Query 019956
Match_columns 333
No_of_seqs 207 out of 1079
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 09:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019956.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019956hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 12.9 2.8E+02 0.021 21.9 7.5 63 120-186 3-65 (248)
2 d1c4qa_ b.40.2.1 (A:) Verotoxi 4.8 42 0.0031 20.9 -1.2 23 1-23 9-31 (69)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 3.4 3.6E+02 0.026 13.9 2.1 17 303-319 14-30 (34)
4 d1xbta2 g.39.1.14 (A:151-191) 3.0 2.1E+02 0.016 15.9 1.0 21 3-25 14-34 (41)
5 d1mcvi_ g.3.2.1 (I:) Trypsin i 2.6 3.4E+02 0.025 13.3 1.4 11 1-11 4-14 (28)
6 d1x61a1 g.39.1.3 (A:8-34) Thyr 1.9 4.3E+02 0.032 12.8 1.1 15 7-21 4-18 (27)
7 d1vf5c3 f.23.23.1 (C:250-286) 1.9 6.1E+02 0.044 13.6 1.9 16 203-218 6-21 (37)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 1.8 9.6E+02 0.07 14.9 3.5 29 117-145 62-90 (91)
9 d1ijda_ f.3.1.1 (A:) Light-har 1.5 8.8E+02 0.064 13.6 2.9 18 201-218 11-28 (46)
10 d1w9ea1 b.36.1.1 (A:110-194) S 1.4 4.8E+02 0.035 16.1 0.9 17 1-17 1-17 (85)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=12.91 E-value=2.8e+02 Score=21.86 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=32.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhh
Q 019956 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGC 186 (333)
Q Consensus 120 ~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv 186 (333)
+++++.+++.++.-.+....+..=.... .-...+.+++.-++++.+|.-+.||+-=.+.+..+
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLF----AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHH----HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHH----HHHHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 3455666555544333333333222211 22334566666777788888888877554444433
No 2
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=42 Score=20.85 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.0
Q ss_pred CcccccccccCCCCCCCcccccc
Q 019956 1 MEYRKIKDEDNDGGGSSSGDLES 23 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (333)
.||.|+.|+|....++++++..-
T Consensus 9 iefskyneddtftvkv~gkeywt 31 (69)
T d1c4qa_ 9 VEYTKYNDDDTFTVKVGDKELAT 31 (69)
T ss_dssp EEEEEECTTSCEEEEETTEEEEE
T ss_pred EEEEeecCCCceEEeecCceehh
Confidence 37888888888766666666543
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.36 E-value=3.6e+02 Score=13.86 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019956 303 YSTSVAMLLTAVVSVFL 319 (333)
Q Consensus 303 ~~~~~~~v~t~lls~~l 319 (333)
..++..++++++..|+.
T Consensus 14 gits~glv~aa~atwfv 30 (34)
T d2p7tc1 14 GITSFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHhh
Confidence 34555666666666654
No 4
>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.01 E-value=2.1e+02 Score=15.85 Aligned_cols=21 Identities=10% Similarity=-0.076 Sum_probs=12.1
Q ss_pred ccccccccCCCCCCCcccccccc
Q 019956 3 YRKIKDEDNDGGGSSSGDLESLR 25 (333)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (333)
+|++.|++.+. +|++|.=.|.
T Consensus 14 ~R~~~~~~~v~--IGg~d~Y~~~ 34 (41)
T d1xbta2 14 KRLGTEKEVEV--IGGADKYHSV 34 (41)
T ss_dssp EECSCCCSSCC--CCSTTTEEEE
T ss_pred EEEcCCCCEEE--ECCCCcEEeh
Confidence 57776665554 4666654443
No 5
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=2.64 E-value=3.4e+02 Score=13.35 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=6.9
Q ss_pred CcccccccccC
Q 019956 1 MEYRKIKDEDN 11 (333)
Q Consensus 1 ~~~~~~~~~~~ 11 (333)
.||+|-|...+
T Consensus 4 leym~c~~dsd 14 (28)
T d1mcvi_ 4 LEYMRCKQDSD 14 (28)
T ss_dssp CCCCBCSSGGG
T ss_pred chhhhcccccc
Confidence 47887765444
No 6
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.92 E-value=4.3e+02 Score=12.75 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=8.2
Q ss_pred ccccCCCCCCCcccc
Q 019956 7 KDEDNDGGGSSSGDL 21 (333)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (333)
+.||-+.+|+|.-.+
T Consensus 4 cgedvvgdgagvval 18 (27)
T d1x61a1 4 CGEDVVGDGAGVVAL 18 (27)
T ss_dssp SCSCCCSSSCCEECS
T ss_pred cccccccCCcceEEE
Confidence 345566666665433
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.91 E-value=6.1e+02 Score=13.62 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 019956 203 LQGWIMAIVMALLSGF 218 (333)
Q Consensus 203 ~~G~~l~l~aa~~sal 218 (333)
..|.+..+++..+.=+
T Consensus 6 v~gl~~F~~~v~laQi 21 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=1.76 E-value=9.6e+02 Score=14.91 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHcCCh
Q 019956 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDA 145 (333)
Q Consensus 117 ~~~~~~~ipally~~~n~l~~~al~~l~~ 145 (333)
-+.....+|.++-..--...+.++..+||
T Consensus 62 lEi~WtiIP~iil~~iav~s~~~~~~lDp 90 (91)
T d1fftb2 62 VEAVVWTVPILIIIFLAVLTWKTTHALEP 90 (91)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46666778887644433334444434444
No 9
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=1.52 E-value=8.8e+02 Score=13.55 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=13.4
Q ss_pred chhhHHHHHHHHHHHHHH
Q 019956 201 TPLQGWIMAIVMALLSGF 218 (333)
Q Consensus 201 ~~~~G~~l~l~aa~~sal 218 (333)
++..|+-+.++++...++
T Consensus 11 ~PtvG~Pl~LgsVav~s~ 28 (46)
T d1ijda_ 11 PPAFGLPLMLGAVAITAL 28 (46)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhHHHHHHHHHH
Confidence 467788888888777665
No 10
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.39 E-value=4.8e+02 Score=16.06 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred CcccccccccCCCCCCC
Q 019956 1 MEYRKIKDEDNDGGGSS 17 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (333)
||.|++.-.++-++|-|
T Consensus 1 ~~pr~v~l~k~~~~~lG 17 (85)
T d1w9ea1 1 MDPREVILCKDQDGKIG 17 (85)
T ss_dssp CCCEEEEEECCTTSCCS
T ss_pred CCCEEEEEEeCCCCCEe
Done!