999999999999853
No 5
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.18 E-value=2.8e-10 Score=99.31 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=64.5
Q ss_pred EEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeecCCCCE
Q 019952 23 YYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQDL 101 (333)
Q Consensus 23 y~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L~sGDl 101 (333)
+......++|||..++ ++-+ ++..|||+||.|.++. +.|+++++ |+|||||||.++.+ .+.|++||.
T Consensus 84 ~~~~~~~~tigr~~~~---~i~~----~~~~vSR~Ha~l~~~~--~~~~~~d~~S~nGt~vn~~~v~~---~~~l~~gd~ 151 (191)
T COG1716 84 IVLGEPVTTIGRDPDN---DIVL----DDDVVSRRHAELRREG--NEVFLEDLGSTNGTYVNGEKVRQ---RVLLQDGDV 151 (191)
T ss_pred cccccceEEeccCCCC---CEEc----CCCccccceEEEEEeC--CceEEEECCCCcceEECCeEccC---cEEcCCCCE
Confidence 4444558999996654 4554 6799999999999984 67777776 59999999999975 489999999
Q ss_pred EEeCCeEE-EEEeccc
Q 019952 102 LQIGDKEF-YFLLPVR 116 (333)
Q Consensus 102 IqIG~t~f-~Fllp~~ 116 (333)
|+||...+ .++..-.
T Consensus 152 i~i~~~~~~~~~~~~~ 167 (191)
T COG1716 152 IRLGGTLAERLRIILT 167 (191)
T ss_pred EEECccceeeEeeccc
Confidence 99999888 5544333
No 6
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.09 E-value=2.5e-10 Score=120.46 Aligned_cols=85 Identities=21% Similarity=0.417 Sum_probs=66.6
Q ss_pred EEe---ecCeEEECCCCCCCC--eeeecCCCCCCCcccccceEEEEecCCCcEEEEeCC-CCceEEcCEE---e--CCCC
Q 019952 23 YYM---QTYSIILGRNSKKST--VDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVL---H--LPGN 91 (333)
Q Consensus 23 y~L---~~~sIvIGRss~~~~--VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLS-kNGTfVNG~~---I--~pGs 91 (333)
+.| ++...+|||.+.++. .-|.| +++.||++||+|.+. ++.|+|+||+ +|||||||+. + .|+.
T Consensus 549 ~~l~~~~~~p~~iG~~~~~~~~~~~i~i----~~~~vS~~Ha~i~~~--~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~ 622 (668)
T PLN02927 549 LCLTKDEDQPCIVGSEPDQDFPGMRIVI----PSSQVSKMHARVIYK--DGAFFLMDLRSEHGTYVTDNEGRRYRATPNF 622 (668)
T ss_pred eeeecCCCCCeEecCCCCcCCCCceEEe----cCCccChhHeEEEEE--CCEEEEEECCCCCccEEeCCCCceEecCCCC
Confidence 777 778999999998642 11234 579999999999997 6899999985 8999997765 4 4554
Q ss_pred CCeecCCCCEEEeCCe-EEEEEec
Q 019952 92 PPVKLDSQDLLQIGDK-EFYFLLP 114 (333)
Q Consensus 92 ~P~~L~sGDlIqIG~t-~f~Fllp 114 (333)
|++|++||+|+||+- +..|++.
T Consensus 623 -~~~l~~~d~I~~g~~~~~~fr~~ 645 (668)
T PLN02927 623 -PARFRSSDIIEFGSDKKAAFRVK 645 (668)
T ss_pred -ceEeCCCCEEEeCCCcceeEEEE
Confidence 799999999999983 3555543
No 7
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.01 E-value=6.3e-10 Score=111.57 Aligned_cols=88 Identities=20% Similarity=0.239 Sum_probs=74.5
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGD 100 (333)
.++.+++...+|||+++|+.. |+ +....||+.||+|.|+ ++.|+|.+.|.||+||||-.+..|..-++|+.||
T Consensus 19 aq~~f~~~~g~IGrs~dcdW~-i~----D~~~~VS~~Hc~I~~~--dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd 91 (430)
T COG3456 19 AQKLFDRGGGVIGRSPDCDWQ-ID----DPERFVSKQHCTISYR--DGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQGD 91 (430)
T ss_pred hhhhhhcCCcccccCCCCCcc-cc----CcccccchhheEEEec--CCeEEEEecCCCceeecccccCCCCCccccccCC
Confidence 456777778899999987533 33 3689999999999997 5899999999889999999887775338999999
Q ss_pred EEEeCCeEEEEEecc
Q 019952 101 LLQIGDKEFYFLLPV 115 (333)
Q Consensus 101 lIqIG~t~f~Fllp~ 115 (333)
.|.||++.|.+.+..
T Consensus 92 ~i~iG~y~i~V~l~~ 106 (430)
T COG3456 92 EILIGRYIIRVHLSR 106 (430)
T ss_pred EEeeccEEEEEEecc
Confidence 999999999999964
No 8
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.90 E-value=2.4e-09 Score=75.61 Aligned_cols=51 Identities=47% Similarity=0.703 Sum_probs=41.2
Q ss_pred EEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCC-CCceEEcCEEe
Q 019952 30 IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVLH 87 (333)
Q Consensus 30 IvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLS-kNGTfVNG~~I 87 (333)
++|||.++. +++.+ ++..|||.||+|.++. ++.|+|.+++ +|||||||+++
T Consensus 1 ~~iGr~~~~--~~i~~----~~~~vs~~H~~i~~~~-~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSED--CDIQL----PGPSISRRHAEIVYDG-GGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCC--CCEEe----CCCCcchhHcEEEECC-CCeEEEEECCCCCCeeECCEEC
Confidence 479999942 45555 4678999999999985 3469999997 99999999875
No 9
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=97.79 E-value=1.2e-05 Score=84.67 Aligned_cols=111 Identities=26% Similarity=0.330 Sum_probs=93.7
Q ss_pred ccceEEEEeccceEEEeecCeEEECCCCCCC-------------CeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC
Q 019952 9 VEAGFAKLQGEDFEYYMQTYSIILGRNSKKS-------------TVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL 75 (333)
Q Consensus 9 ~~~a~AkL~G~~~ey~L~~~sIvIGRss~~~-------------~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL 75 (333)
...+||+|.|..|.|+....++.+||..+.. +..++. .++..+.++|.|+.|.+|-.-+.|.+.+.
T Consensus 70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~-~~~~~k~~~~~~~sIr~Nls~~~a~~~i~ 148 (610)
T COG5025 70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNT-FFYYAKVVSRWQNSIRHNLSLNDAFIKIE 148 (610)
T ss_pred HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeec-ccccccccchhhhhhhcccccCceEEEEe
Confidence 6789999999999999999999999965521 112222 35789999999999999988889999999
Q ss_pred CCCceEEcCEEe--CCCCCCeecCCCCEEEeCCeEEEEEeccccccC
Q 019952 76 GKNGCFVEGVLH--LPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILG 120 (333)
Q Consensus 76 SkNGTfVNG~~I--~pGs~P~~L~sGDlIqIG~t~f~Fllp~~si~~ 120 (333)
++||..|+|.+. .|+..+..|+.|.+++++.+.+.|.+|......
T Consensus 149 g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~~~~~~ 195 (610)
T COG5025 149 GRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPSSTEIK 195 (610)
T ss_pred ccCCccccceeeccCCCccceeeccccccccccccccccCcccccee
Confidence 999999999965 566667899999999999999999998776544
No 10
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=97.73 E-value=4.2e-05 Score=73.16 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=51.4
Q ss_pred eEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC----C-------cEEEEeC-CCCceEEcCEEeCCCCCCeec
Q 019952 29 SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR----R-------RFALEVL-GKNGCFVEGVLHLPGNPPVKL 96 (333)
Q Consensus 29 sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~----~-------~F~LedL-SkNGTfVNG~~I~pGs~P~~L 96 (333)
-+++||.-. ..||-+ +.+.-|.+||+|.|..-. + .-||.|| |.||||||.+.|.+.. =+.|
T Consensus 195 ~yL~gRerk--IaDi~i----dhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqR-YyEL 267 (293)
T KOG1882|consen 195 CYLDGRERK--IADIPI----DHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQR-YYEL 267 (293)
T ss_pred eeecCceee--eeccCC----CCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchh-eeee
Confidence 456788432 345544 788999999999985311 1 2345555 5899999999998743 4799
Q ss_pred CCCCEEEeC
Q 019952 97 DSQDLLQIG 105 (333)
Q Consensus 97 ~sGDlIqIG 105 (333)
..+|+|.||
T Consensus 268 ~ekDvlkfg 276 (293)
T KOG1882|consen 268 REKDVLKFG 276 (293)
T ss_pred ecCceeeec
Confidence 999999999
No 11
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.64 E-value=0.00014 Score=80.17 Aligned_cols=87 Identities=29% Similarity=0.384 Sum_probs=70.7
Q ss_pred EEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCCE
Q 019952 22 EYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDL 101 (333)
Q Consensus 22 ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGDl 101 (333)
-|+|....++|||.+.++..||.|+ ...|--+||.|.-+..++...|..-..--|||||++|. +|..|.+||+
T Consensus 471 lY~ikeG~TrVG~~~a~~~~DI~Ls----G~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v~---ep~qL~~GdR 543 (1221)
T KOG0245|consen 471 LYYIKEGETRVGREDASSRQDIVLS----GQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLVT---EPTQLRSGDR 543 (1221)
T ss_pred EEEeccCceecCCCCcccCCceEec----chhhhhhceEEEecCCCceEEeccCCccceeEccEEcC---CcceeccCCE
Confidence 4999999999999999888999995 66899999999987543436666655567999999996 3789999999
Q ss_pred EEeCC-eEEEEEecc
Q 019952 102 LQIGD-KEFYFLLPV 115 (333)
Q Consensus 102 IqIG~-t~f~Fllp~ 115 (333)
|-||+ ..|+|.-|.
T Consensus 544 iilG~~H~frfn~P~ 558 (1221)
T KOG0245|consen 544 IILGGNHVFRFNHPE 558 (1221)
T ss_pred EEEcCceeEEecCHH
Confidence 99996 466665443
No 12
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.59 E-value=4.7e-05 Score=81.24 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=66.4
Q ss_pred CeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCc---------EEEEeCC-CCceEEcCEEeCCCCCCeecC
Q 019952 28 YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRR---------FALEVLG-KNGCFVEGVLHLPGNPPVKLD 97 (333)
Q Consensus 28 ~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~---------F~LedLS-kNGTfVNG~~I~pGs~P~~L~ 97 (333)
...+|||-+. ||+-+ ..+.|||.||.|.|-..+-. |+|.++| +.|||+|-.++.|-. -+.+.
T Consensus 177 ~~~~fgr~~~---cD~~~----eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~-yir~~ 248 (793)
T KOG1881|consen 177 AACLFGRLGG---CDVAL----EHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKV-YIRDR 248 (793)
T ss_pred eeEEecccCC---Ccccc----ccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcc-hhhhh
Confidence 4678999985 46655 57899999999999654444 9999886 889999999997743 46899
Q ss_pred CCCEEEeCCeEEEEEecccc
Q 019952 98 SQDLLQIGDKEFYFLLPVRS 117 (333)
Q Consensus 98 sGDlIqIG~t~f~Fllp~~s 117 (333)
-|++++||+..+.|.+....
T Consensus 249 Vg~v~~fggsTrl~i~Qgp~ 268 (793)
T KOG1881|consen 249 VGHVARFGGSTRLYIFQGPE 268 (793)
T ss_pred HHHHHHhcCceEEEEeeCCC
Confidence 99999999988888776554
No 13
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=96.95 E-value=0.00085 Score=65.90 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=60.8
Q ss_pred EEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCC-CCceEEcCEEeCCCCCCeecCCCCE
Q 019952 23 YYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVLHLPGNPPVKLDSQDL 101 (333)
Q Consensus 23 y~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLS-kNGTfVNG~~I~pGs~P~~L~sGDl 101 (333)
..++++..++||+.+.+.++|| ....||.||-+.|-.....++|.+++ +.|||+-..++.+.. |+.|+-|..
T Consensus 33 ~iddkr~y~Fgrn~q~~df~id------h~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~-p~~l~i~~~ 105 (337)
T KOG1880|consen 33 IIDDKRRYLFGRNHQTCDFVID------HASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHK-PVQLEIGST 105 (337)
T ss_pred HhhhhhhhhhccCCCccceEee------cchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCC-CccccCCce
Confidence 4456667789999986545544 57999999999987655557777775 669999999998875 899999999
Q ss_pred EEeCC
Q 019952 102 LQIGD 106 (333)
Q Consensus 102 IqIG~ 106 (333)
+.||-
T Consensus 106 ~~fga 110 (337)
T KOG1880|consen 106 FHFGA 110 (337)
T ss_pred EEEec
Confidence 99884
No 14
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.65 E-value=0.0036 Score=65.32 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=65.4
Q ss_pred ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCC
Q 019952 20 DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQ 99 (333)
Q Consensus 20 ~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sG 99 (333)
...+.|....++|||++.. -| .++.-||++.++..|-+.+.-.+..||.|.+-|||+.+.++. .+.|++|
T Consensus 24 ~~~~~~~~~~~~~gr~pet---~i------~d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~-~~~l~~g 93 (526)
T TIGR01663 24 HHFIHLDAGALFLGRGPET---GI------RDRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGG-EGELGHG 93 (526)
T ss_pred CCeeccCCCceEEccCccc---cc------chhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCC-eeeecCC
Confidence 3557777888999999974 33 367899999999999876666778999999999999999987 4999999
Q ss_pred CEEEeCC
Q 019952 100 DLLQIGD 106 (333)
Q Consensus 100 DlIqIG~ 106 (333)
|++.|=+
T Consensus 94 ~~l~~v~ 100 (526)
T TIGR01663 94 DLLEIVN 100 (526)
T ss_pred CEEEEec
Confidence 9999975
No 15
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=96.32 E-value=0.027 Score=56.63 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred EEEEeccc--eEEEeecCeEEEC-CCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcC--EEe
Q 019952 13 FAKLQGED--FEYYMQTYSIILG-RNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEG--VLH 87 (333)
Q Consensus 13 ~AkL~G~~--~ey~L~~~sIvIG-Rss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG--~~I 87 (333)
+-+|.|.. .++.+....++|| +..+ +||.| .+..|||+|++|..+. ..+.+.+ +.+++.+|| ...
T Consensus 3 lrvl~G~~~G~~~~L~~g~~~iG~~~~~---~di~L----~d~~~~~~h~~l~v~~--~~~~l~~-~~~~~~~~g~~~~~ 72 (410)
T TIGR02500 3 LRVLSGPHRGAELPLPEGNLVLGTDAAD---CDIVL----SDGGIAAVHVSLHVRL--EGVTLAG-AVEPAWEEGGVLPD 72 (410)
T ss_pred EEEecCCCCCcEEECCCCceEeccCCCC---cEEEe----CCCCccchheEEEEcC--ceEEEec-CCcceeECCccccc
Confidence 34566664 5799999999999 8865 67877 6899999999999974 4555553 356799999 555
Q ss_pred CCCCCCeecCCCCEEEeCCeEEEEEeccccc
Q 019952 88 LPGNPPVKLDSQDLLQIGDKEFYFLLPVRSI 118 (333)
Q Consensus 88 ~pGs~P~~L~sGDlIqIG~t~f~Fllp~~si 118 (333)
..+ ..|..+-.|++|...|.|--..+..
T Consensus 73 ~~g---~~l~~~~~l~~g~~~~~~g~~~~~l 100 (410)
T TIGR02500 73 EEG---TPLPSGTPLLVAGVAFALGEVDDAL 100 (410)
T ss_pred CCC---CccCCCCceecceeEEeccCCcccC
Confidence 444 5799999999999999985544443
No 16
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=0.0079 Score=61.69 Aligned_cols=83 Identities=23% Similarity=0.129 Sum_probs=54.2
Q ss_pred EEeecCeEEECCCCCCCCeeeec--CC----CCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeec
Q 019952 23 YYMQTYSIILGRNSKKSTVDVDL--SS----LGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKL 96 (333)
Q Consensus 23 y~L~~~sIvIGRss~~~~VDIDL--s~----lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L 96 (333)
.-+-...+++||+..++-+.... +. +.--..+|-.|-++..+...+.+++++.|+||||||...+..+. ...|
T Consensus 59 ~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~VN~e~i~k~~-~r~l 137 (475)
T KOG0615|consen 59 IDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFVNDEMIGKGL-SRIL 137 (475)
T ss_pred ceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccccHhHhhccc-cccc
Confidence 44455688999997643221110 00 00011344444444444456789999999999999999887765 4689
Q ss_pred CCCCEEEeCC
Q 019952 97 DSQDLLQIGD 106 (333)
Q Consensus 97 ~sGDlIqIG~ 106 (333)
+++|.|.|+-
T Consensus 138 kN~dei~is~ 147 (475)
T KOG0615|consen 138 KNGDEISISI 147 (475)
T ss_pred cCCCEEEecc
Confidence 9999999984
No 17
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=91.88 E-value=0.5 Score=53.21 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=67.1
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCC-ceEEcCEEeCCCCCCeecCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKN-GCFVEGVLHLPGNPPVKLDSQ 99 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkN-GTfVNG~~I~pGs~P~~L~sG 99 (333)
.+|.|....+-+|-..-++ -.|-| ..+.|-.+||-|.+- .+...++..++. =|||||.+|.. +.-|++|
T Consensus 371 ~ri~L~~~vtEVGs~~~~~-~~iqL----fGP~IqprHc~it~m--eGVvTvTP~~~DA~t~VnGh~isq---ttiL~~G 440 (1629)
T KOG1892|consen 371 KRIRLQLSVTEVGSEKLDD-NSIQL----FGPGIQPRHCDITNM--EGVVTVTPRSMDAETYVNGHRISQ---TTILQSG 440 (1629)
T ss_pred eeEEeccCceeccccccCC-cceee----eCCCCCccccchhhc--cceEEecccccchhhhccceecch---hhhhccC
Confidence 5688888788888765532 23444 568899999999875 477788888865 59999999964 6789999
Q ss_pred CEEEeCC-eEEEEEecccc
Q 019952 100 DLLQIGD-KEFYFLLPVRS 117 (333)
Q Consensus 100 DlIqIG~-t~f~Fllp~~s 117 (333)
+.|+||. ..|+|.-+...
T Consensus 441 ~~v~fGa~hsfkF~dss~d 459 (1629)
T KOG1892|consen 441 MKVQFGASHSFKFVDSSQD 459 (1629)
T ss_pred CEEEeccceeEEecCCchh
Confidence 9999995 58888766553
No 18
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.94 E-value=0.74 Score=51.92 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=60.7
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGD 100 (333)
..|++... .+||-.. ..+|.|+++ .|-++||+|..+. ++..+++.+..--++|||..+.. +++|.+||
T Consensus 461 lvyyl~~~-tlig~~~---~~~i~l~gl----gi~p~h~vidI~~-dg~l~~~p~~~~R~~VNGs~v~~---~t~L~~Gd 528 (1714)
T KOG0241|consen 461 LVYYLKDH-TLIGLFK---SQDIQLSGL----GIQPKHCVIDIES-DGELRLTPLLNARSCVNGSLVCS---TTQLWHGD 528 (1714)
T ss_pred HHHhhcCc-eeecccc---CcceeeecC----cccCccceeeecc-CCcEEecccccceeeecCceecc---ccccccCc
Confidence 35776654 4788443 367877544 6778999999986 45577776655589999999853 68999999
Q ss_pred EEEeCCeEE-EEEeccc
Q 019952 101 LLQIGDKEF-YFLLPVR 116 (333)
Q Consensus 101 lIqIG~t~f-~Fllp~~ 116 (333)
.|-.|+-.| ++-+|..
T Consensus 529 RiLwGnnHFFrvN~PK~ 545 (1714)
T KOG0241|consen 529 RILWGNNHFFRVNLPKR 545 (1714)
T ss_pred eEEecccceEEecCccc
Confidence 999997544 5555543
No 19
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=76.43 E-value=20 Score=26.84 Aligned_cols=66 Identities=23% Similarity=0.431 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhccCCCCceehhhHHHHHHHHhcCccccccceeecccCCCCCCCCCCCchhHHHHHHhhCCCcEEEEee
Q 019952 237 DVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTR 316 (333)
Q Consensus 237 ~v~s~~~~~lsdlcg~~ew~p~~klh~~l~~~~~~~w~~~~v~~~l~~e~~~~~~~~~~pw~~l~~ll~kypehfvi~~~ 316 (333)
++.+.|-.+|....+-+.||++..|-.++..+| .-.. ++.| . -..|..||++.|+.|.|-.+
T Consensus 5 ~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~---~~~y-----------G---~~~l~~ll~~~~~~~~i~~~ 66 (74)
T PF12872_consen 5 ELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFD---PRDY-----------G---FSSLSELLESLPDVVEIEER 66 (74)
T ss_dssp HHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT-----TCCT-----------T---SSSHHHHHHT-TTTEEEEEE
T ss_pred HHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCC---cccc-----------C---CCcHHHHHHhCCCeEEEeee
Confidence 455556666666666555999999999999998 4333 3333 1 23578888899999999544
Q ss_pred cCCc
Q 019952 317 SKGR 320 (333)
Q Consensus 317 ~~~~ 320 (333)
..|+
T Consensus 67 ~~g~ 70 (74)
T PF12872_consen 67 QHGG 70 (74)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 4444
No 20
>PRK11507 ribosome-associated protein; Provisional
Probab=67.08 E-value=13 Score=29.67 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=25.2
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEE
Q 019952 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYF 111 (333)
Q Consensus 78 NGTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~F 111 (333)
+.+.|||+.-.+- -..|.+||+|+|.+..+.+
T Consensus 37 g~V~VNGeve~rR--gkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETRK--RCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEeccc--CCCCCCCCEEEECCEEEEE
Confidence 4599999865442 2589999999999987765
No 21
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=66.56 E-value=4.6 Score=31.56 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=19.8
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEE
Q 019952 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYF 111 (333)
Q Consensus 78 NGTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~F 111 (333)
+.++|||+.-.+- -..|.+||+|+|++..|.+
T Consensus 33 g~V~VNGe~e~rr--g~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVETRR--GKKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB----S--S----SSEEEEETTEEEEE
T ss_pred CceEECCEEcccc--CCcCCCCCEEEECCEEEEE
Confidence 4689999876543 2589999999999988765
No 22
>KOG2294 consensus Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=66.29 E-value=10 Score=37.85 Aligned_cols=93 Identities=43% Similarity=0.715 Sum_probs=67.0
Q ss_pred eEEEeecCeEEECCCCCCCC------eeeec--CCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCC--
Q 019952 21 FEYYMQTYSIILGRNSKKST------VDVDL--SSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPG-- 90 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~------VDIDL--s~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pG-- 90 (333)
+.++.....+.+||...... .+.+. ..++....+++.|+.+.++.....|.....++|+..++...-..+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~SY~~LI 139 (454)
T KOG2294|consen 60 FTYYVQKLHVILGRPGSSSNSSPSASSGVDVNVQDLGPTKAISRKHAKIFYDLGRQRFSLPVPGKNGAGVKPPYSYSGLI 139 (454)
T ss_pred ceeeccchhhccccccccccccccccccccccccccCCcccccccccccccccccCCccccccccCCCCcCCcccccccc
Confidence 56777888889999533211 11110 124678899999999999876678999999999888887643322
Q ss_pred CCCeecCCCCEEEeCCeEEEEEe
Q 019952 91 NPPVKLDSQDLLQIGDKEFYFLL 113 (333)
Q Consensus 91 s~P~~L~sGDlIqIG~t~f~Fll 113 (333)
...+.+..+..|+|+++-..|..
T Consensus 140 ~mAI~~Sp~krLtLs~Iy~~i~~ 162 (454)
T KOG2294|consen 140 AMAIRLSPGKRLTLGGIYFYILL 162 (454)
T ss_pred ccccccCCCcceeecCeeEEEEe
Confidence 12478899999999998777765
No 23
>smart00363 S4 S4 RNA-binding domain.
Probab=65.37 E-value=11 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCceEEcCEEe-CCCCCCeecCCCCEEEeCC
Q 019952 77 KNGCFVEGVLH-LPGNPPVKLDSQDLLQIGD 106 (333)
Q Consensus 77 kNGTfVNG~~I-~pGs~P~~L~sGDlIqIG~ 106 (333)
.+.++|||+.+ .+. ..|..||.|.+-.
T Consensus 25 ~g~i~vng~~~~~~~---~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTKPS---YIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecCCC---eEeCCCCEEEEcc
Confidence 34699999998 553 5899999988764
No 24
>PRK01777 hypothetical protein; Validated
Probab=64.74 E-value=7.6 Score=32.18 Aligned_cols=29 Identities=21% Similarity=-0.031 Sum_probs=23.3
Q ss_pred eCCCCceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 74 VLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 74 dLSkNGTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
+++.+-+.|||+....+ ..|++||.|+|=
T Consensus 46 ~~~~~~vgI~Gk~v~~d---~~L~dGDRVeIy 74 (95)
T PRK01777 46 DLAKNKVGIYSRPAKLT---DVLRDGDRVEIY 74 (95)
T ss_pred ccccceEEEeCeECCCC---CcCCCCCEEEEe
Confidence 44567789999999764 589999999874
No 25
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=64.63 E-value=14 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=26.8
Q ss_pred CCceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEE
Q 019952 77 KNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFL 112 (333)
Q Consensus 77 kNGTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~Fl 112 (333)
.+-++|||+.-.+- -..|.+||+|.|.+..+...
T Consensus 36 eg~V~vNGe~EtRR--gkKlr~gd~V~i~~~~~~v~ 69 (73)
T COG2501 36 EGEVKVNGEVETRR--GKKLRDGDVVEIPGQRYQVV 69 (73)
T ss_pred CCeEEECCeeeecc--CCEeecCCEEEECCEEEEEE
Confidence 35699999976543 26899999999999877654
No 26
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=61.78 E-value=11 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.0
Q ss_pred CCceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 77 KNGCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 77 kNGTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
...++|||+.+..- .+.|..||.|.|
T Consensus 33 ~G~V~VNg~~~~~~--~~~l~~Gd~v~i 58 (59)
T TIGR02988 33 ENEVLVNGELENRR--GKKLYPGDVIEI 58 (59)
T ss_pred cCCEEECCEEccCC--CCCCCCCCEEEe
Confidence 34599999988432 268999999986
No 27
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=60.33 E-value=21 Score=36.90 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=14.2
Q ss_pred ecCCCCEEEeCCeEEEEEec
Q 019952 95 KLDSQDLLQIGDKEFYFLLP 114 (333)
Q Consensus 95 ~L~sGDlIqIG~t~f~Fllp 114 (333)
.|.+|.+|.+.+..+.++-.
T Consensus 235 iL~DGtLIDLCGaTLlWRsa 254 (416)
T PF04710_consen 235 ILQDGTLIDLCGATLLWRSA 254 (416)
T ss_dssp B--TT-EEE-SSSEEEEEEH
T ss_pred ccccccChhhceeeeEecch
Confidence 59999999999999999854
No 28
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=54.48 E-value=12 Score=25.98 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCceEEcCEEeC-CCCCCeecCCCCEE
Q 019952 77 KNGCFVEGVLHL-PGNPPVKLDSQDLL 102 (333)
Q Consensus 77 kNGTfVNG~~I~-pGs~P~~L~sGDlI 102 (333)
.++++|||+.+. ++ ..++.||+|
T Consensus 25 ~g~V~VNg~~v~~~~---~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGKVVKDPS---YIVKPGDVI 48 (48)
T ss_dssp TTTEEETTEEESSTT---SBESTTEEE
T ss_pred CCEEEECCEEEcCCC---CCCCCcCCC
Confidence 356999999997 43 578899976
No 29
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=52.29 E-value=15 Score=27.85 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=16.2
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
.+|||+....+..-+.|++||.|.+
T Consensus 43 ~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 43 YYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEETTEE-SS-CCC-B--TTEEEEE
T ss_pred EEECCEEhhcCcceeEeCCCCEEEe
Confidence 5789998877666689999999875
No 30
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=47.55 E-value=27 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=21.0
Q ss_pred CCceEEcCEEe-CCCCCCeecCCCCEEEeCC
Q 019952 77 KNGCFVEGVLH-LPGNPPVKLDSQDLLQIGD 106 (333)
Q Consensus 77 kNGTfVNG~~I-~pGs~P~~L~sGDlIqIG~ 106 (333)
.++++|||+.+ .++ ..+..||.|.+..
T Consensus 25 ~g~V~vn~~~~~~~~---~~v~~~d~i~i~~ 52 (70)
T cd00165 25 HGHVLVNGKVVTKPS---YKVKPGDVIEVDG 52 (70)
T ss_pred cCCEEECCEEccCCc---cCcCCCCEEEEcC
Confidence 45799999988 443 5788999888874
No 31
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.85 E-value=19 Score=30.24 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=31.3
Q ss_pred EEEecCCCcEEEEeCC-CCc--eEEcCEE--eCCCCCCeecCCCCEEEeC
Q 019952 61 IFYDFTRRRFALEVLG-KNG--CFVEGVL--HLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 61 I~~d~~~~~F~LedLS-kNG--TfVNG~~--I~pGs~P~~L~sGDlIqIG 105 (333)
+.+.+.+..+++++.. +.| |.||++- +... +.+.|.+||.|.|=
T Consensus 42 ~i~~p~~~sifie~g~lrpGiI~LINd~DWeLlek-e~y~ledgDiIvfi 90 (96)
T COG5131 42 FIYAPTRDSIFIEHGELRPGIICLINDMDWELLEK-ERYPLEDGDIIVFI 90 (96)
T ss_pred HHhCCccceeeecCCCCcccEEEEEcCccHhhhhc-ccccCCCCCEEEEE
Confidence 4566666788888777 677 6779873 3322 24899999999874
No 32
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=41.03 E-value=23 Score=26.46 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=18.3
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
+..|||+++... ++|.++|.|+|
T Consensus 36 ~A~Vng~~vdl~---~~L~~~d~v~i 58 (60)
T PF02824_consen 36 AAKVNGQLVDLD---HPLEDGDVVEI 58 (60)
T ss_dssp EEEETTEEEETT---SBB-SSEEEEE
T ss_pred EEEEcCEECCCC---CCcCCCCEEEE
Confidence 678999998653 68999999987
No 33
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=40.90 E-value=32 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=20.0
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
-++|||+.+..+ +.|++||.|.+-
T Consensus 51 ~i~vNG~~v~~~---~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 51 LILVNGRPVDFD---YRLKDGDRVAVY 74 (81)
T ss_pred EEEECCEECCCc---ccCCCCCEEEEE
Confidence 488999999874 689999988764
No 34
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=39.90 E-value=33 Score=25.86 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=18.3
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-++|||+.+.. ..+|++||.|.|
T Consensus 51 ~v~vNg~~v~~---~~~l~~gD~v~i 73 (80)
T cd00754 51 RIAVNGEYVRL---DTPLKDGDEVAI 73 (80)
T ss_pred EEEECCeEcCC---CcccCCCCEEEE
Confidence 58889998863 268999998876
No 35
>PRK06437 hypothetical protein; Provisional
Probab=36.57 E-value=47 Score=25.43 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=17.4
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
.+.+||+.+.. .+.|++||.|+|
T Consensus 38 aV~vNg~iv~~---~~~L~dgD~Vei 60 (67)
T PRK06437 38 VVIVNGSPVLE---DHNVKKEDDVLI 60 (67)
T ss_pred EEEECCEECCC---ceEcCCCCEEEE
Confidence 35578887763 368999999987
No 36
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=36.28 E-value=1.5e+02 Score=30.80 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=51.2
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGD 100 (333)
.+..+....+++|=.. |||-+ . --...-..+..++ +.-+++ .+.--++|||.++..++ +|.-+-
T Consensus 17 rEl~Lp~G~~tlG~~g----cDi~l-p-----L~~~~~~~L~i~e--~gi~l~-~~~~~vwVnG~~~~~~~---~LPl~q 80 (395)
T PRK15367 17 REVWLNEGNLSLGEKG----CDICI-P-----LTINEKIILREQA--DSLFVD-AGKARVRVNGRRFNPNK---PLPSSG 80 (395)
T ss_pred cEEecCCCceeecCCC----ceEEE-E-----CCCCCEEEEEEcC--CcEEEe-cCCceEEECCEEcCCCC---CCCCcc
Confidence 4567777788999854 45544 1 1112222344442 332232 22235999999997654 588999
Q ss_pred EEEeCCeEEEEEecccccc
Q 019952 101 LLQIGDKEFYFLLPVRSIL 119 (333)
Q Consensus 101 lIqIG~t~f~Fllp~~si~ 119 (333)
.|++++..|.|=-.++.+.
T Consensus 81 ~Ie~aG~~~vlG~~d~~L~ 99 (395)
T PRK15367 81 VLQVAGVAIAFGKQDCELA 99 (395)
T ss_pred hhhhcceEEEecCcccccc
Confidence 9999999999854444443
No 37
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=35.41 E-value=40 Score=25.14 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=18.1
Q ss_pred ceEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
.+.|||+.+.+.. ..+.|++||.|.|
T Consensus 32 ~V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 32 AVALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEE
Confidence 3567888876531 1268999998876
No 38
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=34.52 E-value=31 Score=37.67 Aligned_cols=66 Identities=24% Similarity=0.393 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCCCccCccccchHHHhhhhhhHHHHHHHHHhhccCCCC-------------ceehhhHHHHHHHH
Q 019952 202 SGLTGALIPAEKKGEGRSRVDRESDNQQLLQLEEKDVVSSVATVLSDLCGPGE-------------WMPMEKLYTELVEQ 268 (333)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ee~~v~s~~~~~lsdlcg~~e-------------w~p~~klh~~l~~~ 268 (333)
++-||+.+..-.+.-++--+-+-.|-...--..| +-+..=-++|..||+||- ++-|||||-.|+|-
T Consensus 574 SGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqe-sqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDMLEM 652 (888)
T KOG4236|consen 574 SGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQE-SQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEM 652 (888)
T ss_pred CCcceeeecceecccCceeeeeeeecccCCCchH-HHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchHHHH
Confidence 3445655553333333322223334333222223 344444568999999993 56899999999983
No 39
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=34.50 E-value=47 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=18.6
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-++|||+.+.... ..+|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~-~~~l~dgdev~i 81 (88)
T TIGR01687 57 IILVNGRNVDWGL-GTELKDGDVVAI 81 (88)
T ss_pred EEEECCEecCccC-CCCCCCCCEEEE
Confidence 4788999886543 258999997765
No 40
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=34.24 E-value=49 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=17.5
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+.|||+.+.+.+ ..+.|++||.|+|
T Consensus 32 v~vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 32 VAVNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred EEECCEEcCHHHcCceecCCCCEEEE
Confidence 456888775432 1368999999887
No 41
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=34.07 E-value=47 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=17.3
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+.|||..+.+.. ..+.|++||.|+|
T Consensus 33 v~vN~~~v~~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 33 VAVNGDFVARTQHAARALAAGDRLDL 58 (65)
T ss_pred EEECCEEcCchhcccccCCCCCEEEE
Confidence 567887775421 1357999999887
No 42
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=33.56 E-value=36 Score=26.41 Aligned_cols=16 Identities=38% Similarity=0.655 Sum_probs=11.4
Q ss_pred cCCCCEEEeCCeEEEE
Q 019952 96 LDSQDLLQIGDKEFYF 111 (333)
Q Consensus 96 L~sGDlIqIG~t~f~F 111 (333)
.++||+|.||+..|.|
T Consensus 54 ~~~GD~V~Ig~~eFe~ 69 (69)
T PF09269_consen 54 AKEGDTVRIGDYEFEY 69 (69)
T ss_dssp --TT-EEEETTEEEE-
T ss_pred CCCCCEEEEcCEEEEC
Confidence 6799999999999875
No 43
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=29.93 E-value=42 Score=26.05 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.1
Q ss_pred cCCCCEEEeCCeEEEE
Q 019952 96 LDSQDLLQIGDKEFYF 111 (333)
Q Consensus 96 L~sGDlIqIG~t~f~F 111 (333)
.++||+|.||+..|.|
T Consensus 54 ~~~GD~V~Ig~~eFe~ 69 (69)
T TIGR03595 54 AKDGDTVRIGDFEFEW 69 (69)
T ss_pred CCCCCEEEEccEEEeC
Confidence 6799999999988865
No 44
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=27.88 E-value=39 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=19.0
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 78 NGCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 78 NGTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
--+.|||+.+........|++||.|.|
T Consensus 44 ~~v~vN~~~v~~~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 44 VAVAVNGEIVPDDGLDTPLKDGDEVAI 70 (77)
T ss_dssp EEEEETTEEEGGGTTTSBEETTEEEEE
T ss_pred EEEEECCEEcCCccCCcCcCCCCEEEE
Confidence 357889998876111268999998875
No 45
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=26.61 E-value=53 Score=26.04 Aligned_cols=21 Identities=19% Similarity=0.022 Sum_probs=16.9
Q ss_pred EEcCEEeCCCCCCeecCCCCEEEe
Q 019952 81 FVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 81 fVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-++|+++..+ ++|++||+|+|
T Consensus 53 ~~~gq~Vgl~---~~L~d~DvVeI 73 (75)
T cd01666 53 KHSPQRVGLD---HVLEDEDVVQI 73 (75)
T ss_pred cCCCeECCCC---CEecCCCEEEE
Confidence 3578888653 69999999997
No 46
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=26.02 E-value=20 Score=39.40 Aligned_cols=38 Identities=37% Similarity=0.621 Sum_probs=29.3
Q ss_pred CccccchHHHhhhhhhHHHHHHHHHhhcc-CCCCceehh
Q 019952 222 DRESDNQQLLQLEEKDVVSSVATVLSDLC-GPGEWMPME 259 (333)
Q Consensus 222 ~~~~d~~~~~~~ee~~v~s~~~~~lsdlc-g~~ew~p~~ 259 (333)
+|----..|+|+..+.=.=-=|.++-||| -||-||-+.
T Consensus 24 yrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA 62 (780)
T KOG1098|consen 24 YRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVA 62 (780)
T ss_pred hhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHH
Confidence 33334478999999996666688999999 899998553
No 47
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=25.83 E-value=65 Score=26.33 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=18.0
Q ss_pred eEEcCEEeC--CCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHL--PGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~--pGs~P~~L~sGDlIqI 104 (333)
++|||..+. .+. .++|++||.|.|
T Consensus 62 VlvN~~di~~l~g~-~t~L~dgD~v~i 87 (94)
T cd01764 62 VLINDTDWELLGEE-DYILEDGDHVVF 87 (94)
T ss_pred EEECCccccccCCc-ccCCCCcCEEEE
Confidence 788998764 233 478999998876
No 48
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.95 E-value=79 Score=24.13 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=17.9
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+-+|++.+.+.. ..+.|++||.|+|
T Consensus 35 v~vN~~iv~r~~w~~~~L~~gD~iEI 60 (67)
T PRK07696 35 VERNKDILQKDDHTDTSVFDGDQIEI 60 (67)
T ss_pred EEECCEEeCHHHcCceecCCCCEEEE
Confidence 456888776532 2368999999987
No 49
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=24.86 E-value=85 Score=24.00 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=16.3
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
+.+||+.+... +.|++||.|+|
T Consensus 42 v~vNg~iv~~~---~~l~~gD~Vei 63 (70)
T PRK08364 42 AKVNGKVALED---DPVKDGDYVEV 63 (70)
T ss_pred EEECCEECCCC---cCcCCCCEEEE
Confidence 44688877542 57999998876
No 50
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.79 E-value=80 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=17.7
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+-||++.+.+.. ..+.|++||.|+|
T Consensus 33 vavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 33 TAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred EEECCEEcCHHHcCccccCCCCEEEE
Confidence 567888776521 1268999999987
No 51
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.07 E-value=72 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=16.0
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+.|||+.+.+.. ..+.|++||.|+|
T Consensus 34 v~vNg~iv~r~~~~~~~l~~gD~vei 59 (66)
T PRK05659 34 VEVNGEIVPRSQHASTALREGDVVEI 59 (66)
T ss_pred EEECCeEeCHHHcCcccCCCCCEEEE
Confidence 445665554321 1368999999987
No 52
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=24.00 E-value=66 Score=35.41 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=21.1
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 78 NGTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
-|..|||+.+... ++|++||+|+|=
T Consensus 422 ~gAkVNg~~vpL~---~~L~~Gd~VeIi 446 (702)
T PRK11092 422 VGARVDRQPYPLS---QPLTSGQTVEII 446 (702)
T ss_pred EEEEECCEECCCC---ccCCCCCEEEEE
Confidence 4999999988653 689999999885
No 53
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=23.87 E-value=1.1e+02 Score=29.68 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=28.7
Q ss_pred EEeCCCC-ceEEcCEEeCCCCCCeecCCCCEEEeCC----eEEEEEecc
Q 019952 72 LEVLGKN-GCFVEGVLHLPGNPPVKLDSQDLLQIGD----KEFYFLLPV 115 (333)
Q Consensus 72 LedLSkN-GTfVNG~~I~pGs~P~~L~sGDlIqIG~----t~f~Fllp~ 115 (333)
|-+-|.+ ...|||+++.... ++.++.||+|+|+. .+-|+-+..
T Consensus 48 ialtGa~~~~~lng~~~~~~~-~~~v~~Gd~L~~~~~~~G~r~YLAv~G 95 (271)
T PF02626_consen 48 IALTGADFEATLNGKPVPMWQ-PFLVKAGDVLKFGPPRSGARAYLAVAG 95 (271)
T ss_dssp EEEEESCEEEEETTEEE-TTS-EEEE-TT-EEEEEEESSECEEEEEETT
T ss_pred EEEECCCCceEECCEEccCCE-EEEECCCCEEEecCCCCccEEEEEecc
Confidence 4444443 6899999998876 79999999999994 455554443
No 54
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=23.35 E-value=1.9e+02 Score=28.27 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=34.7
Q ss_pred eEEEEecCCCcEEEEeCC-CCceEEcCEEeCCCCCCeecCCCCEEEeCC----eEEEEEe
Q 019952 59 ARIFYDFTRRRFALEVLG-KNGCFVEGVLHLPGNPPVKLDSQDLLQIGD----KEFYFLL 113 (333)
Q Consensus 59 A~I~~d~~~~~F~LedLS-kNGTfVNG~~I~pGs~P~~L~sGDlIqIG~----t~f~Fll 113 (333)
.++.+.. .. +|-.-| .-...|||+++.+.. ++.++.||+|+||. .+-|+-+
T Consensus 38 ~~l~f~~--~~-~iAitGA~~~~~ln~~~~~~~~-~~~v~~Gd~L~~g~~~~G~R~YLAv 93 (280)
T smart00797 38 PTLRFTA--DA-VIALTGADFPATLDGQPVPPWK-PFLVRAGQVLSLGAPKAGARAYLAV 93 (280)
T ss_pred EEEEECC--Cc-EEEEeCCCCeeeECCEEcCCCe-EEEECCCCEEEeCCCCCccEEEEEE
Confidence 3555542 23 344444 346889999997764 68999999999993 4555544
No 55
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=23.10 E-value=93 Score=23.93 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=17.9
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-+.||++.+.. ...|++||.|.|
T Consensus 51 ~v~vn~~~v~~---~~~l~dgDevai 73 (80)
T TIGR01682 51 MVAVNEEYVTD---DALLNEGDEVAF 73 (80)
T ss_pred EEEECCEEcCC---CcCcCCCCEEEE
Confidence 37889988864 268999998876
No 56
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=22.51 E-value=52 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=16.2
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
+-+|+..+.+..-...|++||.|+|
T Consensus 34 v~~N~~iv~r~~~~~~L~~gD~ieI 58 (65)
T PRK05863 34 VAVDWSVLPRSDWATKLRDGARLEV 58 (65)
T ss_pred EEECCcCcChhHhhhhcCCCCEEEE
Confidence 4557775554321235999999987
No 57
>PRK07440 hypothetical protein; Provisional
Probab=22.26 E-value=92 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=17.5
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+-+||+.+.+.. ..+.|++||.|+|
T Consensus 38 v~~N~~iv~r~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 38 VEYNGEILHRQFWEQTQVQPGDRLEI 63 (70)
T ss_pred EEECCEEeCHHHcCceecCCCCEEEE
Confidence 455888776422 1368999999987
No 58
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=22.23 E-value=1e+02 Score=23.77 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=16.6
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
+.||++.+.. .+.|++||.|.|
T Consensus 54 vavN~~~v~~---~~~l~dgDeVai 75 (82)
T PLN02799 54 LALNEEYTTE---SAALKDGDELAI 75 (82)
T ss_pred EEECCEEcCC---CcCcCCCCEEEE
Confidence 6778887643 368999998876
No 59
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=21.87 E-value=1.1e+02 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.8
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
+.|||+...++ ..++.||+|.|.
T Consensus 36 V~vNG~~aKpS---~~VK~GD~l~i~ 58 (100)
T COG1188 36 VKVNGQRAKPS---KEVKVGDILTIR 58 (100)
T ss_pred EEECCEEcccc---cccCCCCEEEEE
Confidence 89999999875 479999998876
No 60
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=21.32 E-value=52 Score=31.00 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=39.5
Q ss_pred hHHHhhhhhhHHHHHHHHHhhccCCCCceehhhHHHHHHHHhcCccccccceeeccc
Q 019952 228 QQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTA 284 (333)
Q Consensus 228 ~~~~~~ee~~v~s~~~~~lsdlcg~~ew~p~~klh~~l~~~~~~~w~~~~v~~~l~~ 284 (333)
..+...+|.+++..|+..- .|.-.-..+|++.+-.+||++|-.|.|..
T Consensus 73 kalfS~~EE~lL~~v~s~~---------~p~le~Fq~LL~~n~~vFh~sRTak~L~~ 120 (199)
T PF13325_consen 73 KALFSKEEEQLLGTVASSS---------QPSLETFQELLDKNRSVFHPSRTAKSLQD 120 (199)
T ss_pred cCCCCHHHHHHHHhhhhcc---------CCcHHHHHHHHHhChhhhccccCHHHHHH
Confidence 3466788999988877533 77778899999999999999999888853
No 61
>PHA02650 hypothetical protein; Provisional
Probab=21.15 E-value=69 Score=26.36 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHhcCccc------cccceeecccCCCCCCC---CCCCchhHHHHH
Q 019952 258 MEKLYTELVEQYGDVWH------HSRVRRYLTADEWPGPE---SKEKPWYGLLML 303 (333)
Q Consensus 258 ~~klh~~l~~~~~~~w~------~~~v~~~l~~e~~~~~~---~~~~pw~~l~~l 303 (333)
|+||.+-++--|=+-=. =+-|+..||.++.+.++ +++.+|.-+.-+
T Consensus 1 MDKLYaaiFGVFmsS~DdDFnnFI~VVkSVLtD~~~~~~~~~~~~~~~~~~~ii~ 55 (81)
T PHA02650 1 MDKLYAAIFGVFMSSTDDDFNNFIDVVKSVLSDEDGSKKTIKSVSWFNGQNFIFL 55 (81)
T ss_pred ChhHHHHHHhhhcCCcHHHHHHHHHHHHHHHcCCCCccccccccCCchHHHHHHH
Confidence 78888877622211000 13488899998887775 556777765433
No 62
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=20 Score=31.80 Aligned_cols=46 Identities=35% Similarity=0.839 Sum_probs=32.7
Q ss_pred HHHHHhcCc--cccccceeeccc-CCCCCCCCCCCchhHH-HHHHhhCCC
Q 019952 264 ELVEQYGDV--WHHSRVRRYLTA-DEWPGPESKEKPWYGL-LMLLRKYPE 309 (333)
Q Consensus 264 ~l~~~~~~~--w~~~~v~~~l~~-e~~~~~~~~~~pw~~l-~~ll~kype 309 (333)
+++|+||+. -+...+++|+.+ +-|-.-.-+-|||.-+ |.=.||||.
T Consensus 69 ei~ekygd~lFLT~eElkkY~ks~~rWg~r~kkkkpWmvi~L~nvrkY~k 118 (145)
T COG2028 69 EIIEKYGDRLFLTPEELKKYMKSRKRWGSRGKKKKPWMVIELRNVRKYPK 118 (145)
T ss_pred HHHHHhCCeeecCHHHHHHHHHHHHHhccccccCCceEEEEeechhhCCC
Confidence 678999984 244556666653 3688878888999764 455799974
Done!