Query 019954
Match_columns 333
No_of_seqs 321 out of 1476
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.8 3.5E-19 1.2E-23 138.1 7.2 62 91-152 15-76 (80)
2 2dmt_A Homeobox protein BARH-l 99.8 5.4E-19 1.8E-23 137.6 8.0 62 91-152 15-76 (80)
3 2kt0_A Nanog, homeobox protein 99.8 5.2E-19 1.8E-23 138.5 7.3 62 91-152 20-81 (84)
4 1nk2_P Homeobox protein VND; h 99.8 5.3E-19 1.8E-23 136.7 7.0 65 92-156 8-72 (77)
5 2cue_A Paired box protein PAX6 99.8 1E-18 3.4E-23 136.1 8.5 63 92-154 6-68 (80)
6 2vi6_A Homeobox protein nanog; 99.8 2.8E-19 9.7E-24 132.6 5.0 61 92-152 2-62 (62)
7 2h1k_A IPF-1, pancreatic and d 99.8 5.9E-19 2E-23 131.4 6.5 59 93-151 3-61 (63)
8 2cra_A Homeobox protein HOX-B1 99.8 4.4E-19 1.5E-23 134.7 5.7 61 92-152 6-66 (70)
9 2dmu_A Homeobox protein goosec 99.8 9.4E-19 3.2E-23 132.8 7.3 61 92-152 6-66 (70)
10 2dmq_A LIM/homeobox protein LH 99.8 8.6E-19 2.9E-23 136.1 7.1 63 92-154 6-68 (80)
11 1puf_A HOX-1.7, homeobox prote 99.8 2.2E-18 7.6E-23 133.2 9.0 63 92-154 12-74 (77)
12 2e1o_A Homeobox protein PRH; D 99.8 1.3E-18 4.5E-23 132.1 7.4 61 92-152 6-66 (70)
13 2hdd_A Protein (engrailed home 99.8 8.1E-19 2.8E-23 129.7 6.1 58 93-150 3-60 (61)
14 2da2_A Alpha-fetoprotein enhan 99.8 7.6E-19 2.6E-23 133.1 5.9 61 92-152 6-66 (70)
15 3a01_A Homeodomain-containing 99.8 1.3E-18 4.4E-23 139.5 7.4 65 92-156 16-80 (93)
16 1ig7_A Homeotic protein MSX-1; 99.7 1.4E-18 4.7E-23 127.0 6.8 57 94-150 1-57 (58)
17 2dms_A Homeobox protein OTX2; 99.7 1.3E-18 4.5E-23 135.3 7.0 63 91-153 5-67 (80)
18 1fjl_A Paired protein; DNA-bin 99.7 1.6E-18 5.6E-23 135.1 7.5 62 91-152 16-77 (81)
19 1zq3_P PRD-4, homeotic bicoid 99.7 2E-18 6.7E-23 130.5 7.3 62 93-154 2-63 (68)
20 1wh5_A ZF-HD homeobox family p 99.7 1.2E-18 4E-23 136.3 6.0 60 91-150 15-78 (80)
21 2djn_A Homeobox protein DLX-5; 99.7 1.3E-18 4.6E-23 132.0 5.9 61 92-152 6-66 (70)
22 2da1_A Alpha-fetoprotein enhan 99.7 1.5E-18 5.2E-23 131.5 6.1 61 92-152 6-66 (70)
23 1ahd_P Antennapedia protein mu 99.7 1.4E-18 4.7E-23 131.5 5.7 61 93-153 2-62 (68)
24 2l7z_A Homeobox protein HOX-A1 99.7 2.7E-18 9.4E-23 131.5 7.2 62 91-152 5-66 (73)
25 2r5y_A Homeotic protein sex co 99.7 2E-18 6.9E-23 136.7 6.7 61 92-152 27-87 (88)
26 1bw5_A ISL-1HD, insulin gene e 99.7 1E-18 3.6E-23 131.0 4.7 61 92-152 2-62 (66)
27 1jgg_A Segmentation protein EV 99.7 2.2E-18 7.6E-23 126.9 6.2 58 94-151 2-59 (60)
28 2ecc_A Homeobox and leucine zi 99.7 2.2E-18 7.6E-23 134.0 6.4 59 95-153 5-63 (76)
29 1yz8_P Pituitary homeobox 2; D 99.7 1E-18 3.6E-23 131.9 4.3 62 92-153 2-63 (68)
30 1ftt_A TTF-1 HD, thyroid trans 99.7 2.1E-18 7.2E-23 130.4 5.7 61 93-153 2-62 (68)
31 3rkq_A Homeobox protein NKX-2. 99.7 3.4E-18 1.2E-22 124.3 6.6 57 93-149 2-58 (58)
32 1uhs_A HOP, homeodomain only p 99.7 3.8E-18 1.3E-22 130.2 7.1 59 94-152 2-61 (72)
33 2da4_A Hypothetical protein DK 99.7 1.7E-18 5.7E-23 134.7 5.1 61 92-152 7-71 (80)
34 1wh7_A ZF-HD homeobox family p 99.7 1.8E-18 6.3E-23 135.4 5.1 59 91-150 15-78 (80)
35 1b8i_A Ultrabithorax, protein 99.7 2.3E-18 8E-23 134.5 5.7 61 92-152 19-79 (81)
36 2m0c_A Homeobox protein arista 99.7 3.8E-18 1.3E-22 130.5 6.5 62 91-152 7-68 (75)
37 2k40_A Homeobox expressed in E 99.7 1.9E-18 6.5E-23 130.0 4.7 61 94-154 2-62 (67)
38 2da5_A Zinc fingers and homeob 99.7 3.6E-18 1.2E-22 131.6 6.3 59 94-152 8-66 (75)
39 2hi3_A Homeodomain-only protei 99.7 4.8E-18 1.7E-22 130.0 6.9 59 94-152 3-62 (73)
40 3a02_A Homeobox protein arista 99.7 4E-18 1.4E-22 125.6 5.5 57 96-152 2-58 (60)
41 3a03_A T-cell leukemia homeobo 99.7 5.5E-18 1.9E-22 123.4 6.2 54 98-151 2-55 (56)
42 1akh_A Protein (mating-type pr 99.7 4.5E-18 1.5E-22 125.4 5.1 58 92-149 4-61 (61)
43 1b72_A Protein (homeobox prote 99.7 6.9E-18 2.3E-22 136.0 6.5 62 92-153 33-94 (97)
44 3nar_A ZHX1, zinc fingers and 99.7 8.8E-18 3E-22 135.2 6.9 63 92-154 24-86 (96)
45 2dn0_A Zinc fingers and homeob 99.7 4.9E-18 1.7E-22 131.0 5.1 60 93-152 8-67 (76)
46 2ecb_A Zinc fingers and homeob 99.7 7.1E-18 2.4E-22 134.8 5.7 57 96-152 14-70 (89)
47 2cqx_A LAG1 longevity assuranc 99.7 6.2E-18 2.1E-22 129.8 4.5 58 94-151 9-67 (72)
48 2ly9_A Zinc fingers and homeob 99.7 1.2E-17 4E-22 127.8 6.0 60 93-152 6-65 (74)
49 1puf_B PRE-B-cell leukemia tra 99.7 1.3E-17 4.4E-22 127.4 6.2 62 94-155 2-66 (73)
50 1x2n_A Homeobox protein pknox1 99.7 1.8E-17 6.3E-22 126.6 7.0 62 92-153 6-70 (73)
51 1k61_A Mating-type protein alp 99.7 2.2E-17 7.6E-22 121.5 6.2 56 96-151 1-59 (60)
52 1b72_B Protein (PBX1); homeodo 99.7 3.2E-17 1.1E-21 129.1 7.4 62 94-155 2-66 (87)
53 2cuf_A FLJ21616 protein; homeo 99.7 3.8E-17 1.3E-21 131.2 7.3 63 91-153 5-82 (95)
54 1du6_A PBX1, homeobox protein 99.7 1.9E-17 6.4E-22 123.3 4.8 58 93-150 3-63 (64)
55 1le8_B Mating-type protein alp 99.7 2E-17 6.8E-22 129.8 5.2 64 93-156 2-68 (83)
56 2dmp_A Zinc fingers and homeob 99.7 5.4E-17 1.9E-21 129.1 7.3 58 95-152 15-72 (89)
57 2dmn_A Homeobox protein TGIF2L 99.7 6.5E-17 2.2E-21 127.0 7.0 63 92-154 6-71 (83)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 5.9E-17 2E-21 127.9 6.7 60 91-150 25-87 (87)
59 2l9r_A Homeobox protein NKX-3. 99.7 2.3E-17 7.9E-22 125.9 3.1 56 99-154 10-65 (69)
60 1au7_A Protein PIT-1, GHF-1; c 99.7 5.7E-17 1.9E-21 140.0 5.2 61 91-151 85-145 (146)
61 1e3o_C Octamer-binding transcr 99.7 6.2E-17 2.1E-21 141.6 5.2 61 91-151 99-159 (160)
62 3nau_A Zinc fingers and homeob 99.6 1.4E-16 4.8E-21 120.5 6.2 53 100-152 11-63 (66)
63 1x2m_A LAG1 longevity assuranc 99.6 6.6E-17 2.3E-21 121.8 4.0 50 102-151 9-59 (64)
64 2xsd_C POU domain, class 3, tr 99.6 8.8E-17 3E-21 141.4 5.1 63 91-153 97-159 (164)
65 2da6_A Hepatocyte nuclear fact 99.6 4.2E-16 1.4E-20 127.4 8.2 63 91-153 4-87 (102)
66 3d1n_I POU domain, class 6, tr 99.6 2.2E-16 7.7E-21 136.6 6.9 59 92-150 92-150 (151)
67 2e19_A Transcription factor 8; 99.6 2.4E-16 8.3E-21 118.3 5.0 54 98-151 8-61 (64)
68 1wi3_A DNA-binding protein SAT 99.6 4.9E-16 1.7E-20 118.1 6.4 58 92-149 6-64 (71)
69 3l1p_A POU domain, class 5, tr 99.6 4.6E-16 1.6E-20 135.5 6.7 60 92-151 95-154 (155)
70 1lfb_A Liver transcription fac 99.6 2.1E-16 7.3E-21 128.5 4.0 63 91-153 7-90 (99)
71 3k2a_A Homeobox protein MEIS2; 99.6 1.1E-15 3.7E-20 115.5 5.1 59 99-157 4-65 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 9.4E-16 3.2E-20 134.0 4.9 63 90-152 94-156 (164)
73 1ic8_A Hepatocyte nuclear fact 99.4 5.4E-14 1.8E-18 126.9 2.5 60 91-150 113-193 (194)
74 2da7_A Zinc finger homeobox pr 99.4 3.3E-13 1.1E-17 103.0 5.2 46 102-147 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 5.1E-13 1.7E-17 106.6 6.3 57 99-155 11-70 (89)
76 1mh3_A Maltose binding-A1 home 99.3 1.1E-12 3.7E-17 126.4 3.9 55 95-149 367-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 4.1E-12 1.4E-16 116.5 5.2 57 92-148 141-218 (221)
78 2nzz_A Penetratin conjugated G 98.9 8E-11 2.7E-15 79.3 -1.6 28 135-162 1-28 (37)
79 2ys9_A Homeobox and leucine zi 94.2 0.034 1.2E-06 42.1 3.3 40 104-143 17-56 (70)
80 1hjb_A Ccaat/enhancer binding 89.8 1 3.5E-05 35.3 7.0 47 144-193 28-74 (87)
81 1gd2_E Transcription factor PA 89.2 1.2 4E-05 33.6 6.7 40 154-193 28-67 (70)
82 1gu4_A CAAT/enhancer binding p 88.2 0.92 3.2E-05 34.8 5.7 46 144-192 28-73 (78)
83 1t2k_D Cyclic-AMP-dependent tr 88.0 2.4 8.1E-05 30.6 7.5 38 156-193 23-60 (61)
84 2jn6_A Protein CGL2762, transp 87.8 0.56 1.9E-05 36.0 4.3 43 97-143 3-46 (97)
85 2wt7_B Transcription factor MA 85.5 4.7 0.00016 31.8 8.5 63 131-193 17-86 (90)
86 2wt7_A Proto-oncogene protein 81.8 9.5 0.00033 27.6 8.3 38 156-193 24-61 (63)
87 2yy0_A C-MYC-binding protein; 78.9 2.8 9.5E-05 29.8 4.4 29 165-193 22-50 (53)
88 1ci6_A Transcription factor AT 78.6 9.2 0.00031 27.8 7.3 38 156-193 24-61 (63)
89 2dgc_A Protein (GCN4); basic d 78.2 3.9 0.00013 29.9 5.2 28 166-193 34-61 (63)
90 2glo_A Brinker CG9653-PA; prot 77.1 2.6 8.8E-05 29.5 3.9 45 97-142 3-47 (59)
91 2yy0_A C-MYC-binding protein; 76.3 2.8 9.5E-05 29.8 3.8 30 156-185 20-49 (53)
92 1jnm_A Proto-oncogene C-JUN; B 76.2 4.1 0.00014 29.4 4.8 35 158-192 25-59 (62)
93 1hlv_A CENP-B, major centromer 75.6 4.7 0.00016 32.0 5.6 51 95-148 3-53 (131)
94 1gd2_E Transcription factor PA 74.9 5.8 0.0002 29.7 5.5 51 138-189 20-70 (70)
95 2oxj_A Hybrid alpha/beta pepti 74.9 4.1 0.00014 26.4 3.9 27 167-193 6-32 (34)
96 2elh_A CG11849-PA, LD40883P; s 72.0 7.1 0.00024 29.4 5.5 43 95-142 18-60 (87)
97 3c3g_A Alpha/beta peptide with 71.0 7 0.00024 25.2 4.3 27 167-193 5-31 (33)
98 3c3f_A Alpha/beta peptide with 69.8 7.6 0.00026 25.1 4.3 27 167-193 6-32 (34)
99 1kd8_B GABH BLL, GCN4 acid bas 68.6 9.7 0.00033 25.0 4.6 29 166-194 5-33 (36)
100 3m48_A General control protein 67.8 6.8 0.00023 25.3 3.7 27 167-193 5-31 (33)
101 3s4r_A Vimentin; alpha-helix, 67.7 20 0.00069 28.0 7.4 57 135-192 37-93 (93)
102 1kd8_A GABH AIV, GCN4 acid bas 65.3 14 0.00048 24.2 4.9 29 167-195 6-34 (36)
103 2jee_A YIIU; FTSZ, septum, coi 65.1 26 0.00088 27.0 7.3 41 153-193 25-65 (81)
104 3hug_A RNA polymerase sigma fa 63.1 13 0.00044 27.9 5.4 46 100-150 38-83 (92)
105 3iv1_A Tumor susceptibility ge 61.7 44 0.0015 25.5 8.0 52 143-194 13-64 (78)
106 3gp4_A Transcriptional regulat 61.3 68 0.0023 26.4 11.4 80 96-190 37-116 (142)
107 1t2k_D Cyclic-AMP-dependent tr 61.1 32 0.0011 24.4 6.9 31 163-193 23-53 (61)
108 1gu4_A CAAT/enhancer binding p 60.8 40 0.0014 25.6 7.7 36 160-195 34-69 (78)
109 2bni_A General control protein 60.4 13 0.00045 24.1 4.0 27 167-193 6-32 (34)
110 2hy6_A General control protein 59.4 16 0.00055 23.6 4.3 27 167-193 6-32 (34)
111 1tc3_C Protein (TC3 transposas 58.9 10 0.00035 23.9 3.6 40 99-143 5-44 (51)
112 3m9b_A Proteasome-associated A 58.4 16 0.00053 33.8 5.9 38 152-189 58-95 (251)
113 1jko_C HIN recombinase, DNA-in 57.3 4.7 0.00016 26.1 1.7 42 99-145 5-46 (52)
114 2wuj_A Septum site-determining 56.8 11 0.00039 26.7 3.8 29 164-192 29-57 (57)
115 1s7o_A Hypothetical UPF0122 pr 56.2 43 0.0015 26.5 7.6 47 99-150 22-68 (113)
116 1xsv_A Hypothetical UPF0122 pr 54.1 41 0.0014 26.5 7.2 47 99-150 25-71 (113)
117 1uo4_A General control protein 54.1 19 0.00065 23.3 4.0 27 167-193 6-32 (34)
118 1dh3_A Transcription factor CR 53.3 36 0.0012 24.0 5.9 28 165-192 25-52 (55)
119 2o8x_A Probable RNA polymerase 52.8 9.9 0.00034 26.4 2.9 47 99-150 15-61 (70)
120 3gpv_A Transcriptional regulat 52.3 62 0.0021 26.7 8.3 79 96-196 51-129 (148)
121 3w03_C DNA repair protein XRCC 52.1 32 0.0011 30.3 6.6 35 158-192 148-182 (184)
122 2jee_A YIIU; FTSZ, septum, coi 51.9 67 0.0023 24.6 7.6 36 154-189 33-68 (81)
123 1r8e_A Multidrug-efflux transp 51.8 46 0.0016 29.5 7.9 35 97-144 42-76 (278)
124 3hnw_A Uncharacterized protein 50.6 75 0.0026 26.4 8.5 45 152-196 86-130 (138)
125 3m91_A Proteasome-associated A 50.5 48 0.0016 23.2 6.1 34 160-193 14-47 (51)
126 2wt7_A Proto-oncogene protein 49.9 68 0.0023 22.9 7.2 32 162-193 23-54 (63)
127 3c57_A Two component transcrip 48.5 19 0.00065 27.3 4.1 47 99-151 27-73 (95)
128 1ci6_A Transcription factor AT 47.5 59 0.002 23.3 6.4 29 164-192 25-53 (63)
129 1p4w_A RCSB; solution structur 47.5 37 0.0013 26.3 5.8 48 97-150 32-79 (99)
130 3mzy_A RNA polymerase sigma-H 46.9 29 0.00099 27.4 5.2 46 99-150 109-154 (164)
131 1go4_E MAD1 (mitotic arrest de 46.7 32 0.0011 27.4 5.3 32 163-194 13-44 (100)
132 1hjb_A Ccaat/enhancer binding 46.6 40 0.0014 26.1 5.7 36 161-196 35-70 (87)
133 1fse_A GERE; helix-turn-helix 46.3 31 0.0011 24.0 4.8 47 98-150 10-56 (74)
134 1go4_E MAD1 (mitotic arrest de 46.2 30 0.001 27.6 5.0 32 156-187 13-44 (100)
135 3s9g_A Protein hexim1; cyclin 45.9 36 0.0012 27.2 5.3 23 169-191 65-87 (104)
136 1je8_A Nitrate/nitrite respons 45.8 36 0.0012 25.0 5.2 47 98-150 20-66 (82)
137 1x3u_A Transcriptional regulat 45.6 23 0.00077 25.2 4.0 45 100-150 17-61 (79)
138 3mq7_A Bone marrow stromal ant 45.0 53 0.0018 27.0 6.3 58 132-189 41-98 (121)
139 1jnm_A Proto-oncogene C-JUN; B 44.6 32 0.0011 24.5 4.6 32 162-193 22-53 (62)
140 1p9i_A Cortexillin I/GCN4 hybr 44.4 36 0.0012 21.0 4.0 24 169-192 6-29 (31)
141 3m91_A Proteasome-associated A 43.9 67 0.0023 22.5 6.0 37 152-188 13-49 (51)
142 3a5t_A Transcription factor MA 43.9 1.7 5.7E-05 35.4 -2.7 60 131-190 27-93 (107)
143 2wq1_A General control protein 42.1 40 0.0014 21.7 4.1 26 168-193 6-31 (33)
144 1a93_A Coiled coil, LZ, MYC pr 41.4 41 0.0014 21.8 4.1 28 166-193 4-31 (34)
145 2p7v_B Sigma-70, RNA polymeras 41.0 27 0.00091 24.5 3.7 51 99-150 5-55 (68)
146 2v66_B Nuclear distribution pr 40.9 1.3E+02 0.0045 24.3 8.2 46 148-193 10-59 (111)
147 1nkp_B MAX protein, MYC proto- 40.8 98 0.0034 23.0 7.1 28 166-193 51-78 (83)
148 2fxo_A Myosin heavy chain, car 40.6 1.2E+02 0.004 24.6 8.0 52 145-196 73-124 (129)
149 2rn7_A IS629 ORFA; helix, all 40.6 32 0.0011 26.2 4.4 46 97-142 4-52 (108)
150 3mq7_A Bone marrow stromal ant 39.8 91 0.0031 25.6 7.0 39 155-193 71-109 (121)
151 2lv7_A Calcium-binding protein 37.9 1.3E+02 0.0044 22.7 8.2 47 96-142 26-79 (100)
152 3i5g_B Myosin regulatory light 37.3 46 0.0016 26.9 5.1 41 95-135 5-50 (153)
153 1ku3_A Sigma factor SIGA; heli 36.7 47 0.0016 23.5 4.5 50 99-149 10-59 (73)
154 2rgt_A Fusion of LIM/homeobox 36.7 2.1 7.2E-05 36.3 -3.5 29 92-120 135-163 (169)
155 1deb_A APC protein, adenomatou 36.7 64 0.0022 22.7 4.8 24 164-187 5-28 (54)
156 2rnj_A Response regulator prot 36.6 44 0.0015 24.8 4.5 46 99-150 29-74 (91)
157 1nlw_A MAD protein, MAX dimeri 36.5 52 0.0018 24.8 4.8 29 165-193 50-78 (80)
158 2eqb_B RAB guanine nucleotide 36.4 1.4E+02 0.0047 23.7 7.4 18 174-191 45-62 (97)
159 1no4_A Late, head morphogenesi 35.9 1.4E+02 0.0047 23.0 7.0 47 152-198 30-76 (97)
160 3oja_B Anopheles plasmodium-re 35.9 1E+02 0.0035 30.4 8.3 16 168-183 536-551 (597)
161 1rp3_A RNA polymerase sigma fa 35.2 28 0.00095 29.5 3.5 46 100-150 188-233 (239)
162 1iuf_A Centromere ABP1 protein 35.1 60 0.0021 26.5 5.5 48 94-144 6-60 (144)
163 1tty_A Sigma-A, RNA polymerase 35.1 47 0.0016 24.5 4.4 50 100-150 19-68 (87)
164 3hnw_A Uncharacterized protein 34.7 1.5E+02 0.0052 24.5 7.9 45 152-196 79-123 (138)
165 2r2v_A GCN4 leucine zipper; co 34.3 69 0.0024 20.7 4.3 26 168-193 7-32 (34)
166 3twe_A Alpha4H; unknown functi 33.8 56 0.0019 19.6 3.5 22 172-193 4-25 (27)
167 2x7l_M HIV REV; nuclear export 33.7 26 0.0009 28.6 2.8 35 105-153 15-49 (115)
168 3lph_A Protein REV; helix-loop 33.5 19 0.00066 27.1 1.8 36 105-154 18-53 (72)
169 1or7_A Sigma-24, RNA polymeras 33.4 50 0.0017 27.1 4.7 46 100-150 141-186 (194)
170 2xi8_A Putative transcription 33.1 22 0.00075 23.9 2.0 23 123-145 17-39 (66)
171 2oto_A M protein; helical coil 33.1 1.8E+02 0.0063 24.0 8.3 19 142-160 23-41 (155)
172 1uii_A Geminin; human, DNA rep 32.9 1E+02 0.0035 23.8 5.9 30 163-192 47-76 (83)
173 3v86_A De novo design helix; c 32.4 45 0.0015 20.0 2.9 14 177-190 8-21 (27)
174 2v71_A Nuclear distribution pr 31.9 1.8E+02 0.006 25.6 8.2 49 144-192 59-111 (189)
175 3s9g_A Protein hexim1; cyclin 31.6 1.4E+02 0.0049 23.8 6.7 23 158-180 68-90 (104)
176 3oja_A Leucine-rich immune mol 31.6 1.3E+02 0.0045 29.0 8.1 31 165-195 438-468 (487)
177 2a6c_A Helix-turn-helix motif; 31.4 30 0.001 25.1 2.7 23 123-145 34-56 (83)
178 3b7h_A Prophage LP1 protein 11 31.4 24 0.00082 24.7 2.1 23 123-145 23-45 (78)
179 2r1j_L Repressor protein C2; p 31.2 21 0.00072 24.1 1.7 24 123-146 21-44 (68)
180 2b5a_A C.BCLI; helix-turn-heli 31.2 34 0.0012 23.8 2.9 23 123-145 26-48 (77)
181 3ulq_B Transcriptional regulat 31.0 72 0.0025 24.0 4.9 46 97-148 27-72 (90)
182 3m9b_A Proteasome-associated A 30.7 57 0.0019 30.1 4.9 42 154-195 53-94 (251)
183 3bd1_A CRO protein; transcript 29.8 24 0.00083 25.2 1.9 23 123-145 14-36 (79)
184 2v4h_A NF-kappa-B essential mo 29.6 1.9E+02 0.0065 23.4 7.3 38 156-193 63-100 (110)
185 2jpc_A SSRB; DNA binding prote 29.4 36 0.0012 22.9 2.7 27 124-150 17-43 (61)
186 1wle_A Seryl-tRNA synthetase; 29.4 1.4E+02 0.0048 29.9 8.0 67 135-201 71-148 (501)
187 3qq6_A HTH-type transcriptiona 29.2 28 0.00094 25.1 2.1 21 123-143 26-46 (78)
188 1zug_A Phage 434 CRO protein; 28.9 23 0.00079 24.2 1.6 24 123-146 19-42 (71)
189 3he5_B Synzip2; heterodimeric 28.5 1.4E+02 0.0048 20.3 6.5 26 168-193 23-48 (52)
190 3bs3_A Putative DNA-binding pr 27.7 37 0.0013 23.5 2.6 24 123-146 26-49 (76)
191 1dh3_A Transcription factor CR 27.7 78 0.0027 22.2 4.2 29 157-185 24-52 (55)
192 4b4t_K 26S protease regulatory 27.5 73 0.0025 31.2 5.5 43 143-185 44-86 (428)
193 2pmy_A RAS and EF-hand domain- 27.5 39 0.0013 24.6 2.7 45 98-142 19-68 (91)
194 3hh0_A Transcriptional regulat 27.4 2.3E+02 0.0078 23.2 7.8 36 96-144 39-74 (146)
195 1fi6_A EH domain protein REPS1 27.4 55 0.0019 24.0 3.6 43 100-142 3-50 (92)
196 1adr_A P22 C2 repressor; trans 27.0 27 0.00093 24.2 1.7 24 123-146 21-44 (76)
197 3t76_A VANU, transcriptional r 26.9 37 0.0013 25.7 2.5 37 123-161 40-76 (88)
198 2v4h_A NF-kappa-B essential mo 26.4 2.4E+02 0.0081 22.8 7.3 45 149-193 63-107 (110)
199 4h22_A Leucine-rich repeat fli 26.4 2.1E+02 0.0071 22.9 6.9 51 146-196 35-85 (103)
200 3w03_C DNA repair protein XRCC 25.9 1.3E+02 0.0044 26.4 6.1 41 154-194 137-177 (184)
201 2dq0_A Seryl-tRNA synthetase; 25.7 1.7E+02 0.0057 28.9 7.7 65 137-201 34-101 (455)
202 3omt_A Uncharacterized protein 25.4 43 0.0015 23.3 2.5 23 123-145 24-46 (73)
203 2kpj_A SOS-response transcript 25.3 39 0.0013 24.9 2.4 24 123-146 25-48 (94)
204 3qne_A Seryl-tRNA synthetase, 25.1 5.1E+02 0.018 25.8 11.2 65 137-201 36-103 (485)
205 1r69_A Repressor protein CI; g 24.9 31 0.0011 23.4 1.6 24 123-146 17-40 (69)
206 2j5u_A MREC protein; bacterial 24.9 55 0.0019 29.7 3.8 36 160-195 24-62 (255)
207 1q06_A Transcriptional regulat 24.7 2.7E+02 0.0092 22.3 8.8 36 97-145 36-71 (135)
208 1u78_A TC3 transposase, transp 24.2 79 0.0027 24.5 4.2 42 98-144 5-46 (141)
209 2wuj_A Septum site-determining 24.1 34 0.0011 24.2 1.7 35 150-184 22-56 (57)
210 2k27_A Paired box protein PAX- 24.0 1.2E+02 0.0042 24.4 5.5 56 82-142 8-63 (159)
211 2vz4_A Tipal, HTH-type transcr 23.9 2.4E+02 0.0083 21.5 7.7 35 96-143 36-70 (108)
212 1t6f_A Geminin; coiled-coil, c 23.8 1.1E+02 0.0038 20.0 3.9 12 177-188 22-33 (37)
213 1y7y_A C.AHDI; helix-turn-heli 23.7 34 0.0012 23.5 1.7 23 123-145 29-51 (74)
214 3oa7_A Head morphogenesis prot 23.0 1.5E+02 0.005 26.5 5.9 39 152-190 34-72 (206)
215 1nkp_A C-MYC, MYC proto-oncoge 22.9 1.4E+02 0.0046 22.8 5.1 28 166-193 56-83 (88)
216 3ilw_A DNA gyrase subunit A; D 22.5 3.6E+02 0.012 26.9 9.4 74 120-193 385-461 (470)
217 2cqr_A RSGI RUH-043, DNAJ homo 22.3 2E+02 0.0069 21.1 5.8 43 97-139 18-61 (73)
218 2wiu_B HTH-type transcriptiona 22.2 46 0.0016 23.8 2.2 23 123-145 28-50 (88)
219 1wt6_A Myotonin-protein kinase 22.1 2.7E+02 0.0092 21.3 6.6 20 174-193 50-69 (81)
220 1c07_A Protein (epidermal grow 22.0 68 0.0023 23.7 3.2 43 100-142 4-51 (95)
221 1wlq_A Geminin; coiled-coil; 2 21.9 1.7E+02 0.0059 22.5 5.4 27 164-190 40-66 (83)
222 2q1z_A RPOE, ECF SIGE; ECF sig 21.8 35 0.0012 27.8 1.6 46 100-150 136-181 (184)
223 3gyk_A 27KDA outer membrane pr 21.7 2.1E+02 0.007 22.9 6.5 43 106-148 86-128 (175)
224 3kz3_A Repressor protein CI; f 21.7 39 0.0013 24.1 1.7 24 123-146 28-51 (80)
225 3cec_A Putative antidote prote 21.6 2.1E+02 0.0073 21.1 6.1 23 123-145 34-56 (104)
226 2q0o_A Probable transcriptiona 21.3 90 0.0031 27.1 4.3 48 97-150 173-220 (236)
227 2eqb_B RAB guanine nucleotide 21.3 1.1E+02 0.0037 24.3 4.3 27 157-183 7-33 (97)
228 1a93_B MAX protein, coiled coi 21.3 1.6E+02 0.0053 19.1 4.2 18 173-190 11-28 (34)
229 1u78_A TC3 transposase, transp 21.2 1.1E+02 0.0038 23.6 4.5 44 99-146 60-105 (141)
230 2x48_A CAG38821; archeal virus 21.0 45 0.0015 22.0 1.8 36 102-142 18-53 (55)
231 1nkp_A C-MYC, MYC proto-oncoge 21.0 1.4E+02 0.0048 22.7 4.8 32 158-189 55-86 (88)
232 2zvf_A Alanyl-tRNA synthetase; 21.0 1.6E+02 0.0056 24.2 5.8 39 158-196 21-59 (171)
233 2wt7_B Transcription factor MA 20.9 2.1E+02 0.0072 22.2 5.8 50 139-188 37-88 (90)
234 1nlw_A MAD protein, MAX dimeri 20.8 1.4E+02 0.0049 22.3 4.8 29 159-187 51-79 (80)
235 3bdn_A Lambda repressor; repre 20.8 36 0.0012 29.4 1.6 24 122-145 32-55 (236)
236 1ses_A Seryl-tRNA synthetase; 20.6 2.1E+02 0.0073 27.7 7.2 65 137-201 31-96 (421)
237 3q4f_C DNA repair protein XRCC 20.5 1.2E+02 0.004 26.7 4.8 32 153-184 152-183 (186)
238 2k9q_A Uncharacterized protein 20.5 57 0.002 22.9 2.4 23 123-145 18-40 (77)
239 2ve7_C Kinetochore protein NUF 20.4 62 0.0021 29.5 3.1 38 156-193 142-179 (250)
240 3pvv_A Chromosomal replication 20.2 86 0.0029 24.6 3.6 24 172-195 75-98 (101)
241 1nkp_B MAX protein, MYC proto- 20.2 1.3E+02 0.0044 22.3 4.4 24 163-186 55-78 (83)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=138.06 Aligned_cols=62 Identities=24% Similarity=0.450 Sum_probs=58.0
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.+++++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 35667788899999999999999999999999999999999999999999999999999864
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-19 Score=137.63 Aligned_cols=62 Identities=37% Similarity=0.558 Sum_probs=57.7
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.+.+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 35567777899999999999999999999999999999999999999999999999999854
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-19 Score=138.53 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=58.0
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.+++++|++|+..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 35667788899999999999999999999999999999999999999999999999999864
No 4
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=5.3e-19 Score=136.73 Aligned_cols=65 Identities=34% Similarity=0.459 Sum_probs=59.6
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 156 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke 156 (333)
+++++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+..+.
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 45666778999999999999999999999999999999999999999999999999999776543
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1e-18 Score=136.10 Aligned_cols=63 Identities=27% Similarity=0.536 Sum_probs=58.9
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 456778889999999999999999999999999999999999999999999999999987644
No 6
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.76 E-value=2.8e-19 Score=132.59 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=53.4
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.++++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3567788899999999999999999999999999999999999999999999999999853
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=5.9e-19 Score=131.40 Aligned_cols=59 Identities=36% Similarity=0.624 Sum_probs=55.3
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
.+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 56778889999999999999999999999999999999999999999999999999985
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=4.4e-19 Score=134.71 Aligned_cols=61 Identities=25% Similarity=0.472 Sum_probs=57.6
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4667788899999999999999999999999999999999999999999999999999854
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.4e-19 Score=132.75 Aligned_cols=61 Identities=28% Similarity=0.544 Sum_probs=57.7
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..++..||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4567788899999999999999999999999999999999999999999999999999864
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-19 Score=136.11 Aligned_cols=63 Identities=24% Similarity=0.481 Sum_probs=58.9
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
..+++|++||..|+.+||..|..++||+..++..||.+|||+++||+|||||||+|+|++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999999999999999999999997643
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=2.2e-18 Score=133.20 Aligned_cols=63 Identities=37% Similarity=0.494 Sum_probs=58.6
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+....
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 456778889999999999999999999999999999999999999999999999999987543
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-18 Score=132.08 Aligned_cols=61 Identities=43% Similarity=0.657 Sum_probs=57.4
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567788899999999999999999999999999999999999999999999999999864
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=8.1e-19 Score=129.72 Aligned_cols=58 Identities=31% Similarity=0.611 Sum_probs=53.0
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
++++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4677888999999999999999999999999999999999999999999999999997
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-19 Score=133.12 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=57.6
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4667888899999999999999999999999999999999999999999999999999854
No 15
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=1.3e-18 Score=139.53 Aligned_cols=65 Identities=32% Similarity=0.559 Sum_probs=59.5
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 156 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke 156 (333)
+++++|++||..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+|+...+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999776544
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=126.99 Aligned_cols=57 Identities=33% Similarity=0.530 Sum_probs=54.8
Q ss_pred CCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467888999999999999999999999999999999999999999999999999986
No 17
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.3e-18 Score=135.33 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=58.7
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
.+.+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 356777888999999999999999999999999999999999999999999999999998654
No 18
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=1.6e-18 Score=135.07 Aligned_cols=62 Identities=27% Similarity=0.478 Sum_probs=57.5
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.+++++|++|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 35567777899999999999999999999999999999999999999999999999999865
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=2e-18 Score=130.52 Aligned_cols=62 Identities=32% Similarity=0.463 Sum_probs=57.9
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
.+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46778889999999999999999999999999999999999999999999999999986543
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=1.2e-18 Score=136.35 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=56.3
Q ss_pred cCCCCCCcccChHHHHHHHhhhhc----cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEV----ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~----~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
..++|+|+.||.+|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 356677888999999999999999 999999999999999999999999999999999885
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=132.01 Aligned_cols=61 Identities=30% Similarity=0.468 Sum_probs=57.4
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4567788899999999999999999999999999999999999999999999999999854
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=131.48 Aligned_cols=61 Identities=23% Similarity=0.427 Sum_probs=57.6
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4667788899999999999999999999999999999999999999999999999999854
No 23
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=1.4e-18 Score=131.49 Aligned_cols=61 Identities=38% Similarity=0.640 Sum_probs=57.4
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
++++|++||..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4677888999999999999999999999999999999999999999999999999998653
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=2.7e-18 Score=131.52 Aligned_cols=62 Identities=27% Similarity=0.458 Sum_probs=57.9
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
...+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999999854
No 25
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=2e-18 Score=136.66 Aligned_cols=61 Identities=38% Similarity=0.653 Sum_probs=55.0
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+.+
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4667788899999999999999999999999999999999999999999999999999853
No 26
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1e-18 Score=131.04 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=57.3
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
+.+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3567788899999999999999999999999999999999999999999999999999864
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=2.2e-18 Score=126.93 Aligned_cols=58 Identities=36% Similarity=0.535 Sum_probs=55.0
Q ss_pred CCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678889999999999999999999999999999999999999999999999999974
No 28
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.2e-18 Score=133.97 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 95 rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
++|++||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56777999999999999999999999999999999999999999999999999998654
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=1e-18 Score=131.90 Aligned_cols=62 Identities=27% Similarity=0.523 Sum_probs=58.1
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
.++++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45677888999999999999999999999999999999999999999999999999998653
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=2.1e-18 Score=130.36 Aligned_cols=61 Identities=31% Similarity=0.486 Sum_probs=57.3
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
++++|++||..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4567788999999999999999999999999999999999999999999999999998653
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=124.28 Aligned_cols=57 Identities=37% Similarity=0.483 Sum_probs=54.3
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 149 (333)
++++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 457788899999999999999999999999999999999999999999999999986
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=3.8e-18 Score=130.19 Aligned_cols=59 Identities=31% Similarity=0.570 Sum_probs=55.7
Q ss_pred CCCCcccChHHHHHHHhhhhc-cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.++|++||..|+.+||..|.. ++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 357888999999999999996 99999999999999999999999999999999999865
No 33
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=134.74 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=57.3
Q ss_pred CCCCCCcccChHHHHHHHhhhhcc----CCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVE----NKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~----~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
+++++|++||.+|+.+||..|..+ +||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456777889999999999999999 9999999999999999999999999999999999854
No 34
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=1.8e-18 Score=135.44 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=55.0
Q ss_pred cCCCCCCcccChHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
..++|+|+.||.+|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3567778889999999999 7999 999999999999999999999999999999999985
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.73 E-value=2.3e-18 Score=134.52 Aligned_cols=61 Identities=36% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.++++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4567788899999999999999999999999999999999999999999999999999854
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=130.46 Aligned_cols=62 Identities=31% Similarity=0.507 Sum_probs=57.9
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.++++.|++|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999999999999864
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=129.99 Aligned_cols=61 Identities=33% Similarity=0.498 Sum_probs=57.5
Q ss_pred CCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5678889999999999999999999999999999999999999999999999999987544
No 38
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=131.59 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=55.7
Q ss_pred CCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35677899999999999999999999999999999999999999999999999999865
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=4.8e-18 Score=130.04 Aligned_cols=59 Identities=29% Similarity=0.527 Sum_probs=55.7
Q ss_pred CCCCcccChHHHHHHHhhhhc-cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
+++|++||..|+.+||..|.. ++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999995 99999999999999999999999999999999999865
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=4e-18 Score=125.56 Aligned_cols=57 Identities=32% Similarity=0.586 Sum_probs=50.6
Q ss_pred CCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367899999999999999999999999999999999999999999999999999864
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=5.5e-18 Score=123.41 Aligned_cols=54 Identities=35% Similarity=0.611 Sum_probs=51.0
Q ss_pred cccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 98 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 98 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
+.||..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 469999999999999999999999999999999999999999999999999984
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=4.5e-18 Score=125.44 Aligned_cols=58 Identities=34% Similarity=0.620 Sum_probs=48.6
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 149 (333)
+.+++|++|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4556677899999999999999999999999999999999999999999999999986
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=6.9e-18 Score=135.98 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=55.7
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
..+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 46677888999999999999999999999999999999999999999999999999998653
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=8.8e-18 Score=135.21 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=57.0
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 345678889999999999999999999999999999999999999999999999999997644
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-18 Score=130.96 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=56.3
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+.|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 345688899999999999999999999999999999999999999999999999999864
No 46
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=7.1e-18 Score=134.80 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=53.8
Q ss_pred CCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
+.++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 344899999999999999999999999999999999999999999999999999854
No 47
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=6.2e-18 Score=129.76 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=54.5
Q ss_pred CCCCcccChHHHHHHHhhh-hccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSF-EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
.++|++++.+|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3567779999999999999 999999999999999999999999999999999999974
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=127.85 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=56.7
Q ss_pred CCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
.++.|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 456788899999999999999999999999999999999999999999999999999865
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=1.3e-17 Score=127.42 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=57.8
Q ss_pred CCCCcccChHHHHHHHhhh---hccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 155 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~k 155 (333)
+++|++|+..|+.+||..| ..++||+..++..||..+||+++||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5778889999999999999 8999999999999999999999999999999999999866543
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.8e-17 Score=126.58 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCCCCcccChHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
..+++|++|+..|+.+||..|.. ++||+..+|..||..+||+++||++||||||+|+|+..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45677788999999999999987 999999999999999999999999999999999998654
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=2.2e-17 Score=121.45 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=53.4
Q ss_pred CCcccChHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 96 KKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
+|++|+..|+.+||..|.. ++||+..++..||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999973
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=3.2e-17 Score=129.11 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=57.2
Q ss_pred CCCCcccChHHHHHHHhhh---hccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHH
Q 019954 94 PEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 155 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~k 155 (333)
+|+|++|+..|+.+||..| ..++||+..+|..||..|||+++||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5778889999999999999 8999999999999999999999999999999999999876443
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.8e-17 Score=131.15 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=58.7
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhC---------------CCchhhhhhhhhhHHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------LQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg---------------Ls~rQVkvWFQNRRaK~Krkq~ 153 (333)
.+++|.|++|+..|+.+||..|..++||+..+|..||..|| |++.||++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35667788899999999999999999999999999999999 9999999999999999998764
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1.9e-17 Score=123.34 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=55.1
Q ss_pred CCCCCcccChHHHHHHHhhh---hccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.+++|++|+..|+.+||..| ..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45778889999999999999 89999999999999999999999999999999999986
No 55
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.68 E-value=2e-17 Score=129.80 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=56.6
Q ss_pred CCCCCcccChHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHH
Q 019954 93 QPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 156 (333)
Q Consensus 93 ~~rkR~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke 156 (333)
++++|++|+..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+.....+
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 3456777999999999999999 999999999999999999999999999999999998765433
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=129.13 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=54.0
Q ss_pred CCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 95 rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
+++++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999999854
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=127.04 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=57.4
Q ss_pred CCCCCCcccChHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
.++++|++|+..|+.+|+..|.. ++||+..+|..||..+||+++||++||||||+|+|+..++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 45677788999999999999987 5999999999999999999999999999999999986544
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=5.9e-17 Score=127.93 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=55.9
Q ss_pred cCCCCCCcccChHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
..++++|++|+..|+.+||..|.. ++||+..+|..||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345667888999999999999999 999999999999999999999999999999999983
No 59
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-17 Score=125.88 Aligned_cols=56 Identities=43% Similarity=0.605 Sum_probs=53.1
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
.+|..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 48999999999999999999999999999999999999999999999999987644
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=5.7e-17 Score=139.98 Aligned_cols=61 Identities=25% Similarity=0.468 Sum_probs=55.0
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
.+++|+|++||..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3556678889999999999999999999999999999999999999999999999999985
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.65 E-value=6.2e-17 Score=141.56 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=54.4
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
.+++|+|++|+..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3567778889999999999999999999999999999999999999999999999999974
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=120.53 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=50.7
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
-|.+|+.+||..|..++||+..+|.+||..|||+++||++||||||+|||+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 46899999999999999999999999999999999999999999999999854
No 63
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=6.6e-17 Score=121.78 Aligned_cols=50 Identities=28% Similarity=0.473 Sum_probs=46.8
Q ss_pred hHHHHHHHhhh-hccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 102 VDQVQFLEKSF-EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 102 ~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
..|+.+||+.| ..++||+..+|.+||++|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45899999999 679999999999999999999999999999999999863
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.64 E-value=8.8e-17 Score=141.41 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=52.4
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
.+++|+|++|+..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+||...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 456677888999999999999999999999999999999999999999999999999998653
No 65
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=127.38 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=58.2
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHh---------------------CCCchhhhhhhhhhHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDL---------------------GLQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~L---------------------gLs~rQVkvWFQNRRaK~K 149 (333)
.+++|+|++|+..|+.+||+.|..++||+..+|++||..| +|++.+|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3567778889999999999999999999999999999999 7999999999999999999
Q ss_pred HHHH
Q 019954 150 TKQL 153 (333)
Q Consensus 150 rkq~ 153 (333)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8653
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=136.59 Aligned_cols=59 Identities=24% Similarity=0.438 Sum_probs=56.1
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
+++|+|++|+..|+.+||..|..++||+..+|..||.+|||+++||+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 46677788999999999999999999999999999999999999999999999999997
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=118.30 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=50.3
Q ss_pred cccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 98 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 98 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
..++..|+..||..|..++||+..+|.+||.+|||+++||+|||||||+|.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 346689999999999999999999999999999999999999999999998763
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=4.9e-16 Score=118.11 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=54.0
Q ss_pred CCCCCCcccChHHHHHHHhhhhc-cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 149 (333)
.++|.|+.|+.+|+.+|+..|+. ++||+...|..||.+|||++++|+|||||||.-.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 46778888999999999999999 99999999999999999999999999999997544
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=4.6e-16 Score=135.46 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=56.3
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
+++|+|++|+..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 456778889999999999999999999999999999999999999999999999999974
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.61 E-value=2.1e-16 Score=128.45 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=53.8
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHH------------------hC---CCchhhhhhhhhhHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKD------------------LG---LQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~------------------Lg---Ls~rQVkvWFQNRRaK~K 149 (333)
.+++|.|+.|+..|+.+||..|..++||+..+|++||.. || |++.||+|||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 455667778999999999999999999999999999999 88 999999999999999998
Q ss_pred HHHH
Q 019954 150 TKQL 153 (333)
Q Consensus 150 rkq~ 153 (333)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 8663
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-15 Score=115.53 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=51.0
Q ss_pred ccChHHHHHHHhhhh---ccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHHH
Q 019954 99 RLTVDQVQFLEKSFE---VENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDY 157 (333)
Q Consensus 99 rft~~Ql~~LE~~F~---~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke~ 157 (333)
+|+.+|+.+|+..|. .++||+..+|..||..+||+++||++||||||+|+|+..+++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987666543
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=9.4e-16 Score=134.04 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=54.4
Q ss_pred ccCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954 90 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 152 (333)
Q Consensus 90 ~~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq 152 (333)
..+.+|+|++||..|+.+||..|..++||+..+|..||.+|||+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345667788899999999999999999999999999999999999999999999999999854
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=5.4e-14 Score=126.94 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=53.0
Q ss_pred cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhC---------------------CCchhhhhhhhhhHHHHH
Q 019954 91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------------LQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK~K 149 (333)
.+++|+|+.|+..|+.+||+.|..++||+..+|++||..|+ |++.||++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 34566777799999999999999999999999999999999 999999999999999987
Q ss_pred H
Q 019954 150 T 150 (333)
Q Consensus 150 r 150 (333)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 5
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=102.98 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=44.0
Q ss_pred hHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHH
Q 019954 102 VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRAR 147 (333)
Q Consensus 102 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK 147 (333)
.+|+.+||.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999984
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=106.63 Aligned_cols=57 Identities=28% Similarity=0.322 Sum_probs=52.7
Q ss_pred ccChHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 155 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~k 155 (333)
.|+.+++.+|+..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..+++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 4899999999999987 99999999999999999999999999999999999865543
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.28 E-value=1.1e-12 Score=126.43 Aligned_cols=55 Identities=33% Similarity=0.575 Sum_probs=51.5
Q ss_pred CCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHH
Q 019954 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 95 rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 149 (333)
+.++.|+..|+..||+.|+.++||+..+|.+||.+|||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3455699999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.24 E-value=4.1e-12 Score=116.51 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=51.4
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhC---------------------CCchhhhhhhhhhHHHH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------------LQPRQVAIWFQNRRARW 148 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK~ 148 (333)
+++|.|+.|+..|+.+||+.|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4555666799999999999999999999999999999988 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.89 E-value=8e-11 Score=79.32 Aligned_cols=28 Identities=46% Similarity=1.032 Sum_probs=23.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019954 135 RQVAIWFQNRRARWKTKQLEKDYDVLQN 162 (333)
Q Consensus 135 rQVkvWFQNRRaK~Krkq~~ke~~~l~~ 162 (333)
+||+|||||||||||+++.++.++.++.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~~ 28 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQR 28 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHHH
Confidence 6999999999999999988766554443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.17 E-value=0.034 Score=42.09 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=37.3
Q ss_pred HHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q 019954 104 QVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 143 (333)
Q Consensus 104 Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQN 143 (333)
-.+.|+++|...+.+.......|+.+.+|+..||+-||--
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3578999999999999999999999999999999999954
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.79 E-value=1 Score=35.33 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 144 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 144 RRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
||.|.|+++... .++.....|..+|..|..+.+.|+.|+..|+.-|.
T Consensus 28 rrSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443 34556677888888888888888888888877666
No 81
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.22 E-value=1.2 Score=33.59 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 154 EKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 154 ~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
+.....|......|...+..|..||+.|+.++..|..++.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777777888888888888888877665
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.21 E-value=0.92 Score=34.85 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 144 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 144 RRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
||.+.|+++... .++.....|..+|..|..+.+.|+.|+..|+.-|
T Consensus 28 krSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555443 3445566677777777777777777777776544
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.97 E-value=2.4 Score=30.55 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
....|......|...|..|..+...|+.|+..|+..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777788888888888888888888888887664
No 84
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=87.78 E-value=0.56 Score=35.96 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=30.0
Q ss_pred CcccChHHHHHHHhhhhcc-CCCCHHHHHHHHHHhCCCchhhhhhhhh
Q 019954 97 KRRLTVDQVQFLEKSFEVE-NKLEPERKIQLAKDLGLQPRQVAIWFQN 143 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~-~~p~~~~r~~LA~~LgLs~rQVkvWFQN 143 (333)
|++|+.++....-..+... .. ....+|+.+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888765554444322 22 3678999999999999999753
No 85
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=85.53 E-value=4.7 Score=31.76 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=42.2
Q ss_pred CCCchhhhhhhhhhHHHH-------HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 131 GLQPRQVAIWFQNRRARW-------KTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 131 gLs~rQVkvWFQNRRaK~-------Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
||+..+|..|=|-||.-. -+.+...+...|......|..+-+.|..|+.++..|...++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666421 122333445666677777777778888888888888877777664
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=81.77 E-value=9.5 Score=27.58 Aligned_cols=38 Identities=29% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
....|......|...|..|..+...|+.|+..|+..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888888888888888876654
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.90 E-value=2.8 Score=29.78 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=13.7
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 165 NSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 165 ~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
+.|+.++..|+++.+.|+.++..|+.+|.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444445555445544443
No 88
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.60 E-value=9.2 Score=27.78 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
....|......|...|..|..+...|+.|+..|+.-|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677778888888888888888888888876553
No 89
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.25 E-value=3.9 Score=29.93 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=17.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 166 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 166 ~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.|......|..+|..|+.|+..|+..+.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556667777777777777776553
No 90
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=77.12 E-value=2.6 Score=29.47 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
|++|+.+....+...+.. .........++|.++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888877666444443 222112256899999999999999964
No 91
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.29 E-value=2.8 Score=29.78 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHH
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEV 185 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~ 185 (333)
+++.|+..+..|+..+..|.++++.|++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555444443
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=76.21 E-value=4.1 Score=29.41 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=20.7
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 158 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 158 ~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
..|......|..++..|..+...|+.|+..|+..|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666665544
No 93
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.63 E-value=4.7 Score=32.02 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=38.2
Q ss_pred CCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHH
Q 019954 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 148 (333)
Q Consensus 95 rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~ 148 (333)
++|++||.++...+-..+..+.... ..+||+.+|++...|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 3567899999877766665454443 33689999999999999998766543
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.92 E-value=5.8 Score=29.74 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=36.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 019954 138 AIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 189 (333)
Q Consensus 138 kvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~ 189 (333)
+-=|.-|+.+. .+.++.....|...+..|..++..|..++..|..|+..|+
T Consensus 20 QRafReRK~~~-i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 20 QRAFRKRKEDH-LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455444333 3456777777888888889999999999999999987764
No 95
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=74.86 E-value=4.1 Score=26.44 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|+.||.+|++-|.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 445567799999999999999987664
No 96
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=72.04 E-value=7.1 Score=29.35 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 95 rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
+++++|+.++....-..+. ... ...++|+++|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 4456799888655444554 222 256889999999999999974
No 97
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.95 E-value=7 Score=25.17 Aligned_cols=27 Identities=4% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|+.||.+|++-|.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 334556789999999999999997664
No 98
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.78 E-value=7.6 Score=25.13 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|+.||.+|+.-|.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 444566789999999999999997664
No 99
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=68.59 E-value=9.7 Score=24.98 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=23.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019954 166 SLKADYDNLFKEKEKLKAEVLKLTDKLQV 194 (333)
Q Consensus 166 ~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~ 194 (333)
.|....+.|..+|..|+.||.+|++.+..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 35556677899999999999999987753
No 100
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.78 E-value=6.8 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|+.||.+|++-|.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 344567789999999999999987553
No 101
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.68 E-value=20 Score=27.95 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=29.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 135 RQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 135 rQVkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
.+++.|-+....+.+. .-+.+...|+...+.+..++..|..|.+.|.+++.+++.+|
T Consensus 37 ~~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 37 AELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455554433333322 12344455555555666666666666666666666666553
No 102
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=65.33 E-value=14 Score=24.20 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=23.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQVK 195 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~ 195 (333)
|-...+.|..+|..|..||.+|+.-+...
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 44556778999999999999999877643
No 103
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.14 E-value=26 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 153 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 153 ~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
++.+.+.|+..+..|..++..+....+.|..|+.+|+....
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444455555544444444433333335556666555444
No 104
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.12 E-value=13 Score=27.86 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=34.4
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
++..|..+|.-.|-... .-.++|..||++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 78888888877553332 35789999999999999988766665554
No 105
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=61.73 E-value=44 Score=25.54 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019954 143 NRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 194 (333)
Q Consensus 143 NRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~ 194 (333)
+||.|.+-.+...+.+.|+.-.+.|+.-...|..-..+|+.|...+...+..
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788778888888888777777777666666666666666665555443
No 106
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=61.25 E-value=68 Score=26.38 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=43.4
Q ss_pred CCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 019954 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLF 175 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~ 175 (333)
..|.|+..++..|.. ....+.+|++-..|+..+...+.... ....-...|......+...-..|.
T Consensus 37 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~L~~~~~~l~~~i~~L~ 101 (142)
T 3gp4_A 37 GVRKFGAEDLRWILF-------------TRQMRRAGLSIEALIDYLALFREGEH--TLEARAELLKKQRIELKNRIDVMQ 101 (142)
T ss_dssp SCBCBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355699999998843 33357889999999888765432211 111222334444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 019954 176 KEKEKLKAEVLKLTD 190 (333)
Q Consensus 176 ~Ene~L~~E~~~l~~ 190 (333)
...+.|...+.....
T Consensus 102 ~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 102 EALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 107
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.13 E-value=32 Score=24.40 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=16.9
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 163 SYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 163 ~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
....|......|..+|..|+.++..|+..+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 108
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.77 E-value=40 Score=25.57 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=27.0
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019954 160 LQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVK 195 (333)
Q Consensus 160 l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~ 195 (333)
-+.....+......|..||..|+.++..|+..+...
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777888899999999998888777643
No 109
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=60.42 E-value=13 Score=24.09 Aligned_cols=27 Identities=7% Similarity=0.306 Sum_probs=20.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|..||.+|++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 334556789999999999999987654
No 110
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=59.37 E-value=16 Score=23.63 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|..||.+|++-|.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 344556788999999999999998765
No 111
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=58.90 E-value=10 Score=23.88 Aligned_cols=40 Identities=5% Similarity=0.132 Sum_probs=27.9
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 143 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQN 143 (333)
.++..+...+...+... + ...++|+.||++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777665544445332 2 2568899999999999999853
No 112
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.39 E-value=16 Score=33.85 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 019954 152 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 189 (333)
Q Consensus 152 q~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~ 189 (333)
.++++...|.+++.+|+.....+..|..+|+.|+.+|+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666777777777777777777777777777665
No 113
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=57.26 E-value=4.7 Score=26.11 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=28.8
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
.++.++...+...+... . ...+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 36666655555555432 2 356899999999999999986533
No 114
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.75 E-value=11 Score=26.74 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=18.2
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 164 YNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 164 ~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
.+.+...++.|.+||..|+.++.+|+++|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566677778888888888888877654
No 115
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=56.22 E-value=43 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=35.6
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.+++.|..++.-.|.... .-.++|..+|++...|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888877654332 34789999999999999999876666654
No 116
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=54.14 E-value=41 Score=26.49 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=34.8
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.+++.+..+|.-.|.... .-.++|..+|++...|+.+...-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 367777777776654332 34689999999999999998876666654
No 117
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.11 E-value=19 Score=23.32 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 167 LKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 167 Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
|-...+.|..+|..|..||.+|++-|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 334556789999999999999987654
No 118
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.28 E-value=36 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=19.0
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 165 NSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 165 ~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
+.|-.....|..||..|+.++..|+..+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556677778888888877776543
No 119
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.84 E-value=9.9 Score=26.42 Aligned_cols=47 Identities=17% Similarity=0.010 Sum_probs=34.5
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.+++.+..+|...|... ..-.++|..+|+++..|+.+...-|.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 37788888888765433 234689999999999999988765555554
No 120
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=52.30 E-value=62 Score=26.74 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=44.3
Q ss_pred CCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 019954 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLF 175 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~ 175 (333)
..|.|+..++..|. .....+.+|++-.+|+..+...+..... ...-.. -|......|.
T Consensus 51 g~R~Y~~~dl~~l~-------------~I~~lr~~G~sL~eIk~~l~~~~~~~~~--~~~~~~-------~l~~~~~~l~ 108 (148)
T 3gpv_A 51 GDRIFNEEALKYLE-------------MILCLKNTGMPIQKIKQFIDWSMEGDST--ILHRLK-------LMKQQEANVL 108 (148)
T ss_dssp CCEEBCHHHHHHHH-------------HHHHHHTTTCCHHHHHHHHHHHHHCGGG--HHHHHH-------HHHHHHHHHH
T ss_pred CCeecCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHHhhhcCCCC--HHHHHH-------HHHHHHHHHH
Confidence 34569999988884 3333578899999999888754432111 111112 2333344455
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 019954 176 KEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 176 ~Ene~L~~E~~~l~~~l~~~~ 196 (333)
++.+.|+.....|..++...+
T Consensus 109 ~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 109 QLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 121
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=52.08 E-value=32 Score=30.30 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 158 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 158 ~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
..+-..+..|++.+..|.++|++|+.|.++..+++
T Consensus 148 d~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 148 CYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455666666667777777776666655444
No 122
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.95 E-value=67 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 019954 154 EKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 189 (333)
Q Consensus 154 ~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~ 189 (333)
..+...|.+....++...+.|..+|++|+.|...-.
T Consensus 33 KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 33 KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555555544433
No 123
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=51.80 E-value=46 Score=29.53 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=27.2
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhh
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 144 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNR 144 (333)
.|.|+..|+..|. .....+.+|++-.+|+..+.++
T Consensus 42 ~R~y~~~~~~~l~-------------~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 42 YRYYTDSQLIHLD-------------LIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp CEEEETGGGGHHH-------------HHHHHHHTTCCHHHHHHHTTSC
T ss_pred ccccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhC
Confidence 4559999988883 3344588999999999998765
No 124
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.58 E-value=75 Score=26.43 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019954 152 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 152 q~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~ 196 (333)
...++...|+.....++...+.+.+++++|+.++..|..++...+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666666666677777777666666655443
No 125
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.51 E-value=48 Score=23.24 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=20.4
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 160 LQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 160 l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
++.....|.+.|..|......-+.|+..|++.|.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666665553
No 126
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.91 E-value=68 Score=22.93 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=19.1
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 162 NSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 162 ~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.....|......|..+|..|+.++..|+..+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666655443
No 127
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=48.54 E-value=19 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=36.0
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 151 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krk 151 (333)
.++..+..+|.-.++-- ...++|..||++...|+.+..+-|.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 48999999988864322 247899999999999999887766666543
No 128
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.50 E-value=59 Score=23.34 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=13.7
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 164 YNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 164 ~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
...|......|..+|..|+.++..|+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554444433
No 129
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=47.47 E-value=37 Score=26.27 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=35.8
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
...++..+..+|.-.++-- .-.++|..||+++..|+.+.++-+.|..-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4459999999997765322 23789999999999999988765555443
No 130
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=46.90 E-value=29 Score=27.40 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=32.4
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.++..+..+|. .|- ....-.++|..||++...|+.+...-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36777777776 332 22246789999999999999988765555554
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.70 E-value=32 Score=27.43 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=20.4
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019954 163 SYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 194 (333)
Q Consensus 163 ~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~ 194 (333)
.+..|+...+.|..|+++|+.++..|..+|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667777666666666643
No 132
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.63 E-value=40 Score=26.15 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=25.8
Q ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019954 161 QNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 161 ~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~ 196 (333)
+.....+......|..||..|+.++..|+..+....
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666677788888888888888887776443
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=46.26 E-value=31 Score=23.99 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=34.8
Q ss_pred cccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 98 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 98 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
..++..|..+|...+. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3488999999887432 22 34689999999999999888765555543
No 134
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.18 E-value=30 Score=27.65 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLK 187 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~ 187 (333)
++..|+...+.|..+++.|.++++.|..++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666655
No 135
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.91 E-value=36 Score=27.20 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 019954 169 ADYDNLFKEKEKLKAEVLKLTDK 191 (333)
Q Consensus 169 ~~~~~L~~Ene~L~~E~~~l~~~ 191 (333)
+....|..|.++|++|+.+|+..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666665543
No 136
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.78 E-value=36 Score=24.99 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=35.7
Q ss_pred cccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 98 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 98 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
..++..+..+|.-.+. . ..-.++|..||++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3589999999888532 2 245689999999999999988766665554
No 137
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.59 E-value=23 Score=25.23 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=33.7
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
+++.+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 78888888877432 22 24589999999999999988766666554
No 138
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.04 E-value=53 Score=27.00 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 019954 132 LQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 189 (333)
Q Consensus 132 Ls~rQVkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~ 189 (333)
|.....+.|-+|+-...-+..+.++...-+.....|..+...|.++.....+|+.+|+
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788887654444444433333233333344444444444444444444443
No 139
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.60 E-value=32 Score=24.54 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=22.8
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 162 NSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 162 ~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.....|......|..+|..|+.++..|+..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777788777777776654
No 140
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.40 E-value=36 Score=21.02 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=16.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 169 ADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 169 ~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
+-..+|.+||..|++.+++|-.++
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567778888888887776554
No 141
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.91 E-value=67 Score=22.49 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 019954 152 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 188 (333)
Q Consensus 152 q~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l 188 (333)
.+......|...+..|-........+..+|++|+.+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666666666666666666666655
No 142
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=43.88 E-value=1.7 Score=35.38 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCchhhhhhhhhhHHHH-------HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 019954 131 GLQPRQVAIWFQNRRARW-------KTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTD 190 (333)
Q Consensus 131 gLs~rQVkvWFQNRRaK~-------Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~ 190 (333)
||++.+|.-.=|-||.-. -+++...+...|......|..+.+.|..|+..|+.|+..++.
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544443211 112223344445555555555555566666666655555443
No 143
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.09 E-value=40 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=20.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 168 KADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 168 k~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
-...+.|..+|..|..||.+|++-|.
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34456788899999999999987654
No 144
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=41.45 E-value=41 Score=21.80 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=22.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 166 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 166 ~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.+.++-..|..|++.|+.....|+.+|.
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788899999999888888775
No 145
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.04 E-value=27 Score=24.48 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=34.9
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.+++.+..+|...|....+ ....-.++|..+|++...|+.+...-+.|.|.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3778888888888732111 01224679999999999999987655555543
No 146
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.88 E-value=1.3e+02 Score=24.26 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhh----HHHHHHHHHHHHHHHHHHHHHh
Q 019954 148 WKTKQLEKDYDVLQNSYNSLKADY----DNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 148 ~Krkq~~ke~~~l~~~~~~Lk~~~----~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.+..++..+++.|+..|...+.+. ..|..|...|+.+...|+..+.
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555444443332 2244444455544444444443
No 147
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.81 E-value=98 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=19.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 166 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 166 ~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.|......|..+++.|+.++..|+.+|.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777776664
No 148
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.55 E-value=1.2e+02 Score=24.64 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019954 145 RARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 145 RaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~ 196 (333)
|...++..++.....+..........+..|..++.+|..++..|+..+...+
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666777777777788888889999999999999999998877543
No 149
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=40.55 E-value=32 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=30.5
Q ss_pred CcccChHHHHHHHhhh-hcc-CCCC-HHHHHHHHHHhCCCchhhhhhhh
Q 019954 97 KRRLTVDQVQFLEKSF-EVE-NKLE-PERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F-~~~-~~p~-~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
+++|+.++....-..+ ... .+.+ ......+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888765443333 321 1222 24567899999999999999964
No 150
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.82 E-value=91 Score=25.58 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 155 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 155 ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
+....|+..+..|+..-....+|.++|+.+...|...+.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 334455555556666666666666666666655554443
No 151
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=37.88 E-value=1.3e+02 Score=22.69 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCcccChHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCC--Cchhhhhhhh
Q 019954 96 KKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGL--QPRQVAIWFQ 142 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgL--s~rQVkvWFQ 142 (333)
+...++.+|+..|...|.. +.+.+..+...+.+.+|+ +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445899999999999874 568999999999899885 5667777764
No 152
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=37.33 E-value=46 Score=26.87 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCCcccChHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCCch
Q 019954 95 EKKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPR 135 (333)
Q Consensus 95 rkR~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgLs~r 135 (333)
.+|..+|.+|+..|...|.. +.+.+..+...+.+.||+.+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 44567999999999999974 558999999998899997654
No 153
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.72 E-value=47 Score=23.47 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=34.8
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 149 (333)
.+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3788888999888752100 0112458999999999999998765555554
No 154
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=36.72 E-value=2.1 Score=36.30 Aligned_cols=29 Identities=0% Similarity=-0.104 Sum_probs=21.1
Q ss_pred CCCCCCcccChHHHHHHHhhhhccCCCCH
Q 019954 92 HQPEKKRRLTVDQVQFLEKSFEVENKLEP 120 (333)
Q Consensus 92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~ 120 (333)
..+|.|+.|+..|++.|+..|+.+++|..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 44566677999999999999999999864
No 155
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.71 E-value=64 Score=22.72 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=12.0
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Q 019954 164 YNSLKADYDNLFKEKEKLKAEVLK 187 (333)
Q Consensus 164 ~~~Lk~~~~~L~~Ene~L~~E~~~ 187 (333)
|+.|-...+.|..||-.|+.|+..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 444444445555555555555443
No 156
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.61 E-value=44 Score=24.77 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=34.7
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.++..+..+|.-.+.- + .-.++|..||++...|+.+..+-|.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4899999998875432 2 23578999999999999998766666554
No 157
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.47 E-value=52 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=22.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 165 NSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 165 ~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
..|......+..|++.|+.|+..|+.+|.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888888877664
No 158
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.42 E-value=1.4e+02 Score=23.66 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019954 174 LFKEKEKLKAEVLKLTDK 191 (333)
Q Consensus 174 L~~Ene~L~~E~~~l~~~ 191 (333)
...++.++..|+..|+..
T Consensus 45 aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 159
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=35.89 E-value=1.4e+02 Score=22.99 Aligned_cols=47 Identities=30% Similarity=0.436 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 019954 152 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEKE 198 (333)
Q Consensus 152 q~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~~~ 198 (333)
|++..|-..-..|++|....+.|.+||..|---+.+|-.++...+++
T Consensus 30 qlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~~~ 76 (97)
T 1no4_A 30 QLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQ 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccchhh
Confidence 44566666777777777777888888877777777776666655543
No 160
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.86 E-value=1e+02 Score=30.40 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=6.3
Q ss_pred HHhhHHHHHHHHHHHH
Q 019954 168 KADYDNLFKEKEKLKA 183 (333)
Q Consensus 168 k~~~~~L~~Ene~L~~ 183 (333)
+..++.+.+|+++|+.
T Consensus 536 ~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 536 QKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHH
Confidence 3333333344443333
No 161
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.19 E-value=28 Score=29.50 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=34.4
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
+++.+..+|.-.|-.. ....++|..||++...|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 7778888887776432 235689999999999999988766665554
No 162
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=35.14 E-value=60 Score=26.47 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=36.7
Q ss_pred CCCCcccChHHHHHHHhhh-hccCCCCHHHHHHHHH----Hh--CCCchhhhhhhhhh
Q 019954 94 PEKKRRLTVDQVQFLEKSF-EVENKLEPERKIQLAK----DL--GLQPRQVAIWFQNR 144 (333)
Q Consensus 94 ~rkR~rft~~Ql~~LE~~F-~~~~~p~~~~r~~LA~----~L--gLs~rQVkvWFQNR 144 (333)
+++|+++|.+|...|-..+ +.++..... .||. ++ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678889999999999888 667766544 4455 77 77888899898664
No 163
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.07 E-value=47 Score=24.49 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=35.0
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.|.|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788888888887752100 01235678999999999999988765555554
No 164
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.66 E-value=1.5e+02 Score=24.51 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019954 152 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 152 q~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~ 196 (333)
.++.+.+.+....-.||.+...+..+.+.++.++.+|+.++..-.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666666555433
No 165
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.31 E-value=69 Score=20.70 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=20.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 168 KADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 168 k~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
-...+.|..+|..|..||.+|++-|.
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 33456788899999999999987665
No 166
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.75 E-value=56 Score=19.59 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019954 172 DNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 172 ~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
+.|.+|.+.|+..+.+|+.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888888887764
No 167
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=33.70 E-value=26 Score=28.60 Aligned_cols=35 Identities=31% Similarity=0.598 Sum_probs=22.6
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHH
Q 019954 105 VQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153 (333)
Q Consensus 105 l~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~ 153 (333)
+.+++-.|+.|+||.+.=- +|- =.|||.|||..+.
T Consensus 15 vRiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQr 49 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHH
Confidence 4455666889999975411 111 1699999997653
No 168
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=33.51 E-value=19 Score=27.10 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=23.4
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHH
Q 019954 105 VQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 154 (333)
Q Consensus 105 l~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ 154 (333)
+.+++-.|+.++||.++--.+ | =.|||.+|+..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 455666788999987542111 1 15899999876643
No 169
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.41 E-value=50 Score=27.07 Aligned_cols=46 Identities=11% Similarity=-0.114 Sum_probs=33.6
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
++..+..+|.-.|-... .-.++|..||+++..|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 67777777766554321 24689999999999999998766665554
No 170
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=33.13 E-value=22 Score=23.89 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 171
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=33.08 E-value=1.8e+02 Score=24.04 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 019954 142 QNRRARWKTKQLEKDYDVL 160 (333)
Q Consensus 142 QNRRaK~Krkq~~ke~~~l 160 (333)
+|.+.+.+...+..+...+
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l 41 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5555555554555444444
No 172
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.91 E-value=1e+02 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=19.3
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019954 163 SYNSLKADYDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 163 ~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l 192 (333)
.+..|+.....|..|+..|+.++.+|++-.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777776666533
No 173
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.39 E-value=45 Score=20.01 Aligned_cols=14 Identities=50% Similarity=0.553 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 019954 177 EKEKLKAEVLKLTD 190 (333)
Q Consensus 177 Ene~L~~E~~~l~~ 190 (333)
|...|+.|++.|+.
T Consensus 8 evgelkgevralkd 21 (27)
T 3v86_A 8 EVGELKGEVRALKD 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 34444444444443
No 174
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.85 E-value=1.8e+02 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHh----hHHHHHHHHHHHHHHHHHHHHH
Q 019954 144 RRARWKTKQLEKDYDVLQNSYNSLKAD----YDNLFKEKEKLKAEVLKLTDKL 192 (333)
Q Consensus 144 RRaK~Krkq~~ke~~~l~~~~~~Lk~~----~~~L~~Ene~L~~E~~~l~~~l 192 (333)
|-.+.+..++..+.+.++..+...+.+ ...|..+...|+.....|+.++
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555544444443 3334444444444444444444
No 175
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.61 E-value=1.4e+02 Score=23.75 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=9.7
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHH
Q 019954 158 DVLQNSYNSLKADYDNLFKEKEK 180 (333)
Q Consensus 158 ~~l~~~~~~Lk~~~~~L~~Ene~ 180 (333)
..|......|+++|..|..||+.
T Consensus 68 ~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 176
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.56 E-value=1.3e+02 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=15.8
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019954 165 NSLKADYDNLFKEKEKLKAEVLKLTDKLQVK 195 (333)
Q Consensus 165 ~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~ 195 (333)
+....+...+.+|+++++.++.++..++..+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3344444455555555555555555544433
No 177
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.44 E-value=30 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998876
No 178
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.37 E-value=24 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998776
No 179
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=31.23 E-value=21 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 180
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.16 E-value=34 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 181
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.04 E-value=72 Score=24.00 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=33.5
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHH
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 148 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~ 148 (333)
...||..+..+|.-.++ .+ ...++|..||++++.|+...++=+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34599999999987762 22 367899999999999988776544443
No 182
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.68 E-value=57 Score=30.09 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019954 154 EKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVK 195 (333)
Q Consensus 154 ~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~ 195 (333)
+..+..++.+...|...|..|..+...++.|+.+|++++..-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667888888888999999999999999999998888643
No 183
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=29.76 E-value=24 Score=25.24 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998766
No 184
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.65 E-value=1.9e+02 Score=23.37 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=21.8
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
...+|+++.+-.+.+|.+-...-+++..|..+|...|.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 45677777776666665555555555555444444443
No 185
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.43 E-value=36 Score=22.90 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.2
Q ss_pred HHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 124 IQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 124 ~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
.++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 589999999999999988766665554
No 186
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.40 E-value=1.4e+02 Score=29.93 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=41.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHh-----------hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019954 135 RQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKAD-----------YDNLFKEKEKLKAEVLKLTDKLQVKEKESKN 201 (333)
Q Consensus 135 rQVkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~-----------~~~L~~Ene~L~~E~~~l~~~l~~~~~~~~~ 201 (333)
.-+..|=+.|..+.+...++.+.+.+......++.. ...|.++...|+.++..|..++...+++...
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666555432 2356777777777777777666655554443
No 187
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.15 E-value=28 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCchhhhhhhhh
Q 019954 123 KIQLAKDLGLQPRQVAIWFQN 143 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQN 143 (333)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 356788888888888888877
No 188
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=28.94 E-value=23 Score=24.21 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 189
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.51 E-value=1.4e+02 Score=20.31 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=16.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 168 KADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 168 k~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
..+-..|.+-...|+.|+.+|.+.+.
T Consensus 23 erdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 23 ERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666777778777776654
No 190
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.71 E-value=37 Score=23.51 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 191
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.69 E-value=78 Score=22.16 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHHHH
Q 019954 157 YDVLQNSYNSLKADYDNLFKEKEKLKAEV 185 (333)
Q Consensus 157 ~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~ 185 (333)
.+.|......|..+|..|..+...|+.++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666666543
No 192
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.53 E-value=73 Score=31.20 Aligned_cols=43 Identities=30% Similarity=0.460 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHH
Q 019954 143 NRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEV 185 (333)
Q Consensus 143 NRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~ 185 (333)
|.....|-++++++.+.|+.+.+.++.+...+.+|..+++.|+
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~ 86 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEV 86 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555554444444444444444444443
No 193
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.45 E-value=39 Score=24.56 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=36.7
Q ss_pred cccChHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 98 RRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 98 ~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
..++..++..|...|.. +.+++..+...+...+|++..+|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34888999999999864 4578888888888899988888887774
No 194
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=27.40 E-value=2.3e+02 Score=23.20 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhh
Q 019954 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 144 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNR 144 (333)
.+|+|+..++..|.. ....+.+|++-.+|+..+...
T Consensus 39 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~~I~~~l~~~ 74 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQ-------------IQSFKHLGFSLGEIQNIILQR 74 (146)
T ss_dssp SCEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHTSS
T ss_pred CCEeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHcc
Confidence 356699999998842 233577899999998888654
No 195
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.39 E-value=55 Score=24.05 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=33.3
Q ss_pred cChHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 100 LTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
++.++...+...|.. +.+.+..+-..+...+|++..+|+.+|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678888999998874 4467888888888888988877766553
No 196
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=27.03 E-value=27 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 197
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.88 E-value=37 Score=25.68 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQ 161 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke~~~l~ 161 (333)
..+||+.+|++...|..|..+++. ....+.+-...|.
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~~--s~~~l~kIa~~L~ 76 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNENV--SLTVLLAICEYLN 76 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCCC--CHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCc--CHHHHHHHHHHHC
Confidence 567899999999999999988652 3334444444433
No 198
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.40 E-value=2.4e+02 Score=22.81 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 149 KTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 149 Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
+..-++...+..+..+..=++..+.+..|++.|..++..|...+.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455566666666667777888899999999999999887653
No 199
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.35 E-value=2.1e+02 Score=22.89 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019954 146 ARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 146 aK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~ 196 (333)
-|.+-...+.....++..+.....+.+.+......|+.++..|+..|..+.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555666666666677777777776666543
No 200
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.93 E-value=1.3e+02 Score=26.43 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019954 154 EKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 194 (333)
Q Consensus 154 ~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~ 194 (333)
....+.++.-++.+...+..|..+|.+|+.|+.+|+.....
T Consensus 137 ~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 137 ENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788899999999999999999999999876653
No 201
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.70 E-value=1.7e+02 Score=28.88 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=38.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHh---hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019954 137 VAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKAD---YDNLFKEKEKLKAEVLKLTDKLQVKEKESKN 201 (333)
Q Consensus 137 VkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~---~~~L~~Ene~L~~E~~~l~~~l~~~~~~~~~ 201 (333)
+..|=+.|..+.+...++.+.+.+......++.. ...|.++...|+.++..|..++...+++...
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666665555544432 3456777777777777777776666555444
No 202
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=25.37 E-value=43 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||..+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45788899999988988887764
No 203
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.27 E-value=39 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||+.+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999987543
No 204
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.07 E-value=5.1e+02 Score=25.77 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=39.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHh---hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019954 137 VAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKAD---YDNLFKEKEKLKAEVLKLTDKLQVKEKESKN 201 (333)
Q Consensus 137 VkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~---~~~L~~Ene~L~~E~~~l~~~l~~~~~~~~~ 201 (333)
+..|=+.|..+.+...++.+.+.+......++.. -..|.++...|+.++..|..++...+.+...
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666655555443 3457777777777777777777655554443
No 205
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=24.89 E-value=31 Score=23.37 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988665
No 206
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.89 E-value=55 Score=29.73 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHhhhhhHHHhhHHHH---HHHHHHHHHHHHHHHHHhhh
Q 019954 160 LQNSYNSLKADYDNLF---KEKEKLKAEVLKLTDKLQVK 195 (333)
Q Consensus 160 l~~~~~~Lk~~~~~L~---~Ene~L~~E~~~l~~~l~~~ 195 (333)
++.++..|+.++..|. .+.+.|+.|+.+|+.-|...
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344444554444333 34445566666776655544
No 207
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.71 E-value=2.7e+02 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=27.0
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhH
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
.|.|+..++..|. .....+.+|++..+|+.++....
T Consensus 36 ~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~eI~~~l~~~~ 71 (135)
T 1q06_A 36 YRTYTQQHLNELT-------------LLRQARQVGFNLEESGELVNLFN 71 (135)
T ss_dssp CEECCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhhh
Confidence 4569999998884 33335889999999999886543
No 208
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.17 E-value=79 Score=24.49 Aligned_cols=42 Identities=5% Similarity=0.117 Sum_probs=30.8
Q ss_pred cccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhh
Q 019954 98 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 144 (333)
Q Consensus 98 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNR 144 (333)
+.++.++...+...+... . ...++|+.||++...|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 457787776666666433 2 25678999999999999999653
No 209
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.07 E-value=34 Score=24.23 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019954 150 TKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAE 184 (333)
Q Consensus 150 rkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E 184 (333)
......+.+.+...+..|..++..|..++++|+.+
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555666666666666665544
No 210
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.99 E-value=1.2e+02 Score=24.41 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCCCCCccccCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 82 NGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 82 ~~~~~~~~~~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
.+..............+.++.++...+-..+.... ...++|+.+|++...|..|++
T Consensus 8 ~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 8 SGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred hcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 211
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.93 E-value=2.4e+02 Score=21.51 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhh
Q 019954 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 143 (333)
Q Consensus 96 kR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQN 143 (333)
..+.|+..++..|. .....+.+|++...|+.++..
T Consensus 36 g~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 36 GHRRYSDADLDRLQ-------------QILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCEEBCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHTC
T ss_pred CCeecCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHhC
Confidence 34569999998884 223347889999999998865
No 212
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.84 E-value=1.1e+02 Score=20.01 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 019954 177 EKEKLKAEVLKL 188 (333)
Q Consensus 177 Ene~L~~E~~~l 188 (333)
|..+|+.|+.+|
T Consensus 22 eIa~Lk~eN~eL 33 (37)
T 1t6f_A 22 EIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH
Confidence 333444443333
No 213
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=23.72 E-value=34 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.082 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 214
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.01 E-value=1.5e+02 Score=26.51 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 019954 152 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTD 190 (333)
Q Consensus 152 q~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~ 190 (333)
|++.++...-..|+.|....+.+.+|+..|+.-+.+|++
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 445566666666666666666666666666666655543
No 215
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.94 E-value=1.4e+02 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=16.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 166 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 166 ~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.|......+..+++.|+.+...|+.+|.
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666665554
No 216
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.51 E-value=3.6e+02 Score=26.90 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCchhhhhhhh---hhHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 120 PERKIQLAKDLGLQPRQVAIWFQ---NRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 120 ~~~r~~LA~~LgLs~rQVkvWFQ---NRRaK~Krkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
...+..|...++|++.|.+.=.. .|-++..+.+++++++.|+.....|+.--.....-.+-++.|+..++.+..
T Consensus 385 ~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 385 DIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHG 461 (470)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 45667778888888888665442 222445555666666666666666555555555556677777777776654
No 217
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.33 E-value=2e+02 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=30.7
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHh-CCCchhhhh
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDL-GLQPRQVAI 139 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~L-gLs~rQVkv 139 (333)
+..+|.++-..|+.....-..-....=..||..+ |=+..||+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~ 61 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIA 61 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHH
Confidence 3459999999999888765544556667788888 456666654
No 218
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=22.21 E-value=46 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 219
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.05 E-value=2.7e+02 Score=21.30 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019954 174 LFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 174 L~~Ene~L~~E~~~l~~~l~ 193 (333)
..+.|+.|..|+.+|+.++.
T Consensus 50 ae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544
No 220
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.01 E-value=68 Score=23.73 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=33.3
Q ss_pred cChHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 100 LTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
++.++...|...|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567888889998864 4568888888888888988877776664
No 221
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.85 E-value=1.7e+02 Score=22.46 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=14.2
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 019954 164 YNSLKADYDNLFKEKEKLKAEVLKLTD 190 (333)
Q Consensus 164 ~~~Lk~~~~~L~~Ene~L~~E~~~l~~ 190 (333)
+..|+.....+..|...|+.++.+|+.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 222
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.77 E-value=35 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=30.6
Q ss_pred cChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 100 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 100 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
++..+..+|.-.|-.... -.++|..||+++..|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~s-----~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLT-----HRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCCS-----SCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC-----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 566666666654432221 1357889999999999998766666554
No 223
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=21.71 E-value=2.1e+02 Score=22.89 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHH
Q 019954 106 QFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 148 (333)
Q Consensus 106 ~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~ 148 (333)
...+..|.....++......+|.++||...++.-++.....+.
T Consensus 86 ~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~ 128 (175)
T 3gyk_A 86 AFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTA 128 (175)
T ss_dssp HHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHH
Confidence 3455667777778889999999999999988888876654443
No 224
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.67 E-value=39 Score=24.13 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCchhhhhhhhhhHH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRRA 146 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRRa 146 (333)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999987764
No 225
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=21.64 E-value=2.1e+02 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 46788999999999988887764
No 226
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.29 E-value=90 Score=27.05 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=35.3
Q ss_pred CcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954 97 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 150 (333)
Q Consensus 97 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 150 (333)
...+|..+.++|.-.++ .+ .-.++|..||++++.|+...+|-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 34589999888876542 21 24688999999999999988776665544
No 227
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.27 E-value=1.1e+02 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=10.7
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHHHHHH
Q 019954 157 YDVLQNSYNSLKADYDNLFKEKEKLKA 183 (333)
Q Consensus 157 ~~~l~~~~~~Lk~~~~~L~~Ene~L~~ 183 (333)
++.++..+..|.........+..+|..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~ 33 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLRE 33 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333344444444333333334444433
No 228
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.26 E-value=1.6e+02 Score=19.06 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019954 173 NLFKEKEKLKAEVLKLTD 190 (333)
Q Consensus 173 ~L~~Ene~L~~E~~~l~~ 190 (333)
+..++.+.|+.++..|..
T Consensus 11 a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHH
Confidence 333344444444444433
No 229
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.19 E-value=1.1e+02 Score=23.57 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=30.5
Q ss_pred ccChHHHHHHHhhhhccCCCCHHHHHHHHHHhC--CCchhhhhhhhhhHH
Q 019954 99 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG--LQPRQVAIWFQNRRA 146 (333)
Q Consensus 99 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg--Ls~rQVkvWFQNRRa 146 (333)
.++.++...+... ..++..+. .+|+..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4788887777666 44554554 46788888 788899999865443
No 230
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=21.05 E-value=45 Score=22.04 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=24.9
Q ss_pred hHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 019954 102 VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 142 (333)
Q Consensus 102 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQ 142 (333)
..+...+...+... + ...++|+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555554444322 2 356899999999999999974
No 231
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.05 E-value=1.4e+02 Score=22.72 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 019954 158 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 189 (333)
Q Consensus 158 ~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~ 189 (333)
..|+.....+..+.+.|..+++.|+.++..|+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555666677778888888888887775
No 232
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.04 E-value=1.6e+02 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019954 158 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 196 (333)
Q Consensus 158 ~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~ 196 (333)
..|+.....+......|..|+..|+.|+.+|+.++....
T Consensus 21 ~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 21 SILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433345566667777777888888888777766543
No 233
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.95 E-value=2.1e+02 Score=22.22 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=36.8
Q ss_pred hhhhhhHHHHH--HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 019954 139 IWFQNRRARWK--TKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 188 (333)
Q Consensus 139 vWFQNRRaK~K--rkq~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l 188 (333)
..-||.|.|.- +..++.+...|+.....|+.++..+..|.+.++..+..|
T Consensus 37 gyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 37 GYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666543 345667777788888889999988888888888877655
No 234
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.83 E-value=1.4e+02 Score=22.30 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=17.2
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 019954 159 VLQNSYNSLKADYDNLFKEKEKLKAEVLK 187 (333)
Q Consensus 159 ~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~ 187 (333)
.|+.....+..+.+.|..+++.|+.++.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455566666666666666666554
No 235
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=20.78 E-value=36 Score=29.40 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCchhhhhhhhhhH
Q 019954 122 RKIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 122 ~r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
...+||+.+|++...|..|..++|
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356899999999999999998754
No 236
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.63 E-value=2.1e+02 Score=27.72 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=34.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhh-HHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019954 137 VAIWFQNRRARWKTKQLEKDYDVLQNSYNS-LKADYDNLFKEKEKLKAEVLKLTDKLQVKEKESKN 201 (333)
Q Consensus 137 VkvWFQNRRaK~Krkq~~ke~~~l~~~~~~-Lk~~~~~L~~Ene~L~~E~~~l~~~l~~~~~~~~~ 201 (333)
+..|=+.|..+.+...++.+.+.+...... -+.+...|.++...|+.++..|..++...+++...
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444332 11233456666666666666666666655554443
No 237
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.54 E-value=1.2e+02 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHH
Q 019954 153 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAE 184 (333)
Q Consensus 153 ~~ke~~~l~~~~~~Lk~~~~~L~~Ene~L~~E 184 (333)
++.-....-.....|++.|..|++||++|..|
T Consensus 152 irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 152 IRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 238
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.52 E-value=57 Score=22.91 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCchhhhhhhhhhH
Q 019954 123 KIQLAKDLGLQPRQVAIWFQNRR 145 (333)
Q Consensus 123 r~~LA~~LgLs~rQVkvWFQNRR 145 (333)
..+||+.+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987754
No 239
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.39 E-value=62 Score=29.48 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019954 156 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 193 (333)
Q Consensus 156 e~~~l~~~~~~Lk~~~~~L~~Ene~L~~E~~~l~~~l~ 193 (333)
.++.+...++.++.....+.+|+..+++++.+|+.++.
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666666666666666666666655433
No 240
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=20.24 E-value=86 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 019954 172 DNLFKEKEKLKAEVLKLTDKLQVK 195 (333)
Q Consensus 172 ~~L~~Ene~L~~E~~~l~~~l~~~ 195 (333)
+.+.+++..|+.++..|+.+|...
T Consensus 75 ~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 75 LSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhh
Confidence 345566778888888888877643
No 241
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.19 E-value=1.3e+02 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=11.4
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHH
Q 019954 163 SYNSLKADYDNLFKEKEKLKAEVL 186 (333)
Q Consensus 163 ~~~~Lk~~~~~L~~Ene~L~~E~~ 186 (333)
....|..+.+.|..+++.|+.++.
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555443
Done!