Query 019956
Match_columns 333
No_of_seqs 207 out of 1079
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 3E-06 1E-10 66.6 9.8 70 123-192 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.1 3.2E-06 1.1E-10 69.0 5.9 69 124-192 35-104 (137)
3 3b5d_A Multidrug transporter E 96.3 0.0085 2.9E-07 46.6 6.4 57 276-332 34-91 (110)
4 2i68_A Protein EMRE; transmemb 96.2 0.0039 1.3E-07 50.6 4.0 57 276-332 34-91 (137)
5 3b9w_A Ammonium transporter fa 7.0 1.3E+03 0.046 21.2 8.7 71 157-228 150-230 (407)
6 7cei_B Protein (colicin E7 imm 5.9 1.8E+02 0.0061 24.4 1.0 31 1-34 54-84 (206)
7 1m45_B IQ2, IQ2 motif from MYO 5.6 4.3E+02 0.015 14.0 2.1 17 289-305 2-18 (26)
8 2ls4_A High affinity copper up 7.1 1.5E+02 0.005 16.4 0.0 18 306-323 6-23 (26)
9 1ejp_A Syndecan-4; symmetric-p 4.1 3.9E+02 0.013 14.9 1.3 11 4-14 2-12 (28)
10 3arc_T Photosystem II reaction 4.0 7E+02 0.024 14.4 3.5 17 310-326 13-29 (32)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.33 E-value=3e-06 Score=66.56 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (333)
Q Consensus 123 ~ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~ 192 (333)
..-.+.|.++..+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|+..+...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455688889999999999999988777 89999999999999999999999999999999999988764
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.12 E-value=3.2e-06 Score=69.03 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956 124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (333)
Q Consensus 124 ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~ 192 (333)
+-.+.|.+...+...+++++|++....+ ..+.|+++++++++++||++++.||+|+.+.++|+.++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4445688899999999999999977776 89999999999999999999999999999999999998764
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.29 E-value=0.0085 Score=46.59 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956 276 VLMILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGS 332 (333)
Q Consensus 276 ~~~i~~~a~gg~~v~~v~k~~~~i~k~~~-~~~~~v~t~lls~~lfge~lt~~~~lG~ 332 (333)
...++...+...+....+|+.|....... +..++++++++++++|||++|...++|.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi 91 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34444556666777888998887766565 7889999999999999999999999885
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.17 E-value=0.0039 Score=50.58 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956 276 VLMILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGS 332 (333)
Q Consensus 276 ~~~i~~~a~gg~~v~~v~k~~~~i~k~~~-~~~~~v~t~lls~~lfge~lt~~~~lG~ 332 (333)
++.++..+++..+....+|+.+....... +.+++++++++|+++|||++|+.+++|.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi 91 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM 91 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44555667777788889999887766666 7899999999999999999999999985
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=6.98 E-value=1.3e+03 Score=21.22 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCccCH-----HHHHHHHHHHhhhhccc-----ccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019956 157 ISTGVLYRIILKKKLSE-----IQWAAFILLCCGCTTAQ-----LNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAI 226 (333)
Q Consensus 157 l~talls~l~Lkekls~-----~qw~al~ll~~Gv~~v~-----~~~~~~~~~~~~~~G~~l~l~aa~~sala~v~~e~~ 226 (333)
-..++...++|++|... .+--.+.+.++|..+.= .++... .+.......+=+.+++..+++.....++.
T Consensus 150 G~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl~-~~~~~~~a~~NT~lAaaag~l~~~~~~~~ 228 (407)
T 3b9w_A 150 AYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAIV-PFEQMPQTIVNTLLALCGATLATYFLSAL 228 (407)
T ss_dssp HHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTS-CGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhhc-cchhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45677777888876422 12334455555554431 222211 11122345556677888888888888776
Q ss_pred hh
Q 019956 227 MK 228 (333)
Q Consensus 227 lk 228 (333)
.+
T Consensus 229 ~~ 230 (407)
T 3b9w_A 229 FH 230 (407)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 6
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=5.95 E-value=1.8e+02 Score=24.36 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=5.8
Q ss_pred CcccccccccCCCCCCCccccccccCCCCCcccc
Q 019956 1 MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNV 34 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (333)
||-||-|.+++-+. ..++-+++||..|+-.+
T Consensus 54 ~e~rk~ke~~~~~a---~~kl~~espR~~PGvvT 84 (206)
T 7cei_B 54 LERRKQKENKEKDA---KAKLDKESKRNKPGKAT 84 (206)
T ss_dssp --------------------------CCCCCBCB
T ss_pred HHHHHhhhhhhhhh---HHHhhhhccccCCCeee
Confidence 56777665544332 44567777888887754
No 7
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=5.60 E-value=4.3e+02 Score=13.97 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=12.6
Q ss_pred HHHHhhhhhhHHHHHHH
Q 019956 289 VSMVMKYADNIVKVYST 305 (333)
Q Consensus 289 v~~v~k~~~~i~k~~~~ 305 (333)
++..+||..+-.|+|..
T Consensus 2 isqaikylqnnikgfii 18 (26)
T 1m45_B 2 ISQAIKYLQNNIKGFII 18 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccceEEE
Confidence 35667888888888764
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.15 E-value=1.5e+02 Score=16.39 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 019956 306 SVAMLLTAVVSVFLFGFH 323 (333)
Q Consensus 306 ~~~~v~t~lls~~lfge~ 323 (333)
.+++++.+.++.++|+.+
T Consensus 6 ~iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLFSWK 23 (26)
Confidence 345666667777777654
No 9
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=4.12 E-value=3.9e+02 Score=14.86 Aligned_cols=11 Identities=36% Similarity=0.148 Sum_probs=6.9
Q ss_pred cccccccCCCC
Q 019956 4 RKIKDEDNDGG 14 (333)
Q Consensus 4 ~~~~~~~~~~~ 14 (333)
++-|||++|.-
T Consensus 2 mrKKDEGSY~L 12 (28)
T 1ejp_A 2 MKKKDEGSYDL 12 (28)
T ss_dssp CSCCCCCCCCC
T ss_pred ccccccccccc
Confidence 34577777655
No 10
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.02 E-value=7e+02 Score=14.37 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCCcch
Q 019956 310 LLTAVVSVFLFGFHLSL 326 (333)
Q Consensus 310 v~t~lls~~lfge~lt~ 326 (333)
.+.++.-.++|.|+|..
T Consensus 13 tlgiiFFAI~FRePPri 29 (32)
T 3arc_T 13 IIALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHhhhhcCCCCC
Confidence 34455566678888764
Done!