Query 019952
Match_columns 333
No_of_seqs 150 out of 1100
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3va4_A Mediator of DNA damage 99.7 6.9E-18 2.4E-22 143.1 11.8 96 12-115 26-127 (132)
2 4h87_A Kanadaptin; FHA domain 99.7 6.4E-17 2.2E-21 136.7 12.7 94 12-113 22-128 (130)
3 3po8_A RV0020C protein, putati 99.7 5E-17 1.7E-21 129.9 11.3 85 17-114 12-97 (100)
4 1uht_A Expressed protein; FHA 99.7 3.4E-17 1.2E-21 134.4 9.4 102 2-112 1-109 (118)
5 3gqs_A Adenylate cyclase-like 99.7 1.5E-16 5E-21 128.6 11.6 91 15-115 9-103 (106)
6 2jqj_A DNA damage response pro 99.7 2.3E-16 8E-21 135.3 13.2 103 6-117 11-125 (151)
7 3hx1_A SLR1951 protein; P74513 99.7 1.7E-16 5.9E-21 133.9 11.8 101 1-112 1-112 (131)
8 2xt9_B Putative signal transdu 99.7 3.6E-16 1.2E-20 128.2 13.2 90 14-116 15-107 (115)
9 1lgp_A Cell cycle checkpoint p 99.7 7.6E-17 2.6E-21 131.8 8.9 89 12-107 3-96 (116)
10 1gxc_A CHK2, CDS1, serine/thre 99.7 2.2E-16 7.4E-21 135.4 11.7 96 9-112 26-139 (149)
11 1g6g_A Protein kinase RAD53; b 99.7 2E-16 6.8E-21 132.0 10.5 78 29-115 37-121 (127)
12 1mzk_A Kinase associated prote 99.7 2E-16 6.7E-21 134.0 10.5 94 13-114 10-119 (139)
13 2kb3_A Oxoglutarate dehydrogen 99.7 8.2E-16 2.8E-20 131.9 13.9 83 20-115 58-141 (143)
14 1r21_A Antigen KI-67; beta san 99.7 3.9E-16 1.3E-20 130.0 11.4 84 21-116 26-110 (128)
15 2jpe_A Nuclear inhibitor of pr 99.6 8.7E-17 3E-21 136.2 5.7 96 13-115 37-136 (140)
16 2kfu_A RV1827 PThr 22; FHA dom 99.6 1.5E-15 5.2E-20 133.1 12.9 89 14-115 59-150 (162)
17 1g3g_A Protien kinase SPK1; FH 99.6 7.2E-16 2.5E-20 134.4 10.2 87 21-116 46-150 (164)
18 3oun_A Putative uncharacterize 99.6 8.8E-16 3E-20 134.5 10.2 82 18-112 75-157 (157)
19 2pie_A E3 ubiquitin-protein li 99.6 1.4E-15 4.7E-20 128.7 9.9 84 18-106 16-102 (138)
20 1dmz_A Protein (protein kinase 99.6 1E-15 3.5E-20 132.8 7.6 87 21-115 18-124 (158)
21 4ejq_A Kinesin-like protein KI 99.6 2.1E-15 7.1E-20 130.6 9.1 89 21-116 54-146 (154)
22 1wln_A Afadin; beta sandwich, 99.6 6.2E-15 2.1E-19 121.8 11.1 87 20-116 28-116 (120)
23 2ff4_A Probable regulatory pro 99.6 9.8E-15 3.4E-19 140.6 12.5 85 20-116 298-383 (388)
24 1qu5_A Protein kinase SPK1; FH 99.6 1.5E-15 5.1E-20 135.2 5.8 87 21-115 42-148 (182)
25 3fm8_A Kinesin-like protein KI 99.6 1.1E-14 3.8E-19 122.8 10.8 82 21-114 42-124 (124)
26 2csw_A Ubiquitin ligase protei 99.6 1.9E-15 6.6E-20 128.9 6.0 76 22-106 29-110 (145)
27 3els_A PRE-mRNA leakage protei 99.6 9.6E-15 3.3E-19 127.4 9.9 86 22-112 49-156 (158)
28 3elv_A PRE-mRNA leakage protei 99.5 2.4E-14 8.1E-19 130.5 10.9 86 22-112 96-203 (205)
29 3kt9_A Aprataxin; FHA domain, 99.2 3.4E-11 1.2E-15 99.0 9.1 81 22-112 16-97 (102)
30 4egx_A Kinesin-like protein KI 99.2 3.6E-11 1.2E-15 107.2 9.8 90 21-117 84-177 (184)
31 2brf_A Bifunctional polynucleo 99.2 5.8E-11 2E-15 99.0 7.4 92 12-113 8-106 (110)
32 3huf_A DNA repair and telomere 99.1 7.8E-11 2.7E-15 113.7 8.0 88 21-114 14-112 (325)
33 3uv0_A Mutator 2, isoform B; F 99.1 2.5E-10 8.6E-15 94.1 8.4 84 17-114 10-100 (102)
34 1ujx_A Polynucleotide kinase 3 99.0 1.6E-10 5.4E-15 97.6 4.4 95 11-115 14-115 (119)
35 1yj5_C 5' polynucleotide kinas 99.0 1.2E-09 4E-14 94.9 9.5 95 11-115 7-108 (143)
36 3i6u_A CDS1, serine/threonine- 98.9 1.3E-09 4.5E-14 104.1 7.9 94 10-107 7-111 (419)
37 4a0e_A YSCD, type III secretio 98.9 1.1E-08 3.8E-13 86.7 11.7 95 13-120 7-104 (123)
38 1wv3_A Similar to DNA segregat 98.3 8.8E-07 3E-11 81.3 7.2 78 22-113 86-168 (238)
39 1p9k_A ORF, hypothetical prote 50.7 11 0.00037 28.2 2.9 32 78-111 46-77 (79)
40 2q5w_D Molybdopterin convertin 50.5 13 0.00045 27.0 3.3 23 79-104 48-70 (77)
41 3hvz_A Uncharacterized protein 50.0 12 0.00041 28.6 3.1 24 79-105 43-66 (78)
42 2hj1_A Hypothetical protein; s 48.8 7.9 0.00027 31.0 2.0 27 76-105 57-83 (97)
43 3po0_A Small archaeal modifier 42.2 21 0.00072 26.7 3.4 23 79-104 60-82 (89)
44 1m3w_A H10H24; four-helix bund 40.9 7.1 0.00024 25.4 0.4 20 250-272 1-20 (32)
45 2k6p_A Uncharacterized protein 40.2 22 0.00075 26.9 3.3 25 78-105 26-50 (92)
46 1fm0_D Molybdopterin convertin 39.5 26 0.00088 25.6 3.5 22 80-104 53-74 (81)
47 3rpf_C Molybdopterin convertin 39.3 19 0.00064 26.4 2.6 24 79-104 44-67 (74)
48 2cu3_A Unknown function protei 38.4 20 0.00069 25.6 2.6 25 80-104 32-57 (64)
49 1rws_A Hypothetical protein PF 37.6 13 0.00046 27.6 1.6 23 79-104 48-70 (77)
50 1ryj_A Unknown; beta/alpha pro 37.4 29 0.00099 25.3 3.4 22 80-104 42-63 (70)
51 2k5p_A THis protein, thiamine- 33.6 20 0.00068 27.2 2.0 27 79-105 36-63 (78)
52 1vjk_A Molybdopterin convertin 32.7 25 0.00087 27.1 2.5 22 80-104 70-91 (98)
53 1tyg_B YJBS; alpha beta barrel 32.0 28 0.00095 27.1 2.7 25 80-104 55-80 (87)
54 1dm9_A Hypothetical 15.5 KD pr 31.5 38 0.0013 28.0 3.6 24 79-105 35-58 (133)
55 2kl0_A Putative thiamin biosyn 31.4 17 0.00059 27.2 1.3 27 79-105 32-59 (73)
56 1wv3_A Similar to DNA segregat 29.4 87 0.003 28.1 5.9 42 20-72 12-54 (238)
57 1f0z_A THis protein; ubiquitin 29.4 23 0.00079 25.4 1.7 25 80-104 34-59 (66)
58 2kmm_A Guanosine-3',5'-BIS(dip 26.3 47 0.0016 23.5 2.9 24 79-105 38-61 (73)
59 3u7z_A Putative metal binding 24.8 43 0.0015 27.0 2.7 25 80-104 71-95 (101)
60 3dwg_C 9.5 kDa culture filtrat 23.8 40 0.0014 25.4 2.2 25 80-104 61-86 (93)
61 2l52_A Methanosarcina acetivor 22.8 33 0.0011 26.6 1.6 27 77-104 64-92 (99)
62 2kpm_A Uncharacterized protein 21.7 3.1E+02 0.01 22.2 7.2 69 237-323 21-89 (105)
63 2daw_A RWD domain containing p 21.4 65 0.0022 26.9 3.2 28 226-259 13-40 (154)
64 1wgk_A Riken cDNA 2900073H19 p 20.9 24 0.00082 28.7 0.4 24 80-104 76-101 (114)
65 2g1e_A Hypothetical protein TA 20.3 44 0.0015 24.7 1.8 24 80-104 58-83 (90)
66 1h3f_A Tyrosyl-tRNA synthetase 20.1 92 0.0031 30.7 4.4 34 77-112 393-428 (432)
No 1
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.75 E-value=6.9e-18 Score=143.09 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=78.6
Q ss_pred eEEEEeccc---eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEE-
Q 019952 12 GFAKLQGED---FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVL- 86 (333)
Q Consensus 12 a~AkL~G~~---~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~- 86 (333)
-+-++.|.. ..|.|....++|||.++ +||.| ++..|||+||+|.++..++.|+|+|+ |+|||||||++
T Consensus 26 ~L~v~~g~~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~i 98 (132)
T 3va4_A 26 QLRLFSGTHGPERDFPLYLGKNVVGRSPD---CSVAL----PFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPR 98 (132)
T ss_dssp EEEECCBTTBSCEEEEECSEEEEEESSTT---SSEEC----CCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTTE
T ss_pred EEEEEeCCCCCceEEEECCCCEEEccCCC---CCEEe----CCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEEc
Confidence 333444544 67999999999999987 46666 57899999999999754678999998 69999999987
Q ss_pred -eCCCCCCeecCCCCEEEeCCeEEEEEecc
Q 019952 87 -HLPGNPPVKLDSQDLLQIGDKEFYFLLPV 115 (333)
Q Consensus 87 -I~pGs~P~~L~sGDlIqIG~t~f~Fllp~ 115 (333)
+.++. ++.|++||+|+||++.|.|....
T Consensus 99 ~l~~~~-~~~L~~GD~I~lG~~~l~f~~~~ 127 (132)
T 3va4_A 99 VLPPGV-SHRLRDQELILFADFPCQYHRLD 127 (132)
T ss_dssp EECTTC-CEECCTTCEEEETTEEEEEEECC
T ss_pred ccCCCC-EEECCCCCEEEECCEEEEEEECC
Confidence 55654 69999999999999999997643
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.71 E-value=6.4e-17 Score=136.66 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=72.9
Q ss_pred eEEEEeccc--eEEEeecC-eEEECCCCCCCCeeeecCCCCCCCcccccceEEEEe---------cCCCcEEEEeC-CCC
Q 019952 12 GFAKLQGED--FEYYMQTY-SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYD---------FTRRRFALEVL-GKN 78 (333)
Q Consensus 12 a~AkL~G~~--~ey~L~~~-sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d---------~~~~~F~LedL-SkN 78 (333)
-+-++.|.. ..+.|... .++|||.++ +||.| +++.|||+||+|.|. ..++.|+|.|+ |+|
T Consensus 22 ~L~v~k~g~~~~~~~L~~~~~~~IGR~~~---~di~l----~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StN 94 (130)
T 4h87_A 22 SLETLKGGTILGTRSLKGTSYCLFGRLSG---CDVCL----EHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTH 94 (130)
T ss_dssp EEEEEETTEEEEEEECTTCSEEEEESSTT---SSEEC----CCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSS
T ss_pred EEEEEECCeeeeeEEeCCCceEEEcCCcC---CCEEe----CCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCC
Confidence 344566554 34778654 579999986 57777 678999999999873 23568999998 699
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLL 113 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~Fll 113 (333)
||||||++|.++. +++|++||+|+||.....|+|
T Consensus 95 GT~vNg~ri~~~~-~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 95 GTFLNKTRIPPRT-YCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp CEEETTEECCTTC-CEECCTTCEEEETTCSEEEEE
T ss_pred ceEECCEECCCCc-eeECCCCCEEEECCceEEEEE
Confidence 9999999998765 799999999999987666655
No 3
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.71 E-value=5e-17 Score=129.91 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=74.3
Q ss_pred eccceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCee
Q 019952 17 QGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVK 95 (333)
Q Consensus 17 ~G~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~ 95 (333)
.|....|.+.+..++|||.++ +||.| +++.|||+||+|.++ ++.|+|+|+ |+|||||||+++. +++
T Consensus 12 ~g~g~~~~l~~~~~~IGR~~~---~di~l----~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~i~----~~~ 78 (100)
T 3po8_A 12 DGSGRTYQLREGSNIIGRGQD---AQFRL----PDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAPVQ----EWQ 78 (100)
T ss_dssp SSSCCEEECCSEEEEEESSTT---CSEEC----CCTTSCSSCEEEEEC--SSCEEEEECSCSSCCEETTEECS----EEE
T ss_pred CCCCcEEEECCCCEEEeCCCC---CCEEC----CCCCcChhhCEEEEe--CCEEEEEECCCCCCEEECCEECc----eEE
Confidence 355678999999999999886 46776 578999999999996 578999998 6999999999995 489
Q ss_pred cCCCCEEEeCCeEEEEEec
Q 019952 96 LDSQDLLQIGDKEFYFLLP 114 (333)
Q Consensus 96 L~sGDlIqIG~t~f~Fllp 114 (333)
|++||.|+||.+.|.|.+.
T Consensus 79 L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 79 LADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp CCTTCEEEETTEEEEEEEE
T ss_pred CCCCCEEEECCEEEEEEEE
Confidence 9999999999999999875
No 4
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.70 E-value=3.4e-17 Score=134.42 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=77.3
Q ss_pred CCCCCCCccceEEEEe---cc--ceEEEeec-CeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC
Q 019952 2 GTISGNDVEAGFAKLQ---GE--DFEYYMQT-YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL 75 (333)
Q Consensus 2 ~~~~~~~~~~a~AkL~---G~--~~ey~L~~-~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL 75 (333)
|+|.........+.|. |. ...|.+.. ..++|||.+.. +||.| +++.|||+||+|.++ ++.|+|+|+
T Consensus 1 ~ss~~~~~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~--~di~l----~d~~vSr~Ha~i~~~--~~~~~l~Dl 72 (118)
T 1uht_A 1 GSSGSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRG--NEIAI----KDAGISTKHLRIESD--SGNWVIQDL 72 (118)
T ss_dssp CCCCCCCCCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTT--CSEEC----CSSSSCTTCEEEEEC--SSSEEEECC
T ss_pred CCCCCCCCCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCC--CCEEe----CCCCCchHHeEEEEE--CCEEEEEEC
Confidence 3443344444445444 32 24678876 57999999422 46766 578999999999996 478999999
Q ss_pred -CCCceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEE
Q 019952 76 -GKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFL 112 (333)
Q Consensus 76 -SkNGTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~Fl 112 (333)
|+|||||||+++.++. ++.|++||+|+||.+.|.|.
T Consensus 73 ~S~nGT~vng~~l~~~~-~~~L~~gd~i~lG~~~~~~~ 109 (118)
T 1uht_A 73 GSSNGTLLNSNALDPET-SVNLGDGDVIKLGEYTSILV 109 (118)
T ss_dssp CCSSCCEESSSBCCTTC-EEECCTTEEEEETTTEEEEE
T ss_pred CCCCCeEECCEECCCCC-eEEcCCCCEEEECCeEEEEE
Confidence 6999999999998764 68999999999999886653
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.69 E-value=1.5e-16 Score=128.63 Aligned_cols=91 Identities=27% Similarity=0.417 Sum_probs=73.3
Q ss_pred EEecc--ceEEEeecC-eEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCC
Q 019952 15 KLQGE--DFEYYMQTY-SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (333)
Q Consensus 15 kL~G~--~~ey~L~~~-sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pG 90 (333)
++.|. ...|.+... .++|||.+.. +||.| ++..|||+||+|.++. ++.|+|+|+ |+|||||||+++.+
T Consensus 9 v~~G~~~g~~~~l~~~~~~~iGR~~~~--~di~l----~d~~vSr~Ha~i~~~~-~~~~~l~Dl~S~nGt~vng~~i~~- 80 (106)
T 3gqs_A 9 VLAGANIGAEFHLDSGKTYIVGSDPQV--ADIVL----SDMSISRQHAKIIIGN-DNSVLIEDLGSKNGVIVEGRKIEH- 80 (106)
T ss_dssp ECC-CCTTCEEEECTTCEEEEESCTTT--CSEEC----CCTTSCSSCEEEEECT-TSCEEEEECSCSSCCEETTEECSS-
T ss_pred EEeCCCCcEEEEECCCCEEEEeECCCc--CCEEe----CCCCcchhhcEEEECC-CCcEEEEECcCCCCeEECCEECCC-
Confidence 34444 356888874 6899999832 46666 5789999999999973 467999998 69999999999964
Q ss_pred CCCeecCCCCEEEeCCeEEEEEecc
Q 019952 91 NPPVKLDSQDLLQIGDKEFYFLLPV 115 (333)
Q Consensus 91 s~P~~L~sGDlIqIG~t~f~Fllp~ 115 (333)
++.|++||+|+||.+.|.|..+.
T Consensus 81 --~~~L~~Gd~i~~G~~~~~~~~~~ 103 (106)
T 3gqs_A 81 --QSTLSANQVVALGTTLFLLVDYA 103 (106)
T ss_dssp --EEECCTTCCEEETTEEEEEEEEC
T ss_pred --CeECCCCCEEEECCEEEEEEccC
Confidence 47999999999999999997543
No 6
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.69 E-value=2.3e-16 Score=135.26 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=80.3
Q ss_pred CCCccceEEEEe--c--cceEEEeec-CeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEe----c--CCCcEEEEe
Q 019952 6 GNDVEAGFAKLQ--G--EDFEYYMQT-YSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYD----F--TRRRFALEV 74 (333)
Q Consensus 6 ~~~~~~a~AkL~--G--~~~ey~L~~-~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d----~--~~~~F~Led 74 (333)
.+.....++.|. + ....|.|.. ..++|||.++ +||.| +++.|||+||+|.++ . .++.|+|+|
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~D 83 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRS---CDVIL----SEPDISTFHAEFHLLQMDVDNFQRNLINVID 83 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTT---SSEEC----CCTTCCTTSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCC---CCEEE----CCCCCccccCEEEEecccCCcCcCCEEEEEE
Confidence 334455666654 2 234688874 8899999986 47777 578999999999992 1 247899999
Q ss_pred CCCCceEEcCEEeCCCCCCeecCCCCEEEeCC-eEEEEEecccc
Q 019952 75 LGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGD-KEFYFLLPVRS 117 (333)
Q Consensus 75 LSkNGTfVNG~~I~pGs~P~~L~sGDlIqIG~-t~f~Fllp~~s 117 (333)
+|+|||||||+++.++ ++.|++||+|+||. ..|.|.+....
T Consensus 84 lS~NGT~VNg~~i~~~--~~~L~~GD~I~lG~~~~~~f~~~~~~ 125 (151)
T 2jqj_A 84 KSRNGTFINGNRLVKK--DYILKNGDRIVFGKSCSFLFKYASSS 125 (151)
T ss_dssp CCSSCEEETTEECCSS--CEEECSSEEEEETTTEEEEEEECSSC
T ss_pred CCCCCeEECCEEcCCC--ceECCCCCEEEECCCcEEEEEEcCCC
Confidence 9999999999999865 68999999999998 47888775554
No 7
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.69 E-value=1.7e-16 Score=133.86 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=74.2
Q ss_pred CCCCCCCCccceEEEEeccc--eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC-C--cEEEEeC
Q 019952 1 MGTISGNDVEAGFAKLQGED--FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR-R--RFALEVL 75 (333)
Q Consensus 1 ~~~~~~~~~~~a~AkL~G~~--~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~-~--~F~LedL 75 (333)
|++.+......++.++.+.. ..|.+.+..++|||.++ +||.| +++.|||+||+|.++... + .|+|.|+
T Consensus 1 m~~p~~~p~~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl 73 (131)
T 3hx1_A 1 MSDPSAKPLQEHILIILDDAGRREVLLTETFYTIGRSPR---ADIRI----KSQFVSRIHAVLVRKSSDDVQAAYRIIDG 73 (131)
T ss_dssp --------CCEEEEEEEETTEEEEEEECSSEEEEESSTT---SSEEC----CCSSSCTTCEEEEEC------CCEEEEES
T ss_pred CCCCCCCCCcceEEEEECCCCcEEEEECCCCEEECCCCC---CCEEE----CCCCcChhheEEEEEccCCCceEEEEEEC
Confidence 55555555666666666553 56999999999999987 46766 578999999999986321 2 5999998
Q ss_pred ------CCCceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEEE
Q 019952 76 ------GKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFL 112 (333)
Q Consensus 76 ------SkNGTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~Fl 112 (333)
|+|||||||+++.. +.|++||+|+||.+.|.|.
T Consensus 74 ~~~~~~S~NGT~vNg~~i~~----~~L~~GD~I~iG~~~~~~~ 112 (131)
T 3hx1_A 74 DEDGQSSVNGLMINGKKVQE----HIIQTGDEIVMGPQVSVRY 112 (131)
T ss_dssp CTTSCCCSSCEEETTEEESE----EECCTTCEEECSTTCEEEE
T ss_pred CCCCCCCCCceEECCEEeEe----EECCCCCEEEECCEEEEEE
Confidence 89999999999963 7999999999998766544
No 8
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.68 E-value=3.6e-16 Score=128.18 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=74.6
Q ss_pred EEEecc--ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCC
Q 019952 14 AKLQGE--DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (333)
Q Consensus 14 AkL~G~--~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pG 90 (333)
-++.|. ...|.|....++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.
T Consensus 15 ~v~~g~~~g~~~~l~~~~~~IGR~~~---~di~l----~d~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~i~-- 83 (115)
T 2xt9_B 15 VVKRGPNAGSRFLLDQPTTSAGRHPD---SDIFL----DDVTVSRRHAEFRLE--GGEFQVVDVGSLNGTYVNREPVD-- 83 (115)
T ss_dssp EEEESTTTTCEEEECSSEEEEESSTT---SSEEC----CSTTSCSSCEEEEEE--TTEEEEEECSCSSCEEETTEECS--
T ss_pred EEEeCCCCCeEEEECCCCEEECCCCC---CCEEe----CCcccChhheEEEEE--CCEEEEEECCCCCCeEECCEEcc--
Confidence 344454 367999999999999986 46766 578999999999997 579999999 6999999999995
Q ss_pred CCCeecCCCCEEEeCCeEEEEEeccc
Q 019952 91 NPPVKLDSQDLLQIGDKEFYFLLPVR 116 (333)
Q Consensus 91 s~P~~L~sGDlIqIG~t~f~Fllp~~ 116 (333)
++.|++||+|+||.+.|.|..+..
T Consensus 84 --~~~L~~gd~i~iG~~~l~~~~~~~ 107 (115)
T 2xt9_B 84 --SAVLANGDEVQIGKFRLVFLTGPK 107 (115)
T ss_dssp --EEEECTTCEEEETTEEEEEEC---
T ss_pred --eEECCCCCEEEECCEEEEEEeCCC
Confidence 489999999999999999986543
No 9
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.68 E-value=7.6e-17 Score=131.77 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=73.3
Q ss_pred eEEEEecc-----ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEE
Q 019952 12 GFAKLQGE-----DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVL 86 (333)
Q Consensus 12 a~AkL~G~-----~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~ 86 (333)
++|+|... ...|.+....++|||+++ +||.| .+++.|||+||+|.++..++.|+|+|.|+|||||||++
T Consensus 3 ~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~---~di~l---~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~ 76 (116)
T 1lgp_A 3 PWGRLLRLGAEEGEPHVLLRKREWTIGRRRG---CDLSF---PSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLK 76 (116)
T ss_dssp CCEEECCTTCCSSSCCEEECSSEEEEESSTT---SSEEC---TTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCC
T ss_pred CEEEEEEeCCCCCccEEEECCCCEEECCCCC---CCEEe---CCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEE
Confidence 46777533 246889999999999996 46666 24469999999999975468999999889999999999
Q ss_pred eCCCCCCeecCCCCEEEeCCe
Q 019952 87 HLPGNPPVKLDSQDLLQIGDK 107 (333)
Q Consensus 87 I~pGs~P~~L~sGDlIqIG~t 107 (333)
+.++. +++|++||+|+||..
T Consensus 77 l~~~~-~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 77 VVKKQ-TCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCSS-CCCCCTTCEEEEECC
T ss_pred cCCCC-cEECCCCCEEEEecc
Confidence 98765 689999999999974
No 10
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.68 E-value=2.2e-16 Score=135.36 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=74.3
Q ss_pred ccceEEEEec---cceEEEeecCeEEECCCCCCCCeeeecCCCCCCC---------cccccceEEEEecCC---CcEEEE
Q 019952 9 VEAGFAKLQG---EDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGM---------NISRHHARIFYDFTR---RRFALE 73 (333)
Q Consensus 9 ~~~a~AkL~G---~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~---------~ISR~HA~I~~d~~~---~~F~Le 73 (333)
....+|.|.. ....|.|....++|||.+. +||.| ++. .|||+||+|.++..+ ..|+|+
T Consensus 26 ~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~---~di~l----~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~ 98 (149)
T 1gxc_A 26 TPAPWARLWALQDGFANLECVNDNYWFGRDKS---CEYCF----DEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIE 98 (149)
T ss_dssp ---CCEEEEECSTTCCCEEECSSEEEEESSTT---CSEEC----CCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCeeEEEEEcCCCCceEEECCCCEEecCCCC---CCEEE----CCccccccccCCcCchhheEEEEECCCCceeEEEEE
Confidence 5567888873 2345889999999999986 45555 233 599999999998521 189999
Q ss_pred eCCCCceEEcCEEeCCCCCCeecCCCCEEEeCC---eEEEEE
Q 019952 74 VLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGD---KEFYFL 112 (333)
Q Consensus 74 dLSkNGTfVNG~~I~pGs~P~~L~sGDlIqIG~---t~f~Fl 112 (333)
|+|+|||||||+++.++. ++.|++||+|+||. ..|.|.
T Consensus 99 D~StNGT~VNg~~i~~~~-~~~L~~GD~I~lG~~~~~~f~f~ 139 (149)
T 1gxc_A 99 DHSGNGTFVNTELVGKGK-RRPLNNNSEIALSLSRNKVFVFF 139 (149)
T ss_dssp ECCSSCEEETTEECCTTC-EEECCTTEEEEESSTTCEEEEEE
T ss_pred ECCCCCeEECCEECCCCC-eEECCCCCEEEECCCCCeEEEEE
Confidence 999999999999998875 69999999999998 345553
No 11
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.67 E-value=2e-16 Score=131.98 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=67.0
Q ss_pred eEEECCCCCCCCeeeecCCCCCCC-cccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCCEEEeCCe
Q 019952 29 SIILGRNSKKSTVDVDLSSLGGGM-NISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDK 107 (333)
Q Consensus 29 sIvIGRss~~~~VDIDLs~lg~s~-~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGDlIqIG~t 107 (333)
.++|||+++ +||.| ++. .|||+||+|.++. ++.|+|+|+|+|||||||+++.++. ++.|.+||+|+||.+
T Consensus 37 ~~~IGR~~~---~di~l----~~~~~vSr~Ha~i~~~~-~g~~~l~DlS~NGT~vNg~~l~~~~-~~~L~~Gd~I~lG~~ 107 (127)
T 1g6g_A 37 VWTFGRNPA---CDYHL----GNISRLSNKHFQILLGE-DGNLLLNDISTNGTWLNGQKVEKNS-NQLLSQGDEITVGVG 107 (127)
T ss_dssp EEEEESSTT---SSEEC----CSCTTSCSSCEEEEECT-TSCEEEEECCSSCCEETTEECCTTC-CEECCTTCEEEECTT
T ss_pred CEEECCCCC---CCEEe----CCCCCCChhHeEEEECC-CCcEEEEECCcCCeEECCEEcCCCC-eEEcCCCCEEEECCC
Confidence 899999997 46766 344 6999999999963 5789999999999999999998765 699999999999985
Q ss_pred ------EEEEEecc
Q 019952 108 ------EFYFLLPV 115 (333)
Q Consensus 108 ------~f~Fllp~ 115 (333)
+|.|.+|.
T Consensus 108 ~~~~~i~f~~~~~~ 121 (127)
T 1g6g_A 108 VESDILSLVIFIND 121 (127)
T ss_dssp SGGGCEEEEEEECH
T ss_pred ccCceEEEEEEeCc
Confidence 58888764
No 12
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.67 E-value=2e-16 Score=134.05 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=76.1
Q ss_pred EEEEecc--ceEEEeecC-----eEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcC
Q 019952 13 FAKLQGE--DFEYYMQTY-----SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEG 84 (333)
Q Consensus 13 ~AkL~G~--~~ey~L~~~-----sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG 84 (333)
+.++.|. ...|.+... .++|||.++ +||.| ++..|||+||+|.++.+++.|+|+|+ |+|||||||
T Consensus 10 L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg 82 (139)
T 1mzk_A 10 LEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSP---SDLAL----KDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNS 82 (139)
T ss_dssp EEECSSTTCSCEEEECTTCSTTCSEEEESSSS---CSEEC----CCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETT
T ss_pred EEEEeCCCCCeEEEecCCCCccceEEeeCCCC---CCEEe----CCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECC
Confidence 3444554 356888774 799999987 46766 57899999999999864458999999 699999999
Q ss_pred EEeCC--------CCCCeecCCCCEEEeCCeEEEEEec
Q 019952 85 VLHLP--------GNPPVKLDSQDLLQIGDKEFYFLLP 114 (333)
Q Consensus 85 ~~I~p--------Gs~P~~L~sGDlIqIG~t~f~Fllp 114 (333)
+++.+ +. ++.|++||+|+||.+.|.|...
T Consensus 83 ~~i~~~~~~~~~~~~-~~~L~~GD~I~iG~~~~~~~~~ 119 (139)
T 1mzk_A 83 HSISHPDLGSRKWGN-PVELASDDIITLGTTTKVYVRI 119 (139)
T ss_dssp EESSCCCTTTCCCCC-CEECCTTEEEECSSSCEEEEEE
T ss_pred EECcCcccccccCCc-eEECCCCCEEEECCEEEEEEEc
Confidence 99974 43 6999999999999999997643
No 13
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.67 E-value=8.2e-16 Score=131.90 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=72.8
Q ss_pred ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeecCC
Q 019952 20 DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDS 98 (333)
Q Consensus 20 ~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L~s 98 (333)
...|.|....++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++. ++.|++
T Consensus 58 g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~--~~~~~l~DlgS~NGT~VNg~~i~----~~~L~~ 124 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPE---SDIFL----DDVTVSRRHAEFRIN--EGEFEVVDVGSLNGTYVNREPRN----AQVMQT 124 (143)
T ss_dssp TCEEEECSSEEEESSCTT---CSBCC----CCSSCCSSSEEEEEE--TTEEEEEESCCSSCCEETTEECS----EEECCT
T ss_pred CeEEEeCCCCeeccCCCC---CCEEe----CCCCcChhhEEEEEE--CCEEEEEECCCcCCeEECCEEcc----eEECCC
Confidence 367999999999999986 46666 578999999999996 589999999 6999999999996 489999
Q ss_pred CCEEEeCCeEEEEEecc
Q 019952 99 QDLLQIGDKEFYFLLPV 115 (333)
Q Consensus 99 GDlIqIG~t~f~Fllp~ 115 (333)
||.|+||.+.|.|....
T Consensus 125 GD~I~iG~~~l~f~~~~ 141 (143)
T 2kb3_A 125 GDEIQIGKFRLVFLAGP 141 (143)
T ss_dssp TEEEEETTEEEEEEECC
T ss_pred CCEEEECCEEEEEEeCC
Confidence 99999999999997643
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.66 E-value=3.9e-16 Score=129.95 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=72.5
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeecCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQ 99 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L~sG 99 (333)
..|.|....++|||+++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.. ++.|++|
T Consensus 26 ~~~~l~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vNg~~i~~---~~~L~~G 93 (128)
T 1r21_A 26 PHFPLSLSTCLFGRGIE---CDIRI----QLPVVSKQHCKIEIH--EQEAILHNFSSTNPTQVNGSVIDE---PVRLKHG 93 (128)
T ss_dssp EEEECCSSEEEEESSTT---SSEEC----CCTTSCTTCEEEEEC--SSCEEECCCCSSSCCEETTEECSS---CEECCTT
T ss_pred eEEEECCCCEEECCCCC---CCEEE----CCCCCChhHEEEEEE--CCEEEEEECCCCCCEEECCEECCC---cEEcCCC
Confidence 46999999999999987 46776 578999999999996 479999999 59999999999962 6899999
Q ss_pred CEEEeCCeEEEEEeccc
Q 019952 100 DLLQIGDKEFYFLLPVR 116 (333)
Q Consensus 100 DlIqIG~t~f~Fllp~~ 116 (333)
|+|+||.+.|.|..+..
T Consensus 94 d~i~iG~~~~~~~~~~~ 110 (128)
T 1r21_A 94 DVITIIDRSFRYENESL 110 (128)
T ss_dssp EEEECSSCEEEEEEC--
T ss_pred CEEEECCEEEEEEeCCc
Confidence 99999999999987644
No 15
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.65 E-value=8.7e-17 Score=136.17 Aligned_cols=96 Identities=20% Similarity=0.322 Sum_probs=77.9
Q ss_pred EEEEeccc--eEEEeecC-eEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeC
Q 019952 13 FAKLQGED--FEYYMQTY-SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHL 88 (333)
Q Consensus 13 ~AkL~G~~--~ey~L~~~-sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~ 88 (333)
+.++.|.. ..|.|... .++|||.++. +||.| ++..|||+||+|.++..++.|+|+|+ |+|||||||+++.
T Consensus 37 L~v~~g~~~g~~~~l~~~~~~~IGR~~~~--~di~l----~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~ 110 (140)
T 2jpe_A 37 LDVVKGDKLIEKLIIDEKKYYLFGRNPDL--CDFTI----DHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLE 110 (140)
T ss_dssp EEEESSSSEEEEECCSSCSBCCBSSCTTT--SSSCC----CCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEEC
T ss_pred EEEEcCCCcceEEEeCCCCeEEecCCCcc--CCEEe----CCCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEECC
Confidence 44566654 46888875 4999999872 35665 57899999999999854478999998 7999999999998
Q ss_pred CCCCCeecCCCCEEEeCCeEEEEEecc
Q 019952 89 PGNPPVKLDSQDLLQIGDKEFYFLLPV 115 (333)
Q Consensus 89 pGs~P~~L~sGDlIqIG~t~f~Fllp~ 115 (333)
++. ++.|++||+|+||.+.+.|.+..
T Consensus 111 ~~~-~~~L~~gd~i~~G~~~~~f~~~~ 136 (140)
T 2jpe_A 111 PHK-PQQIPIDSTVSFGASTRAYTLRE 136 (140)
T ss_dssp SSS-CCEECTTCCBBCSSCCCCBCCBC
T ss_pred CCc-cEECCCCCEEEECCceEEEEEec
Confidence 765 68999999999999888876543
No 16
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.64 E-value=1.5e-15 Score=133.14 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=75.7
Q ss_pred EEEecc--ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCC
Q 019952 14 AKLQGE--DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPG 90 (333)
Q Consensus 14 AkL~G~--~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pG 90 (333)
-++.|. ...|.|.+..++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++.
T Consensus 59 ~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~HA~I~~~--~~~~~l~DlgS~NGT~VNg~~i~-- 127 (162)
T 2kfu_A 59 VVKRGPNAGSRFLLDQAITSAGRHPD---SDIFL----DDVTVSRRHAEFRLE--NNEFNVVDVGSLNGTYVNREPVD-- 127 (162)
T ss_dssp EEEESTTCSCEEETTSSEEEEESCSS---SSEES----TTTSSSSCSEEEEEE--TTEEEEECCCCSSCEEETTBCCS--
T ss_pred EEEeCCCCCeEEEECCCCEEECCCCC---CCEEE----CCCCcChhhEEEEEE--CCEEEEEECCCCCCeEECCEEcc--
Confidence 344454 367999999999999986 46777 578999999999997 579999999 6999999999995
Q ss_pred CCCeecCCCCEEEeCCeEEEEEecc
Q 019952 91 NPPVKLDSQDLLQIGDKEFYFLLPV 115 (333)
Q Consensus 91 s~P~~L~sGDlIqIG~t~f~Fllp~ 115 (333)
++.|++||+|+||.+.|.|..+.
T Consensus 128 --~~~L~~GD~I~iG~~~l~f~~~~ 150 (162)
T 2kfu_A 128 --SAVLANGDEVQIGKFRLVFLTGP 150 (162)
T ss_dssp --EEECCSSCEEEETTEEEEEECSC
T ss_pred --eEECCCCCEEEECCEEEEEEeCC
Confidence 48999999999999999997644
No 17
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.63 E-value=7.2e-16 Score=134.37 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=72.6
Q ss_pred eEEEeecC-----------eEEECCCCCCCCeeeecCCCCCCC-cccccceEEEEecCCCcEEEEeCCCCceEEcCEEeC
Q 019952 21 FEYYMQTY-----------SIILGRNSKKSTVDVDLSSLGGGM-NISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHL 88 (333)
Q Consensus 21 ~ey~L~~~-----------sIvIGRss~~~~VDIDLs~lg~s~-~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~ 88 (333)
..|.+... .++|||+++ +||.| ++. .|||+||+|.++. ++.|+|+|+|+|||||||+++.
T Consensus 46 ~~~~l~~~~v~~~~~~~~~~~~IGR~~~---~di~l----~d~~~vSr~Ha~I~~~~-~g~~~l~DlS~NGT~vNg~~i~ 117 (164)
T 1g3g_A 46 RDLSADISQVLKEKRSIKKVWTFGRNPA---CDYHL----GNISRLSNKHFQILLGE-DGNLLLNDISTNGTWLNGQKVE 117 (164)
T ss_dssp EEECCCHHHHHHCSSSCCEEEEEESSSS---SSEEC----CCCTTTTSSCEEEEECS-TTCEEEEECCSSCEEETTEEEC
T ss_pred eEEEeccccccccccccCCcEEECCCCC---CCEEe----CCcCCcChhHEEEEECC-CCCEEEEECCCCCeEECCEEcC
Confidence 56777744 889999987 46766 344 7999999999963 5789999999999999999998
Q ss_pred CCCCCeecCCCCEEEeCCe------EEEEEeccc
Q 019952 89 PGNPPVKLDSQDLLQIGDK------EFYFLLPVR 116 (333)
Q Consensus 89 pGs~P~~L~sGDlIqIG~t------~f~Fllp~~ 116 (333)
++. ++.|.+||+|+||.. +|.|.+|..
T Consensus 118 ~~~-~~~L~~GD~I~iG~~~~~~~~~f~~~~~~~ 150 (164)
T 1g3g_A 118 KNS-NQLLSQGDEITVGVGVESDILSLVIFINDK 150 (164)
T ss_dssp TTE-EEECCTTCEEEESCSSTTSCEEEEEEECHH
T ss_pred CCC-ceEcCCCCEEEECCCCCCCcEEEEEEeCch
Confidence 764 699999999999986 788888754
No 18
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.63 E-value=8.8e-16 Score=134.52 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=71.9
Q ss_pred ccceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeec
Q 019952 18 GEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKL 96 (333)
Q Consensus 18 G~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L 96 (333)
|....|.|....++|||.++ +||.| ++..|||+||+|.++ ++.|+|+|+ |+|||||||+++. +++|
T Consensus 75 g~g~~~~L~~~~~~IGR~~~---~dI~L----~d~~VSr~HA~I~~~--~~~~~l~DlgStNGT~VNG~~i~----~~~L 141 (157)
T 3oun_A 75 GSGRTYQLREGSNIIGRGQD---AQFRL----PDTGVSRRHLEIRWD--GQVALLADLNSTNGTTVNNAPVQ----EWQL 141 (157)
T ss_dssp TTCCEEECCSEEEEEESSTT---CSEEC----CCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEECS----EEEC
T ss_pred CCCeEEEECCCcEEEEeCCC---CCEEe----CCCCcChhHEEEEEE--CCEEEEEECCCCCCeEECCEECc----eEEC
Confidence 55678999999999999886 46766 578999999999996 478999999 6999999999995 4899
Q ss_pred CCCCEEEeCCeEEEEE
Q 019952 97 DSQDLLQIGDKEFYFL 112 (333)
Q Consensus 97 ~sGDlIqIG~t~f~Fl 112 (333)
++||+|+||.+.|+|+
T Consensus 142 ~~GD~I~lG~~~l~fr 157 (157)
T 3oun_A 142 ADGDVIRLGHSEIIVR 157 (157)
T ss_dssp CTTCEEEETTEEEEEC
T ss_pred CCCCEEEECCEEEEEC
Confidence 9999999999999884
No 19
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.62 E-value=1.4e-15 Score=128.71 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=66.3
Q ss_pred ccc-eEEEee-cCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCe
Q 019952 18 GED-FEYYMQ-TYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPV 94 (333)
Q Consensus 18 G~~-~ey~L~-~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~ 94 (333)
|.. ..|.+. ...++|||.+. +||.|..-.....|||+||+|.++. ++.|+|+|+ |+|||||||+++.++. ++
T Consensus 16 G~~~~~~~l~~~~~~~IGR~~~---~di~l~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~~l~~~~-~~ 90 (138)
T 2pie_A 16 GMSAGWLLLEDGCEVTVGRGFG---VTYQLVSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRARLEPLR-VY 90 (138)
T ss_dssp TCSSCBEEECTTCCEEEESSSS---SSEECCCSSCTTSSCSSCEEEEECT-TSCEEEEECSCSSCEEETTEECCTTC-CE
T ss_pred CCCCCEEEecCCCeEEECCCCC---CCEEeCCCCcCCCCChhHeEEEEcC-CCcEEEEECCCCCCeEECCEEcCCCC-cE
Confidence 443 457776 67899999996 4666621111124999999999963 578999998 7999999999998765 79
Q ss_pred ecCCCCEEEeCC
Q 019952 95 KLDSQDLLQIGD 106 (333)
Q Consensus 95 ~L~sGDlIqIG~ 106 (333)
.|++||+|+||.
T Consensus 91 ~L~~GD~I~lG~ 102 (138)
T 2pie_A 91 SIHQGDYIQLGV 102 (138)
T ss_dssp ECCTTCEEEESC
T ss_pred ECCCCCEEEECC
Confidence 999999999998
No 20
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.60 E-value=1e-15 Score=132.85 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=71.9
Q ss_pred eEEEeecCe--EEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC-------------CcEEEEeCCCCceEEcCE
Q 019952 21 FEYYMQTYS--IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR-------------RRFALEVLGKNGCFVEGV 85 (333)
Q Consensus 21 ~ey~L~~~s--IvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~-------------~~F~LedLSkNGTfVNG~ 85 (333)
..|+|.... ++|||++. +||.| ++..|||+||+|.++... +.|+|.|+|+|||||||+
T Consensus 18 ~~i~L~~~~~~~~IGR~~~---~di~l----~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ 90 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSED---CNCKI----EDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNN 90 (158)
T ss_dssp CCEEETTSCSCEEEESSTT---SSEEC----CCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTE
T ss_pred eEEEEcCCCceEEECCCCC---CCEEe----CCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCE
Confidence 357776655 99999986 46766 577999999999996411 579999999999999999
Q ss_pred EeCCCCCCeecCCCCEEEe-----CCeEEEEEecc
Q 019952 86 LHLPGNPPVKLDSQDLLQI-----GDKEFYFLLPV 115 (333)
Q Consensus 86 ~I~pGs~P~~L~sGDlIqI-----G~t~f~Fllp~ 115 (333)
++.++. ++.|++||+|+| |.+.|.|.+..
T Consensus 91 ri~~~~-~~~L~~GD~I~l~~d~~G~~~l~f~~~~ 124 (158)
T 1dmz_A 91 RMIQGT-KFLLQDGDEIKIIWDKNNKFVIGFKVEI 124 (158)
T ss_dssp ECCSSE-EEECCSSCCEESCCCTTTTCCCCEEEEC
T ss_pred EcCCCc-eEEcCCCCEEEEeecCCCCEEEEEEEEe
Confidence 998765 689999999999 99888887643
No 21
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.60 E-value=2.1e-15 Score=130.56 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=72.9
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC---CcEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR---RRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~---~~F~LedLSkNGTfVNG~~I~pGs~P~~L~ 97 (333)
..|+|....++|||......+||.| .+..|||+||+|.++.++ ..++++..|+|||||||++|.. ++.|+
T Consensus 54 lvy~L~~g~t~IGR~~~~~~~DI~L----~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~---~~~L~ 126 (154)
T 4ejq_A 54 LLYYIKDGITRVGREDGERRQDIVL----SGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTE---PSILR 126 (154)
T ss_dssp EEEECCSEEEEEECSSCSSCCSEEC----CCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCS---CEECC
T ss_pred EEEEeCCCCEEEcCCCCCCCCCEEE----CCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCC---ceECC
Confidence 4599999999999987655688988 688999999999998533 2345566789999999999952 68999
Q ss_pred CCCEEEeCCe-EEEEEeccc
Q 019952 98 SQDLLQIGDK-EFYFLLPVR 116 (333)
Q Consensus 98 sGDlIqIG~t-~f~Fllp~~ 116 (333)
+||+|.||.. .|+|..|..
T Consensus 127 ~GD~I~~G~~~~Frf~~P~~ 146 (154)
T 4ejq_A 127 SGNRIIMGKSHVFRFNHPEQ 146 (154)
T ss_dssp TTCEEEETTTEEEEEECHHH
T ss_pred CCCEEEECCcEEEEEcChHH
Confidence 9999999975 578876654
No 22
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.59 E-value=6.2e-15 Score=121.82 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=72.0
Q ss_pred ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCC-CCceEEcCEEeCCCCCCeecCC
Q 019952 20 DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLG-KNGCFVEGVLHLPGNPPVKLDS 98 (333)
Q Consensus 20 ~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLS-kNGTfVNG~~I~pGs~P~~L~s 98 (333)
...|.|....++|||... ..+||.| ++..|||+||+|.++ ++.|+|++++ +|||||||+++. .++.|++
T Consensus 28 ~~~~~L~~~~~~IGr~r~-~~~di~l----~~~~vSr~Ha~i~~~--~~~~~l~dl~S~ngt~vNg~~i~---~~~~L~~ 97 (120)
T 1wln_A 28 PKLYRLQLSVTEVGTEKF-DDNSIQL----FGPGIQPHHCDLTNM--DGVVTVTPRSMDAETYVDGQRIS---ETTMLQS 97 (120)
T ss_dssp CCEEECCSEEEECSSSCC-STTCCCC----CCTTCCSSCEEEEES--SSCEEEEESCSSSCEEETSCBCS---SCEEECT
T ss_pred cEEEEECCCCEEECCCCC-CCCcEEE----CCCCCchhheEEEEc--CCEEEEEECCCCCCEEECCEEcC---CCEECCC
Confidence 346999999999997421 1357777 578999999999986 5789999995 899999999996 2689999
Q ss_pred CCEEEeCC-eEEEEEeccc
Q 019952 99 QDLLQIGD-KEFYFLLPVR 116 (333)
Q Consensus 99 GDlIqIG~-t~f~Fllp~~ 116 (333)
||+|+||. ..|+|..|..
T Consensus 98 GD~I~iG~~~~~~f~~p~~ 116 (120)
T 1wln_A 98 GMRLQFGTSHVFKFVDPSG 116 (120)
T ss_dssp TCEEEETTTEEEEEECSSC
T ss_pred CCEEEECCceEEEEECCcc
Confidence 99999999 8888876654
No 23
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.57 E-value=9.8e-15 Score=140.59 Aligned_cols=85 Identities=29% Similarity=0.409 Sum_probs=74.1
Q ss_pred ceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeecCC
Q 019952 20 DFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDS 98 (333)
Q Consensus 20 ~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L~s 98 (333)
...|.+....++|||+++ +||.| +++.|||+||+|.++ ++.|+|+|+ |+|||||||+++. .++.|++
T Consensus 298 g~~~~l~~~~~~iGR~~~---~di~l----~~~~vSr~Ha~i~~~--~~~~~l~Dl~S~nGt~vng~~i~---~~~~L~~ 365 (388)
T 2ff4_A 298 GRGYPLQAAATRIGRLHD---NDIVL----DSANVSRHHAVIVDT--GTNYVINDLRSSNGVHVQHERIR---SAVTLND 365 (388)
T ss_dssp CCEEECCSSEEEEESSTT---SSEEC----CCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEECS---SEEEECT
T ss_pred CcEEEECCCCEEEecCCC---CeEEE----CCCccChhHeEEEEE--CCEEEEEECCCCCCeEECCEECC---CceECCC
Confidence 467999999999999987 46766 578999999999996 578999997 6999999999994 2689999
Q ss_pred CCEEEeCCeEEEEEeccc
Q 019952 99 QDLLQIGDKEFYFLLPVR 116 (333)
Q Consensus 99 GDlIqIG~t~f~Fllp~~ 116 (333)
||+|+||++.|.|..+..
T Consensus 366 gd~i~~G~~~~~~~~~~~ 383 (388)
T 2ff4_A 366 GDHIRICDHEFTFQISAG 383 (388)
T ss_dssp TCEEEETTEEEEEECSCC
T ss_pred CCEEEECCEEEEEEeCCC
Confidence 999999999999987554
No 24
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.57 E-value=1.5e-15 Score=135.22 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=71.9
Q ss_pred eEEEeecCe--EEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC-------------CcEEEEeCCCCceEEcCE
Q 019952 21 FEYYMQTYS--IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR-------------RRFALEVLGKNGCFVEGV 85 (333)
Q Consensus 21 ~ey~L~~~s--IvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~-------------~~F~LedLSkNGTfVNG~ 85 (333)
..|.|.... ++|||+++ +||.| ++..|||+||+|.++... +.|+|.|+|+|||||||+
T Consensus 42 ~~i~L~~~~~~~~IGR~~~---~di~l----~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VNg~ 114 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSED---CNCKI----EDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNN 114 (182)
T ss_dssp SCCCBTTCCSSEEESSSTT---SSSCC----CCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEETTE
T ss_pred eEEEEcCCCceEEECCCCC---CCEEE----CCCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEECCE
Confidence 457777655 99999986 46666 577999999999997411 689999999999999999
Q ss_pred EeCCCCCCeecCCCCEEEe-----CCeEEEEEecc
Q 019952 86 LHLPGNPPVKLDSQDLLQI-----GDKEFYFLLPV 115 (333)
Q Consensus 86 ~I~pGs~P~~L~sGDlIqI-----G~t~f~Fllp~ 115 (333)
++.++. ++.|.+||+|+| |.+.|.|.+..
T Consensus 115 ri~~~~-~~~L~~GD~I~l~~d~~G~~~l~f~~~~ 148 (182)
T 1qu5_A 115 RMIQGT-KFLLQDGDEIKIIWDKNNKFVIGFKVEI 148 (182)
T ss_dssp ECCSSE-EEECCTTBCCEEEEEGGGTEEEECCEEE
T ss_pred EcCCCc-ceEcCCCCEEEEEEcCCCCEEEEEEEEe
Confidence 998765 699999999999 99998886633
No 25
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.57 E-value=1.1e-14 Score=122.77 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=69.0
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGD 100 (333)
..|+|.. .++|||.++ +||.| .+..|||+||+|.++. ++.|+|+++++|||||||++|. .+++|++||
T Consensus 42 l~y~L~~-~t~IGR~~~---~DI~L----~~~~Vs~~Ha~I~~~~-~g~~~l~dl~~ngt~VNG~~V~---~~~~L~~GD 109 (124)
T 3fm8_A 42 LVYYLKE-HTLIGSANS---QDIQL----CGMGILPEHCIIDITS-EGQVMLTPQKNTRTFVNGSSVS---SPIQLHHGD 109 (124)
T ss_dssp CEEECCS-EEEEESSTT---CSEEC----CSTTCCSSCEEEEECT-TSCEEEEECTTCCEEETTEECC---SCEEECTTC
T ss_pred EEEECCC-CeEECCCCC---CCEEE----CCCCeecceEEEEECC-CCeEEEEECCCCCEEECCEEcC---CcEECCCCC
Confidence 4588877 589999986 57887 5789999999999863 5789999999999999999996 268999999
Q ss_pred EEEeCC-eEEEEEec
Q 019952 101 LLQIGD-KEFYFLLP 114 (333)
Q Consensus 101 lIqIG~-t~f~Fllp 114 (333)
+|.||. ..|+|..|
T Consensus 110 ~I~lG~~~~FrFn~P 124 (124)
T 3fm8_A 110 RILWGNNHFFRLNLP 124 (124)
T ss_dssp EEEETTTEEEEEECC
T ss_pred EEEECCCeEEEEECc
Confidence 999996 56777544
No 26
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.57 E-value=1.9e-15 Score=128.95 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=63.6
Q ss_pred EEEe-ecCeEEECCCCCCCCeeeecCCCCCCCc----ccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCee
Q 019952 22 EYYM-QTYSIILGRNSKKSTVDVDLSSLGGGMN----ISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVK 95 (333)
Q Consensus 22 ey~L-~~~sIvIGRss~~~~VDIDLs~lg~s~~----ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~ 95 (333)
.|.+ ....++|||.++ +||.| ++.. |||+||+|.++. ++.|+|+|+ |+|||||||+++.++. ++.
T Consensus 29 ~~~l~~~~~~~IGR~~~---~di~l----~~~~~~~~VSr~Ha~i~~~~-~g~~~l~Dl~S~NGT~vNg~~i~~~~-~~~ 99 (145)
T 2csw_A 29 WLLLEDGCEVTVGRGFG---VTYQL----VSKICPLMISRNHCVLKQNP-EGQWTIMDNKSLNGVWLNRARLEPLR-VYS 99 (145)
T ss_dssp BEECCTTCCEEEESSTT---SSEEC----CCSSCGGGSCTTCEEEEECT-TSCEEEEBSSCSSCEEESSCBCCBTC-CEE
T ss_pred eEEeCCCCcEEECCCCC---CCEEE----CCCCcCCCCChhHeEEEEcC-CCeEEEEECCCCCCeEECCEECCCCc-cEE
Confidence 4666 566899999986 46666 3444 999999999963 578999997 6999999999998765 799
Q ss_pred cCCCCEEEeCC
Q 019952 96 LDSQDLLQIGD 106 (333)
Q Consensus 96 L~sGDlIqIG~ 106 (333)
|++||+|+||.
T Consensus 100 L~~GD~I~iG~ 110 (145)
T 2csw_A 100 IHQGDYIQLGV 110 (145)
T ss_dssp CCSSCCEEESC
T ss_pred CCCCCEEEECC
Confidence 99999999998
No 27
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.6e-15 Score=127.38 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=68.3
Q ss_pred EEEeec-CeEEECCCCC------------CCCeeeecCCCCCCCcccccceEEEEecCCC--cEEEEeC-CCCceEEcCE
Q 019952 22 EYYMQT-YSIILGRNSK------------KSTVDVDLSSLGGGMNISRHHARIFYDFTRR--RFALEVL-GKNGCFVEGV 85 (333)
Q Consensus 22 ey~L~~-~sIvIGRss~------------~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~--~F~LedL-SkNGTfVNG~ 85 (333)
.|.|.. ..++|||.+. ...+||.| +++.|||+||+|.++...+ .|+|.|+ |+|||||||+
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l----~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ 124 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGI----PEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNV 124 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEE----CCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTE
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEc----CCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCE
Confidence 577765 4789999963 12367777 6789999999999985321 3999998 7999999999
Q ss_pred EeCCCCCCeecCCCCEEEeC------CeEEEEE
Q 019952 86 LHLPGNPPVKLDSQDLLQIG------DKEFYFL 112 (333)
Q Consensus 86 ~I~pGs~P~~L~sGDlIqIG------~t~f~Fl 112 (333)
++.++. +++|++||+|+|| ..+|.|+
T Consensus 125 ri~~~~-~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 125 VIPGAR-YIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp ECCTTC-CEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred EcCCCc-eEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 998765 6999999999999 4555554
No 28
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.54 E-value=2.4e-14 Score=130.51 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=68.9
Q ss_pred EEEee-cCeEEECCCCC------------CCCeeeecCCCCCCCcccccceEEEEecCCC--cEEEEeC-CCCceEEcCE
Q 019952 22 EYYMQ-TYSIILGRNSK------------KSTVDVDLSSLGGGMNISRHHARIFYDFTRR--RFALEVL-GKNGCFVEGV 85 (333)
Q Consensus 22 ey~L~-~~sIvIGRss~------------~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~--~F~LedL-SkNGTfVNG~ 85 (333)
.|.|. +..++|||.+. ...+||.| +++.|||+||+|.+...++ .|+|.|+ |+|||||||+
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL----~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~ 171 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGI----PEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNV 171 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEE----CCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTE
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEe----CCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCE
Confidence 58884 57899999963 23478887 6789999999999875322 4899988 7999999999
Q ss_pred EeCCCCCCeecCCCCEEEeC------CeEEEEE
Q 019952 86 LHLPGNPPVKLDSQDLLQIG------DKEFYFL 112 (333)
Q Consensus 86 ~I~pGs~P~~L~sGDlIqIG------~t~f~Fl 112 (333)
+|.+.. ++.|++||+|+|| ..+|.|.
T Consensus 172 rI~~~~-~~~L~~GD~I~fG~s~r~~~~el~f~ 203 (205)
T 3elv_A 172 VIPGAR-YIELRSGDVLTLSEFEEDNDYELIFM 203 (205)
T ss_dssp ECCBTS-CEECCTTCEEESSSSGGGCSEEEEEE
T ss_pred ECCCCc-eeECCCCCEEEECCCCCCCCeEEEEE
Confidence 998764 6899999999999 4455553
No 29
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.22 E-value=3.4e-11 Score=98.95 Aligned_cols=81 Identities=14% Similarity=0.300 Sum_probs=66.4
Q ss_pred EEEe-ecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCCCCCCeecCCCC
Q 019952 22 EYYM-QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQD 100 (333)
Q Consensus 22 ey~L-~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~pGs~P~~L~sGD 100 (333)
.+.| ....++|||++.. .| .++.+||+|++|..+.+++.+.|.++|+|+|+|||+++.++. .+.|++||
T Consensus 16 ~I~L~~g~~v~iGR~p~t---~I------~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~-~~~L~~GD 85 (102)
T 3kt9_A 16 RIRLPHLEAVVIGRGPET---KI------TDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQ-EVKLQPGQ 85 (102)
T ss_dssp EEECCBTCEEEECSSTTT---CC------CCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTC-EEEECTTC
T ss_pred cEEcCCCCcEEeccCCcc---cc------ccCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCC-eEEeCCCC
Confidence 3444 4556789999963 33 368999999999999766778999999999999999999886 59999999
Q ss_pred EEEeCCeEEEEE
Q 019952 101 LLQIGDKEFYFL 112 (333)
Q Consensus 101 lIqIG~t~f~Fl 112 (333)
+|.|-.-.+.|.
T Consensus 86 ~l~Ll~~~~~~~ 97 (102)
T 3kt9_A 86 VLHMVNELYPYI 97 (102)
T ss_dssp CEEEETTEEEEE
T ss_pred EEEEccCCceEE
Confidence 999987555554
No 30
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.22 E-value=3.6e-11 Score=107.21 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=73.5
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC---CcEEEEeCCCCceEEcCEEeCCCCCCeecC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR---RRFALEVLGKNGCFVEGVLHLPGNPPVKLD 97 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~---~~F~LedLSkNGTfVNG~~I~pGs~P~~L~ 97 (333)
.-|+|....++|||......+||-| ....|+++||.|..+.++ +..+|...+.+.|||||++|. .|+.|+
T Consensus 84 l~y~L~~g~t~VGr~~~~~~~dI~L----~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~---~~~~L~ 156 (184)
T 4egx_A 84 LLYYIKDGITRVGREDGERRQDIVL----SGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT---EPSILR 156 (184)
T ss_dssp SEEECCSEEEEEECSSSSSCCSEEC----CSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECC---SCEECC
T ss_pred EEEEECCCcCcCCCCCcCCCCeEEE----CccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEcc---ccEEcC
Confidence 4699999999999987766789998 467999999999987532 346677777788999999995 379999
Q ss_pred CCCEEEeCCe-EEEEEecccc
Q 019952 98 SQDLLQIGDK-EFYFLLPVRS 117 (333)
Q Consensus 98 sGDlIqIG~t-~f~Fllp~~s 117 (333)
+||+|.||.. .|+|..|...
T Consensus 157 ~GDrI~lG~~h~Frfn~P~ea 177 (184)
T 4egx_A 157 SGNRIIMGKSHVFRFNHPEQA 177 (184)
T ss_dssp TTCEEEETTTEEEEEECHHHH
T ss_pred CCCEEEECCCCEEEECChHHH
Confidence 9999999975 5778766543
No 31
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.15 E-value=5.8e-11 Score=98.96 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=73.1
Q ss_pred eEEEEe---ccceEEEe--ecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEE
Q 019952 12 GFAKLQ---GEDFEYYM--QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVL 86 (333)
Q Consensus 12 a~AkL~---G~~~ey~L--~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~ 86 (333)
.++.|. +....+.| ....++|||++.. -| .++.+||+|++|..|..++.+.+.++|+|+|+|||+.
T Consensus 8 ~~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~t---~I------~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~ 78 (110)
T 2brf_A 8 GRLWLESPPGEAPPIFLPSDGQALVLGRGPLT---QV------TDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQE 78 (110)
T ss_dssp CEEEEECSTTSSCCEECCSTTCCEEECSBTTT---TB------CCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CB
T ss_pred cEEEEEeCCCCCCcEEeccCCCCEEEcCCCCc---cc------ccccceeeeEEEEEecCCCEEEEEEcccCCcEECCEE
Confidence 445554 44345777 5689999999953 23 3679999999999998778888999999999999999
Q ss_pred eCCCCCCeecCCCCEEEe--CCeEEEEEe
Q 019952 87 HLPGNPPVKLDSQDLLQI--GDKEFYFLL 113 (333)
Q Consensus 87 I~pGs~P~~L~sGDlIqI--G~t~f~Fll 113 (333)
+.++. .+.|++||.|.| |...|.+.+
T Consensus 79 l~k~~-~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 79 LKPGL-EGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CCTTC-EEEEETTCEEEEETTEEEEEEEE
T ss_pred cCCCC-EEEecCCCEEEEccCCeEEEEEe
Confidence 99987 699999999998 566666666
No 32
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.12 E-value=7.8e-11 Score=113.68 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=65.8
Q ss_pred eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecC---------CCcEEEEeC-CCCceEEcCEEeCCC
Q 019952 21 FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFT---------RRRFALEVL-GKNGCFVEGVLHLPG 90 (333)
Q Consensus 21 ~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~---------~~~F~LedL-SkNGTfVNG~~I~pG 90 (333)
.+|.|....++|||...+...+|-+ +++.|||+||+|.++.. ...++|+|+ |+|||||||+++...
T Consensus 14 kr~~L~pg~YlIGR~~~~~~~lI~i----dD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~~ 89 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSDDSSHIQV----ISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQN 89 (325)
T ss_dssp CCEEECSEEEEEESSCCCBTTEEEC----CCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCTT
T ss_pred eEEEecCCeEEECCCCCccCceeec----CCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCCc
Confidence 3577777779999998653334454 79999999999998621 246889997 699999999999643
Q ss_pred CCCeec-CCCCEEEeCCeEEEEEec
Q 019952 91 NPPVKL-DSQDLLQIGDKEFYFLLP 114 (333)
Q Consensus 91 s~P~~L-~sGDlIqIG~t~f~Fllp 114 (333)
...| .+||.|+||.....|++.
T Consensus 90 --~~~L~~dgd~I~fG~~~~~fRl~ 112 (325)
T 3huf_A 90 --GDSYKEKDLKIQLGKCPFTINAY 112 (325)
T ss_dssp --CEEECSSEEEEEETTCSSCEEEE
T ss_pred --eeeecCCCCEEEecCCcceEEEE
Confidence 3565 579999999755444443
No 33
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.09 E-value=2.5e-10 Score=94.11 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=66.2
Q ss_pred eccceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCc-eEEcCEEeCCCCCCee
Q 019952 17 QGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNG-CFVEGVLHLPGNPPVK 95 (333)
Q Consensus 17 ~G~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNG-TfVNG~~I~pGs~P~~ 95 (333)
.|++....-...-++|||.+.+ ++.| +++.|||.||.|.... .+.|.+ . |+|| +||||+++ + ++.
T Consensus 10 ~~~p~v~l~~~~~~rIGR~~~~---~l~L----ddpsVs~~HAti~~~~-~G~~~l-~-S~nGtVFVNGqrv--~--~~~ 75 (102)
T 3uv0_A 10 GGLPAILLKADTIYRIGRQKGL---EISI----ADESMELAHATACILR-RGVVRL-A-ALVGKIFVNDQEE--T--VVD 75 (102)
T ss_dssp TTSCCEECCTTCCEEEESSTTS---TEEC----CCTTSCTTCEEEEEEE-TTEEEE-E-ESSSCEEETTEEE--S--EEE
T ss_pred CCcccEEeecCcEEEEcCCCCC---cEEE----CCcccccceEEEEecC-CceEEE-E-eccCcEEECCEEe--e--eEE
Confidence 3555544445567899999874 5666 6899999999998875 455554 3 9999 69999999 3 589
Q ss_pred cCCCCE------EEeCCeEEEEEec
Q 019952 96 LDSQDL------LQIGDKEFYFLLP 114 (333)
Q Consensus 96 L~sGDl------IqIG~t~f~Fllp 114 (333)
|..||. |+||+++-++++.
T Consensus 76 I~~gDtI~g~v~lrFGnvea~l~~~ 100 (102)
T 3uv0_A 76 IGMENAVAGKVKLRFGNVEARLEFG 100 (102)
T ss_dssp ECGGGCBTTEEEEEETTEEEEEEEC
T ss_pred ccCCcccccEEEEEecCEEEEEEec
Confidence 999999 9999998888764
No 34
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.01 E-value=1.6e-10 Score=97.56 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=74.2
Q ss_pred ceEEEEe---ccceEEEe--ecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCE
Q 019952 11 AGFAKLQ---GEDFEYYM--QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGV 85 (333)
Q Consensus 11 ~a~AkL~---G~~~ey~L--~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~ 85 (333)
...+.|. +....+.| ....++|||++.. .| .++.+||+|++|..|..++.+.+.++|.|+|+|||+
T Consensus 14 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~t---~I------~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~ 84 (119)
T 1ujx_A 14 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLT---QV------TDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQ 84 (119)
T ss_dssp CCCEEEECCSSSCCCCCCCTTSCCEEESBBTTT---TB------CCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSS
T ss_pred cceEEEEeCCCCCCcEEeccCCCCEEEcCCCCc---cc------ccccccceeEEEEEecCCCEEEEEEcccCCcEECCE
Confidence 4555664 33234666 5689999999953 23 368999999999999877888899999999999999
Q ss_pred EeCCCCCCeecCCCCEEEe--CCeEEEEEecc
Q 019952 86 LHLPGNPPVKLDSQDLLQI--GDKEFYFLLPV 115 (333)
Q Consensus 86 ~I~pGs~P~~L~sGDlIqI--G~t~f~Fllp~ 115 (333)
.+.++. .+.|++||.|.| |...|.|.+..
T Consensus 85 ~l~k~~-~~~L~~GD~l~Ll~g~y~~~v~f~~ 115 (119)
T 1ujx_A 85 ELKPGL-SGSLSLGDVLYLVNGLYPLTLRWSG 115 (119)
T ss_dssp BCCTTC-EEEEETTCCCBCBTTBSCCEEEECC
T ss_pred EecCCC-EEEecCCCEEEEecCCeEEEEEecc
Confidence 999886 699999999994 55666665544
No 35
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.00 E-value=1.2e-09 Score=94.89 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=75.3
Q ss_pred ceEEEEe---ccceEEEe--ecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCE
Q 019952 11 AGFAKLQ---GEDFEYYM--QTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGV 85 (333)
Q Consensus 11 ~a~AkL~---G~~~ey~L--~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~ 85 (333)
..++.|. +....+.| ....++|||++.. .| .++.+||+|++|.+|..++.+.|..+|.|+|+|||+
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPet---~I------tDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~ 77 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLT---QV------TDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVH 77 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBTTT---TB------CCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTE
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCCcc---cc------ccccccceeEEEEEecCCCeEEEEEcccCCcEECCE
Confidence 4455665 33345777 5789999999952 23 367999999999999877788899999999999999
Q ss_pred EeCCCCCCeecCCCCEEEe--CCeEEEEEecc
Q 019952 86 LHLPGNPPVKLDSQDLLQI--GDKEFYFLLPV 115 (333)
Q Consensus 86 ~I~pGs~P~~L~sGDlIqI--G~t~f~Fllp~ 115 (333)
.+.++. .+.|++||.|.| |...|.|.+..
T Consensus 78 ~L~k~~-~~~L~~GD~LeLl~g~y~f~V~f~e 108 (143)
T 1yj5_C 78 ELKPGL-SGSLSLGDVLYLVNGLYPLTLRWEE 108 (143)
T ss_dssp ECCTTC-EEEECTTCEEESSSSCSEEEEEEEE
T ss_pred EecCCC-EEEecCCCEEEEecCCceEEEEecC
Confidence 999986 599999999995 55677777633
No 36
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.93 E-value=1.3e-09 Score=104.07 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=69.9
Q ss_pred cceEEEEeccc---eEEEeecCeEEECCCCCCCCeeeecCC-----CCCCCcccccceEEEEecCCC---cEEEEeCCCC
Q 019952 10 EAGFAKLQGED---FEYYMQTYSIILGRNSKKSTVDVDLSS-----LGGGMNISRHHARIFYDFTRR---RFALEVLGKN 78 (333)
Q Consensus 10 ~~a~AkL~G~~---~ey~L~~~sIvIGRss~~~~VDIDLs~-----lg~s~~ISR~HA~I~~d~~~~---~F~LedLSkN 78 (333)
...+++|.... ..+.+....++|||+.+ ||+.+.. ......|||+||+|+.+.... .|+|+|.|+|
T Consensus 7 ~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~---~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~n 83 (419)
T 3i6u_A 7 PAPWARLWALQDGFANLECVNDNYWFGRDKS---CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN 83 (419)
T ss_dssp CCCSEEEEECSSSSCCEEECSSEEEEESSTT---SSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSS
T ss_pred CCCceEeeecCCCCCceEecCCCEEecCCCc---cCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcC
Confidence 44577776442 35889999999999976 4555510 001146799999997753222 3899999999
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeCCe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQIGDK 107 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqIG~t 107 (333)
||||||..+.++. ..+|.++|.|.||.+
T Consensus 84 Gt~vn~~~~~~~~-~~~l~~~d~i~~~~~ 111 (419)
T 3i6u_A 84 GTFVNTELVGKGK-RRPLNNNSEIALSLS 111 (419)
T ss_dssp CEEETTEECCTTC-EEECCTTEEEEESST
T ss_pred CceECcccccCCC-cccCCCCCEeeeecc
Confidence 9999999998775 578999999999954
No 37
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.91 E-value=1.1e-08 Score=86.74 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=79.6
Q ss_pred EEEEeccc--eEEEeecCeEEECCCC-CCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeCCCCceEEcCEEeCC
Q 019952 13 FAKLQGED--FEYYMQTYSIILGRNS-KKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLP 89 (333)
Q Consensus 13 ~AkL~G~~--~ey~L~~~sIvIGRss-~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedLSkNGTfVNG~~I~p 89 (333)
+-+|.|.. .++.+....++||..+ . +|+.| .++.|||+||+|.... +.|.|. .++||+||||+++..
T Consensus 7 lrvlsG~~~G~~l~L~~~~~~IGs~~~~---~DLvL----~D~~Vs~~H~~L~~~~--~g~~L~-~s~ngt~vdG~~v~~ 76 (123)
T 4a0e_A 7 CRFYQGKHRGVEVELPHGRCVFGSDPLQ---SDIVL----SDSEIAPVHLVLMVDE--EGIRLT-DSAEPLLQEGLPVPL 76 (123)
T ss_dssp EEECSGGGTTCEEEECSEEEEEESCTTT---CSEEC----CCTTSCSSCEEEEEET--TEEEEE-EESSCCEETTEECCT
T ss_pred EEEecCCCCCcEEEcCCCcEEECCCCCC---CCEEE----eCCCccceeEEEEECC--CeEEEE-eccCCEEECCEEccc
Confidence 45566664 5788888999999998 6 47777 5899999999999974 688886 679999999999875
Q ss_pred CCCCeecCCCCEEEeCCeEEEEEeccccccC
Q 019952 90 GNPPVKLDSQDLLQIGDKEFYFLLPVRSILG 120 (333)
Q Consensus 90 Gs~P~~L~sGDlIqIG~t~f~Fllp~~si~~ 120 (333)
+ ..|..|+.|++|.+.|.|--..+....
T Consensus 77 ~---~~L~~g~~l~lG~~~l~~~~~~~~~p~ 104 (123)
T 4a0e_A 77 G---TLLRAGSCLEVGFLLWTFVAVGQPLPE 104 (123)
T ss_dssp T---CBCCTTSCEEETTEEEEEEETTSCCCS
T ss_pred c---cccCCCCEEEEccEEEEEEcCCCCccc
Confidence 4 389999999999999999888877665
No 38
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.31 E-value=8.8e-07 Score=81.34 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=59.0
Q ss_pred EEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCC--CcEEEEeCC-CCce-EEcCEEeCCCCCCeecC
Q 019952 22 EYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTR--RRFALEVLG-KNGC-FVEGVLHLPGNPPVKLD 97 (333)
Q Consensus 22 ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~--~~F~LedLS-kNGT-fVNG~~I~pGs~P~~L~ 97 (333)
.|.+....++|||+..+ ||.| ++. .||.|..+.+. +.|+|++++ +||+ ||||+++.. ++.|+
T Consensus 86 ~y~~~~~~itIG~~~~~---dI~l----~~~----~~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~---~~~L~ 151 (238)
T 1wv3_A 86 AYPSIQDTMTIGPNAYD---DMVI----QSL----MNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQ---LTNKA 151 (238)
T ss_dssp ECCSSCSEEEEESSTTS---SEEC----TTC----SSCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCS---SEEEE
T ss_pred EEecCCceEEEeCCCCC---eEEe----CCC----eeEEEEecccCcCCcEEEEEccCCCCCEEECCEEecc---ceecc
Confidence 35555569999998764 6666 233 25877775211 489999986 8995 999999953 57999
Q ss_pred -CCCEEEeCCeEEEEEe
Q 019952 98 -SQDLLQIGDKEFYFLL 113 (333)
Q Consensus 98 -sGDlIqIG~t~f~Fll 113 (333)
.||.|.||++.|.|.-
T Consensus 152 ~~GD~I~ig~~~~~~~~ 168 (238)
T 1wv3_A 152 YIGDHIYVEGIWLEVQA 168 (238)
T ss_dssp ETTCEEEETTEEEEECS
T ss_pred CCcCEEEECCEEEEEEC
Confidence 9999999999999864
No 39
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=50.71 E-value=11 Score=28.17 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=24.4
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeCCeEEEE
Q 019952 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYF 111 (333)
Q Consensus 78 NGTfVNG~~I~pGs~P~~L~sGDlIqIG~t~f~F 111 (333)
..++|||+.+.... ..+..||.|++++..+.+
T Consensus 46 G~V~VNG~~v~~~~--~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 46 GQVKVDGAVETRKR--CKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HHHEETTBCCCCSS--CCCCSSEEEEETTEEEEE
T ss_pred CEEEECCEEecCCC--CCCCCCCEEEECCEEEEE
Confidence 35999999873322 478899999999887754
No 40
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=50.46 E-value=13 Score=27.01 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=18.9
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-+.|||+.+... +.|++||.|.|
T Consensus 48 ~v~vNg~~v~~~---~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS---DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT---SEECTTCEEEE
T ss_pred EEEECCEECCCC---CCcCCCCEEEE
Confidence 488899988653 68999998877
No 41
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=50.00 E-value=12 Score=28.63 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=19.4
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
|..|||+.+.-. ++|++||.|+|=
T Consensus 43 ~AkVNG~~v~L~---~~L~~gd~VeIi 66 (78)
T 3hvz_A 43 GAKVDGRIVPID---YKVKTGEIIDVL 66 (78)
T ss_dssp EEEETTEEECTT---CBCCTTCBEEEE
T ss_pred EEEECCEEcCCC---cccCCCCEEEEE
Confidence 578899988653 689999988874
No 42
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=48.75 E-value=7.9 Score=31.00 Aligned_cols=27 Identities=15% Similarity=-0.113 Sum_probs=21.4
Q ss_pred CCCceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 76 GKNGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 76 SkNGTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
..+-+.|||+.+... +.|++||.|+|=
T Consensus 57 ~~~~V~Vng~~v~~d---~~L~dGDRVEIy 83 (97)
T 2hj1_A 57 STNKIGIFSRPIKLT---DVLKEGDRIEIY 83 (97)
T ss_dssp TTSEEEEEECSCCTT---CBCCTTCEEEEC
T ss_pred cccEEEEcCEECCCC---ccCCCCCEEEEE
Confidence 356689999988643 689999999985
No 43
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=42.18 E-value=21 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.6
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-++|||+.+... ++|++||.|.|
T Consensus 60 ~v~VN~~~v~~~---~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAALG---EATAAGDELAL 82 (89)
T ss_dssp EEEETTEECCTT---SBCCTTCEEEE
T ss_pred EEEECCEECCCC---cccCCCCEEEE
Confidence 488999998753 58999998875
No 44
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=40.87 E-value=7.1 Score=25.40 Aligned_cols=20 Identities=35% Similarity=0.812 Sum_probs=14.1
Q ss_pred cCCCCceehhhHHHHHHHHhcCc
Q 019952 250 CGPGEWMPMEKLYTELVEQYGDV 272 (333)
Q Consensus 250 cg~~ew~p~~klh~~l~~~~~~~ 272 (333)
||-|| +=|||.|.+.+|-.+
T Consensus 1 cggge---iwklheeflkkfeel 20 (32)
T 1m3w_A 1 CGGGE---IWKLHEEFLKKFEEL 20 (32)
T ss_dssp -CHHH---HHHHHHHHHHHHHHH
T ss_pred CCcch---HHHHHHHHHHHHHHH
Confidence 66665 559999999888643
No 45
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=40.24 E-value=22 Score=26.94 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=19.6
Q ss_pred CceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 78 NGCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 78 NGTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
..+.|||+.+.++ ..|+.||.|.|-
T Consensus 26 G~V~VNg~~~~~~---~~v~~gd~I~v~ 50 (92)
T 2k6p_A 26 GAVWLNGSCAKAS---KEVKAGDTISLH 50 (92)
T ss_dssp TCCEETTEECCTT---CBCCTTCEEEEC
T ss_pred CcEEECCEEcCCC---CCcCCCCEEEEE
Confidence 3499999987543 579999998875
No 46
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=39.55 E-value=26 Score=25.57 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=17.8
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
+.|||+.+... ..|++||.|.|
T Consensus 53 v~vN~~~v~~~---~~l~~gD~V~i 74 (81)
T 1fm0_D 53 AAVNQTLVSFD---HPLTDGDEVAF 74 (81)
T ss_dssp EEETTEECCTT---CBCCTTCEEEE
T ss_pred EEECCEECCCC---CCCCCCCEEEE
Confidence 88899988542 58999998876
No 47
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=39.33 E-value=19 Score=26.41 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=17.4
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-+.|||+.+... .++|++||.|.|
T Consensus 44 ~vavN~~~v~~~--~~~l~~gDeV~i 67 (74)
T 3rpf_C 44 AIALNDHLIDNL--NTPLKDGDVISL 67 (74)
T ss_dssp EEEESSSEECCT--TCCCCTTCEEEE
T ss_pred EEEECCEEcCCC--CcCCCCCCEEEE
Confidence 477888876432 368999998876
No 48
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=38.39 E-value=20 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.0
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+.|||+.+.+.+ ..+.|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 678888876531 1258999998876
No 49
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=37.61 E-value=13 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.9
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
-+.|||+.+.+. ..|++||.|.|
T Consensus 48 ~VavNg~~v~~~---~~L~dGD~V~i 70 (77)
T 1rws_A 48 IAKVNGKVVLED---DEVKDGDFVEV 70 (77)
T ss_dssp CEEETTEEECSS---SCCCSSCCCBC
T ss_pred EEEECCEECCCC---CCcCCCCEEEE
Confidence 488999998753 58999998876
No 50
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=37.39 E-value=29 Score=25.32 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=18.0
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
+.|||+.+.+. ..|++||.|.|
T Consensus 42 vavN~~~v~~~---~~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDE---EEIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTT---SBCCTTCEEEE
T ss_pred EEECCEECCCc---ccCCCCCEEEE
Confidence 77899988764 38999998876
No 51
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=33.60 E-value=20 Score=27.21 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=20.2
Q ss_pred ceEEcCEEeCCCCC-CeecCCCCEEEeC
Q 019952 79 GCFVEGVLHLPGNP-PVKLDSQDLLQIG 105 (333)
Q Consensus 79 GTfVNG~~I~pGs~-P~~L~sGDlIqIG 105 (333)
-+.|||+.+.+.+- .+.|++||.|+|=
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 37889999876420 1589999999884
No 52
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=32.70 E-value=25 Score=27.09 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=18.1
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
++|||+.+... ++|++||.|.|
T Consensus 70 v~VNg~~v~~~---~~L~dGDeV~i 91 (98)
T 1vjk_A 70 IAVNGRYVSWD---EELKDGDVVGV 91 (98)
T ss_dssp EEETTBCCCTT---CBCCTTCEEEE
T ss_pred EEECCEECCCC---CCCCCCCEEEE
Confidence 88899988642 68999998876
No 53
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=32.03 E-value=28 Score=27.14 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=18.7
Q ss_pred eEEcCEEeCCCCC-CeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNP-PVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~-P~~L~sGDlIqI 104 (333)
+.|||+.+.+.+- .+.|++||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 7789998865321 258999999887
No 54
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=31.51 E-value=38 Score=28.02 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=19.1
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
.+.|||+.+.++ ..|+.||.|.|-
T Consensus 35 ~V~VNG~~vk~s---~~V~~GD~I~I~ 58 (133)
T 1dm9_A 35 KVHYNGQRSKPS---KIVELNATLTLR 58 (133)
T ss_dssp CEEETTEECCTT---CBCCTTCEEEEE
T ss_pred cEEECCEEcCCC---CEeCCCCEEEEE
Confidence 499999988553 579999988774
No 55
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=31.36 E-value=17 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=19.2
Q ss_pred ceEEcCEEeCCCC-CCeecCCCCEEEeC
Q 019952 79 GCFVEGVLHLPGN-PPVKLDSQDLLQIG 105 (333)
Q Consensus 79 GTfVNG~~I~pGs-~P~~L~sGDlIqIG 105 (333)
-+.|||+.+.+.+ ..+.|++||.|+|=
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 3778998886531 12589999999873
No 56
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=29.36 E-value=87 Score=28.13 Aligned_cols=42 Identities=5% Similarity=0.070 Sum_probs=29.2
Q ss_pred ceEEEee-cCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEE
Q 019952 20 DFEYYMQ-TYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFAL 72 (333)
Q Consensus 20 ~~ey~L~-~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~L 72 (333)
-.++.+. ...++||+..++ +|.|. .. ..|++|.++.+ +.|.+
T Consensus 12 ~~~~~L~~~~~~tiG~~~~~---~itl~----~~---~~~i~l~~~~~-~~~~v 54 (238)
T 1wv3_A 12 LKMLNLRDGKTYTISEDERA---DITLK----SL---GEVIHLEQNNQ-GTWQA 54 (238)
T ss_dssp EEEEECCTTCCEEEESCTTS---SEECT----TC---CCCEEEEECTT-SCEEE
T ss_pred EEEEecCCCcEEEECCCccc---eEEec----CC---CccEEEEEccC-CeEEE
Confidence 3456666 578999988873 56552 11 78889988642 78887
No 57
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=29.35 E-value=23 Score=25.39 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=18.1
Q ss_pred eEEcCEEeCCCC-CCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGN-PPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs-~P~~L~sGDlIqI 104 (333)
+.|||+.+.+.+ ..+.|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 788999886421 0158999998876
No 58
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=26.26 E-value=47 Score=23.54 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=17.8
Q ss_pred ceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952 79 GCFVEGVLHLPGNPPVKLDSQDLLQIG 105 (333)
Q Consensus 79 GTfVNG~~I~pGs~P~~L~sGDlIqIG 105 (333)
++.|||+.+... .+|..||.|+|=
T Consensus 38 aa~vNg~lvdl~---~~L~~~~~Veiv 61 (73)
T 2kmm_A 38 GAKVNHKLVPLS---YVLNSGDQVEVL 61 (73)
T ss_dssp EEEETTEECCTT---CBCCSSSBEEEE
T ss_pred EEEECCEEeCCC---cCcCCCCEEEEE
Confidence 357899988653 589999977763
No 59
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=24.84 E-value=43 Score=27.01 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=20.0
Q ss_pred eEEcCEEeCCCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pGs~P~~L~sGDlIqI 104 (333)
..+||++...|..-+.|++||.|.|
T Consensus 71 ~~vng~~~~~Ga~~~~v~dGD~i~~ 95 (101)
T 3u7z_A 71 ITKGGEQVNTSADQTPVSDGDAFEL 95 (101)
T ss_dssp EEETTEECCSCGGGCBCCTTCEEEE
T ss_pred EEECCEEhhhchhheEecCCCEEEE
Confidence 3468998888766689999998765
No 60
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=23.76 E-value=40 Score=25.40 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=17.7
Q ss_pred eEEcCEEeCCC-CCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLPG-NPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~pG-s~P~~L~sGDlIqI 104 (333)
++|||+.+... ...++|++||.|.|
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEE
Confidence 78899988531 01268999998765
No 61
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=22.84 E-value=33 Score=26.63 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=19.4
Q ss_pred CCceEEcCEEeCC--CCCCeecCCCCEEEe
Q 019952 77 KNGCFVEGVLHLP--GNPPVKLDSQDLLQI 104 (333)
Q Consensus 77 kNGTfVNG~~I~p--Gs~P~~L~sGDlIqI 104 (333)
.+-+.|||+.+.. +. .++|++||.|.|
T Consensus 64 ~~~v~VNg~~v~~~~~~-~~~L~~gD~V~i 92 (99)
T 2l52_A 64 SINILINGNNIRHLEGL-ETLLKDSDEIGI 92 (99)
T ss_dssp SCEEEETTSCGGGTTST-TSCCCTTEEEEE
T ss_pred ccEEEECCEEccccCCC-CCCCCCCCEEEE
Confidence 3458999987742 22 368999998877
No 62
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=21.74 E-value=3.1e+02 Score=22.16 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhhccCCCCceehhhHHHHHHHHhcCccccccceeecccCCCCCCCCCCCchhHHHHHHhhCCCcEEEEee
Q 019952 237 DVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTR 316 (333)
Q Consensus 237 ~v~s~~~~~lsdlcg~~ew~p~~klh~~l~~~~~~~w~~~~v~~~l~~e~~~~~~~~~~pw~~l~~ll~kypehfvi~~~ 316 (333)
+++..|...+.+++.-..|+.+..+=+-|...|.+. -+|.| .. ..|..|++.|...|-|..+
T Consensus 21 ~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdF----DpRnY-----------Gy---~kLs~Li~a~~~~FEi~~r 82 (105)
T 2kpm_A 21 FPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDF----DSRLY-----------GY---KKLSDLVKARTDLFVTEER 82 (105)
T ss_dssp CCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTC----CGGGT-----------TC---SSHHHHHHHCTTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCC----Ccccc-----------Cc---ccHHHHHHhhCCcEEEEee
Confidence 456667777788888899999999999998887654 23333 11 2488899999999999988
Q ss_pred cCCceeE
Q 019952 317 SKGRVTL 323 (333)
Q Consensus 317 ~~~~~~~ 323 (333)
..+....
T Consensus 83 ~~~~~~~ 89 (105)
T 2kpm_A 83 QVPGSTQ 89 (105)
T ss_dssp ECTTCSS
T ss_pred cCCCCCc
Confidence 7665433
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=21.44 E-value=65 Score=26.92 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=21.4
Q ss_pred cchHHHhhhhhhHHHHHHHHHhhccCCCCceehh
Q 019952 226 DNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPME 259 (333)
Q Consensus 226 d~~~~~~~ee~~v~s~~~~~lsdlcg~~ew~p~~ 259 (333)
.+..-.|++|-|+++|| .||++||--.+
T Consensus 13 ~~~~e~Q~eElEaL~SI------Y~~~de~~v~d 40 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSM------FPNQGEVKLED 40 (154)
T ss_dssp HHHHHHHHHHHHHHHHH------CCSTTSEEESC
T ss_pred hhhHHHHHHHHHHHHHh------CCCCCeEEEec
Confidence 34455689999999987 78999996543
No 64
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=20.92 E-value=24 Score=28.66 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=17.9
Q ss_pred eEEcCEEeC--CCCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHL--PGNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~--pGs~P~~L~sGDlIqI 104 (333)
++|||+.+. .+- -++|++||.|.|
T Consensus 76 VlVN~~di~~l~gl-dt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGEL-DYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTT-TCBCCSSEEEEE
T ss_pred EEECCeeeeccCCc-CcCCCCCCEEEE
Confidence 888998653 232 479999998777
No 65
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=20.29 E-value=44 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=17.8
Q ss_pred eEEcCEEeCC--CCCCeecCCCCEEEe
Q 019952 80 CFVEGVLHLP--GNPPVKLDSQDLLQI 104 (333)
Q Consensus 80 TfVNG~~I~p--Gs~P~~L~sGDlIqI 104 (333)
+.|||+.+.. +. .++|++||.|.|
T Consensus 58 v~vN~~~v~~~~~~-~~~l~~gD~V~i 83 (90)
T 2g1e_A 58 ILVNGNNITSMKGL-DTEIKDDDKIDL 83 (90)
T ss_dssp EEESSSBGGGTCSS-SCBCCTTCEEEE
T ss_pred EEECCEEccccCCC-CcCCCCCCEEEE
Confidence 8889887752 11 368999998877
No 66
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=20.05 E-value=92 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCceEEcCEEeCCCCCCeecCCCC--EEEeCCeEEEEE
Q 019952 77 KNGCFVEGVLHLPGNPPVKLDSQD--LLQIGDKEFYFL 112 (333)
Q Consensus 77 kNGTfVNG~~I~pGs~P~~L~sGD--lIqIG~t~f~Fl 112 (333)
.+|++|||+++.... ..+..++ +|+.|..+|..+
T Consensus 393 ~ggv~vn~~~v~d~~--~~~~~~~~~~l~~GKk~~~~v 428 (432)
T 1h3f_A 393 NRGLRLDGEVLTDPM--LQVDLSRPRILQRGKDRFVRV 428 (432)
T ss_dssp TTCEEETTEECCCTT--CEEECSSCEEEEETTTEEEEE
T ss_pred hCCEEECCEEecCcc--ceecCCCcEEEEeCCeeEEEE
Confidence 468999999996432 4555555 899999888654
Done!