Query 019957
Match_columns 333
No_of_seqs 334 out of 3591
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 4E-27 8.7E-32 202.9 20.2 188 128-333 28-238 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 4.6E-28 1E-32 210.9 12.8 187 128-332 24-233 (233)
3 PLN02233 ubiquinone biosynthes 99.9 1.3E-23 2.9E-28 186.8 21.2 173 159-331 66-260 (261)
4 PRK11088 rrmA 23S rRNA methylt 99.9 8.7E-24 1.9E-28 189.5 14.9 178 60-277 2-184 (272)
5 KOG1540 Ubiquinone biosynthesi 99.9 5.6E-23 1.2E-27 173.9 18.4 176 128-318 77-278 (296)
6 PLN02244 tocopherol O-methyltr 99.9 1.5E-21 3.3E-26 180.0 22.6 153 165-321 117-278 (340)
7 TIGR02752 MenG_heptapren 2-hep 99.9 2.2E-21 4.8E-26 170.0 20.5 174 156-332 35-231 (231)
8 PLN02396 hexaprenyldihydroxybe 99.9 3.2E-22 6.9E-27 181.6 14.8 151 165-319 130-287 (322)
9 PTZ00098 phosphoethanolamine N 99.9 9.4E-21 2E-25 168.7 19.9 165 149-321 35-202 (263)
10 PRK15068 tRNA mo(5)U34 methylt 99.9 8.5E-21 1.8E-25 173.4 18.3 161 156-320 112-273 (322)
11 PF13489 Methyltransf_23: Meth 99.9 9.8E-22 2.1E-26 162.2 11.0 148 156-318 11-160 (161)
12 PRK11036 putative S-adenosyl-L 99.9 1.3E-20 2.9E-25 167.5 18.6 163 158-325 37-211 (255)
13 TIGR00452 methyltransferase, p 99.9 1.5E-20 3.2E-25 170.1 18.8 162 156-321 111-273 (314)
14 COG2227 UbiG 2-polyprenyl-3-me 99.9 6.4E-22 1.4E-26 167.7 8.6 149 165-319 58-213 (243)
15 PRK11873 arsM arsenite S-adeno 99.8 2.2E-19 4.8E-24 161.2 21.5 156 163-321 74-230 (272)
16 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.9E-19 4E-24 164.1 20.2 145 165-321 112-256 (340)
17 PRK14103 trans-aconitate 2-met 99.8 5.7E-20 1.2E-24 163.4 16.4 152 156-318 19-181 (255)
18 PRK00216 ubiE ubiquinone/menaq 99.8 4.2E-19 9.1E-24 156.1 21.6 176 156-333 41-239 (239)
19 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.6E-20 5.6E-25 164.7 13.7 182 148-333 36-243 (247)
20 PRK05785 hypothetical protein; 99.8 1.4E-19 3E-24 157.6 17.7 152 167-332 52-224 (226)
21 PF08003 Methyltransf_9: Prote 99.8 6E-20 1.3E-24 161.1 14.8 172 135-320 94-266 (315)
22 PF13847 Methyltransf_31: Meth 99.8 5.9E-20 1.3E-24 150.5 12.5 143 166-313 3-152 (152)
23 PLN02336 phosphoethanolamine N 99.8 7.7E-19 1.7E-23 169.8 21.6 159 154-320 254-413 (475)
24 PRK10258 biotin biosynthesis p 99.8 4.1E-19 9E-24 157.6 18.1 150 155-316 31-182 (251)
25 COG2230 Cfa Cyclopropane fatty 99.8 8E-19 1.7E-23 154.1 18.8 161 155-321 61-223 (283)
26 TIGR00740 methyltransferase, p 99.8 2E-19 4.4E-24 158.3 14.8 162 166-331 53-238 (239)
27 PRK08317 hypothetical protein; 99.8 2.2E-18 4.8E-23 151.4 20.3 162 156-321 9-176 (241)
28 PF08241 Methyltransf_11: Meth 99.8 1.6E-19 3.5E-24 135.2 11.0 95 171-272 1-95 (95)
29 PRK11207 tellurite resistance 99.8 1E-18 2.2E-23 149.2 16.7 146 157-319 21-168 (197)
30 smart00828 PKS_MT Methyltransf 99.8 6.9E-19 1.5E-23 153.5 16.0 143 169-321 2-144 (224)
31 PF02353 CMAS: Mycolic acid cy 99.8 9E-19 2E-23 156.0 16.1 162 154-321 50-217 (273)
32 KOG1270 Methyltransferases [Co 99.8 1.5E-19 3.3E-24 154.2 8.8 147 167-319 90-247 (282)
33 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 9.9E-18 2.1E-22 145.8 19.9 171 157-332 30-223 (223)
34 TIGR02072 BioC biotin biosynth 99.8 1.6E-17 3.5E-22 145.9 18.0 139 166-318 34-173 (240)
35 PRK01683 trans-aconitate 2-met 99.8 6.7E-18 1.4E-22 150.4 15.1 152 156-316 21-182 (258)
36 PF12847 Methyltransf_18: Meth 99.8 2.5E-18 5.5E-23 133.2 10.8 106 166-274 1-111 (112)
37 TIGR02716 C20_methyl_CrtF C-20 99.8 5.1E-17 1.1E-21 148.3 19.9 159 156-319 139-304 (306)
38 KOG4300 Predicted methyltransf 99.8 1.4E-17 3.1E-22 136.9 13.8 157 158-321 68-232 (252)
39 PF07021 MetW: Methionine bios 99.8 8.2E-18 1.8E-22 138.8 12.4 149 156-321 5-167 (193)
40 TIGR02021 BchM-ChlM magnesium 99.8 1.6E-17 3.4E-22 144.4 14.0 158 156-320 43-205 (219)
41 PRK06202 hypothetical protein; 99.8 3.9E-17 8.4E-22 143.2 16.2 148 163-319 57-220 (232)
42 PRK00107 gidB 16S rRNA methylt 99.7 3.2E-16 6.8E-21 132.0 19.8 123 167-320 46-168 (187)
43 PRK12335 tellurite resistance 99.7 9.8E-17 2.1E-21 144.9 17.6 137 165-319 119-257 (287)
44 TIGR00477 tehB tellurite resis 99.7 9.5E-17 2.1E-21 136.8 16.3 145 157-319 21-167 (195)
45 PRK05134 bifunctional 3-demeth 99.7 1.1E-16 2.4E-21 140.4 16.1 159 155-319 37-203 (233)
46 PRK08287 cobalt-precorrin-6Y C 99.7 9.2E-16 2E-20 130.0 19.5 134 156-319 21-154 (187)
47 TIGR01983 UbiG ubiquinone bios 99.7 2.1E-16 4.5E-21 137.8 15.9 148 166-320 45-202 (224)
48 PRK07580 Mg-protoporphyrin IX 99.7 1.9E-16 4.1E-21 138.6 13.1 155 156-321 50-214 (230)
49 PF08242 Methyltransf_12: Meth 99.7 7E-18 1.5E-22 127.8 2.3 97 171-270 1-99 (99)
50 TIGR00537 hemK_rel_arch HemK-r 99.7 2.1E-15 4.6E-20 126.8 17.7 140 156-325 9-169 (179)
51 TIGR02081 metW methionine bios 99.7 1.1E-15 2.4E-20 130.3 15.5 148 156-321 5-167 (194)
52 TIGR00138 gidB 16S rRNA methyl 99.7 1.8E-15 4E-20 127.0 16.4 101 166-274 42-142 (181)
53 PLN02232 ubiquinone biosynthes 99.7 5.3E-16 1.1E-20 127.9 12.8 126 194-319 1-145 (160)
54 PLN02585 magnesium protoporphy 99.7 1.6E-15 3.5E-20 137.5 16.2 160 153-321 128-299 (315)
55 PLN02336 phosphoethanolamine N 99.7 5.9E-16 1.3E-20 149.7 13.8 149 156-318 27-179 (475)
56 PRK11705 cyclopropane fatty ac 99.7 1.7E-15 3.7E-20 141.5 16.4 151 156-321 157-312 (383)
57 PF03848 TehB: Tellurite resis 99.7 1.9E-15 4E-20 126.6 14.9 143 158-318 22-166 (192)
58 PRK00121 trmB tRNA (guanine-N( 99.7 8.8E-16 1.9E-20 131.5 13.2 108 166-276 40-158 (202)
59 TIGR03840 TMPT_Se_Te thiopurin 99.7 4.6E-15 9.9E-20 127.7 16.6 139 165-317 33-183 (213)
60 PRK04266 fibrillarin; Provisio 99.7 1.7E-14 3.6E-19 125.2 20.1 148 161-332 67-225 (226)
61 PF13649 Methyltransf_25: Meth 99.7 2.7E-16 5.9E-21 119.6 7.9 95 170-268 1-101 (101)
62 PRK00517 prmA ribosomal protei 99.7 5.6E-15 1.2E-19 130.8 17.4 133 165-333 118-250 (250)
63 PF05401 NodS: Nodulation prot 99.7 8.6E-15 1.9E-19 121.2 17.0 153 159-333 36-197 (201)
64 TIGR02469 CbiT precorrin-6Y C5 99.7 4.5E-15 9.8E-20 116.8 14.4 114 156-275 9-123 (124)
65 PRK00377 cbiT cobalt-precorrin 99.6 2.3E-14 5E-19 122.5 19.7 133 156-315 30-164 (198)
66 PLN03075 nicotianamine synthas 99.6 8E-15 1.7E-19 130.5 17.1 107 166-275 123-234 (296)
67 TIGR03587 Pse_Me-ase pseudamin 99.6 5.2E-15 1.1E-19 126.7 14.2 102 166-278 43-146 (204)
68 COG4106 Tam Trans-aconitate me 99.6 1.3E-15 2.7E-20 126.5 9.4 150 157-315 21-180 (257)
69 KOG1271 Methyltransferases [Ge 99.6 9.1E-15 2E-19 118.1 14.1 133 168-325 69-209 (227)
70 PRK06922 hypothetical protein; 99.6 4.3E-15 9.2E-20 143.6 13.5 107 165-275 417-538 (677)
71 PRK13944 protein-L-isoaspartat 99.6 1.4E-14 3.1E-19 124.4 15.1 113 154-274 60-173 (205)
72 PRK13255 thiopurine S-methyltr 99.6 2.2E-14 4.7E-19 124.0 16.2 140 165-318 36-187 (218)
73 PRK14968 putative methyltransf 99.6 7.2E-14 1.6E-18 118.3 18.1 138 156-319 13-171 (188)
74 TIGR00091 tRNA (guanine-N(7)-) 99.6 9.5E-15 2E-19 124.4 12.4 109 166-277 16-135 (194)
75 COG2264 PrmA Ribosomal protein 99.6 9.3E-14 2E-18 123.3 17.2 147 155-333 153-300 (300)
76 PRK13942 protein-L-isoaspartat 99.6 4.4E-14 9.5E-19 121.9 14.8 114 152-274 62-176 (212)
77 COG4976 Predicted methyltransf 99.6 2.7E-15 5.8E-20 125.5 6.6 170 146-333 106-286 (287)
78 COG2242 CobL Precorrin-6B meth 99.6 3.5E-13 7.6E-18 110.8 18.9 139 152-320 20-160 (187)
79 smart00138 MeTrc Methyltransfe 99.6 2.1E-14 4.7E-19 127.8 12.0 109 166-274 99-242 (264)
80 KOG2361 Predicted methyltransf 99.6 1.2E-14 2.5E-19 122.9 9.6 149 168-320 73-236 (264)
81 PF05175 MTS: Methyltransferas 99.6 8.1E-14 1.8E-18 116.2 14.7 118 154-275 19-141 (170)
82 PTZ00146 fibrillarin; Provisio 99.6 2.7E-13 5.7E-18 120.3 18.2 143 162-325 128-275 (293)
83 TIGR03534 RF_mod_PrmC protein- 99.6 2E-13 4.2E-18 121.1 17.6 139 154-320 76-240 (251)
84 PRK14121 tRNA (guanine-N(7)-)- 99.6 5.4E-14 1.2E-18 129.6 14.0 117 158-277 114-238 (390)
85 PF06325 PrmA: Ribosomal prote 99.6 1.1E-13 2.3E-18 124.1 15.5 136 165-333 160-295 (295)
86 PRK15001 SAM-dependent 23S rib 99.6 2.5E-13 5.3E-18 125.8 18.1 121 153-274 215-340 (378)
87 PRK14967 putative methyltransf 99.6 3.8E-13 8.3E-18 117.1 18.4 161 164-333 34-223 (223)
88 TIGR00080 pimt protein-L-isoas 99.6 1.1E-13 2.4E-18 119.8 14.6 112 154-274 65-177 (215)
89 TIGR01177 conserved hypothetic 99.5 1.7E-13 3.7E-18 126.2 16.2 137 152-319 168-313 (329)
90 PRK09489 rsmC 16S ribosomal RN 99.5 5.7E-13 1.2E-17 122.6 19.6 116 154-275 184-304 (342)
91 TIGR00406 prmA ribosomal prote 99.5 1.8E-13 3.8E-18 123.7 15.7 130 165-325 158-287 (288)
92 PRK07402 precorrin-6B methylas 99.5 6.7E-13 1.5E-17 113.3 17.8 114 156-276 30-144 (196)
93 TIGR03533 L3_gln_methyl protei 99.5 1.1E-12 2.4E-17 118.0 19.2 130 165-321 120-274 (284)
94 TIGR00536 hemK_fam HemK family 99.5 9.2E-13 2E-17 118.8 18.5 126 168-319 116-267 (284)
95 PF13659 Methyltransf_26: Meth 99.5 1.2E-13 2.5E-18 107.8 9.9 107 167-276 1-117 (117)
96 PRK11188 rrmJ 23S rRNA methylt 99.5 3.2E-13 6.9E-18 116.2 13.3 99 165-277 50-168 (209)
97 PRK11805 N5-glutamine S-adenos 99.5 1.5E-12 3.2E-17 118.3 18.2 125 168-319 135-284 (307)
98 TIGR03438 probable methyltrans 99.5 7.1E-13 1.5E-17 120.5 15.7 107 166-274 63-177 (301)
99 PRK00312 pcm protein-L-isoaspa 99.5 8.5E-13 1.8E-17 114.1 15.0 113 152-275 64-176 (212)
100 KOG1541 Predicted protein carb 99.5 4.1E-13 9E-18 111.8 10.7 114 152-275 34-161 (270)
101 PRK14966 unknown domain/N5-glu 99.5 6.5E-12 1.4E-16 116.7 19.3 127 166-319 251-403 (423)
102 PF05891 Methyltransf_PK: AdoM 99.5 4.6E-13 1E-17 112.9 10.5 149 166-325 55-205 (218)
103 COG2519 GCD14 tRNA(1-methylade 99.5 2.1E-12 4.5E-17 110.9 14.5 117 153-277 81-198 (256)
104 PRK09328 N5-glutamine S-adenos 99.5 8.4E-12 1.8E-16 112.2 19.3 140 153-319 95-260 (275)
105 PHA03411 putative methyltransf 99.5 3.3E-12 7.2E-17 112.2 15.9 143 147-316 47-209 (279)
106 PF05219 DREV: DREV methyltran 99.5 2E-12 4.2E-17 111.6 14.2 145 166-325 94-243 (265)
107 PF00891 Methyltransf_2: O-met 99.4 3.5E-12 7.5E-17 112.5 15.8 140 158-310 92-241 (241)
108 COG2813 RsmC 16S RNA G1207 met 99.4 1.2E-11 2.6E-16 109.3 18.6 120 151-275 143-267 (300)
109 COG2518 Pcm Protein-L-isoaspar 99.4 2.2E-12 4.8E-17 108.4 13.4 112 153-275 59-170 (209)
110 COG4123 Predicted O-methyltran 99.4 4.9E-12 1.1E-16 109.5 15.6 138 157-319 35-192 (248)
111 PRK13256 thiopurine S-methyltr 99.4 6.6E-12 1.4E-16 108.2 16.3 133 165-311 42-188 (226)
112 PF06080 DUF938: Protein of un 99.4 7.7E-12 1.7E-16 105.0 15.1 161 154-319 14-190 (204)
113 PF01135 PCMT: Protein-L-isoas 99.4 1.4E-12 3E-17 111.6 10.9 115 152-275 58-173 (209)
114 PF05148 Methyltransf_8: Hypot 99.4 2.4E-12 5.2E-17 107.5 11.8 158 129-332 38-197 (219)
115 PF12147 Methyltransf_20: Puta 99.4 1.2E-11 2.6E-16 108.0 15.9 161 165-332 134-311 (311)
116 TIGR00563 rsmB ribosomal RNA s 99.4 5E-12 1.1E-16 120.4 14.6 127 151-279 223-373 (426)
117 PF08704 GCD14: tRNA methyltra 99.4 1.3E-11 2.9E-16 107.7 15.8 140 151-319 25-169 (247)
118 PRK01544 bifunctional N5-gluta 99.4 1.5E-11 3.2E-16 119.1 17.4 127 167-319 139-291 (506)
119 PF05724 TPMT: Thiopurine S-me 99.4 9E-12 2E-16 107.5 14.0 172 135-320 6-189 (218)
120 PRK14901 16S rRNA methyltransf 99.4 7.2E-12 1.6E-16 119.6 14.7 124 151-277 237-387 (434)
121 PRK13943 protein-L-isoaspartat 99.4 7.7E-12 1.7E-16 113.8 13.7 112 154-274 68-180 (322)
122 TIGR03704 PrmC_rel_meth putati 99.4 3.9E-11 8.5E-16 106.1 17.6 132 167-327 87-246 (251)
123 cd02440 AdoMet_MTases S-adenos 99.4 7.7E-12 1.7E-16 94.0 11.2 101 169-273 1-103 (107)
124 KOG3045 Predicted RNA methylas 99.3 2.5E-11 5.4E-16 103.6 13.6 156 129-332 146-303 (325)
125 PRK14903 16S rRNA methyltransf 99.3 2.1E-11 4.5E-16 116.0 14.2 129 151-282 222-374 (431)
126 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.3E-11 4.9E-16 108.6 13.5 120 157-279 62-204 (264)
127 PRK10901 16S rRNA methyltransf 99.3 3.1E-11 6.8E-16 115.0 15.4 122 152-277 230-375 (427)
128 PF02390 Methyltransf_4: Putat 99.3 2.3E-11 5.1E-16 103.2 12.3 106 169-277 20-136 (195)
129 COG2890 HemK Methylase of poly 99.3 2.6E-10 5.7E-15 102.2 19.6 123 169-319 113-261 (280)
130 KOG3010 Methyltransferase [Gen 99.3 1.6E-11 3.5E-16 104.1 10.7 104 169-277 36-140 (261)
131 PRK14904 16S rRNA methyltransf 99.3 5.8E-11 1.3E-15 113.7 14.8 119 156-278 240-381 (445)
132 PRK04457 spermidine synthase; 99.3 3.8E-11 8.3E-16 106.8 12.2 110 165-276 65-179 (262)
133 TIGR00438 rrmJ cell division p 99.3 5.8E-11 1.3E-15 100.6 12.4 101 161-275 27-147 (188)
134 PRK14902 16S rRNA methyltransf 99.3 6.4E-11 1.4E-15 113.5 13.7 122 152-277 236-382 (444)
135 PRK00811 spermidine synthase; 99.2 2.1E-10 4.6E-15 103.2 14.9 109 166-274 76-191 (283)
136 smart00650 rADc Ribosomal RNA 99.2 1.7E-10 3.6E-15 96.1 13.1 109 156-274 3-113 (169)
137 PLN02781 Probable caffeoyl-CoA 99.2 1.1E-10 2.4E-15 102.2 12.0 118 153-275 55-179 (234)
138 PLN02672 methionine S-methyltr 99.2 4.6E-10 9.9E-15 115.5 17.7 134 167-323 119-305 (1082)
139 COG0220 Predicted S-adenosylme 99.2 1.3E-10 2.8E-15 100.4 11.6 114 161-277 43-167 (227)
140 KOG2940 Predicted methyltransf 99.2 3.1E-11 6.7E-16 101.2 7.2 146 167-319 73-225 (325)
141 PF11968 DUF3321: Putative met 99.2 3.6E-10 7.8E-15 95.1 13.4 144 151-330 32-190 (219)
142 PRK01581 speE spermidine synth 99.2 3.6E-10 7.8E-15 103.1 14.3 135 166-319 150-295 (374)
143 TIGR00417 speE spermidine synt 99.2 9.2E-10 2E-14 98.6 15.4 109 166-274 72-186 (270)
144 PRK13168 rumA 23S rRNA m(5)U19 99.2 8.7E-10 1.9E-14 105.7 15.7 141 153-325 284-428 (443)
145 PRK11783 rlmL 23S rRNA m(2)G24 99.1 5.5E-10 1.2E-14 112.5 13.9 130 166-320 538-679 (702)
146 PRK15128 23S rRNA m(5)C1962 me 99.1 5.4E-10 1.2E-14 104.8 12.6 108 166-276 220-341 (396)
147 PF03291 Pox_MCEL: mRNA cappin 99.1 2.7E-10 5.8E-15 104.2 10.2 112 166-278 62-190 (331)
148 COG2521 Predicted archaeal met 99.1 2E-10 4.4E-15 96.8 8.5 155 160-333 128-287 (287)
149 COG4122 Predicted O-methyltran 99.1 6.7E-10 1.5E-14 94.9 11.9 122 152-278 45-170 (219)
150 PRK03612 spermidine synthase; 99.1 6.7E-10 1.4E-14 108.2 12.8 131 166-314 297-437 (521)
151 PF07942 N2227: N2227-like pro 99.1 3.5E-09 7.6E-14 93.3 15.3 147 166-321 56-242 (270)
152 KOG3178 Hydroxyindole-O-methyl 99.1 1.8E-09 3.8E-14 97.1 13.4 139 168-319 179-328 (342)
153 PHA03412 putative methyltransf 99.1 1.3E-09 2.9E-14 93.7 12.1 113 146-269 31-158 (241)
154 PLN02476 O-methyltransferase 99.1 1.9E-09 4.2E-14 95.7 12.9 118 153-275 105-229 (278)
155 PRK10909 rsmD 16S rRNA m(2)G96 99.1 3.1E-09 6.8E-14 90.3 13.5 121 151-276 37-161 (199)
156 PF01596 Methyltransf_3: O-met 99.1 1.5E-09 3.2E-14 92.7 11.5 116 156-276 35-157 (205)
157 PRK03522 rumB 23S rRNA methylu 99.1 3.7E-09 8.1E-14 96.8 14.6 113 154-274 161-274 (315)
158 PF10294 Methyltransf_16: Puta 99.0 2.5E-09 5.5E-14 89.2 11.6 113 164-277 43-159 (173)
159 COG1041 Predicted DNA modifica 99.0 1.2E-08 2.5E-13 92.1 16.2 139 151-321 182-330 (347)
160 PLN02366 spermidine synthase 99.0 3.5E-09 7.5E-14 96.0 12.8 109 166-274 91-206 (308)
161 TIGR00479 rumA 23S rRNA (uraci 99.0 5.6E-09 1.2E-13 99.9 15.0 113 154-274 280-396 (431)
162 KOG2904 Predicted methyltransf 99.0 6.2E-09 1.3E-13 89.9 12.0 126 150-277 129-288 (328)
163 KOG1975 mRNA cap methyltransfe 99.0 2.9E-09 6.3E-14 93.9 9.3 113 165-278 116-241 (389)
164 PF01170 UPF0020: Putative RNA 99.0 1.8E-08 3.9E-13 84.5 13.8 120 152-274 14-150 (179)
165 KOG2899 Predicted methyltransf 99.0 6.1E-09 1.3E-13 88.4 10.6 149 166-318 58-254 (288)
166 COG3963 Phospholipid N-methylt 99.0 1.9E-08 4E-13 80.8 12.6 123 147-277 29-159 (194)
167 PF03141 Methyltransf_29: Puta 99.0 1.1E-09 2.4E-14 102.5 6.4 144 151-319 98-251 (506)
168 KOG1499 Protein arginine N-met 99.0 2.5E-09 5.5E-14 95.9 8.4 104 165-272 59-165 (346)
169 PLN02589 caffeoyl-CoA O-methyl 98.9 7.6E-09 1.7E-13 90.7 10.9 117 153-274 66-190 (247)
170 PRK01544 bifunctional N5-gluta 98.9 6.4E-09 1.4E-13 100.9 10.7 108 166-276 347-464 (506)
171 PRK14896 ksgA 16S ribosomal RN 98.9 1.2E-08 2.5E-13 90.9 11.1 88 151-247 14-101 (258)
172 KOG1331 Predicted methyltransf 98.9 6.7E-09 1.5E-13 90.6 9.0 107 157-276 35-145 (293)
173 PRK11727 23S rRNA mA1618 methy 98.9 3.3E-08 7.1E-13 89.9 13.2 146 166-319 114-290 (321)
174 COG2263 Predicted RNA methylas 98.9 2.3E-08 5.1E-13 82.2 11.0 121 163-319 42-166 (198)
175 PTZ00338 dimethyladenosine tra 98.9 1.1E-08 2.4E-13 92.3 10.0 88 151-244 21-108 (294)
176 PRK00274 ksgA 16S ribosomal RN 98.9 1.4E-08 2.9E-13 91.1 10.3 87 151-245 27-113 (272)
177 KOG1269 SAM-dependent methyltr 98.9 1.1E-08 2.3E-13 94.4 9.5 143 133-278 70-219 (364)
178 PF05185 PRMT5: PRMT5 arginine 98.9 2.3E-08 4.9E-13 95.2 11.8 102 167-271 187-294 (448)
179 TIGR00755 ksgA dimethyladenosi 98.9 5.5E-08 1.2E-12 86.3 13.5 86 151-245 14-102 (253)
180 PRK10611 chemotaxis methyltran 98.8 2.8E-08 6E-13 89.0 11.4 108 167-274 116-262 (287)
181 TIGR02085 meth_trns_rumB 23S r 98.8 3.7E-08 8E-13 92.3 12.5 111 156-274 223-334 (374)
182 PRK04338 N(2),N(2)-dimethylgua 98.8 4.1E-08 8.8E-13 91.8 11.8 112 156-274 46-158 (382)
183 KOG3191 Predicted N6-DNA-methy 98.8 3.8E-07 8.2E-12 74.4 15.5 131 162-319 39-191 (209)
184 KOG1661 Protein-L-isoaspartate 98.8 6.2E-08 1.4E-12 80.7 10.1 114 156-275 70-194 (237)
185 KOG2915 tRNA(1-methyladenosine 98.8 4.7E-07 1E-11 78.4 15.5 111 155-272 94-208 (314)
186 TIGR00095 RNA methyltransferas 98.7 2.3E-07 5E-12 78.5 13.2 107 165-275 48-160 (189)
187 PF01739 CheR: CheR methyltran 98.7 4.7E-08 1E-12 82.9 8.8 109 166-274 31-175 (196)
188 PF02527 GidB: rRNA small subu 98.7 1.4E-07 3E-12 79.1 11.4 98 169-274 51-148 (184)
189 PF02475 Met_10: Met-10+ like- 98.7 6.3E-08 1.4E-12 82.1 9.5 100 165-271 100-199 (200)
190 PRK04148 hypothetical protein; 98.7 2E-07 4.3E-12 73.4 11.4 106 155-278 5-113 (134)
191 PF04672 Methyltransf_19: S-ad 98.7 2.1E-07 4.5E-12 81.6 12.4 158 156-318 57-233 (267)
192 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 2.4E-08 5.3E-13 87.6 6.0 158 166-332 56-256 (256)
193 KOG3987 Uncharacterized conser 98.7 8.4E-09 1.8E-13 85.5 2.5 113 151-277 94-210 (288)
194 PRK11933 yebU rRNA (cytosine-C 98.7 3E-07 6.5E-12 88.0 13.4 118 158-278 103-246 (470)
195 COG1092 Predicted SAM-dependen 98.7 2E-07 4.4E-12 86.6 11.5 109 167-277 218-339 (393)
196 PRK05031 tRNA (uracil-5-)-meth 98.7 4.6E-07 1E-11 84.5 13.5 111 153-274 194-320 (362)
197 PLN02823 spermine synthase 98.7 2.3E-07 5.1E-12 85.1 11.2 108 166-274 103-220 (336)
198 KOG1500 Protein arginine N-met 98.6 2E-07 4.3E-12 82.8 10.0 105 164-273 175-281 (517)
199 KOG3420 Predicted RNA methylas 98.6 7.4E-08 1.6E-12 75.5 6.0 87 156-247 38-124 (185)
200 PF09243 Rsm22: Mitochondrial 98.6 5.6E-07 1.2E-11 80.7 12.2 116 157-278 24-143 (274)
201 COG0421 SpeE Spermidine syntha 98.6 5E-07 1.1E-11 80.7 11.6 105 168-274 78-190 (282)
202 PF03602 Cons_hypoth95: Conser 98.6 2.1E-07 4.5E-12 78.2 8.5 125 149-277 23-156 (183)
203 COG2520 Predicted methyltransf 98.6 1.7E-06 3.6E-11 78.9 14.8 135 156-315 180-314 (341)
204 COG0030 KsgA Dimethyladenosine 98.6 3.1E-07 6.8E-12 80.4 9.6 87 151-244 15-102 (259)
205 TIGR02143 trmA_only tRNA (urac 98.6 1.1E-06 2.4E-11 81.7 13.9 111 153-274 185-311 (353)
206 KOG1663 O-methyltransferase [S 98.6 1.4E-06 2.9E-11 74.1 12.2 119 150-274 57-183 (237)
207 PF02384 N6_Mtase: N-6 DNA Met 98.5 7.4E-07 1.6E-11 81.6 11.5 131 146-277 26-186 (311)
208 PF01564 Spermine_synth: Sperm 98.5 3.1E-06 6.6E-11 74.7 14.7 111 166-276 76-193 (246)
209 TIGR00478 tly hemolysin TlyA f 98.5 9.3E-07 2E-11 76.7 10.8 132 165-320 74-216 (228)
210 PF10672 Methyltrans_SAM: S-ad 98.5 5.8E-07 1.2E-11 80.4 9.7 109 166-276 123-240 (286)
211 COG0500 SmtA SAM-dependent met 98.5 2.5E-06 5.4E-11 68.8 12.5 104 170-278 52-159 (257)
212 COG1352 CheR Methylase of chem 98.5 1.3E-06 2.8E-11 77.4 11.3 108 167-274 97-241 (268)
213 PF04816 DUF633: Family of unk 98.5 3.1E-06 6.7E-11 72.3 13.3 128 170-326 1-132 (205)
214 COG0144 Sun tRNA and rRNA cyto 98.5 3.6E-06 7.8E-11 78.2 14.7 128 152-282 142-296 (355)
215 COG0357 GidB Predicted S-adeno 98.4 7.2E-06 1.6E-10 70.1 13.8 128 167-321 68-195 (215)
216 KOG0820 Ribosomal RNA adenine 98.4 1.9E-06 4.2E-11 74.7 9.9 85 154-244 46-130 (315)
217 PRK00050 16S rRNA m(4)C1402 me 98.4 9.7E-07 2.1E-11 79.3 8.1 95 155-254 8-109 (296)
218 COG0742 N6-adenine-specific me 98.4 6.8E-06 1.5E-10 68.3 12.3 126 149-277 24-157 (187)
219 PRK00536 speE spermidine synth 98.4 3.6E-06 7.7E-11 74.4 10.9 99 166-274 72-171 (262)
220 TIGR03439 methyl_EasF probable 98.4 1.5E-05 3.2E-10 72.7 14.7 106 166-274 76-197 (319)
221 COG2265 TrmA SAM-dependent met 98.3 9.5E-06 2.1E-10 77.0 13.5 109 152-274 279-396 (432)
222 PF09445 Methyltransf_15: RNA 98.3 9.2E-07 2E-11 72.3 5.7 72 169-244 2-76 (163)
223 COG4627 Uncharacterized protei 98.3 1E-07 2.3E-12 75.4 -0.0 59 220-278 30-90 (185)
224 PF01269 Fibrillarin: Fibrilla 98.3 5.2E-05 1.1E-09 64.5 16.1 149 163-331 70-226 (229)
225 PF08123 DOT1: Histone methyla 98.2 4.4E-06 9.6E-11 71.3 8.1 118 155-274 31-158 (205)
226 KOG3201 Uncharacterized conser 98.2 1.6E-06 3.5E-11 69.3 5.0 130 149-278 12-144 (201)
227 TIGR02987 met_A_Alw26 type II 98.2 1.4E-05 3E-10 78.5 12.6 95 147-244 5-119 (524)
228 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.9E-05 4.2E-10 79.9 14.0 127 149-277 172-350 (702)
229 COG4076 Predicted RNA methylas 98.2 4.8E-06 1E-10 68.3 7.2 100 166-272 32-133 (252)
230 COG3897 Predicted methyltransf 98.2 7.2E-06 1.6E-10 67.9 8.3 115 156-278 69-183 (218)
231 PF03059 NAS: Nicotianamine sy 98.2 3.2E-05 6.9E-10 68.7 13.0 107 167-275 121-231 (276)
232 TIGR00308 TRM1 tRNA(guanine-26 98.2 1.7E-05 3.7E-10 73.9 11.5 100 168-274 46-147 (374)
233 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 1.3E-05 2.7E-10 72.3 10.3 121 154-277 73-222 (283)
234 COG4798 Predicted methyltransf 98.2 1.8E-05 4E-10 65.3 9.9 147 161-319 43-203 (238)
235 KOG2352 Predicted spermine/spe 98.2 3E-05 6.4E-10 73.0 12.4 103 169-276 51-163 (482)
236 COG0116 Predicted N6-adenine-s 98.2 4.4E-05 9.6E-10 70.2 13.3 138 134-275 161-345 (381)
237 PF00398 RrnaAD: Ribosomal RNA 98.1 1.9E-05 4.1E-10 70.5 10.3 106 151-266 15-123 (262)
238 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1.1E-05 2.3E-10 75.1 8.7 74 152-231 183-256 (352)
239 PF13679 Methyltransf_32: Meth 98.1 4.4E-05 9.6E-10 61.4 11.3 104 165-275 24-132 (141)
240 KOG1709 Guanidinoacetate methy 98.1 2E-05 4.3E-10 66.2 9.1 113 156-274 92-206 (271)
241 KOG2798 Putative trehalase [Ca 98.1 4.5E-05 9.7E-10 67.6 11.6 159 154-320 134-336 (369)
242 PF01728 FtsJ: FtsJ-like methy 98.1 1.9E-06 4E-11 72.5 2.5 97 166-276 23-141 (181)
243 KOG3115 Methyltransferase-like 98.1 1.5E-05 3.2E-10 66.3 7.6 108 167-277 61-186 (249)
244 COG0293 FtsJ 23S rRNA methylas 98.1 4.2E-05 9E-10 64.6 10.1 100 165-278 44-163 (205)
245 COG2384 Predicted SAM-dependen 98.0 0.0003 6.5E-09 59.7 15.1 136 154-319 6-141 (226)
246 COG1889 NOP1 Fibrillarin-like 98.0 0.00055 1.2E-08 57.2 15.5 146 163-331 73-228 (231)
247 PRK11760 putative 23S rRNA C24 98.0 7.4E-05 1.6E-09 67.8 11.0 87 165-267 210-296 (357)
248 PRK11827 hypothetical protein; 98.0 3.9E-06 8.4E-11 55.9 2.0 44 58-110 6-49 (60)
249 TIGR01444 fkbM_fam methyltrans 97.9 4.2E-05 9E-10 61.5 7.8 59 169-230 1-59 (143)
250 COG4262 Predicted spermidine s 97.9 0.0002 4.4E-09 64.8 12.5 142 167-331 290-450 (508)
251 KOG2730 Methylase [General fun 97.9 1.7E-05 3.6E-10 66.8 5.3 91 151-245 78-173 (263)
252 COG2835 Uncharacterized conser 97.9 8E-06 1.7E-10 53.8 2.2 45 57-110 5-49 (60)
253 TIGR00006 S-adenosyl-methyltra 97.8 0.00021 4.5E-09 64.5 9.9 87 154-244 8-99 (305)
254 COG1189 Predicted rRNA methyla 97.6 0.001 2.2E-08 57.2 11.9 139 164-320 77-223 (245)
255 PF13578 Methyltransf_24: Meth 97.6 1.4E-05 3.1E-10 60.8 0.6 100 171-274 1-105 (106)
256 KOG2187 tRNA uracil-5-methyltr 97.6 7E-05 1.5E-09 70.7 5.1 76 151-231 368-443 (534)
257 KOG1122 tRNA and rRNA cytosine 97.5 0.00079 1.7E-08 62.2 10.4 113 162-278 237-375 (460)
258 PF05971 Methyltransf_10: Prot 97.5 0.00067 1.4E-08 61.0 8.8 95 154-250 85-190 (299)
259 PF06962 rRNA_methylase: Putat 97.4 0.00095 2.1E-08 53.0 8.1 85 192-278 1-96 (140)
260 KOG4589 Cell division protein 97.4 0.0013 2.9E-08 54.2 8.9 100 165-278 68-188 (232)
261 PF03966 Trm112p: Trm112p-like 97.4 0.0001 2.2E-09 51.3 2.0 46 57-102 4-68 (68)
262 PF03141 Methyltransf_29: Puta 97.4 0.00081 1.8E-08 63.8 8.4 117 168-321 367-491 (506)
263 PF04989 CmcI: Cephalosporin h 97.3 0.0008 1.7E-08 57.0 6.7 114 158-276 24-149 (206)
264 PF07091 FmrO: Ribosomal RNA m 97.3 0.0008 1.7E-08 58.5 6.6 136 167-320 106-243 (251)
265 COG5459 Predicted rRNA methyla 97.2 0.00076 1.6E-08 60.9 6.4 112 163-278 110-229 (484)
266 KOG4058 Uncharacterized conser 97.2 0.0025 5.4E-08 50.5 8.3 119 149-275 55-173 (199)
267 PRK10742 putative methyltransf 97.2 0.003 6.5E-08 55.1 9.2 92 156-249 76-176 (250)
268 PF01861 DUF43: Protein of unk 97.0 0.072 1.6E-06 46.3 16.1 133 165-321 43-178 (243)
269 PF01795 Methyltransf_5: MraW 97.0 0.0016 3.5E-08 58.8 6.3 84 156-243 10-99 (310)
270 PLN02668 indole-3-acetate carb 97.0 0.013 2.7E-07 54.8 12.0 148 167-314 64-301 (386)
271 COG1064 AdhP Zn-dependent alco 96.9 0.012 2.6E-07 53.9 11.5 97 163-276 163-261 (339)
272 COG0286 HsdM Type I restrictio 96.8 0.024 5.2E-07 55.1 13.4 147 129-277 144-329 (489)
273 KOG2793 Putative N2,N2-dimethy 96.8 0.015 3.2E-07 50.9 10.5 110 167-278 87-203 (248)
274 PF03269 DUF268: Caenorhabditi 96.8 0.0012 2.6E-08 53.2 3.4 101 167-278 2-115 (177)
275 COG0275 Predicted S-adenosylme 96.8 0.011 2.4E-07 52.7 9.7 86 154-243 11-102 (314)
276 PF03492 Methyltransf_7: SAM d 96.7 0.024 5.1E-07 52.4 11.7 149 166-314 16-245 (334)
277 KOG2198 tRNA cytosine-5-methyl 96.7 0.025 5.4E-07 51.9 11.1 115 161-278 150-300 (375)
278 PF13719 zinc_ribbon_5: zinc-r 96.6 0.001 2.2E-08 40.1 1.4 36 59-98 1-36 (37)
279 TIGR00027 mthyl_TIGR00027 meth 96.6 0.1 2.2E-06 46.4 14.3 160 156-319 72-248 (260)
280 PRK09424 pntA NAD(P) transhydr 96.3 0.042 9.1E-07 53.4 11.3 101 164-275 162-286 (509)
281 COG1063 Tdh Threonine dehydrog 96.3 0.081 1.8E-06 49.3 12.9 99 165-278 167-273 (350)
282 COG1568 Predicted methyltransf 96.2 0.02 4.3E-07 50.4 7.3 99 165-275 151-261 (354)
283 KOG0024 Sorbitol dehydrogenase 96.1 0.085 1.8E-06 47.6 11.1 103 163-278 166-277 (354)
284 PF04445 SAM_MT: Putative SAM- 96.1 0.028 6E-07 48.8 7.7 91 157-249 64-163 (234)
285 KOG1596 Fibrillarin and relate 96.1 0.026 5.6E-07 48.6 7.3 105 162-276 152-263 (317)
286 cd08283 FDH_like_1 Glutathione 96.0 0.11 2.3E-06 49.1 12.0 105 162-275 180-307 (386)
287 PF07757 AdoMet_MTase: Predict 96.0 0.0086 1.9E-07 44.9 3.6 32 166-199 58-89 (112)
288 PF02005 TRM: N2,N2-dimethylgu 95.9 0.035 7.5E-07 52.1 8.2 104 167-276 50-156 (377)
289 PF13717 zinc_ribbon_4: zinc-r 95.9 0.0045 9.8E-08 37.0 1.5 35 59-97 1-35 (36)
290 COG4301 Uncharacterized conser 95.8 0.64 1.4E-05 40.5 14.5 110 164-275 76-194 (321)
291 PF14803 Nudix_N_2: Nudix N-te 95.8 0.0057 1.2E-07 35.9 1.5 30 63-97 3-32 (34)
292 PRK01747 mnmC bifunctional tRN 95.7 0.063 1.4E-06 54.4 10.0 126 166-318 57-224 (662)
293 KOG1099 SAM-dependent methyltr 95.7 0.019 4E-07 49.1 5.0 95 167-275 42-164 (294)
294 COG3510 CmcI Cephalosporin hyd 95.7 0.077 1.7E-06 44.2 8.4 112 159-278 62-184 (237)
295 KOG0822 Protein kinase inhibit 95.7 0.1 2.2E-06 50.1 10.2 106 167-276 368-480 (649)
296 COG3129 Predicted SAM-dependen 95.7 0.047 1E-06 46.8 7.2 99 148-250 54-166 (292)
297 COG1198 PriA Primosomal protei 95.5 0.24 5.3E-06 50.1 12.9 108 168-278 484-604 (730)
298 PRK00420 hypothetical protein; 95.5 0.0084 1.8E-07 45.6 2.0 32 60-101 23-54 (112)
299 PF02636 Methyltransf_28: Puta 95.4 0.051 1.1E-06 48.1 7.1 46 167-212 19-72 (252)
300 KOG1501 Arginine N-methyltrans 95.4 0.038 8.3E-07 51.6 6.0 61 168-231 68-128 (636)
301 TIGR00595 priA primosomal prot 95.3 0.57 1.2E-05 45.9 14.6 32 168-199 262-293 (505)
302 PF10571 UPF0547: Uncharacteri 95.3 0.009 2E-07 32.8 1.2 24 62-98 2-25 (26)
303 PRK11524 putative methyltransf 95.3 0.076 1.7E-06 47.9 7.9 60 150-212 193-252 (284)
304 PHA00626 hypothetical protein 95.2 0.013 2.9E-07 37.9 1.9 33 61-98 1-34 (59)
305 PRK09880 L-idonate 5-dehydroge 95.2 0.13 2.9E-06 47.5 9.5 100 164-275 167-267 (343)
306 KOG1562 Spermidine synthase [A 95.2 0.065 1.4E-06 47.7 6.7 105 166-275 121-237 (337)
307 PF01555 N6_N4_Mtase: DNA meth 95.2 0.083 1.8E-06 45.5 7.5 57 149-208 175-231 (231)
308 TIGR02098 MJ0042_CXXC MJ0042 f 95.2 0.01 2.2E-07 36.0 1.2 36 59-98 1-36 (38)
309 TIGR00561 pntA NAD(P) transhyd 95.0 0.1 2.2E-06 50.8 8.3 97 165-272 162-282 (511)
310 PRK09678 DNA-binding transcrip 95.0 0.017 3.6E-07 40.3 2.1 49 60-109 1-51 (72)
311 PRK05580 primosome assembly pr 95.0 0.54 1.2E-05 47.8 13.7 103 168-278 430-550 (679)
312 PRK13699 putative methylase; P 95.0 0.16 3.5E-06 44.2 8.7 61 149-212 147-207 (227)
313 TIGR01206 lysW lysine biosynth 95.0 0.038 8.2E-07 36.2 3.5 32 60-98 2-33 (54)
314 KOG1088 Uncharacterized conser 94.9 0.012 2.6E-07 44.3 1.2 28 82-109 93-120 (124)
315 PF11599 AviRa: RRNA methyltra 94.9 0.069 1.5E-06 45.4 5.8 119 156-274 41-214 (246)
316 PF08271 TF_Zn_Ribbon: TFIIB z 94.9 0.017 3.8E-07 36.0 1.7 29 61-97 1-29 (43)
317 COG1867 TRM1 N2,N2-dimethylgua 94.9 0.22 4.8E-06 45.8 9.5 102 167-275 53-155 (380)
318 PF10354 DUF2431: Domain of un 94.8 0.54 1.2E-05 38.8 11.0 126 172-322 2-153 (166)
319 PF08274 PhnA_Zn_Ribbon: PhnA 94.8 0.017 3.7E-07 32.8 1.3 27 61-97 3-29 (30)
320 COG1997 RPL43A Ribosomal prote 94.8 0.019 4.1E-07 41.0 1.8 32 59-99 34-65 (89)
321 PHA01634 hypothetical protein 94.7 0.096 2.1E-06 40.6 5.7 47 166-213 28-74 (156)
322 KOG2352 Predicted spermine/spe 94.6 0.042 9.2E-07 52.2 4.2 118 167-288 296-430 (482)
323 PF00107 ADH_zinc_N: Zinc-bind 94.5 0.2 4.4E-06 39.0 7.5 118 176-310 1-126 (130)
324 cd00315 Cyt_C5_DNA_methylase C 94.4 0.13 2.8E-06 46.2 7.0 125 169-319 2-141 (275)
325 PRK14873 primosome assembly pr 94.4 0.52 1.1E-05 47.7 11.7 96 167-274 430-536 (665)
326 cd08237 ribitol-5-phosphate_DH 94.4 0.75 1.6E-05 42.5 12.2 95 164-275 161-257 (341)
327 PRK00398 rpoP DNA-directed RNA 94.3 0.041 8.8E-07 34.9 2.5 30 59-97 2-31 (46)
328 COG0686 Ald Alanine dehydrogen 94.3 0.17 3.8E-06 45.4 7.1 101 166-274 167-268 (371)
329 TIGR01202 bchC 2-desacetyl-2-h 94.3 0.63 1.4E-05 42.3 11.2 88 166-275 144-232 (308)
330 cd05188 MDR Medium chain reduc 94.2 1.3 2.8E-05 38.7 12.9 96 165-276 133-234 (271)
331 PF05430 Methyltransf_30: S-ad 94.1 0.071 1.5E-06 41.7 3.9 87 220-333 32-124 (124)
332 KOG2920 Predicted methyltransf 94.1 0.06 1.3E-06 47.7 3.9 107 165-274 115-234 (282)
333 KOG2539 Mitochondrial/chloropl 94.0 0.11 2.3E-06 49.2 5.5 111 165-278 199-319 (491)
334 PF03514 GRAS: GRAS domain fam 94.0 2.2 4.9E-05 40.1 14.4 118 156-273 100-243 (374)
335 PRK13699 putative methylase; P 93.9 0.18 3.9E-06 43.9 6.5 74 222-318 3-93 (227)
336 PF11781 RRN7: RNA polymerase 93.8 0.036 7.8E-07 33.1 1.3 28 59-96 7-34 (36)
337 PRK00432 30S ribosomal protein 93.7 0.044 9.5E-07 35.4 1.8 33 56-98 16-48 (50)
338 PF06859 Bin3: Bicoid-interact 93.7 0.03 6.5E-07 42.3 1.1 80 237-319 1-90 (110)
339 PF08792 A2L_zn_ribbon: A2L zi 93.6 0.055 1.2E-06 31.6 1.9 30 59-98 2-32 (33)
340 KOG2671 Putative RNA methylase 93.5 0.09 2E-06 47.8 4.0 123 152-277 193-357 (421)
341 COG1645 Uncharacterized Zn-fin 93.5 0.041 9E-07 42.8 1.6 29 58-97 26-54 (131)
342 PF01096 TFIIS_C: Transcriptio 93.4 0.036 7.8E-07 33.7 1.0 37 61-97 1-38 (39)
343 cd08254 hydroxyacyl_CoA_DH 6-h 93.3 1.2 2.6E-05 40.6 11.4 95 164-275 163-264 (338)
344 PRK10220 hypothetical protein; 93.3 0.069 1.5E-06 39.9 2.4 33 59-101 2-34 (111)
345 KOG2651 rRNA adenine N-6-methy 93.2 0.31 6.7E-06 45.0 6.9 43 165-208 152-194 (476)
346 COG1656 Uncharacterized conser 93.2 0.039 8.5E-07 44.6 1.1 45 56-100 93-143 (165)
347 PTZ00357 methyltransferase; Pr 93.1 0.71 1.5E-05 46.0 9.6 100 169-269 703-830 (1072)
348 PRK00464 nrdR transcriptional 93.1 0.056 1.2E-06 43.8 1.8 41 61-101 1-42 (154)
349 PF11312 DUF3115: Protein of u 92.8 0.23 5E-06 44.8 5.5 110 168-277 88-245 (315)
350 KOG1227 Putative methyltransfe 92.8 0.098 2.1E-06 46.6 3.0 102 167-276 195-299 (351)
351 TIGR03366 HpnZ_proposed putati 92.7 3.3 7.1E-05 37.0 13.1 97 164-275 118-219 (280)
352 TIGR02822 adh_fam_2 zinc-bindi 92.7 1.8 4E-05 39.7 11.6 94 162-275 161-255 (329)
353 PF09862 DUF2089: Protein of u 92.6 0.062 1.4E-06 40.9 1.4 22 63-97 1-22 (113)
354 COG4306 Uncharacterized protei 92.5 0.04 8.6E-07 42.1 0.2 45 57-101 36-82 (160)
355 COG1565 Uncharacterized conser 92.5 0.62 1.3E-05 42.9 7.8 48 166-213 77-132 (370)
356 TIGR00686 phnA alkylphosphonat 92.5 0.092 2E-06 39.2 2.1 32 60-101 2-33 (109)
357 PF09297 zf-NADH-PPase: NADH p 92.3 0.11 2.3E-06 30.1 1.9 27 62-97 5-31 (32)
358 smart00440 ZnF_C2C2 C2C2 Zinc 92.2 0.087 1.9E-06 32.3 1.5 38 61-98 1-39 (40)
359 KOG1253 tRNA methyltransferase 92.2 0.17 3.7E-06 48.2 4.0 106 165-276 108-218 (525)
360 PF05711 TylF: Macrocin-O-meth 92.1 0.31 6.7E-06 42.9 5.3 114 160-276 68-214 (248)
361 cd08230 glucose_DH Glucose deh 92.1 1.3 2.8E-05 41.0 10.0 94 165-275 171-270 (355)
362 PF14446 Prok-RING_1: Prokaryo 91.9 0.1 2.3E-06 33.9 1.6 26 61-97 6-31 (54)
363 cd08239 THR_DH_like L-threonin 91.9 4.4 9.5E-05 37.1 13.1 98 162-275 159-263 (339)
364 TIGR03451 mycoS_dep_FDH mycoth 91.8 2.5 5.3E-05 39.3 11.5 98 163-275 173-277 (358)
365 COG3315 O-Methyltransferase in 91.6 3.6 7.9E-05 37.3 11.9 160 156-319 83-262 (297)
366 cd08281 liver_ADH_like1 Zinc-d 91.6 2.2 4.8E-05 39.9 11.0 98 163-275 188-291 (371)
367 PF09538 FYDLN_acid: Protein o 91.6 0.11 2.5E-06 39.3 1.8 30 61-100 10-39 (108)
368 smart00659 RPOLCX RNA polymera 91.6 0.17 3.6E-06 31.7 2.2 28 60-97 2-29 (44)
369 PF04606 Ogr_Delta: Ogr/Delta- 91.5 0.089 1.9E-06 33.5 1.0 38 62-100 1-40 (47)
370 PF01780 Ribosomal_L37ae: Ribo 91.5 0.077 1.7E-06 38.5 0.7 31 59-98 34-64 (90)
371 PF14353 CpXC: CpXC protein 91.5 0.1 2.3E-06 41.0 1.5 41 61-101 2-52 (128)
372 smart00661 RPOL9 RNA polymeras 91.0 0.21 4.6E-06 32.3 2.4 34 62-102 2-35 (52)
373 PF05206 TRM13: Methyltransfer 90.8 0.95 2.1E-05 40.2 7.1 66 164-232 16-86 (259)
374 COG2888 Predicted Zn-ribbon RN 90.8 0.12 2.6E-06 34.1 1.1 35 58-96 25-59 (61)
375 PRK10458 DNA cytosine methylas 90.7 5.2 0.00011 38.7 12.6 73 153-231 68-146 (467)
376 PF07191 zinc-ribbons_6: zinc- 90.7 0.15 3.3E-06 35.1 1.6 26 61-97 2-27 (70)
377 PLN02586 probable cinnamyl alc 90.6 4 8.6E-05 38.0 11.6 95 165-274 182-278 (360)
378 PF13248 zf-ribbon_3: zinc-rib 90.6 0.13 2.8E-06 28.2 1.0 24 60-96 2-25 (26)
379 TIGR00497 hsdM type I restrict 90.6 4.5 9.8E-05 39.6 12.3 129 147-276 196-357 (501)
380 PF13240 zinc_ribbon_2: zinc-r 90.6 0.12 2.7E-06 27.4 0.8 22 62-96 1-22 (23)
381 PF02150 RNA_POL_M_15KD: RNA p 90.4 0.14 3E-06 30.3 1.0 31 62-100 3-33 (35)
382 PF06677 Auto_anti-p27: Sjogre 90.2 0.22 4.7E-06 30.6 1.7 25 60-94 17-41 (41)
383 COG1779 C4-type Zn-finger prot 90.2 0.16 3.5E-06 42.4 1.6 42 58-99 12-55 (201)
384 cd00401 AdoHcyase S-adenosyl-L 90.1 2.6 5.6E-05 40.1 9.8 99 155-275 189-290 (413)
385 TIGR03655 anti_R_Lar restricti 90.0 0.24 5.2E-06 32.4 2.0 38 60-99 1-38 (53)
386 COG0270 Dcm Site-specific DNA 89.7 4.4 9.5E-05 37.4 10.9 123 168-316 4-142 (328)
387 COG1326 Uncharacterized archae 89.6 0.2 4.3E-06 41.6 1.7 35 60-99 6-42 (201)
388 PLN02740 Alcohol dehydrogenase 89.6 4.8 0.0001 37.8 11.4 99 162-275 194-301 (381)
389 COG3809 Uncharacterized protei 89.4 0.21 4.5E-06 34.9 1.4 36 60-102 1-36 (88)
390 PF01927 Mut7-C: Mut7-C RNAse 89.4 0.28 6.1E-06 39.6 2.4 45 57-101 88-138 (147)
391 PF03604 DNA_RNApol_7kD: DNA d 89.3 0.32 6.9E-06 28.1 1.9 27 61-97 1-27 (32)
392 COG4888 Uncharacterized Zn rib 89.3 0.21 4.6E-06 36.7 1.4 37 56-98 18-57 (104)
393 PF00145 DNA_methylase: C-5 cy 89.3 4.2 9E-05 37.0 10.5 123 169-319 2-140 (335)
394 cd08232 idonate-5-DH L-idonate 89.3 5.9 0.00013 36.2 11.5 95 165-274 164-262 (339)
395 PF14205 Cys_rich_KTR: Cystein 89.1 0.26 5.6E-06 31.9 1.5 37 59-98 3-39 (55)
396 TIGR02300 FYDLN_acid conserved 89.0 0.25 5.5E-06 38.1 1.8 30 61-100 10-39 (129)
397 PF07279 DUF1442: Protein of u 88.8 9.4 0.0002 32.7 11.2 112 156-275 31-149 (218)
398 PF03119 DNA_ligase_ZBD: NAD-d 88.8 0.32 6.9E-06 27.2 1.6 22 62-92 1-22 (28)
399 COG3877 Uncharacterized protei 88.8 0.24 5.3E-06 36.7 1.5 27 58-97 4-30 (122)
400 PLN03154 putative allyl alcoho 88.7 7.3 0.00016 36.0 11.7 97 162-274 154-258 (348)
401 PTZ00255 60S ribosomal protein 88.7 0.22 4.8E-06 36.2 1.2 31 59-98 35-65 (90)
402 COG1571 Predicted DNA-binding 88.7 0.24 5.3E-06 46.4 1.8 32 60-101 350-381 (421)
403 TIGR00280 L37a ribosomal prote 88.4 0.22 4.7E-06 36.3 1.0 31 59-98 34-64 (91)
404 PF02153 PDH: Prephenate dehyd 88.2 1.4 3.1E-05 39.1 6.3 77 180-272 1-77 (258)
405 KOG2782 Putative SAM dependent 88.2 0.27 5.8E-06 41.9 1.5 90 154-246 31-127 (303)
406 cd05213 NAD_bind_Glutamyl_tRNA 88.2 3.8 8.2E-05 37.5 9.3 132 158-312 169-303 (311)
407 PF01488 Shikimate_DH: Shikima 88.1 2.7 5.9E-05 33.2 7.3 80 162-250 7-88 (135)
408 PF13453 zf-TFIIB: Transcripti 88.1 0.16 3.5E-06 31.2 0.1 33 62-101 1-33 (41)
409 PF14354 Lar_restr_allev: Rest 87.8 0.42 9.1E-06 32.1 2.1 35 59-95 2-37 (61)
410 TIGR00518 alaDH alanine dehydr 87.8 1.3 2.8E-05 41.6 6.0 101 166-274 166-267 (370)
411 COG0287 TyrA Prephenate dehydr 87.6 2.8 6E-05 37.7 7.8 89 168-271 4-95 (279)
412 PRK03976 rpl37ae 50S ribosomal 87.5 0.25 5.4E-06 35.9 0.8 31 59-98 35-65 (90)
413 TIGR02825 B4_12hDH leukotriene 87.4 13 0.00028 33.8 12.5 97 161-274 133-237 (325)
414 PRK05786 fabG 3-ketoacyl-(acyl 87.4 13 0.00027 31.9 11.8 103 167-276 5-137 (238)
415 PF11899 DUF3419: Protein of u 87.3 1 2.2E-05 42.4 5.0 63 218-280 274-340 (380)
416 PRK11524 putative methyltransf 87.1 0.53 1.2E-05 42.4 3.0 55 220-274 8-80 (284)
417 PLN00203 glutamyl-tRNA reducta 87.1 4.6 9.9E-05 39.7 9.5 116 155-279 252-372 (519)
418 PF07754 DUF1610: Domain of un 87.0 0.54 1.2E-05 25.2 1.7 24 63-95 1-24 (24)
419 PF09986 DUF2225: Uncharacteri 86.9 0.51 1.1E-05 40.7 2.6 41 60-100 5-61 (214)
420 PRK10309 galactitol-1-phosphat 86.8 8.8 0.00019 35.3 11.0 97 164-275 158-261 (347)
421 cd08294 leukotriene_B4_DH_like 86.7 11 0.00024 34.1 11.6 97 161-274 138-241 (329)
422 KOG3507 DNA-directed RNA polym 86.7 0.38 8.2E-06 31.6 1.2 31 57-97 17-47 (62)
423 PRK14890 putative Zn-ribbon RN 86.7 0.39 8.5E-06 31.8 1.3 34 58-95 23-56 (59)
424 COG1327 Predicted transcriptio 86.6 0.36 7.8E-06 38.5 1.3 43 61-103 1-44 (156)
425 PLN02178 cinnamyl-alcohol dehy 86.5 6.1 0.00013 37.1 9.9 94 165-275 177-274 (375)
426 PF05129 Elf1: Transcription e 86.5 0.21 4.5E-06 35.8 0.0 41 57-100 19-59 (81)
427 cd08245 CAD Cinnamyl alcohol d 86.2 12 0.00026 33.9 11.6 97 162-274 158-256 (330)
428 PRK14892 putative transcriptio 86.2 0.63 1.4E-05 34.7 2.4 35 58-98 19-53 (99)
429 COG1062 AdhC Zn-dependent alco 86.2 9.2 0.0002 35.2 10.2 103 159-276 178-287 (366)
430 COG1998 RPS31 Ribosomal protei 86.1 0.54 1.2E-05 29.8 1.7 30 58-97 17-47 (51)
431 COG1255 Uncharacterized protei 86.0 4.2 9.2E-05 31.1 6.7 89 167-277 14-105 (129)
432 PLN02827 Alcohol dehydrogenase 86.0 9.5 0.0002 35.8 10.9 97 163-274 190-295 (378)
433 PRK06035 3-hydroxyacyl-CoA deh 86.0 11 0.00024 33.9 11.0 96 168-271 4-118 (291)
434 TIGR02819 fdhA_non_GSH formald 85.8 15 0.00032 34.8 12.1 103 164-276 183-301 (393)
435 smart00531 TFIIE Transcription 85.6 0.36 7.9E-06 38.9 1.0 41 54-97 93-133 (147)
436 PLN02514 cinnamyl-alcohol dehy 85.6 15 0.00031 34.2 11.9 96 165-275 179-276 (357)
437 PF02254 TrkA_N: TrkA-N domain 85.6 13 0.00029 27.9 10.2 86 175-275 4-97 (116)
438 KOG3924 Putative protein methy 85.4 2.1 4.5E-05 39.9 5.8 122 155-278 181-312 (419)
439 TIGR00244 transcriptional regu 85.3 0.51 1.1E-05 37.6 1.6 43 61-103 1-44 (147)
440 PF11253 DUF3052: Protein of u 85.3 8.9 0.00019 29.8 8.3 69 235-321 43-111 (127)
441 PF03811 Zn_Tnp_IS1: InsA N-te 85.2 0.84 1.8E-05 27.2 2.1 31 60-94 5-36 (36)
442 COG2933 Predicted SAM-dependen 85.1 4.4 9.6E-05 35.8 7.3 87 165-267 210-296 (358)
443 cd08285 NADP_ADH NADP(H)-depen 85.0 11 0.00024 34.6 10.8 97 163-274 163-266 (351)
444 TIGR03201 dearomat_had 6-hydro 84.8 19 0.00041 33.2 12.2 100 163-275 163-273 (349)
445 PHA02998 RNA polymerase subuni 84.5 0.58 1.3E-05 38.3 1.6 42 59-100 142-184 (195)
446 COG0373 HemA Glutamyl-tRNA red 84.2 11 0.00023 35.9 10.1 137 153-310 164-302 (414)
447 cd08234 threonine_DH_like L-th 84.1 12 0.00027 33.9 10.7 98 162-275 155-258 (334)
448 TIGR02818 adh_III_F_hyde S-(hy 84.1 18 0.00039 33.7 11.8 99 162-275 181-288 (368)
449 COG3677 Transposase and inacti 84.0 0.64 1.4E-05 36.6 1.7 42 58-103 28-69 (129)
450 PF14740 DUF4471: Domain of un 83.9 2.6 5.7E-05 37.9 5.7 67 235-318 220-286 (289)
451 cd05285 sorbitol_DH Sorbitol d 83.7 20 0.00044 32.8 11.9 98 161-274 157-265 (343)
452 smart00834 CxxC_CXXC_SSSS Puta 83.6 0.65 1.4E-05 28.2 1.3 30 60-95 5-34 (41)
453 cd08233 butanediol_DH_like (2R 83.5 33 0.00072 31.5 13.3 103 162-276 168-274 (351)
454 PF10237 N6-adenineMlase: Prob 83.5 17 0.00036 29.9 9.8 106 152-275 9-124 (162)
455 smart00778 Prim_Zn_Ribbon Zinc 83.4 1.2 2.7E-05 26.6 2.3 30 61-95 4-33 (37)
456 cd05278 FDH_like Formaldehyde 83.4 13 0.00028 34.0 10.5 96 164-274 165-267 (347)
457 PF07282 OrfB_Zn_ribbon: Putat 83.3 0.73 1.6E-05 31.8 1.6 29 60-97 28-56 (69)
458 TIGR00936 ahcY adenosylhomocys 83.2 10 0.00022 36.1 9.6 89 165-275 193-283 (406)
459 cd08231 MDR_TM0436_like Hypoth 83.0 25 0.00055 32.4 12.3 94 166-274 177-280 (361)
460 cd08255 2-desacetyl-2-hydroxye 82.9 16 0.00036 32.1 10.6 96 162-274 93-190 (277)
461 PHA02768 hypothetical protein; 82.9 0.28 6.1E-06 32.2 -0.6 45 60-105 5-49 (55)
462 COG1096 Predicted RNA-binding 82.9 0.72 1.6E-05 38.2 1.6 26 61-97 150-175 (188)
463 cd08300 alcohol_DH_class_III c 82.8 20 0.00043 33.3 11.6 99 162-275 182-289 (368)
464 PF10083 DUF2321: Uncharacteri 82.7 0.49 1.1E-05 37.9 0.5 47 59-105 38-86 (158)
465 COG1086 Predicted nucleoside-d 82.5 11 0.00025 37.0 9.7 82 166-251 249-339 (588)
466 PF12760 Zn_Tnp_IS1595: Transp 82.5 1.1 2.5E-05 28.2 2.1 29 59-95 17-45 (46)
467 TIGR03831 YgiT_finger YgiT-typ 82.5 0.77 1.7E-05 28.6 1.3 14 87-100 32-45 (46)
468 KOG2691 RNA polymerase II subu 82.5 1.1 2.3E-05 33.5 2.2 40 59-98 72-112 (113)
469 PF12692 Methyltransf_17: S-ad 82.4 4.4 9.5E-05 32.5 5.7 42 156-198 19-60 (160)
470 PRK08339 short chain dehydroge 82.3 29 0.00062 30.5 11.9 77 166-247 7-95 (263)
471 cd08261 Zn_ADH7 Alcohol dehydr 81.8 20 0.00043 32.7 11.0 99 163-274 156-258 (337)
472 COG1996 RPC10 DNA-directed RNA 81.6 0.9 1.9E-05 29.0 1.3 32 57-97 3-34 (49)
473 cd08277 liver_alcohol_DH_like 81.6 22 0.00049 32.9 11.4 98 163-275 181-287 (365)
474 PF04072 LCM: Leucine carboxyl 81.5 4 8.6E-05 34.1 5.7 95 156-251 67-171 (183)
475 TIGR00675 dcm DNA-methyltransf 81.4 3.2 7E-05 38.0 5.5 123 170-318 1-137 (315)
476 KOG2906 RNA polymerase III sub 81.4 0.88 1.9E-05 33.3 1.4 35 60-101 1-35 (105)
477 cd08295 double_bond_reductase_ 81.3 19 0.00041 32.9 10.7 100 162-274 147-251 (338)
478 cd08301 alcohol_DH_plants Plan 81.3 19 0.00041 33.5 10.8 99 162-275 183-290 (369)
479 PF08273 Prim_Zn_Ribbon: Zinc- 81.3 0.79 1.7E-05 28.0 1.0 31 61-95 4-34 (40)
480 KOG0821 Predicted ribosomal RN 81.2 6 0.00013 34.0 6.5 73 154-231 38-110 (326)
481 cd08242 MDR_like Medium chain 81.2 25 0.00053 31.7 11.3 93 163-274 152-245 (319)
482 PRK05978 hypothetical protein; 81.1 1 2.3E-05 36.1 1.9 33 60-100 33-65 (148)
483 cd08298 CAD2 Cinnamyl alcohol 81.1 32 0.00069 31.1 12.1 93 162-274 163-256 (329)
484 PRK07066 3-hydroxybutyryl-CoA 80.8 8.2 0.00018 35.5 7.9 100 168-274 8-119 (321)
485 PRK08265 short chain dehydroge 80.7 18 0.0004 31.6 10.0 71 167-246 6-89 (261)
486 PRK07806 short chain dehydroge 80.7 31 0.00068 29.7 11.4 102 167-274 6-134 (248)
487 PRK08324 short chain dehydroge 80.6 19 0.00042 36.8 11.3 103 166-275 421-558 (681)
488 KOG2918 Carboxymethyl transfer 80.6 32 0.00069 31.3 11.1 49 158-206 78-129 (335)
489 PRK07502 cyclohexadienyl dehyd 80.1 9.3 0.0002 34.7 8.1 90 168-272 7-98 (307)
490 TIGR00373 conserved hypothetic 80.0 0.8 1.7E-05 37.4 0.9 35 54-96 103-137 (158)
491 TIGR01385 TFSII transcription 79.9 1.1 2.4E-05 40.5 1.9 42 56-97 254-296 (299)
492 PRK05854 short chain dehydroge 79.6 36 0.00078 30.9 11.8 78 166-247 13-103 (313)
493 PF05050 Methyltransf_21: Meth 79.5 4.4 9.6E-05 32.6 5.3 38 172-209 1-42 (167)
494 cd08293 PTGR2 Prostaglandin re 79.5 31 0.00068 31.4 11.6 91 168-274 156-254 (345)
495 PRK07417 arogenate dehydrogena 79.5 8.9 0.00019 34.3 7.7 84 169-270 2-87 (279)
496 TIGR00310 ZPR1_znf ZPR1 zinc f 79.5 0.79 1.7E-05 38.7 0.8 37 61-98 1-41 (192)
497 PF11899 DUF3419: Protein of u 79.4 7.2 0.00016 36.7 7.2 53 156-210 25-77 (380)
498 cd08236 sugar_DH NAD(P)-depend 79.4 37 0.0008 30.9 12.0 97 162-274 155-258 (343)
499 PRK06266 transcription initiat 79.3 0.9 2E-05 37.9 1.0 37 52-96 109-145 (178)
500 TIGR02437 FadB fatty oxidation 79.0 27 0.00058 36.0 11.7 101 168-276 314-430 (714)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.95 E-value=4e-27 Score=202.92 Aligned_cols=188 Identities=24% Similarity=0.340 Sum_probs=152.0
Q ss_pred CcchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 019957 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~ 207 (333)
|+.+|+..++.|++.. .+.+...++.+|||||||||.++..+++..+.++|+|+|+|+.|++.++
T Consensus 28 n~~~S~g~~~~Wr~~~---------------i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 28 NDLMSFGLHRLWRRAL---------------ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred cccccCcchHHHHHHH---------------HHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 7889999999999743 2334444789999999999999999999976789999999999999999
Q ss_pred HHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc--chh
Q 019957 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLT 285 (333)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~ 285 (333)
++....+ ..++.|+.+|++++||+|++||+|++.+.|++++|+.++|+|++|||||||++++.+...+.... ...
T Consensus 93 ~k~~~~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~ 169 (238)
T COG2226 93 EKLKKKG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAY 169 (238)
T ss_pred HHhhccC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHH
Confidence 9998876 34499999999999999999999999999999999999999999999999999999988752211 111
Q ss_pred hHHHHH-h------------------hhccCCCCCHHHHHHHHHhCCCcEEE--EEEeCeEEEEEEeCC
Q 019957 286 GRVLRE-R------------------ILQNYNYLTEEEIEDLCTSCGLTNYT--SKVQQSFIMFAAQKP 333 (333)
Q Consensus 286 ~~~~~~-~------------------~~~~~~~~t~~~l~~ll~~aGf~~v~--~~~~~~~~~~~a~kp 333 (333)
...+.. . ......+.+.+++..+++++||+.+. ....+...++.+.||
T Consensus 170 ~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 170 ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 111111 0 11334577899999999999999776 244556688888876
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.95 E-value=4.6e-28 Score=210.92 Aligned_cols=187 Identities=27% Similarity=0.445 Sum_probs=92.9
Q ss_pred CcchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHH
Q 019957 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQC 206 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a 206 (333)
|..++++.++.|++. +.+.+...++.+|||+|||||.++..+++. ++..+|+|+|+|+.|++.|
T Consensus 24 n~~ls~g~~~~wr~~---------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a 88 (233)
T PF01209_consen 24 NDLLSFGQDRRWRRK---------------LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA 88 (233)
T ss_dssp -------------SH---------------HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH
T ss_pred ccccCCcHHHHHHHH---------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH
Confidence 678889999999863 333455667889999999999999999886 5567999999999999999
Q ss_pred HHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCC------
Q 019957 207 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS------ 280 (333)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------ 280 (333)
+++....+ ..+++++++|++++|+++++||+|++.+.|++++|+.+.|+|++|+|||||++++.+...+..
T Consensus 89 ~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~ 165 (233)
T PF01209_consen 89 RKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRAL 165 (233)
T ss_dssp HHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHH
T ss_pred HHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhce
Confidence 99998876 459999999999999999999999999999999999999999999999999999999887522
Q ss_pred -------CcchhhHHHHHh-------hhccCCCCCHHHHHHHHHhCCCcEEEE--EEeCeEEEEEEeC
Q 019957 281 -------STSLTGRVLRER-------ILQNYNYLTEEEIEDLCTSCGLTNYTS--KVQQSFIMFAAQK 332 (333)
Q Consensus 281 -------~~~~~~~~~~~~-------~~~~~~~~t~~~l~~ll~~aGf~~v~~--~~~~~~~~~~a~k 332 (333)
..|+++..+... ......+.+.+++.++++++||+.++. ...+...+++|.|
T Consensus 166 ~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 166 YKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp HHH-----------------------------------------------------------------
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 112212111110 013345677899999999999997764 3455557777765
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.92 E-value=1.3e-23 Score=186.85 Aligned_cols=173 Identities=23% Similarity=0.302 Sum_probs=130.1
Q ss_pred HHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (333)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (333)
.+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++..........++.++++|++++|+++++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence 33455566789999999999999988876 45569999999999999998775421100145799999999999999999
Q ss_pred cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHHH------------------hhhccCC
Q 019957 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRE------------------RILQNYN 298 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~ 298 (333)
||+|++..+++|++|+..+++++.|+|||||.+++.++...... .+.+..++.. ......+
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764211 1111111100 0012245
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEEeC--eEEEEEEe
Q 019957 299 YLTEEEIEDLCTSCGLTNYTSKVQQ--SFIMFAAQ 331 (333)
Q Consensus 299 ~~t~~~l~~ll~~aGf~~v~~~~~~--~~~~~~a~ 331 (333)
+++.+++.++++++||+.++..... ...+++++
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 7899999999999999988754422 22555554
No 4
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.91 E-value=8.7e-24 Score=189.54 Aligned_cols=178 Identities=22% Similarity=0.418 Sum_probs=124.7
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecccCCCCcCCCCccccccccCcchhHHHHhhH
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW 139 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 139 (333)
+|+||+|+++|.... ..++|.++++.+..++||+++++.........- ...+++..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a----------- 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA----------- 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence 589999999995532 479999966555899999999974222111100 00111111
Q ss_pred HhhcccCCCCCc--HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcC
Q 019957 140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDN 214 (333)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~ 214 (333)
|+.|...+++.+ +...+.+.+.+. ....+|||+|||+|.++..+.+..+. .+++|+|+|+.+++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 233333333221 222233444433 34568999999999999999877542 3789999999999999875
Q ss_pred cCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957 215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
.+++.+..+|+.++|+++++||+|++...- ..++++.|+|||||.|++.++..
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 457889999999999999999999986541 23689999999999999988765
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.91 E-value=5.6e-23 Score=173.90 Aligned_cols=176 Identities=20% Similarity=0.272 Sum_probs=144.6
Q ss_pred CcchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC------CeEEEEeCCHH
Q 019957 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSEN 201 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~ 201 (333)
|+.++...++.|+.. ....+.+..+.++||++||||..+..+.+.-.. .+|+++|+|+.
T Consensus 77 ND~mSlGiHRlWKd~---------------~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~ 141 (296)
T KOG1540|consen 77 NDAMSLGIHRLWKDM---------------FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH 141 (296)
T ss_pred HHHhhcchhHHHHHH---------------hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence 788999999999754 444677778899999999999999988887543 78999999999
Q ss_pred HHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccC-C
Q 019957 202 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-S 280 (333)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~ 280 (333)
|+..++++..+.++.....+.++.+|++++||++.+||..++.+.|..++++.+.|+|++|+|||||+|.+.++.... .
T Consensus 142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~ 221 (296)
T KOG1540|consen 142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENE 221 (296)
T ss_pred HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccH
Confidence 999999998777763344599999999999999999999999999999999999999999999999999998877642 1
Q ss_pred ------------CcchhhHHHHHhhh-------ccCCCCCHHHHHHHHHhCCCcEEE
Q 019957 281 ------------STSLTGRVLRERIL-------QNYNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 281 ------------~~~~~~~~~~~~~~-------~~~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
..+.++.++..... ....+.+.+++..+.+++||..+.
T Consensus 222 ~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 222 PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 12222322222111 445678899999999999999886
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=1.5e-21 Score=180.03 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=123.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++....++ ..++.++.+|+.++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccCCCCCCCccEEEEC
Confidence 567899999999999999999875 45999999999999999998887764 567999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCC------CcchhhHHHHHhh---hccCCCCCHHHHHHHHHhCCCc
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS------STSLTGRVLRERI---LQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
.+++|++|+..+++++.++|||||.|++.++..... ..+. ........ .....+.+.+++..+++++||+
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPD-EQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHH-HHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 999999999999999999999999999988654211 0111 11111111 1122346899999999999999
Q ss_pred EEEEEE
Q 019957 316 NYTSKV 321 (333)
Q Consensus 316 ~v~~~~ 321 (333)
+++...
T Consensus 273 ~v~~~d 278 (340)
T PLN02244 273 DIKTED 278 (340)
T ss_pred eeEeee
Confidence 988643
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.89 E-value=2.2e-21 Score=170.01 Aligned_cols=174 Identities=25% Similarity=0.344 Sum_probs=135.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
+.+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++...+ ..++.++.+|+..++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCCC
Confidence 34555666667889999999999999999887 456799999999999999999887655 46899999999988888
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC-------------cchhhHHHH-------Hhhh
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-------------TSLTGRVLR-------ERIL 294 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~~~~~~~~~-------~~~~ 294 (333)
+++||+|++..+++|++++.++++++.++|+|||.+++.+....... .+.+...+. ....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE 191 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence 88999999999999999999999999999999999998876543110 011000000 0011
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeC
Q 019957 295 QNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 332 (333)
Q Consensus 295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~k 332 (333)
....+++.+++.++++++||++++... .+....+++.|
T Consensus 192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 192 STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 345678999999999999999877543 34557777766
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.88 E-value=3.2e-22 Score=181.64 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=120.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++....+. ..++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3567999999999999999988654 999999999999999987665432 357999999999998878899999999
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC--cchhhHHHHHh-hh--cc--CCCCCHHHHHHHHHhCCCcEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS--TSLTGRVLRER-IL--QN--YNYLTEEEIEDLCTSCGLTNY 317 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~-~~--~~--~~~~t~~~l~~ll~~aGf~~v 317 (333)
++|||+.|+..+++++.++|||||.+++.+++..... .......+... .+ .| ..+++++++..+++++||+++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999998764110 00001111111 11 12 347899999999999999988
Q ss_pred EE
Q 019957 318 TS 319 (333)
Q Consensus 318 ~~ 319 (333)
+.
T Consensus 286 ~~ 287 (322)
T PLN02396 286 EM 287 (322)
T ss_pred EE
Confidence 75
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.87 E-value=9.4e-21 Score=168.75 Aligned_cols=165 Identities=15% Similarity=0.186 Sum_probs=130.4
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (333)
++..+....+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.++++... ..++.++.+|+
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~ 108 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI 108 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence 4444556667777777788899999999999998887764 45999999999999999987654 34799999999
Q ss_pred CCCCCCCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh-hhccCCCCCHHHH
Q 019957 229 CRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEI 305 (333)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~l 305 (333)
...|+++++||+|++..+++|++ ++..+++++.++|||||.|++.++..... ..+ ...+... ......+.+.+++
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI-ENW-DEEFKAYIKKRKYTLIPIQEY 186 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc-cCc-HHHHHHHHHhcCCCCCCHHHH
Confidence 98888889999999999999986 78899999999999999999998765321 112 1111111 1123456799999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019957 306 EDLCTSCGLTNYTSKV 321 (333)
Q Consensus 306 ~~ll~~aGf~~v~~~~ 321 (333)
..+++++||++++...
T Consensus 187 ~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 187 GDLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHHCCCCeeeEEe
Confidence 9999999999988544
No 10
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.87 E-value=8.5e-21 Score=173.36 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=122.8
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
+.+...+.+..+.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++......+. ..++.++.+|++++|+ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-c
Confidence 5566677666788999999999999999999874 3699999999988765543222211 3479999999999998 7
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
++||+|++..+++|..++..+|++++++|+|||.+++.+......... .............+...+.+++..+|+++||
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF 267 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGF 267 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCC
Confidence 899999999999999999999999999999999999987654322111 1111111112223345689999999999999
Q ss_pred cEEEEE
Q 019957 315 TNYTSK 320 (333)
Q Consensus 315 ~~v~~~ 320 (333)
++++..
T Consensus 268 ~~i~~~ 273 (322)
T PRK15068 268 KDVRIV 273 (322)
T ss_pred ceEEEE
Confidence 998864
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.87 E-value=9.8e-22 Score=162.16 Aligned_cols=148 Identities=24% Similarity=0.406 Sum_probs=113.0
Q ss_pred HHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 156 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
+.+..+.. ..++.+|||||||+|.++..+++.+. +++|+|+++.+++. . .......+....+..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCH
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhcc
Confidence 34444443 35678999999999999999988876 99999999999877 1 223333333444456
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHHhCC
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~~aG 313 (333)
+++||+|+++.+|+|++|+..+|+++.++|||||++++.++.........+..+..... ..|..+++.++++.+++++|
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 155 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAG 155 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999999864211111111111111 16788999999999999999
Q ss_pred CcEEE
Q 019957 314 LTNYT 318 (333)
Q Consensus 314 f~~v~ 318 (333)
|++++
T Consensus 156 ~~iv~ 160 (161)
T PF13489_consen 156 FEIVE 160 (161)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99986
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.86 E-value=1.3e-20 Score=167.45 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=125.2
Q ss_pred HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCC
Q 019957 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASG 236 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~ 236 (333)
+.+.+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....++ ..++.++++|+.+++ +.++
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHHHHhhhcCC
Confidence 334443 3467999999999999999999865 999999999999999999888764 567899999997764 5578
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHH---Hh-------hhccCCCCCHHHH
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLR---ER-------ILQNYNYLTEEEI 305 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~---~~-------~~~~~~~~t~~~l 305 (333)
+||+|++..+++|+.+|..+++++.++|||||++++..++....... .+...+. .. .....+.++++++
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 191 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV 191 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999988765321000 0000000 00 0112346889999
Q ss_pred HHHHHhCCCcEEEEEEeCeE
Q 019957 306 EDLCTSCGLTNYTSKVQQSF 325 (333)
Q Consensus 306 ~~ll~~aGf~~v~~~~~~~~ 325 (333)
.++++++||+++....-..|
T Consensus 192 ~~~l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 192 YQWLEEAGWQIMGKTGVRVF 211 (255)
T ss_pred HHHHHHCCCeEeeeeeEEEE
Confidence 99999999999875444444
No 13
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.86 E-value=1.5e-20 Score=170.07 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=121.2
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
..+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.++..++......+. ..++.+..+++++++..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-
Confidence 4566666667788999999999999999888874 3799999999998765432221110 35788888999888754
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
.+||+|++.++++|+++|..+|++++++|||||.|++.+......... .............+..++.+++..+++++||
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence 489999999999999999999999999999999999987654322111 1111111122233456799999999999999
Q ss_pred cEEEEEE
Q 019957 315 TNYTSKV 321 (333)
Q Consensus 315 ~~v~~~~ 321 (333)
+.+++..
T Consensus 267 ~~V~i~~ 273 (314)
T TIGR00452 267 ENFRILD 273 (314)
T ss_pred eEEEEEe
Confidence 9998543
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.86 E-value=6.4e-22 Score=167.71 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=121.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||||||.|.++..+++.|. +|+|+|+++.+++.|+.+..+.++ .+++.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv----~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGV----NIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccc----cccchhhhHHHHHhcCCCccEEEEh
Confidence 4688999999999999999999985 999999999999999998887654 5778888888887666899999999
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc--chhhHH-HHHhhh----ccCCCCCHHHHHHHHHhCCCcEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRV-LRERIL----QNYNYLTEEEIEDLCTSCGLTNY 317 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~-~~~~~~----~~~~~~t~~~l~~ll~~aGf~~v 317 (333)
.||||++||..+++.+.+.+||||.++++|+++..... ..+... +....+ ....+.-++|+..++...|+.+.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 99999999999999999999999999999999762111 111111 111112 33457788999999999999876
Q ss_pred EE
Q 019957 318 TS 319 (333)
Q Consensus 318 ~~ 319 (333)
..
T Consensus 212 ~~ 213 (243)
T COG2227 212 DR 213 (243)
T ss_pred ee
Confidence 63
No 15
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.85 E-value=2.2e-19 Score=161.17 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=122.6
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (333)
...++.+|||+|||+|..+..+++. ++..+++|+|+++.+++.|+++....+ ..++.++.+|++.+++.+++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence 3456889999999999988776665 555689999999999999999887766 458899999999999888899999
Q ss_pred EeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
++..+++|+++...+++++.++|||||+|++.+.........................++.+++.++++++||..++...
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 99999999999999999999999999999998876533221111111111111223457889999999999999877533
No 16
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.84 E-value=1.9e-19 Score=164.13 Aligned_cols=145 Identities=22% Similarity=0.309 Sum_probs=117.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.++++.. ..++.++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEc
Confidence 35679999999999999988887655699999999999999998643 236789999999999888999999999
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
.+++|++++..+++++.++|||||.+++..+.... .+..+.+.. ....+.+.+++.++++++||+.++...
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---~~~~r~~~~---~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---FWLSRFFAD---VWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---hhHHHHhhh---hhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99999999999999999999999999887654321 111111111 112356899999999999999988644
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=5.7e-20 Score=163.41 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=116.8
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
..+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.+++ .++.++.+|+++++ .+
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CC
Confidence 34455566667789999999999999999998777799999999999999975 25789999998775 46
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCC-Ccchhh-----HHHHHhhh-----ccCCCCCHHH
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-STSLTG-----RVLRERIL-----QNYNYLTEEE 304 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~-----~~~~~~~~-----~~~~~~t~~~ 304 (333)
++||+|+++.++||++++..++++++++|||||.+++..+..... ...... ..|..... ....+.+.++
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 167 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG 167 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence 799999999999999999999999999999999999986543111 111100 01111111 1234578999
Q ss_pred HHHHHHhCCCcEEE
Q 019957 305 IEDLCTSCGLTNYT 318 (333)
Q Consensus 305 l~~ll~~aGf~~v~ 318 (333)
+.++|+++||++..
T Consensus 168 ~~~~l~~aGf~v~~ 181 (255)
T PRK14103 168 YAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHhCCCeEEE
Confidence 99999999998544
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.84 E-value=4.2e-19 Score=156.09 Aligned_cols=176 Identities=23% Similarity=0.343 Sum_probs=135.9
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
..+...+...++.+|||+|||+|.++..++..++ ..+++++|+++.+++.+++++...+. ..++.++.+|+...++.
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccCCCC
Confidence 3344445555678999999999999999998875 57999999999999999998766543 45789999999888877
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHH------------H-------hhh
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLR------------E-------RIL 294 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~------------~-------~~~ 294 (333)
.++||+|++..+++|+.++..+++++.++|+|||.+++.+........ ......+. . ...
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAE 198 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHH
Confidence 789999999999999999999999999999999999998765532210 00000000 0 001
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeCC
Q 019957 295 QNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQKP 333 (333)
Q Consensus 295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~kp 333 (333)
....+++.+++.++++++||++++... .+.+.++.+.||
T Consensus 199 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 199 SIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 113467899999999999999888654 366689999987
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.84 E-value=2.6e-20 Score=164.66 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=130.3
Q ss_pred CCCcHHHHHHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE
Q 019957 148 FPGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL 223 (333)
Q Consensus 148 ~~~~~~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~ 223 (333)
.|..+.....+...+. ..++.+|||||||+|..+..+++. .+..+++|+|+|+.|++.|++++...+. ..++.+
T Consensus 36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v~~ 113 (247)
T PRK15451 36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDV 113 (247)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEE
Confidence 3445555544443332 235679999999999999888873 4667999999999999999999887653 457999
Q ss_pred EEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccC--CCcchhhHHHHH--------
Q 019957 224 VRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRE-------- 291 (333)
Q Consensus 224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~-------- 291 (333)
+++|+.++++. .+|+|+++.++||+++. ..++++++++|||||.|++.+..... ...+++...+..
T Consensus 114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s 191 (247)
T PRK15451 114 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYS 191 (247)
T ss_pred EeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCC
Confidence 99999988764 59999999999999754 57899999999999999998855321 111211111110
Q ss_pred ---------hhhccCCCCCHHHHHHHHHhCCCcEEEEE-EeCeEEEEEEeCC
Q 019957 292 ---------RILQNYNYLTEEEIEDLCTSCGLTNYTSK-VQQSFIMFAAQKP 333 (333)
Q Consensus 292 ---------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~-~~~~~~~~~a~kp 333 (333)
.........++++..++|+++||+.+... ....|..+.|+||
T Consensus 192 ~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~ 243 (247)
T PRK15451 192 ELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKA 243 (247)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhheec
Confidence 01123445789999999999999887653 2334455555553
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.84 E-value=1.4e-19 Score=157.62 Aligned_cols=152 Identities=20% Similarity=0.141 Sum_probs=111.4
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (333)
+.+|||||||||.++..+.+.+ ..+|+|+|+|++|++.|+++ ..++++|++.+|+++++||+|++..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence 6799999999999999999885 34999999999999999863 23578999999999999999999999
Q ss_pred cccCCChHHHHHHHHHhccCCcEEEEEEeccc-CCCcchhhHHHHH-------------------hhhccCCCCCHHHHH
Q 019957 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRY-TSSTSLTGRVLRE-------------------RILQNYNYLTEEEIE 306 (333)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~t~~~l~ 306 (333)
++|++|+.+++++++|+|||.+ ++.+...+ ......+...+.. -......+.+.+++.
T Consensus 120 l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~ 197 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR 197 (226)
T ss_pred hhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999942 22222221 1111111111110 011334577889999
Q ss_pred HHHHhC-CCcEEEEEEeCeEEEEEEeC
Q 019957 307 DLCTSC-GLTNYTSKVQQSFIMFAAQK 332 (333)
Q Consensus 307 ~ll~~a-Gf~~v~~~~~~~~~~~~a~k 332 (333)
++++++ ++...+....+.-.+++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 198 EIFEKYADIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHhCceEEEEccccEEEEEEEee
Confidence 999996 34334444566667888876
No 21
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.84 E-value=6e-20 Score=161.14 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=129.4
Q ss_pred HHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 019957 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN 214 (333)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~ 214 (333)
.+..|+..+.+ +++...+.+..+.+|||||||+|+++..+...++ ..|+|+|++.....+.+-...-.|
T Consensus 94 IDtEWrSd~KW----------~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg 162 (315)
T PF08003_consen 94 IDTEWRSDWKW----------DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG 162 (315)
T ss_pred ecccccccchH----------HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC
Confidence 45566665554 7788888778899999999999999999999984 579999999876655433222222
Q ss_pred cCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHHhh
Q 019957 215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERI 293 (333)
Q Consensus 215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~ 293 (333)
. ...+.++...++++|. .+.||+|+|.+||.|..+|...|++++..|++||.+++.|........ .++-..-....
T Consensus 163 ~--~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m 239 (315)
T PF08003_consen 163 Q--DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKM 239 (315)
T ss_pred C--CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCC
Confidence 1 2234444457788887 789999999999999999999999999999999999999877543222 11111122234
Q ss_pred hccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957 294 LQNYNYLTEEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 294 ~~~~~~~t~~~l~~ll~~aGf~~v~~~ 320 (333)
...+...|...+..+++++||+.+++.
T Consensus 240 ~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 240 RNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred CceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 455666799999999999999998864
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.83 E-value=5.9e-20 Score=150.49 Aligned_cols=143 Identities=20% Similarity=0.394 Sum_probs=111.5
Q ss_pred CCCeEEEEcCCcCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (333)
.+.+|||+|||+|.++..++ ..++..+++|+|+|+.+++.|+++++..+ ..++.++++|+.+++ +. ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence 46799999999999999999 45667899999999999999999998877 458999999999977 54 7999999
Q ss_pred eccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHH--Hhhhc-cC-CCCCHHHHHHHHHhCC
Q 019957 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--ERILQ-NY-NYLTEEEIEDLCTSCG 313 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~t~~~l~~ll~~aG 313 (333)
+..+++|+.++..+++++.++|++||.+++.++.........+..... ..... .. .. +.+++..+++++|
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 999999999999999999999999999999998721111111111111 00001 11 12 7889999999987
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.83 E-value=7.7e-19 Score=169.77 Aligned_cols=159 Identities=14% Similarity=0.206 Sum_probs=126.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++.... ..++.+..+|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 44556666665667899999999999999888865 559999999999999998876432 3478999999998888
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
++++||+|++..+++|++++..++++++++|||||.+++.++....... ..+...+. .......+.+++.++++++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---QRGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---hcCCCCCCHHHHHHHHHHC
Confidence 8889999999999999999999999999999999999999876542111 11111111 1224578899999999999
Q ss_pred CCcEEEEE
Q 019957 313 GLTNYTSK 320 (333)
Q Consensus 313 Gf~~v~~~ 320 (333)
||+++...
T Consensus 406 GF~~i~~~ 413 (475)
T PLN02336 406 GFDDVIAE 413 (475)
T ss_pred CCeeeeee
Confidence 99988653
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.83 E-value=4.1e-19 Score=157.58 Aligned_cols=150 Identities=23% Similarity=0.302 Sum_probs=120.1
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
.+.+.+.+...++.+|||+|||+|.++..+.+.+. +++++|+|+.+++.++++. ....++.+|++.+|+.
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence 34555666655677999999999999999987654 9999999999999998852 2356889999999988
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHhC
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~a 312 (333)
+++||+|+++.++++..|+..+|+++.++|||||.+++.++.... .+.+...+.. ..+....+++.+++..++...
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~--~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS--LPELHQAWQAVDERPHANRFLPPDAIEQALNGW 178 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc--hHHHHHHHHHhccCCccccCCCHHHHHHHHHhC
Confidence 889999999999999999999999999999999999999876531 1221222222 122345688999999999999
Q ss_pred CCcE
Q 019957 313 GLTN 316 (333)
Q Consensus 313 Gf~~ 316 (333)
|+..
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8864
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=8e-19 Score=154.09 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=134.1
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
.+.+.+.+...+|.+|||||||.|.++..+++.+ +.+|+|+++|+++.+.+++++...|+ ..+++++..|..++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc--
Confidence 4677788888999999999999999999999997 67999999999999999999999996 568999999988874
Q ss_pred CCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957 235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
+.||.|++..++||+.. -..+++.++++|+|||++++.+.............++....-+.....+..++....+++
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~ 214 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEA 214 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhc
Confidence 45999999999999976 789999999999999999999988764222122333333333555667889999999999
Q ss_pred CCcEEEEEE
Q 019957 313 GLTNYTSKV 321 (333)
Q Consensus 313 Gf~~v~~~~ 321 (333)
||.+.....
T Consensus 215 ~~~v~~~~~ 223 (283)
T COG2230 215 GFVVLDVES 223 (283)
T ss_pred CcEEehHhh
Confidence 999887543
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.82 E-value=2e-19 Score=158.34 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=121.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (333)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++++..+. ..++.++.+|+..++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCCCC--CCCEEee
Confidence 56799999999999999998863 567999999999999999998876542 45789999999988865 5899999
Q ss_pred ccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCC--CcchhhHHHH-----------------HhhhccCCCCCH
Q 019957 244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS--STSLTGRVLR-----------------ERILQNYNYLTE 302 (333)
Q Consensus 244 ~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~~t~ 302 (333)
..+++|+++ +..+++++.++|||||.+++.++..... ..+.+...+. .........++.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 999999964 4689999999999999999998754311 1111111110 011134567899
Q ss_pred HHHHHHHHhCCCcEEEEE-EeCeEEEEEEe
Q 019957 303 EEIEDLCTSCGLTNYTSK-VQQSFIMFAAQ 331 (333)
Q Consensus 303 ~~l~~ll~~aGf~~v~~~-~~~~~~~~~a~ 331 (333)
+++..+++++||+.++.. ....|..++++
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 999999999999876642 23333444444
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.82 E-value=2.2e-18 Score=151.38 Aligned_cols=162 Identities=28% Similarity=0.349 Sum_probs=125.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+..+++.
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence 455566666778899999999999999998875 5679999999999999998873321 46799999999988888
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccC-----CCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-----SSTSLTGRVLRERILQNYNYLTEEEIEDLC 309 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll 309 (333)
+++||+|++..+++|+.++..+++++.++|||||.+++.++.... ....................++..++..++
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 889999999999999999999999999999999999998864221 111111111111111233455678899999
Q ss_pred HhCCCcEEEEEE
Q 019957 310 TSCGLTNYTSKV 321 (333)
Q Consensus 310 ~~aGf~~v~~~~ 321 (333)
+++||+++....
T Consensus 165 ~~aGf~~~~~~~ 176 (241)
T PRK08317 165 REAGLTDIEVEP 176 (241)
T ss_pred HHcCCCceeEEE
Confidence 999999876533
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=1.6e-19 Score=135.22 Aligned_cols=95 Identities=34% Similarity=0.588 Sum_probs=84.0
Q ss_pred EEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccC
Q 019957 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250 (333)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~ 250 (333)
||+|||+|.++..+++. +..+++++|+++.+++.++++.... ++.+..+|++++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 4559999999999999999986543 4569999999999999999999999999999
Q ss_pred CChHHHHHHHHHhccCCcEEEE
Q 019957 251 PSPSNAVAEISRILRSGGVFVG 272 (333)
Q Consensus 251 ~d~~~~l~~~~r~LkpgG~l~i 272 (333)
+++.++++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999986
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.81 E-value=1e-18 Score=149.22 Aligned_cols=146 Identities=20% Similarity=0.202 Sum_probs=113.4
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (333)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ..++.+..+|+..+++. +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-C
Confidence 344455555678999999999999999999865 99999999999999999888766 35688999999887764 5
Q ss_pred CcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
+||+|++..+++|++ +...+++++.++|||||++++.+....... +. .......++++++.++++ ||
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~--------~~~~~~~~~~~el~~~~~--~~ 163 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC--------TVGFPFAFKEGELRRYYE--GW 163 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC--------CCCCCCccCHHHHHHHhC--CC
Confidence 799999999999876 456899999999999999766544322110 00 001224578999999997 89
Q ss_pred cEEEE
Q 019957 315 TNYTS 319 (333)
Q Consensus 315 ~~v~~ 319 (333)
+++..
T Consensus 164 ~~~~~ 168 (197)
T PRK11207 164 EMVKY 168 (197)
T ss_pred eEEEe
Confidence 88774
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.81 E-value=6.9e-19 Score=153.48 Aligned_cols=143 Identities=18% Similarity=0.195 Sum_probs=118.3
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (333)
+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...++ ..++.++..|+...+++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 79999999999999999887667999999999999999999888775 56889999999776654 5899999999999
Q ss_pred cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957 249 CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
|+.++..+++++.++|||||.+++.++.... .... . .........+.++|.++++++||++++...
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~-~-----~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANL-LSAI-E-----HEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEccccc-Cccc-c-----ccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 9999999999999999999999998875421 0000 0 001223367899999999999999988643
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.81 E-value=9e-19 Score=155.95 Aligned_cols=162 Identities=18% Similarity=0.179 Sum_probs=117.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
.++.+.+.+...++.+|||||||.|.++..+++.+ +++|+|+.+|++..+.++++++..|+ ..++.+...|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG---
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeeccccCC
Confidence 34667777788899999999999999999999995 56999999999999999999999986 6789999999988753
Q ss_pred CCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchh----hHHHHHhhhccCCCCCHHHHHH
Q 019957 234 ASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT----GRVLRERILQNYNYLTEEEIED 307 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~l~~ 307 (333)
+||.|++..++||+. +...+++++.++|||||++++.+........... ..++....-+.....+..++..
T Consensus 127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILR 203 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence 899999999999995 5579999999999999999998776542111110 0222222223445678899999
Q ss_pred HHHhCCCcEEEEEE
Q 019957 308 LCTSCGLTNYTSKV 321 (333)
Q Consensus 308 ll~~aGf~~v~~~~ 321 (333)
.+++.||++.....
T Consensus 204 ~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 204 AAEDAGLEVEDVEN 217 (273)
T ss_dssp HHHHTT-EEEEEEE
T ss_pred HHhcCCEEEEEEEE
Confidence 99999999887543
No 32
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.5e-19 Score=154.19 Aligned_cols=147 Identities=26% Similarity=0.346 Sum_probs=113.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC----CeEEEEccCCCCCCCCCCcceEE
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH 242 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~V~ 242 (333)
+.+|||+|||+|.++..|++.|. +|+|+|+++.+++.|+++...... ... ++.+...+++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhcc---cccceee
Confidence 46799999999999999999986 999999999999999998544332 122 3667777777663 4699999
Q ss_pred eccccccCCChHHHHHHHHHhccCCcEEEEEEecccC--CCcchhhHHHHHhh-h----ccCCCCCHHHHHHHHHhCCCc
Q 019957 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRERI-L----QNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~~~-~----~~~~~~t~~~l~~ll~~aGf~ 315 (333)
|+.|+||+.||..++..+.+.|||||.+++++.++.- .....+...+..+. + ....+.+++++..+++.+|++
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999998751 11111111111111 1 223578899999999999998
Q ss_pred EEEE
Q 019957 316 NYTS 319 (333)
Q Consensus 316 ~v~~ 319 (333)
+...
T Consensus 244 v~~v 247 (282)
T KOG1270|consen 244 VNDV 247 (282)
T ss_pred hhhh
Confidence 7653
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.79 E-value=9.9e-18 Score=145.79 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=128.6
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
.+...+...++.+|||+|||+|.++..+.+.++. .+++++|+++.+++.++++... ..++.++.+|+.+.++..
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCCC
Confidence 3344444456789999999999999999988764 6899999999999999987651 457899999999888777
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHH-------------------hhhc
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE-------------------RILQ 295 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~-------------------~~~~ 295 (333)
++||+|++..+++|..++..+++++.++|+|||.+++.+........ ......+.. ....
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 89999999999999999999999999999999999998875432110 000000000 0011
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeC
Q 019957 296 NYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 332 (333)
Q Consensus 296 ~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~k 332 (333)
...+++.++|..+++++||+++.... .+...+++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 23467899999999999999876533 33335667665
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.78 E-value=1.6e-17 Score=145.94 Aligned_cols=139 Identities=27% Similarity=0.415 Sum_probs=115.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
.+.+|||+|||+|.++..+.+.++..+++++|+++.+++.++++.. +++.++.+|+.+.++.+++||+|++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 3568999999999999999999887789999999999999887642 368899999999988888999999999
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh-ccCCCCCHHHHHHHHHhCCCcEEE
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL-QNYNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
+++|+.++..+++++.++|||||.+++.++.... ...+..... ....+++.+++.+++.++ |..+.
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT------LHELRQSFGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccC------HHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 9999999999999999999999999998875531 111111111 345678999999999998 87665
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=6.7e-18 Score=150.44 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=116.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
+.+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++ ..++.++.+|+..+. .+
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence 445555566677899999999999999999887777999999999999999886 456889999998764 35
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH------HHHHhhh----ccCCCCCHHHH
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR------VLRERIL----QNYNYLTEEEI 305 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~t~~~l 305 (333)
++||+|+++.+++|++|+..+++++.++|||||.+++..+............ .|..... ....+.+.+++
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 171 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAY 171 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHH
Confidence 6999999999999999999999999999999999999764432111100000 1111111 12345678899
Q ss_pred HHHHHhCCCcE
Q 019957 306 EDLCTSCGLTN 316 (333)
Q Consensus 306 ~~ll~~aGf~~ 316 (333)
..++.++|+.+
T Consensus 172 ~~~l~~~g~~v 182 (258)
T PRK01683 172 YDALAPAACRV 182 (258)
T ss_pred HHHHHhCCCce
Confidence 99999999875
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=2.5e-18 Score=133.17 Aligned_cols=106 Identities=26% Similarity=0.414 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcceEEec
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~ 244 (333)
|+.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++....+. ..++.++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECccccCccc-CCCCCEEEEC
Confidence 46799999999999999999966677999999999999999999955553 78999999999 33333 4579999999
Q ss_pred c-ccccC---CChHHHHHHHHHhccCCcEEEEEE
Q 019957 245 A-ALHCW---PSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 245 ~-vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
. +++++ .+..++++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345789999999999999999976
No 37
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.76 E-value=5.1e-17 Score=148.27 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=122.6
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
+.+.+.+...+..+|||||||+|.++..+++++|..+++++|. +.+++.+++++...++ ..+++++.+|+.+.+++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCCCCC-
Confidence 4455555556678999999999999999999998889999997 7899999999888775 56899999999766654
Q ss_pred CCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH----h-hhccCCCCCHHHHHHH
Q 019957 236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----R-ILQNYNYLTEEEIEDL 308 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~t~~~l~~l 308 (333)
.+|+|++.+++|++.+. ..++++++++|||||++++.+........+.+...... . ......+.+.+++.++
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 293 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHH
Confidence 37999999999998765 47899999999999999999875543333321111111 0 0012234558999999
Q ss_pred HHhCCCcEEEE
Q 019957 309 CTSCGLTNYTS 319 (333)
Q Consensus 309 l~~aGf~~v~~ 319 (333)
|+++||+.++.
T Consensus 294 l~~aGf~~v~~ 304 (306)
T TIGR02716 294 LESLGYKDVTM 304 (306)
T ss_pred HHHcCCCeeEe
Confidence 99999998873
No 38
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=136.91 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=120.3
Q ss_pred HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEccCCCCC-CCC
Q 019957 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-FAS 235 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~~~ 235 (333)
+..++.......|||||||||.+-..+... |..+|+++|+++.|.+++.+.+.++. ..++. |+.++.+++| +++
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d 143 (252)
T KOG4300|consen 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLAD 143 (252)
T ss_pred hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccccc
Confidence 334555555567899999999887766533 45699999999999999999988874 55666 9999999998 889
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCC------CCCHHHHHHHH
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN------YLTEEEIEDLC 309 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~~l~~ll 309 (333)
+++|+|++..+|..+.||.+.|+++.|+|+|||++++.+.... ...++.+.+.......++ .+| .++.+.|
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~--~y~~~n~i~q~v~ep~~~~~~dGC~lt-rd~~e~L 220 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG--EYGFWNRILQQVAEPLWHLESDGCVLT-RDTGELL 220 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccc--cchHHHHHHHHHhchhhheeccceEEe-hhHHHHh
Confidence 9999999999999999999999999999999999999998764 112223333332222222 233 4556788
Q ss_pred HhCCCcEEEEEE
Q 019957 310 TSCGLTNYTSKV 321 (333)
Q Consensus 310 ~~aGf~~v~~~~ 321 (333)
+.+-|+..+...
T Consensus 221 eda~f~~~~~kr 232 (252)
T KOG4300|consen 221 EDAEFSIDSCKR 232 (252)
T ss_pred hhcccccchhhc
Confidence 899998877544
No 39
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.76 E-value=8.2e-18 Score=138.85 Aligned_cols=149 Identities=19% Similarity=0.309 Sum_probs=116.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-C
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F 233 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~ 233 (333)
+.|.+++.+ +.+|||+|||.|.++..|.+.- +.+.+|+|++++.+..+.++ ++.++++|+++ ++ |
T Consensus 5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence 556666554 7899999999999999999863 67999999999998888763 67899999965 43 8
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh------------hccCCCCC
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI------------LQNYNYLT 301 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~t 301 (333)
++++||.|+++.+|+++.+|..+|+|+.|+ |...+++.|+.......+ .-.+.++. .++.+++|
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~-~l~~~GrmPvt~~lPy~WYdTPNih~~T 147 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRL-QLLLRGRMPVTKALPYEWYDTPNIHLCT 147 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHH-HHHhcCCCCCCCCCCCcccCCCCccccc
Confidence 899999999999999999999999998665 667888877753111111 00011111 16678999
Q ss_pred HHHHHHHHHhCCCcEEEEEE
Q 019957 302 EEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 302 ~~~l~~ll~~aGf~~v~~~~ 321 (333)
..++++++++.|+++++...
T Consensus 148 i~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 148 IKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999988643
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.75 E-value=1.6e-17 Score=144.39 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=114.8
Q ss_pred HHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 156 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
+.+.+.+. ..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++...+. ..++.+..+|+..++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChhhCC-
Confidence 44555555 34578999999999999999988754 999999999999999998876542 347999999998876
Q ss_pred CCCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHH
Q 019957 234 ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCT 310 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~ 310 (333)
++||+|++..+++|++. ...+++++.+++++++++.+...........++...+.. ....+..+++.+++.++++
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALG 195 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence 68999999999999864 467899999998876655543211110000011111111 1123456789999999999
Q ss_pred hCCCcEEEEE
Q 019957 311 SCGLTNYTSK 320 (333)
Q Consensus 311 ~aGf~~v~~~ 320 (333)
++||+++...
T Consensus 196 ~~Gf~v~~~~ 205 (219)
T TIGR02021 196 ELGWKIVREG 205 (219)
T ss_pred HcCceeeeee
Confidence 9999998753
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.75 E-value=3.9e-17 Score=143.20 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=108.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCc
Q 019957 163 KSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (333)
...++.+|||+|||+|.++..+++. ++..+++|+|+|+.+++.|+++... .++.+...+...++..+++|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence 3345679999999999998887653 5556999999999999999886432 35667777777777777899
Q ss_pred ceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhh---HHHH------H-hhhccCCCCCHHHHH
Q 019957 239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG---RVLR------E-RILQNYNYLTEEEIE 306 (333)
Q Consensus 239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~---~~~~------~-~~~~~~~~~t~~~l~ 306 (333)
|+|+++.++||++++ ..+++++.++++ |.+++.+..........+. ..+. . ....+..+|+++++.
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999999999999986 479999999998 6667767655311000000 0000 0 112445789999999
Q ss_pred HHHHhCCCcEEEE
Q 019957 307 DLCTSCGLTNYTS 319 (333)
Q Consensus 307 ~ll~~aGf~~v~~ 319 (333)
+++++ ||++...
T Consensus 209 ~ll~~-Gf~~~~~ 220 (232)
T PRK06202 209 ALAPQ-GWRVERQ 220 (232)
T ss_pred HHhhC-CCeEEec
Confidence 99999 9998773
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.74 E-value=3.2e-16 Score=131.97 Aligned_cols=123 Identities=21% Similarity=0.178 Sum_probs=104.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (333)
+.+|||+|||+|..+..++...+..+|+++|+++.+++.++++.+..+ ..++.++.+|+.+++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 789999999999999999887777899999999999999999998887 3459999999988876 67999999975
Q ss_pred cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~ 320 (333)
+.++..+++++.++|||||++++..... ...++..+.+..|+.+.++.
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGRD-----------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------------hHHHHHHHHHhcCceEeeeE
Confidence 4567889999999999999999876321 23567888888899876653
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=9.8e-17 Score=144.94 Aligned_cols=137 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ . ++.+...|+...++ +++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~---l-~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN---L-NIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEechhcccc-cCCccEEEEc
Confidence 3456999999999999999998865 99999999999999999887765 2 78888889877655 6789999999
Q ss_pred cccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 245 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 245 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
.+++|+. +...+++++.++|+|||++++......... + ........+++++++++++. |++++.
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~-~--------~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY-P--------CPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC-C--------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 9999986 446889999999999999777654332110 0 01123456899999999975 888764
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.74 E-value=9.5e-17 Score=136.80 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=110.3
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (333)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....++ .+.+...|+...++. +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENL----PLRTDAYDINAAALN-E 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchhcccc-C
Confidence 444455555567999999999999999998865 999999999999999988876653 377778888766654 5
Q ss_pred CcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
+||+|++..+++|++ +...+++++.++|||||++++.+...... .+. .+.....++++++.+++. +|
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~~--------~~~~~~~~~~~el~~~f~--~~ 162 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YPC--------HMPFSFTFKEDELRQYYA--DW 162 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CCC--------CCCcCccCCHHHHHHHhC--CC
Confidence 899999999999985 34689999999999999977665433211 000 012234689999999996 48
Q ss_pred cEEEE
Q 019957 315 TNYTS 319 (333)
Q Consensus 315 ~~v~~ 319 (333)
+++..
T Consensus 163 ~~~~~ 167 (195)
T TIGR00477 163 ELLKY 167 (195)
T ss_pred eEEEe
Confidence 87764
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.73 E-value=1.1e-16 Score=140.37 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=120.9
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (333)
++.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++...+ ..+.++..++...+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence 34555555556788999999999999999988754 89999999999999998876643 25778888887664 3
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch--hhHH-HHH----hhhccCCCCCHHHHH
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRV-LRE----RILQNYNYLTEEEIE 306 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~-~~~----~~~~~~~~~t~~~l~ 306 (333)
.+++||+|++..+++|++++..+++.+.++|+|||.+++.++......... .... ... ....+..+++.+++.
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA 190 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence 457999999999999999999999999999999999999876543111000 0000 000 011234578999999
Q ss_pred HHHHhCCCcEEEE
Q 019957 307 DLCTSCGLTNYTS 319 (333)
Q Consensus 307 ~ll~~aGf~~v~~ 319 (333)
++++++||+++..
T Consensus 191 ~~l~~~Gf~~v~~ 203 (233)
T PRK05134 191 AWLRQAGLEVQDI 203 (233)
T ss_pred HHHHHCCCeEeee
Confidence 9999999998875
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.72 E-value=9.2e-16 Score=129.99 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=106.8
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
..+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+ ..++.++.+|+.. ++ .
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~~-~~-~ 95 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAPI-EL-P 95 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCchh-hc-C
Confidence 44556666667889999999999999999988877899999999999999999887765 3478999988742 33 3
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
++||+|++....++ ...+++.+.++|+|||++++..... -+.+++..+++++||+
T Consensus 96 ~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~----------------------~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 96 GKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL----------------------ENLHSALAHLEKCGVS 150 (187)
T ss_pred cCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH----------------------hhHHHHHHHHHHCCCC
Confidence 58999999876544 4677999999999999998865322 1346788899999997
Q ss_pred EEEE
Q 019957 316 NYTS 319 (333)
Q Consensus 316 ~v~~ 319 (333)
.++.
T Consensus 151 ~~~~ 154 (187)
T PRK08287 151 ELDC 154 (187)
T ss_pred cceE
Confidence 6553
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.72 E-value=2.1e-16 Score=137.81 Aligned_cols=148 Identities=23% Similarity=0.296 Sum_probs=115.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEec
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 244 (333)
.+.+|||+|||+|.++..+.+.+. .++++|+++.+++.+++++...+ ..++.+..+|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 467999999999999999888765 79999999999999999887654 22688888998776644 3789999999
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHH-----HHh----hhccCCCCCHHHHHHHHHhCCCc
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL-----RER----ILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
++++|+.++..+++++.++|+|||.+++.+.+... ..+..... ... ......+++.+++.++++++||+
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP--KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 99999999999999999999999999998765431 11111100 000 01223567899999999999999
Q ss_pred EEEEE
Q 019957 316 NYTSK 320 (333)
Q Consensus 316 ~v~~~ 320 (333)
+++..
T Consensus 198 i~~~~ 202 (224)
T TIGR01983 198 VKDVK 202 (224)
T ss_pred eeeee
Confidence 98753
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.70 E-value=1.9e-16 Score=138.56 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=109.0
Q ss_pred HHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 156 KMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 156 ~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
+.+...+.. .++.+|||||||+|.++..+++.+. .++|+|+|+.+++.|+++....+. ..++.+..+|+..
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~-- 123 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLES-- 123 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCchh--
Confidence 344444443 4567999999999999999998875 799999999999999998877553 3578999988543
Q ss_pred CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-----hhhccCCCCCHHHH
Q 019957 233 FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-----RILQNYNYLTEEEI 305 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~t~~~l 305 (333)
.+++||+|++..+++|++++ ..+++++.+.+++++. +...+... .... ...... .......+++.+++
T Consensus 124 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (230)
T PRK07580 124 -LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPYTP--LLAL-LHWIGGLFPGPSRTTRIYPHREKGI 198 (230)
T ss_pred -ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCccH--HHHH-HHHhccccCCccCCCCccccCHHHH
Confidence 35789999999999998755 4678888887654443 33221110 0000 111111 11133457889999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019957 306 EDLCTSCGLTNYTSKV 321 (333)
Q Consensus 306 ~~ll~~aGf~~v~~~~ 321 (333)
.++++++||++.++..
T Consensus 199 ~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 199 RRALAAAGFKVVRTER 214 (230)
T ss_pred HHHHHHCCCceEeeee
Confidence 9999999999888543
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.69 E-value=7e-18 Score=127.82 Aligned_cols=97 Identities=25% Similarity=0.411 Sum_probs=66.8
Q ss_pred EEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C-CCCCcceEEeccccc
Q 019957 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-ASGFVDAVHAGAALH 248 (333)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-~~~~fD~V~~~~vl~ 248 (333)
||||||+|.++..+.+..+..+++|+|+|+.+++.+++++.... .........+..+.. . ..++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777899999999999988888887754 334444444443332 1 125999999999999
Q ss_pred cCCChHHHHHHHHHhccCCcEE
Q 019957 249 CWPSPSNAVAEISRILRSGGVF 270 (333)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG~l 270 (333)
|++++..+++.++++|||||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.69 E-value=2.1e-15 Score=126.84 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=112.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
.++...+...++.+|||+|||+|.++..+...++ +++++|+++.+++.+++++...+ .++.++.+|+.+.+ .
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--R 80 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--C
Confidence 3444555555667999999999999999999886 89999999999999999987654 36888999987654 4
Q ss_pred CCcceEEeccccccCCCh---------------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh
Q 019957 236 GFVDAVHAGAALHCWPSP---------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL 294 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~---------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 294 (333)
++||+|+++..+++.++. ..+++++.++|||||.+++.+....
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------- 144 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------- 144 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------
Confidence 589999999887766542 4579999999999999999875331
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEEeCeE
Q 019957 295 QNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF 325 (333)
Q Consensus 295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~~ 325 (333)
...++...+++.||+.......+.+
T Consensus 145 ------~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 145 ------GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred ------ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 2568889999999998876655554
No 51
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.68 E-value=1.1e-15 Score=130.27 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=106.9
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C-CC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF 233 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~ 233 (333)
+.+.+.++ ++.+|||||||+|.++..+++.. ...++|+|+++.+++.+++ .++.++.+|+.+ + ++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAF 71 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhccccc
Confidence 34445543 46799999999999999887654 4478999999999988864 246788899865 4 36
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-------------hhhccCCCC
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-------------RILQNYNYL 300 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 300 (333)
.+++||+|+++.+++|++++..+|+++.++++ .+++..++..... .....+.. ....+.+++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWR--VRWSILTKGRMPVTGELPYDWYNTPNIHFC 146 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHH--HHHHHHhCCccccCCCCCccccCCCCcccC
Confidence 67899999999999999999999999888755 4455444321000 00000000 011345689
Q ss_pred CHHHHHHHHHhCCCcEEEEEE
Q 019957 301 TEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 301 t~~~l~~ll~~aGf~~v~~~~ 321 (333)
+.+++.++++++||++++...
T Consensus 147 s~~~~~~ll~~~Gf~v~~~~~ 167 (194)
T TIGR02081 147 TIADFEDLCGELNLRILDRAA 167 (194)
T ss_pred cHHHHHHHHHHCCCEEEEEEE
Confidence 999999999999999988644
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=1.8e-15 Score=127.03 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
++.+|||+|||+|.++..++..++..+|+++|+|+.+++.++++.+..+ ..++.++++|+.+++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 4779999999999999999888777789999999999999999888776 457999999998874 357999999876
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+ .+....++.+.++|+|||++++..
T Consensus 118 -~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3 456677889999999999999864
No 53
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=5.3e-16 Score=127.95 Aligned_cols=126 Identities=23% Similarity=0.268 Sum_probs=96.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957 194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (333)
Q Consensus 194 ~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 273 (333)
+|+|+|+.|++.|+++....+.....+++++++|+.++|+.+++||+|++..+++|++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532210134799999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCcch-hh-----------HHHHH-------hhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 274 TFLRYTSSTSL-TG-----------RVLRE-------RILQNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 274 ~~~~~~~~~~~-~~-----------~~~~~-------~~~~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
+...+...... .. ..+.. .......+.+.+++.++|+++||+.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 88754221110 00 00000 0012246789999999999999998874
No 54
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.67 E-value=1.6e-15 Score=137.53 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEcc
Q 019957 153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRAD 227 (333)
Q Consensus 153 ~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d 227 (333)
...+.+.+++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.+..+.. ...++.+..+|
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 334555555543 2567999999999999999998764 9999999999999999987654210 02467888888
Q ss_pred CCCCCCCCCCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh-----ccCCCC
Q 019957 228 VCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL-----QNYNYL 300 (333)
Q Consensus 228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 300 (333)
+..+ +++||+|++..+++|+++.. .+++.+.+ +.+||.++...+.. ..... .+.+....+ ...+++
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~--~~~~~-l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKT--LYYDI-LKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcc--hHHHH-HHHHHhhcCCCCcCceeeeC
Confidence 7654 57899999999999997753 45566654 45555544322211 11111 111111111 112356
Q ss_pred CHHHHHHHHHhCCCcEEEEEE
Q 019957 301 TEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 301 t~~~l~~ll~~aGf~~v~~~~ 321 (333)
++++++++++++||++.....
T Consensus 279 s~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 279 AEADVERALKKAGWKVARREM 299 (315)
T ss_pred CHHHHHHHHHHCCCEEEEEEE
Confidence 899999999999999877543
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=5.9e-16 Score=149.73 Aligned_cols=149 Identities=20% Similarity=0.268 Sum_probs=115.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC--CCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF 233 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~ 233 (333)
..+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++.... .+++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence 4555566655677999999999999999998865 999999999999887653221 457899999996 4567
Q ss_pred CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957 234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 311 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 311 (333)
++++||+|++..+++|+++. ..+++++.++|||||++++.+...... . .+ .......++.+...+..++.+
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-----~-~~-~~~~~~~~~~~~~~~~~~f~~ 172 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-----G-DS-KRKNNPTHYREPRFYTKVFKE 172 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-----C-cc-cccCCCCeecChHHHHHHHHH
Confidence 78899999999999999874 689999999999999999987543210 0 00 111133445668899999999
Q ss_pred CCCcEEE
Q 019957 312 CGLTNYT 318 (333)
Q Consensus 312 aGf~~v~ 318 (333)
+||....
T Consensus 173 ~~~~~~~ 179 (475)
T PLN02336 173 CHTRDED 179 (475)
T ss_pred heeccCC
Confidence 9998764
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.67 E-value=1.7e-15 Score=141.51 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
..+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++... ..+.+...|...+ +
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence 445566666778899999999999999998874 45999999999999999987632 2477888887765 4
Q ss_pred CCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCC---CcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957 236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS---STSLTGRVLRERILQNYNYLTEEEIEDLCT 310 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~ 310 (333)
++||+|++..+++|+.+ +..+++++.++|||||.+++.++..... ...++. ..........+.+++...++
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~----~yifp~g~lps~~~i~~~~~ 302 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWIN----KYIFPNGCLPSVRQIAQASE 302 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCce----eeecCCCcCCCHHHHHHHHH
Confidence 68999999999999954 4689999999999999999988654321 111111 11112234567888888766
Q ss_pred hCCCcEEEEEE
Q 019957 311 SCGLTNYTSKV 321 (333)
Q Consensus 311 ~aGf~~v~~~~ 321 (333)
.||++.....
T Consensus 303 -~~~~v~d~~~ 312 (383)
T PRK11705 303 -GLFVMEDWHN 312 (383)
T ss_pred -CCcEEEEEec
Confidence 5898776543
No 57
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.67 E-value=1.9e-15 Score=126.60 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=104.8
Q ss_pred HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (333)
+.+.++..+++++||+|||.|+.+.+|+++|. +|+++|.|+..++.+++..+..++ .+.....|+....++ +.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~l----~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEGL----DIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcCc----eeEEEEecchhcccc-CC
Confidence 34445555678999999999999999999988 999999999999999888877654 599999999887764 68
Q ss_pred cceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957 238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
||+|++..|++|+..+ ..+++.+...++|||++++.+...... .+. .......+.+.|+...+. ||+
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~--------~~~~~f~~~~~EL~~~y~--dW~ 163 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPC--------PSPFPFLLKPGELREYYA--DWE 163 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S----------SS--S--B-TTHHHHHTT--TSE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCC--------CCCCCcccCHHHHHHHhC--CCe
Confidence 9999999999998644 568999999999999999977654321 111 112344567789998887 587
Q ss_pred EEE
Q 019957 316 NYT 318 (333)
Q Consensus 316 ~v~ 318 (333)
+++
T Consensus 164 il~ 166 (192)
T PF03848_consen 164 ILK 166 (192)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.67 E-value=8.8e-16 Score=131.54 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCC--CCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~V~ 242 (333)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+ ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 5679999999999999999988777799999999999999999888765 46799999999 6665 6678999999
Q ss_pred eccccccCC--------ChHHHHHHHHHhccCCcEEEEEEec
Q 019957 243 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 243 ~~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
+.....+.. ....+++++.++|||||.|++.+..
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543221 1367899999999999999998754
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.66 E-value=4.6e-15 Score=127.69 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=103.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEccCCCCCCC-
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 234 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 234 (333)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999999987 99999999999998644221100 00134689999999887643
Q ss_pred CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
.+.||.|+...+++|++.. ...++.+.++|||||++++.+....... . ....+.++.+++.+++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~--~---------~gpp~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE--M---------AGPPFSVSPAEVEALYGG- 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC--C---------CCcCCCCCHHHHHHHhcC-
Confidence 4579999999999999644 3689999999999999888776542110 0 112346899999999964
Q ss_pred CCcEE
Q 019957 313 GLTNY 317 (333)
Q Consensus 313 Gf~~v 317 (333)
+|++.
T Consensus 179 ~~~i~ 183 (213)
T TIGR03840 179 HYEIE 183 (213)
T ss_pred CceEE
Confidence 34443
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.66 E-value=1.7e-14 Score=125.16 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=104.9
Q ss_pred hhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCC
Q 019957 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG 236 (333)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~ 236 (333)
.+...++.+|||+|||+|.++..+++..+...|+++|+++.|++.+.++.+. ..++.++.+|+... ++ .+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhc-cc
Confidence 3666778899999999999999999875455899999999999988776554 35788999998652 22 35
Q ss_pred CcceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957 237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG 313 (333)
+||+|++. +.+| ..+++++.++|||||.++++.+... ..+.. .+... .++..++++++|
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~---~d~~~--------~~~~~--~~~~~~~l~~aG 202 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS---IDVTK--------DPKEI--FKEEIRKLEEGG 202 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc---ccCcC--------CHHHH--HHHHHHHHHHcC
Confidence 69999853 3344 3458999999999999999654321 11100 00011 134459999999
Q ss_pred CcEEEEEEeCeE----EEEEEeC
Q 019957 314 LTNYTSKVQQSF----IMFAAQK 332 (333)
Q Consensus 314 f~~v~~~~~~~~----~~~~a~k 332 (333)
|+.++......| +++++++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEEc
Confidence 999987665444 5555554
No 61
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.66 E-value=2.7e-16 Score=119.56 Aligned_cols=95 Identities=32% Similarity=0.552 Sum_probs=79.8
Q ss_pred EEEEcCCcCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec-c
Q 019957 170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A 245 (333)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~ 245 (333)
|||+|||+|..+..+.+.+ +..+++|+|+|+.+++.++++....+ .+++++++|+.++++.+++||+|+++ .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 34699999999999999999887643 48999999999998888899999995 5
Q ss_pred ccccCCCh--HHHHHHHHHhccCCc
Q 019957 246 ALHCWPSP--SNAVAEISRILRSGG 268 (333)
Q Consensus 246 vl~h~~d~--~~~l~~~~r~LkpgG 268 (333)
+++|+.+. ..+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998754 589999999999998
No 62
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.66 E-value=5.6e-15 Score=130.82 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=104.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|++++..+++ ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence 4578999999999999998887764 3699999999999999999887653 233333222 2279999987
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 324 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~ 324 (333)
...+. ...++.++.++|||||.+++...... ..+++...+++.||++++....+.
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~~~ 241 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGILEE----------------------QADEVLEAYEEAGFTLDEVLERGE 241 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECcHh----------------------hHHHHHHHHHHCCCEEEEEEEeCC
Confidence 54332 35678999999999999999764321 346888999999999999999999
Q ss_pred EEEEEEeCC
Q 019957 325 FIMFAAQKP 333 (333)
Q Consensus 325 ~~~~~a~kp 333 (333)
|..+.++|+
T Consensus 242 W~~~~~~~~ 250 (250)
T PRK00517 242 WVALVGKKK 250 (250)
T ss_pred EEEEEEEeC
Confidence 999998875
No 63
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.66 E-value=8.6e-15 Score=121.21 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=107.2
Q ss_pred HHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCc
Q 019957 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (333)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (333)
...++...-.++||+|||.|.++..|+.+.. +++++|+|+.+++.|++++.. .+++.++++|+.+. .+.++|
T Consensus 36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCC-CCCCCe
Confidence 3345555557899999999999999999975 999999999999999999876 56899999999775 357899
Q ss_pred ceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957 239 DAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 239 D~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
|+|+++.+++++.+. ..+++.+...|+|||.|++.+.... .-.+ -.+.+..+.+.++|.+. |.
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~----------~c~~---wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA----------NCRR---WGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH----------HHHH---TT-S--HHHHHHHHHHH-SE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC----------cccc---cCcccchHHHHHHHHHH-hh
Confidence 999999999999764 4688999999999999999885321 1111 12456889999999876 55
Q ss_pred EEEEEE------eCeEEEEEEeCC
Q 019957 316 NYTSKV------QQSFIMFAAQKP 333 (333)
Q Consensus 316 ~v~~~~------~~~~~~~~a~kp 333 (333)
.|+... +...++...+||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEEEE--
T ss_pred heeEEEEcCCCCCCceEeeeecCC
Confidence 555332 233455555554
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.65 E-value=4.5e-15 Score=116.76 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=93.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~ 234 (333)
..+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...+ ..++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence 44555666556779999999999999999998767799999999999999999888765 4578899888765 3333
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.++||+|++....++ ...+++++.+.|||||.+++...
T Consensus 86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999776544 35889999999999999998753
No 65
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.65 E-value=2.3e-14 Score=122.51 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=103.2
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF 233 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~ 233 (333)
......+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++..++ ..++.++.+|+.+. +.
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHhh
Confidence 33445667778889999999999999988765 4456899999999999999999888764 46789999998763 33
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG 313 (333)
.+++||.|++.. ...++..+++++.++|||||++++...... +..++...+++.|
T Consensus 108 ~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------------------~~~~~~~~l~~~g 162 (198)
T PRK00377 108 INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILLE----------------------TVNNALSALENIG 162 (198)
T ss_pred cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHH----------------------HHHHHHHHHHHcC
Confidence 346899999854 345678899999999999999987553211 2356777788888
Q ss_pred Cc
Q 019957 314 LT 315 (333)
Q Consensus 314 f~ 315 (333)
|.
T Consensus 163 ~~ 164 (198)
T PRK00377 163 FN 164 (198)
T ss_pred CC
Confidence 84
No 66
>PLN03075 nicotianamine synthase; Provisional
Probab=99.65 E-value=8e-15 Score=130.46 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCcCHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRK--FAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (333)
++.+|+|||||.|.++.. ++..+++++++|+|+++++++.|++.+.. .++ ..+++|..+|+.+.+...+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL--~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL--SKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc--cCCcEEEECchhhcccccCCcCEEE
Confidence 678999999998844333 33457888999999999999999999864 554 5689999999987643357899999
Q ss_pred eccccccC--CChHHHHHHHHHhccCCcEEEEEEe
Q 019957 243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 243 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+. +++++ +++.++++.+.+.|+|||.+++...
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 99 88888 6889999999999999999999773
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.64 E-value=5.2e-15 Score=126.72 Aligned_cols=102 Identities=12% Similarity=0.235 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
++.+|||||||+|.++..+.+..+..+++|+|+|+.+++.|+++ .+++.+..+|+.+ |+++++||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 46789999999999999998875567999999999999999875 3457788999887 88889999999999
Q ss_pred ccccCC--ChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 246 vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+|+|++ +..++++++.+++ ++.+++.+...+
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999995 2357888888887 568888776543
No 68
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.63 E-value=1.3e-15 Score=126.45 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=118.0
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (333)
-+...+...+..+|.|+|||+|..+..|.++.|...++|+|-|++|++.|+++ .++++|..+|+.... +..
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQ 91 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCC
Confidence 34555666778899999999999999999999999999999999999999886 788999999998875 356
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH------HHHhhh----ccCCCCCHHHHH
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV------LRERIL----QNYNYLTEEEIE 306 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~t~~~l~ 306 (333)
.+|+++++.+|++++|-.++|..+...|.|||+|.+..|...........+. |..... ......+....-
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 8999999999999999999999999999999999998876532111111111 111111 234456777778
Q ss_pred HHHHhCCCc
Q 019957 307 DLCTSCGLT 315 (333)
Q Consensus 307 ~ll~~aGf~ 315 (333)
++|...+-+
T Consensus 172 ~lLa~~~~r 180 (257)
T COG4106 172 ELLAPLACR 180 (257)
T ss_pred HHhCcccce
Confidence 888777654
No 69
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.63 E-value=9.1e-15 Score=118.09 Aligned_cols=133 Identities=20% Similarity=0.346 Sum_probs=111.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecccc
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (333)
.+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+...+..+. ...|.|.+.|+....+..++||+|+--+.+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCCcccccceeEEeecCce
Confidence 399999999999999999998666799999999999999999888875 445999999998877888999999976666
Q ss_pred ccCC--------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 248 HCWP--------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 248 ~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
..+. .+...+..+.+.|+|||+|+|..-+ ||.+|+.+.++..||+....
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-----------------------~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-----------------------FTKDELVEEFENFNFEYLST 203 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-----------------------ccHHHHHHHHhcCCeEEEEe
Confidence 5431 1235678889999999999997743 57899999999999998886
Q ss_pred EEeCeE
Q 019957 320 KVQQSF 325 (333)
Q Consensus 320 ~~~~~~ 325 (333)
.....|
T Consensus 204 vp~ptF 209 (227)
T KOG1271|consen 204 VPTPTF 209 (227)
T ss_pred eccceE
Confidence 554444
No 70
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=4.3e-15 Score=143.63 Aligned_cols=107 Identities=19% Similarity=0.299 Sum_probs=93.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEE
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (333)
.++.+|||||||+|.++..+++..++.+++|+|+|+.|++.++++.... ..++.++++|+.++| +++++||+|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 3578999999999999999998888889999999999999999876543 246788999998887 7788999999
Q ss_pred eccccccCC-------------ChHHHHHHHHHhccCCcEEEEEEe
Q 019957 243 AGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 243 ~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
++.++||+. ++.++|+++.++|||||.+++.+.
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999998762 457899999999999999999875
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=1.4e-14 Score=124.39 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=92.9
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
....+.+.+...++.+|||||||+|+.+..+++.. +..+|+++|+++.+++.+++++...+. ..++.++.+|+.+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~--~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY--WGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEECCcccCC
Confidence 44666677777778899999999999998888764 245899999999999999999887663 346899999997654
Q ss_pred CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...++||+|++..+++|++ +++.++|+|||++++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 4467999999999988765 46889999999998854
No 72
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.62 E-value=2.2e-14 Score=123.96 Aligned_cols=140 Identities=21% Similarity=0.191 Sum_probs=102.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEccCCCCCCC-
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 234 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 234 (333)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....++++.++|+.+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4567999999999999999999887 99999999999998753211100 00135789999999887533
Q ss_pred CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
.+.||+|+...+++|++.. .+.++.+.++|||||++++.+....... . ......++.+++.+++..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~--~---------~gPp~~~~~~el~~~~~~- 181 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE--L---------AGPPFSVSDEEVEALYAG- 181 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc--C---------CCCCCCCCHHHHHHHhcC-
Confidence 3589999999999999644 4789999999999998666554432110 0 112246899999999964
Q ss_pred CCcEEE
Q 019957 313 GLTNYT 318 (333)
Q Consensus 313 Gf~~v~ 318 (333)
+|++..
T Consensus 182 ~~~i~~ 187 (218)
T PRK13255 182 CFEIEL 187 (218)
T ss_pred CceEEE
Confidence 254443
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=99.61 E-value=7.2e-14 Score=118.26 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=104.2
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
..+.+.+...++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++...+.. ..++.++.+|+.+ ++.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-cccc
Confidence 444555555667899999999999999999884 49999999999999999988776531 1128888898865 3345
Q ss_pred CCcceEEeccccccCC---------------------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh
Q 019957 236 GFVDAVHAGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL 294 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 294 (333)
++||+|+++..+.+.. ....+++++.++|||||.+++..+..
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------- 151 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------- 151 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------
Confidence 5899999875543311 13457999999999999998866321
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 295 QNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 295 ~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
...+++..+++++||++...
T Consensus 152 -----~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 152 -----TGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred -----CCHHHHHHHHHHCCCeeeee
Confidence 23467889999999987664
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.60 E-value=9.5e-15 Score=124.44 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~ 242 (333)
...+|||||||+|.++..+++..|...++|+|+++.+++.++++....+ ..++.++++|+.+++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 3458999999999999999999888899999999999999999888776 458999999997653 4456899999
Q ss_pred eccccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 243 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 243 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
+.....+.... ..+++++.++|||||.|++.+...
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 87643332221 468999999999999999988554
No 75
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=9.3e-14 Score=123.27 Aligned_cols=147 Identities=18% Similarity=0.328 Sum_probs=113.6
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
++.+.+++. ++.+|||+|||+|-++..+++.| ..+++|+|+++.+++.++++...+++ ...+.....+....+ .
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v--~~~~~~~~~~~~~~~-~ 226 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGV--ELLVQAKGFLLLEVP-E 226 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCC--chhhhcccccchhhc-c
Confidence 345555544 57899999999999999999998 45799999999999999999998875 222223323333322 2
Q ss_pred CCCcceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957 235 SGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG 313 (333)
.++||+|+++=. .++ ..+...+.+.|||||.++++-.... -.+.+.+.++++|
T Consensus 227 ~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------q~~~V~~a~~~~g 280 (300)
T COG2264 227 NGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSGILED----------------------QAESVAEAYEQAG 280 (300)
T ss_pred cCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEeehHh----------------------HHHHHHHHHHhCC
Confidence 369999998642 233 4678889999999999999875432 1367889999999
Q ss_pred CcEEEEEEeCeEEEEEEeCC
Q 019957 314 LTNYTSKVQQSFIMFAAQKP 333 (333)
Q Consensus 314 f~~v~~~~~~~~~~~~a~kp 333 (333)
|++++......|..++++|+
T Consensus 281 f~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 281 FEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred CeEeEEEecCCEEEEEEEcC
Confidence 99999999999999999874
No 76
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=4.4e-14 Score=121.92 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
......+.+.+...++.+|||||||+|+++..+++.. +..+|+++|+++.+++.+++++...+ ..++.++.+|...
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCccc
Confidence 3445667777777788999999999999998888773 34699999999999999999998876 4689999999877
Q ss_pred CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.....+.||+|++....++++ ..+.+.|||||++++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 655667999999988776653 45677899999998854
No 77
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.58 E-value=2.7e-15 Score=125.47 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=121.2
Q ss_pred CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE
Q 019957 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (333)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~ 225 (333)
.++..+....++|.. ....+-.++||+|||||.....+...-. ..+|+|+|++|++.|.++ ..--.+.+
T Consensus 106 L~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~~ 174 (287)
T COG4976 106 LGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLYV 174 (287)
T ss_pred hcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHHH
Confidence 344445444444433 3333457899999999999999998865 899999999999999885 22223455
Q ss_pred ccCCCC-C-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHH
Q 019957 226 ADVCRL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 303 (333)
Q Consensus 226 ~d~~~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 303 (333)
+++..+ + ..++.||+|++..||.++.+...++.-+...|+|||.|.++.-....... +.. .+...+-.++.
T Consensus 175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l------~ps~RyAH~~~ 247 (287)
T COG4976 175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVL------GPSQRYAHSES 247 (287)
T ss_pred HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eec------chhhhhccchH
Confidence 555432 2 44679999999999999999999999999999999999998765542211 111 11223345678
Q ss_pred HHHHHHHhCCCcEEEEEEeC---------eEEEEEEeCC
Q 019957 304 EIEDLCTSCGLTNYTSKVQQ---------SFIMFAAQKP 333 (333)
Q Consensus 304 ~l~~ll~~aGf~~v~~~~~~---------~~~~~~a~kp 333 (333)
-++.+++..||+++.+.... .-++++++||
T Consensus 248 YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 248 YVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred HHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 89999999999998864321 1166777765
No 78
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.58 E-value=3.5e-13 Score=110.79 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
++.-......|.+.++.+++|||||+|..+..++..+|..+++++|-++++++..+++.+..+ .+++.++.+++.+.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence 344456678888999999999999999999999988999999999999999999999999988 78999999999653
Q ss_pred -CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 310 (333)
Q Consensus 232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~ 310 (333)
+ ...++|.|+.... .+...+|+.+...|||||++++...... +.....+.++
T Consensus 97 L~-~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------------~~~~a~~~~~ 149 (187)
T COG2242 97 LP-DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------------TLAKALEALE 149 (187)
T ss_pred hc-CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------------HHHHHHHHHH
Confidence 3 2227999999887 3467889999999999999999775432 3346678889
Q ss_pred hCCC-cEEEEE
Q 019957 311 SCGL-TNYTSK 320 (333)
Q Consensus 311 ~aGf-~~v~~~ 320 (333)
+.|+ ++++..
T Consensus 150 ~~g~~ei~~v~ 160 (187)
T COG2242 150 QLGGREIVQVQ 160 (187)
T ss_pred HcCCceEEEEE
Confidence 9999 666543
No 79
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.57 E-value=2.1e-14 Score=127.81 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh----cCcC----------------
Q 019957 166 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNTI---------------- 216 (333)
Q Consensus 166 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~----~~~~---------------- 216 (333)
++.+|||+|||+|. ++..+.+.++ ..+++|+|+|+.+++.|++..-. .+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999996 4445555432 46899999999999999975310 0000
Q ss_pred ----CCCCeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957 217 ----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 217 ----~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 274 (333)
-..++.|.++|+.+.+++.++||+|+|.++++|++++ .++++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0136899999999887778899999999999999755 479999999999999999854
No 80
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.57 E-value=1.2e-14 Score=122.86 Aligned_cols=149 Identities=20% Similarity=0.246 Sum_probs=111.7
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC----CCCCCCCcceE
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV 241 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V 241 (333)
.+|||||||.|.....+.+..++ ..+++.|.|+.+++..+++.... ..++.-...|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999999888766 78999999999999988765442 2344444555532 24567899999
Q ss_pred EeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcch------hhHH-HHHhhhccCCCCCHHHHHHHHHhC
Q 019957 242 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL------TGRV-LRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 242 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
++.+||-.++ ....++..++++|||||.+++.++..++...-. +... +........++|+.+++..++.++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999998875 335789999999999999999998876221110 1111 112233556899999999999999
Q ss_pred CCcEEEEE
Q 019957 313 GLTNYTSK 320 (333)
Q Consensus 313 Gf~~v~~~ 320 (333)
||..++..
T Consensus 229 gf~~~~~~ 236 (264)
T KOG2361|consen 229 GFEEVQLE 236 (264)
T ss_pred ccchhccc
Confidence 99887643
No 81
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=8.1e-14 Score=116.16 Aligned_cols=118 Identities=21% Similarity=0.367 Sum_probs=95.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
-.+.+.+.+...+..+|||+|||+|.++..+++.++..+++++|+++.+++.++++++.+++ .++.++..|+.+..
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~~- 94 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEAL- 94 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTTC-
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---cccccccccccccc-
Confidence 44567777766678899999999999999999999877799999999999999999999874 33999999986532
Q ss_pred CCCCcceEEeccccccCCC-----hHHHHHHHHHhccCCcEEEEEEe
Q 019957 234 ASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.+++||+|+++--++.-.+ ...++++..++|||||.+++...
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3689999999876554433 36789999999999999988654
No 82
>PTZ00146 fibrillarin; Provisional
Probab=99.56 E-value=2.7e-13 Score=120.31 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=97.6
Q ss_pred hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC---CCCCCC
Q 019957 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF 237 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~ 237 (333)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.+++...+.... ..++.++.+|+... ....++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 34567889999999999999999987 3456899999998766544444332 45788999998542 222458
Q ss_pred cceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957 238 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 316 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~ 316 (333)
||+|++... . +|. ..++.++.++|||||.|++......-... +.....|+ +++ ++|+++||+.
T Consensus 203 vDvV~~Dva--~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g-----------~~pe~~f~-~ev-~~L~~~GF~~ 266 (293)
T PTZ00146 203 VDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFIISIKANCIDST-----------AKPEVVFA-SEV-QKLKKEGLKP 266 (293)
T ss_pred CCEEEEeCC--C-cchHHHHHHHHHHhccCCCEEEEEEeccccccC-----------CCHHHHHH-HHH-HHHHHcCCce
Confidence 999998764 2 343 45667899999999999995322210000 00111122 344 8899999999
Q ss_pred EEEEEeCeE
Q 019957 317 YTSKVQQSF 325 (333)
Q Consensus 317 v~~~~~~~~ 325 (333)
++......|
T Consensus 267 ~e~v~L~Py 275 (293)
T PTZ00146 267 KEQLTLEPF 275 (293)
T ss_pred EEEEecCCc
Confidence 887765555
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.56 E-value=2e-13 Score=121.06 Aligned_cols=139 Identities=20% Similarity=0.275 Sum_probs=105.8
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
.+..+.+.+.. .+.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++...+ ..++.++.+|+.+ ++
T Consensus 76 l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 76 LVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhc-cC
Confidence 34444554442 3468999999999999999998777799999999999999999988776 3479999999866 44
Q ss_pred CCCCcceEEeccccc------cCC------C--------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957 234 ASGFVDAVHAGAALH------CWP------S--------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 287 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~------h~~------d--------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 287 (333)
.+++||+|+++-... ++. + ...+++++.++|+|||.+++...
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------ 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------ 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------
Confidence 578999999853221 111 0 13568899999999999988541
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957 288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~ 320 (333)
+...+++.++++++||+.++..
T Consensus 219 -----------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678999999999887753
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.56 E-value=5.4e-14 Score=129.65 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=95.4
Q ss_pred HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCC
Q 019957 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFAS 235 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~ 235 (333)
+...+....+..+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...+ ..++.++++|+..+ .+++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCCC
Confidence 344444455669999999999999999999988899999999999999999988877 56899999999654 4678
Q ss_pred CCcceEEeccccccCCCh------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 236 GFVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
+++|.|++.....+.... ..+++++.|+|+|||.+.+.|-..
T Consensus 191 ~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 191 NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 999999975433322211 578999999999999999988654
No 85
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=1.1e-13 Score=124.06 Aligned_cols=136 Identities=21% Similarity=0.317 Sum_probs=104.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||+|||+|-++...++.| ..+|+|+|+++.+++.|++++..+++ ..++.+. ...+.+ .++||+|+++
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~~~~~--~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LSEDLV--EGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCTC--CS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Eecccc--cccCCEEEEC
Confidence 457799999999999999999987 45899999999999999999999986 4455442 222332 4899999986
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 324 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~ 324 (333)
-..+- ...++..+.++|+|||.|+++-.... ..+++.+.+++ ||++++....+.
T Consensus 233 I~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------------~~~~v~~a~~~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 233 ILADV---LLELAPDIASLLKPGGYLILSGILEE----------------------QEDEVIEAYKQ-GFELVEEREEGE 286 (295)
T ss_dssp S-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHT-TEEEEEEEEETT
T ss_pred CCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------------HHHHHHHHHHC-CCEEEEEEEECC
Confidence 54322 24567778899999999999876542 24678888877 999999999999
Q ss_pred EEEEEEeCC
Q 019957 325 FIMFAAQKP 333 (333)
Q Consensus 325 ~~~~~a~kp 333 (333)
|..+.++|.
T Consensus 287 W~~l~~~Kk 295 (295)
T PF06325_consen 287 WVALVFKKK 295 (295)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEEeC
Confidence 999998874
No 86
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.56 E-value=2.5e-13 Score=125.85 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
.-.+.+.+.++...+++|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++++.++.....++.++.+|....
T Consensus 215 ~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~- 293 (378)
T PRK15001 215 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG- 293 (378)
T ss_pred hHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-
Confidence 3346677777765567999999999999999999998889999999999999999998776531123688888887542
Q ss_pred CCCCCcceEEeccccccC---CC--hHHHHHHHHHhccCCcEEEEEE
Q 019957 233 FASGFVDAVHAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~---~d--~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+..++||+|+++-.+|.. .+ ..++++++.++|+|||.|+++.
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 234689999997665432 22 2478999999999999999985
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=99.56 E-value=3.8e-13 Score=117.13 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=110.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (333)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (333)
..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+ .++.++.+|+... +.+++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEEE
Confidence 4456799999999999999988864 3589999999999999999887654 2578888998653 34678999999
Q ss_pred ccccccCCC---------------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-h-----hhcc
Q 019957 244 GAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-R-----ILQN 296 (333)
Q Consensus 244 ~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~-----~~~~ 296 (333)
+--..+... ...+++++.++|||||++++....... .. .....+.. . ...+
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~-~~-~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG-VE-RTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC-HH-HHHHHHHHCCCCeEEEEee
Confidence 743221111 245788899999999999986544311 11 11222211 0 0123
Q ss_pred CCCCCHHH--HHHHHHhCCCcEEEEEEeCeEEEEEEeCC
Q 019957 297 YNYLTEEE--IEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333 (333)
Q Consensus 297 ~~~~t~~~--l~~ll~~aGf~~v~~~~~~~~~~~~a~kp 333 (333)
...|.... ...++++.||.... .+....+++.|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 223 (223)
T PRK14967 186 WIPFGPVLRARAAWLERRGLLPPG-QREEELVVIRADKP 223 (223)
T ss_pred ccCccHHHHHHHHHHHHcCCCCCC-CceEEEEEEEeecC
Confidence 33344433 44788999998553 55556788899998
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.55 E-value=1.1e-13 Score=119.85 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=92.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
....+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++...+ ..++.++.+|.....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCC
Confidence 446677777778889999999999999999988753 3569999999999999999998876 467999999997654
Q ss_pred CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...++||+|++.....++ ...+.+.|||||++++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 445689999998776655 356788999999998865
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1.7e-13 Score=126.22 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
......+.......++.+|||+|||+|.++..++..+. .++|+|+++.+++.++++++..++ .++.++.+|+.++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l 242 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence 33445555555666788999999999999988777654 999999999999999999988874 4588999999999
Q ss_pred CCCCCCcceEEeccccc-------c-CCC-hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957 232 PFASGFVDAVHAGAALH-------C-WPS-PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 302 (333)
Q Consensus 232 p~~~~~fD~V~~~~vl~-------h-~~d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (333)
|+.+++||+|++.--.. + ..+ ...+++++.++|||||++++..+..
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------------- 297 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------------- 297 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------------
Confidence 88788999999953211 1 111 3678999999999999999877543
Q ss_pred HHHHHHHHhCCCcEEEE
Q 019957 303 EEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 303 ~~l~~ll~~aGf~~v~~ 319 (333)
.++..+++++|| ++..
T Consensus 298 ~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKR 313 (329)
T ss_pred CCHHHHHhhcCc-chhe
Confidence 255678999999 6654
No 90
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.55 E-value=5.7e-13 Score=122.60 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=94.1
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
-.+.+.+.+.....++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++.+++ ...++.+|....
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~-- 257 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD-- 257 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--
Confidence 34566666665556689999999999999999998878999999999999999999888753 356777777542
Q ss_pred CCCCcceEEeccccccCC-----ChHHHHHHHHHhccCCcEEEEEEe
Q 019957 234 ASGFVDAVHAGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.+++||+|+++-.+|+.. ....+++++.++|||||.++++..
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 257899999998887632 346889999999999999998764
No 91
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.54 E-value=1.8e-13 Score=123.68 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=100.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++...+++ ...+.+...+... ..+++||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~--~~~~~~~~~~~~~--~~~~~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV--SDRLQVKLIYLEQ--PIEGKADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeccccc--ccCCCceEEEEe
Confidence 357899999999999998888765 45899999999999999999887764 4456666665333 235789999997
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 324 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~ 324 (333)
...++ ...++.++.++|||||.++++..... ..+++.+.+++. |++++....+.
T Consensus 233 ~~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~----------------------~~~~v~~~~~~~-f~~~~~~~~~~ 286 (288)
T TIGR00406 233 ILAEV---IKELYPQFSRLVKPGGWLILSGILET----------------------QAQSVCDAYEQG-FTVVEIRQREE 286 (288)
T ss_pred cCHHH---HHHHHHHHHHHcCCCcEEEEEeCcHh----------------------HHHHHHHHHHcc-CceeeEeccCC
Confidence 65443 35788999999999999999774321 235777888776 98888666554
Q ss_pred E
Q 019957 325 F 325 (333)
Q Consensus 325 ~ 325 (333)
|
T Consensus 287 W 287 (288)
T TIGR00406 287 W 287 (288)
T ss_pred C
Confidence 4
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.54 E-value=6.7e-13 Score=113.27 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=90.7
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~ 234 (333)
..+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+ ..++.++.+|+.+ ++..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhhC
Confidence 45677777677889999999999999999877666799999999999999999988766 4578999999854 2222
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
...+|.++... ..+...+++++.++|+|||.+++..+.
T Consensus 107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 23467766532 235578899999999999999998754
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.53 E-value=1.1e-12 Score=118.05 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=99.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...++ ..++.++.+|+.+. +++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~~-~~~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFAA-LPGRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhc-cCCCCccEEEEC
Confidence 345689999999999999999988778999999999999999999988764 45799999998542 235689999985
Q ss_pred c------ccccC-----CCh--------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCC
Q 019957 245 A------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 299 (333)
Q Consensus 245 ~------vl~h~-----~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (333)
- .+.++ .+| ..+++++.++|+|||++++....
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----------------------- 253 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----------------------- 253 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------------
Confidence 1 11111 112 45688889999999999886521
Q ss_pred CCHHHHHHHHHhCCCcEEEEEE
Q 019957 300 LTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 300 ~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
+.+.++.++.++||.......
T Consensus 254 -~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 254 -SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred -CHHHHHHHHHhCCCceeeecC
Confidence 335788888889987766433
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=9.2e-13 Score=118.85 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=97.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec---
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG--- 244 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~--- 244 (333)
.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...++ ..++.++.+|+.+ ++.+.+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 689999999999999999988778999999999999999999887764 3459999999865 3334589999985
Q ss_pred ----------cccccCC------------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957 245 ----------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 302 (333)
Q Consensus 245 ----------~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (333)
.++.|-+ ....+++++.++|+|||++++..... ..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------------------q~ 249 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------------------QQ 249 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------------HH
Confidence 2333332 23467888999999999998866322 23
Q ss_pred HHHHHHHH-hCCCcEEEE
Q 019957 303 EEIEDLCT-SCGLTNYTS 319 (333)
Q Consensus 303 ~~l~~ll~-~aGf~~v~~ 319 (333)
+.+.+++. ..||..++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHhcCCCceeEE
Confidence 46677777 468876654
No 95
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=1.2e-13 Score=107.75 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=88.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEec
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 244 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 244 (333)
|.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.++.++...++ ..+++++++|+.+.. +.+++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL--DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT--TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC--CceEEEEECchhhchhhccCceeEEEEEC
Confidence 4589999999999999999998 66999999999999999999988764 568999999997765 678999999997
Q ss_pred cccccCC--------ChHHHHHHHHHhccCCcEEEEEEec
Q 019957 245 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 245 ~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
-...... .-..+++++.++|||||.+++.+++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6654321 1247899999999999999998763
No 96
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=3.2e-13 Score=116.18 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=79.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CCC
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS 235 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~ 235 (333)
.++.+|||||||+|.++..+++.. +...|+|+|+++ + .+ .+++.++++|+.+.+ +.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~---~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP---IVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC---CCCcEEEecCCCChHHHHHHHHHhCC
Confidence 457799999999999999998874 446899999988 1 01 457899999998853 567
Q ss_pred CCcceEEeccccccCCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 236 GFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
++||+|++..+.++..++ ..+|+++.++|||||.|++.++..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 899999998776665443 357899999999999999977543
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=1.5e-12 Score=118.33 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=96.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc--
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-- 245 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-- 245 (333)
.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++ ..++.++.+|+.+. +++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~~-l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLFAA-LPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchhhh-CCCCCccEEEECCCC
Confidence 689999999999999999988778999999999999999999988764 45799999998542 2356899999861
Q ss_pred ----c-------cccCCC------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957 246 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 302 (333)
Q Consensus 246 ----v-------l~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (333)
. +.|.+. ...+++++.++|+|||.+++.... +.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------------~~ 267 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------------SR 267 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------CH
Confidence 1 112221 146789999999999999985421 23
Q ss_pred HHHHHHHHhCCCcEEEE
Q 019957 303 EEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 303 ~~l~~ll~~aGf~~v~~ 319 (333)
+++..++.+.||.....
T Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEF 284 (307)
T ss_pred HHHHHHHhhCCCEEEEe
Confidence 45777788888876653
No 98
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.50 E-value=7.1e-13 Score=120.48 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCCCC----Ccc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FVD 239 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~fD 239 (333)
++.+|||+|||+|..+..+.+..+ ..+|+++|+|+.|++.+++++..... ..++.++++|+.+ +++... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p--~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP--QLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC--CceEEEEEEcccchhhhhcccccCCeE
Confidence 457899999999999999998864 35899999999999999998765321 3356778999876 333322 233
Q ss_pred eEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEE
Q 019957 240 AVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 240 ~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
++++..+++|++. ...+|++++++|+|||.|++..
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4555567888763 3578999999999999998743
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=8.5e-13 Score=114.08 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
......+.+.+...++.+|||+|||+|.++..+++... +++++|+++.+++.+++++...+ ..++.++.+|....
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~ 138 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccC
Confidence 34456667777777888999999999999988887754 89999999999999999998876 45699999998653
Q ss_pred CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
....++||+|++...++++ .+.+.+.|+|||++++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998877665 3567889999999998765
No 100
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.47 E-value=4.1e-13 Score=111.84 Aligned_cols=114 Identities=27% Similarity=0.373 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcccC--CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-
Q 019957 152 DEEFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV- 228 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~- 228 (333)
.++.+..++++.... ..-|||||||+|..+..+...+. ..+|+|+|+.|++.|.+.. -.-+++.+|+
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG 103 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMG 103 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecC
Confidence 334455555555443 66899999999999999999875 8999999999999999732 1235777888
Q ss_pred CCCCCCCCCcceEEeccccccCC-------ChH----HHHHHHHHhccCCcEEEEEEe
Q 019957 229 CRLPFASGFVDAVHAGAALHCWP-------SPS----NAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+.+||..++||.+++...++++- +|. .++..++.+|++|++.++...
T Consensus 104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 104 EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 66899999999999988776652 333 567889999999999998764
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.46 E-value=6.5e-12 Score=116.66 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-CCCCcceEEec
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~ 244 (333)
++.+|||+|||+|.++..++...+..+++++|+|+.+++.+++++...+ .++.++++|+.+..+ ..++||+|+++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhccccccCCCccEEEEC
Confidence 3569999999999999999988777799999999999999999988754 379999999865432 24589999995
Q ss_pred cccc-----cC----------------CC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCC
Q 019957 245 AALH-----CW----------------PS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 299 (333)
Q Consensus 245 ~vl~-----h~----------------~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (333)
--.- +. .| ...+++.+.+.|+|||.+++....
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----------------------
Confidence 3210 00 01 125667777899999998875421
Q ss_pred CCHHHHHHHHHhCCCcEEEE
Q 019957 300 LTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 300 ~t~~~l~~ll~~aGf~~v~~ 319 (333)
-..+.+.+++++.||..+++
T Consensus 384 ~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 384 DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred cHHHHHHHHHHHCCCcEEEE
Confidence 12468889999999987664
No 102
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.46 E-value=4.6e-13 Score=112.89 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
...+.||.|+|.|+.+..+.... ..+|..+|+.+..++.|++.+...+ .....+++..++++....++||+|++-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 35689999999999998776553 3499999999999999998766532 3446788888888765567999999999
Q ss_pred ccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeC
Q 019957 246 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 323 (333)
Q Consensus 246 vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~ 323 (333)
++.|++|. ..+|+.+...|+|+|++++-+........ . + ......-..+.+.++++++++|+++++...+.
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~-~----~--D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD-E----F--DEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE-E----E--ETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc-c----c--CCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 99999876 48999999999999999998876542211 0 1 11123334578999999999999999987766
Q ss_pred eE
Q 019957 324 SF 325 (333)
Q Consensus 324 ~~ 325 (333)
.|
T Consensus 204 ~f 205 (218)
T PF05891_consen 204 GF 205 (218)
T ss_dssp T-
T ss_pred CC
Confidence 65
No 103
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.1e-12 Score=110.85 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=102.2
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
.-..+|...+...++.+|||.|.|+|.++..|+.. ++..+|+.+|+.++.++.|+++++..++ ..++++..+|+.+.
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~ 158 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREG 158 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEecccccc
Confidence 34467888888899999999999999999999974 6778999999999999999999999886 56699999999876
Q ss_pred CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
-+.+ .||+|+.. +++|..++..+.++|||||.+++..|+.
T Consensus 159 ~~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 159 IDEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 5544 89999864 5899999999999999999999988764
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=8.4e-12 Score=112.18 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
..++.+...+...++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++. .+. ..++.++.+|+...
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~--~~~i~~~~~d~~~~- 170 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL--GARVEFLQGDWFEP- 170 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC--CCcEEEEEccccCc-
Confidence 33444444444556779999999999999999998877899999999999999999877 221 45799999998552
Q ss_pred CCCCCcceEEecccc------c--------cC------------CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhh
Q 019957 233 FASGFVDAVHAGAAL------H--------CW------------PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~ 286 (333)
+.+++||+|+++--. + |- .....+++++.++|+|||.+++....
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------- 240 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------- 240 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc----------
Confidence 235789999985211 1 11 11246788888999999999984411
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 287 RVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 287 ~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
...+++..++++.||..++.
T Consensus 241 -------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 -------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -------------hHHHHHHHHHHhCCCceeEE
Confidence 12356889999999987664
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=99.45 E-value=3.3e-12 Score=112.16 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=104.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (333)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (333)
.+..+......+. +......+|||+|||+|.++..+....+..+++|+|+++.+++.++++ .+++.++.+
T Consensus 47 ~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~~ 116 (279)
T PHA03411 47 AFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWITS 116 (279)
T ss_pred eEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEEC
Confidence 3455666654332 223345799999999999998887765456999999999999999875 346889999
Q ss_pred cCCCCCCCCCCcceEEeccccccCCCh--------------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhh
Q 019957 227 DVCRLPFASGFVDAVHAGAALHCWPSP--------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286 (333)
Q Consensus 227 d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~ 286 (333)
|+..+.. +++||+|+++-.+.|.+.. .++++....+|+|+|.+++.-...+ .
T Consensus 117 D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-----~-- 188 (279)
T PHA03411 117 DVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-----Y-- 188 (279)
T ss_pred chhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-----c--
Confidence 9987653 4689999998888775321 3456777889999997777632211 1
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957 287 RVLRERILQNYNYLTEEEIEDLCTSCGLTN 316 (333)
Q Consensus 287 ~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~ 316 (333)
...-++.++.+.+++++||..
T Consensus 189 ---------y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 189 ---------YDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ---------ccccCCHHHHHHHHHhcCcEe
Confidence 112368899999999999964
No 106
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.45 E-value=2e-12 Score=111.58 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
...++||||+|.|..+..++..+. +|++.|.|+.|....+++ +.+++. ..+..-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl~--~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVLD--IDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEEe--hhhhhccCCceEEEeehh
Confidence 456899999999999999998876 899999999997666542 344443 222332356899999999
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhh-HHHHHhhhccCCCCC----HHHHHHHHHhCCCcEEEEE
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-RVLRERILQNYNYLT----EEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t----~~~l~~ll~~aGf~~v~~~ 320 (333)
+|....+|..+|+.+++.|+|+|+++++...+..+....-. +.......-....-+ .+.+.+.++.+||+++. +
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~-~ 238 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVER-W 238 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE-E
Confidence 99999999999999999999999999987655433332211 010000000001112 23455889999999988 5
Q ss_pred EeCeE
Q 019957 321 VQQSF 325 (333)
Q Consensus 321 ~~~~~ 325 (333)
..-+|
T Consensus 239 tr~PY 243 (265)
T PF05219_consen 239 TRLPY 243 (265)
T ss_pred eccCc
Confidence 55444
No 107
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.45 E-value=3.5e-12 Score=112.49 Aligned_cols=140 Identities=22% Similarity=0.280 Sum_probs=104.3
Q ss_pred HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (333)
+.......+..+|||||+|+|.++..+.+++|+.+++.+|. |..++.+++ ..++.++.+|+. -+++.
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--
Confidence 33444445567899999999999999999999999999997 888888887 468999999997 45544
Q ss_pred cceEEeccccccCCChH--HHHHHHHHhccCC--cEEEEEEecccCCCcchhhH---HHHH---hhhccCCCCCHHHHHH
Q 019957 238 VDAVHAGAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRYTSSTSLTGR---VLRE---RILQNYNYLTEEEIED 307 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~~--~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~t~~~l~~ 307 (333)
+|+|++.++||+++|.. .+|+++++.|+|| |+|+|.++..+......... .+.. -......-+|.+||+.
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ 238 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEA 238 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence 99999999999998764 7899999999999 99999998865333322122 1111 1112266788999998
Q ss_pred HHH
Q 019957 308 LCT 310 (333)
Q Consensus 308 ll~ 310 (333)
+++
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.2e-11 Score=109.31 Aligned_cols=120 Identities=16% Similarity=0.266 Sum_probs=97.2
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.+.-.+.+.+.++...+.+|||+|||.|.++..+++..|..+++-+|+|..+++.+++++..+++ .+..++..|..+
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~ 219 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYE 219 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccc
Confidence 34445778888887767799999999999999999999999999999999999999999998873 343566666644
Q ss_pred CCCCCCCcceEEeccccccCCCh-----HHHHHHHHHhccCCcEEEEEEe
Q 019957 231 LPFASGFVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
-- .+ +||+|+|+--+|-=.+- .+++++..+.|++||.|.++..
T Consensus 220 ~v-~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 220 PV-EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc-cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 32 23 99999998777643222 3789999999999999999774
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.2e-12 Score=108.37 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
....++.+.+...++.+|||||||+|+.+..+++... +|+.+|..+...+.|+++++..| ..|+.++++|...-=
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~ 133 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCC
Confidence 4567888899999999999999999999999999865 99999999999999999999988 667999999996532
Q ss_pred CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
-+...||.|+.......+|++ +.+.||+||++++-.-
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 235789999999988877644 5677999999999765
No 110
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=4.9e-12 Score=109.51 Aligned_cols=138 Identities=13% Similarity=0.197 Sum_probs=109.4
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA 234 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~ 234 (333)
++..+......++|||+|||+|..+..++++.+..+++|+|+.+.+.+.|+++++.+++ ..++.++++|+.++. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--EERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc--hhceeEehhhHHHhhhccc
Confidence 34455555557899999999999999999997678999999999999999999998886 889999999998764 33
Q ss_pred CCCcceEEeccccccC------------------CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhcc
Q 019957 235 SGFVDAVHAGAALHCW------------------PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQN 296 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 296 (333)
..+||+|+|+=-..-. .+....++.+.++|||||.+.++-+..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e------------------- 173 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE------------------- 173 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------------
Confidence 4579999996332211 123577899999999999998866422
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEE
Q 019957 297 YNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 297 ~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
...++.+++.+.+|...+.
T Consensus 174 ----rl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 174 ----RLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred ----HHHHHHHHHHhcCCCceEE
Confidence 1257889999999987664
No 111
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.43 E-value=6.6e-12 Score=108.19 Aligned_cols=133 Identities=13% Similarity=0.134 Sum_probs=99.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------CcCCCCCeEEEEccCCCCCCC-
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPFA- 234 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---------~~~~~~~i~~~~~d~~~lp~~- 234 (333)
.++.+||+.|||.|..+.+|++.|. +|+|+|+|+.+++.+.+..... ......+++++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 3567999999999999999999987 8999999999999886632100 000135799999999998632
Q ss_pred --CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957 235 --SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 310 (333)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~ 310 (333)
.+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.+...... ....-...+.++++.++.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~------------~~GPPf~v~~~e~~~lf~ 187 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK------------SQTPPYSVTQAELIKNFS 187 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC------------CCCCCCcCCHHHHHHhcc
Confidence 2589999999999999644 478999999999999998887643210 001122356788888885
Q ss_pred h
Q 019957 311 S 311 (333)
Q Consensus 311 ~ 311 (333)
.
T Consensus 188 ~ 188 (226)
T PRK13256 188 A 188 (226)
T ss_pred C
Confidence 4
No 112
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.42 E-value=7.7e-12 Score=105.03 Aligned_cols=161 Identities=19% Similarity=0.277 Sum_probs=119.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCe-EEEEccCCCC-
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRL- 231 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~l- 231 (333)
+.+.+.+++... +.+|||||+|||..+.++++..|..+..-.|+++..+...+......++ +++ .-+..|+...
T Consensus 14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPP 89 (204)
T ss_pred HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCC
Confidence 456667776543 2269999999999999999999988999999999887777777776653 222 2234455443
Q ss_pred -CC------CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCC-----cchhhHHHHHhhhccC
Q 019957 232 -PF------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS-----TSLTGRVLRERILQNY 297 (333)
Q Consensus 232 -p~------~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~ 297 (333)
+. ..++||+|++.+++|-.+-. ..+++.+.++|++||.|++..|...... +..+...++.+. ..+
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd-p~~ 168 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD-PEW 168 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC-CCc
Confidence 22 24689999999999887644 5789999999999999999988765321 222333333333 457
Q ss_pred CCCCHHHHHHHHHhCCCcEEEE
Q 019957 298 NYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 298 ~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
...+.+++..+.+++|++.++.
T Consensus 169 GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 169 GIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred CccCHHHHHHHHHHCCCccCcc
Confidence 8889999999999999987764
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.42 E-value=1.4e-12 Score=111.58 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
......+.+.+...++.+|||||||+|+++..++.. ++...|+++|+++..++.|++++...+ ..++.++.+|...
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhh
Confidence 345577888888889999999999999999999987 445579999999999999999999887 5699999999865
Q ss_pred CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.-.....||.|++......++ ..+.+.||+||++++-.-
T Consensus 135 g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 433456899999998877553 336777999999998654
No 114
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.41 E-value=2.4e-12 Score=107.46 Aligned_cols=158 Identities=18% Similarity=0.331 Sum_probs=102.3
Q ss_pred cchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccC-CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 019957 129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (333)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~ 207 (333)
+.+-..|+.++++..... | ..-++.+.+++...+ ...|-|+|||.+.++..+.... .|.-+|+-..
T Consensus 38 P~~F~~YH~Gfr~Qv~~W--P--~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~---~V~SfDLva~------ 104 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKKW--P--VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKH---KVHSFDLVAP------ 104 (219)
T ss_dssp HHHHHHHHHHHHHHHCTS--S--S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S------
T ss_pred HHHHHHHHHHHHHHHhcC--C--CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCc---eEEEeeccCC------
Confidence 444456888888766542 2 233455555665444 4689999999999997765332 7999998431
Q ss_pred HHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 287 (333)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 287 (333)
+-.+..+|+..+|++++++|++++.-.|.- .|...+|+|+.|+||+||.|.|.+....
T Consensus 105 ------------n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------- 162 (219)
T PF05148_consen 105 ------------NPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR--------- 162 (219)
T ss_dssp ------------STTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------
T ss_pred ------------CCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc---------
Confidence 224778999999999999999998887765 5788899999999999999999996543
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE-eCeEEEEEEeC
Q 019957 288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV-QQSFIMFAAQK 332 (333)
Q Consensus 288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~-~~~~~~~~a~k 332 (333)
+-+.+.+.+.+++.||+...... +.-|+++..+|
T Consensus 163 -----------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -----------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp ------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -----------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 22567889999999999988653 45556666554
No 115
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.40 E-value=1.2e-11 Score=108.00 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=123.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcc
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 239 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 239 (333)
..+.+||||.||.|.+...+....+. .++...|.|+..++..++.+++.|+ ..-+.|.++|+.+.. -.+-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence 45678999999999998888888765 6899999999999999999999995 445599999987632 2244679
Q ss_pred eEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh-------ccCCCCCHHHHHHHH
Q 019957 240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL-------QNYNYLTEEEIEDLC 309 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~t~~~l~~ll 309 (333)
+++.++++|.++|-. ..|+-+.+.+.|||+++.+.- +++|. .+.+..... -.+...|..|+.+++
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ----PwHPQ-le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv 286 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ----PWHPQ-LEMIARVLTSHRDGKAWVMRRRSQAEMDQLV 286 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC----CCCcc-hHHHHHHHhcccCCCceEEEecCHHHHHHHH
Confidence 999999999999854 568899999999999998652 12222 222222222 234578999999999
Q ss_pred HhCCCcEEEE--EEeCeEEEEEEeC
Q 019957 310 TSCGLTNYTS--KVQQSFIMFAAQK 332 (333)
Q Consensus 310 ~~aGf~~v~~--~~~~~~~~~~a~k 332 (333)
+++||+.+.. ...+.|.+..|+|
T Consensus 287 ~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 287 EAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHcCCchhhheeccCCceEEEeecC
Confidence 9999987664 4567778777765
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.40 E-value=5e-12 Score=120.44 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=99.3
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.+.....+...+.+.++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++++..|+ ...+.+..+|...
T Consensus 223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~ 300 (426)
T TIGR00563 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRG 300 (426)
T ss_pred ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccc
Confidence 34445666777788888999999999999999999875566999999999999999999998774 2234446677665
Q ss_pred CCC--CCCCcceEEe------ccccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecccC
Q 019957 231 LPF--ASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT 279 (333)
Q Consensus 231 lp~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~ 279 (333)
.++ ..++||.|++ .+++.+.++ ..++|+++.++|||||.++++|.....
T Consensus 301 ~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 301 PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 443 4678999985 356666555 257899999999999999999876643
No 117
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.40 E-value=1.3e-11 Score=107.71 Aligned_cols=140 Identities=19% Similarity=0.296 Sum_probs=108.7
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (333)
....+.+|...+...||.+|||.|.|+|.++..|++. +|.++|+.+|+.++.++.|+++++..++ ..++.+...|+.
T Consensus 25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVC 102 (247)
T ss_dssp -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GG
T ss_pred eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEeccee
Confidence 3445578888889999999999999999999999975 7788999999999999999999999986 678999999996
Q ss_pred CCCCC---CCCcceEEeccccccCCChHHHHHHHHHhc-cCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHH
Q 019957 230 RLPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 305 (333)
Q Consensus 230 ~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l 305 (333)
+..|. +..+|.|++. +++|..++..+.++| |+||++.+-.|... . ....
T Consensus 103 ~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------Q-------------v~~~ 155 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE---------Q-------------VQKT 155 (247)
T ss_dssp CG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------H-------------HHHH
T ss_pred cccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH---------H-------------HHHH
Confidence 53332 3679998864 589999999999999 89999999876542 1 1345
Q ss_pred HHHHHhCCCcEEEE
Q 019957 306 EDLCTSCGLTNYTS 319 (333)
Q Consensus 306 ~~ll~~aGf~~v~~ 319 (333)
...|++.||..++.
T Consensus 156 ~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 156 VEALREHGFTDIET 169 (247)
T ss_dssp HHHHHHTTEEEEEE
T ss_pred HHHHHHCCCeeeEE
Confidence 57778899987764
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=1.5e-11 Score=119.10 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc-
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 245 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 245 (333)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++ ..++.++.+|+... +..++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~-~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFEN-IEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhh-CcCCCccEEEECCC
Confidence 4689999999999999998887778999999999999999999887764 45789999997542 2356899999842
Q ss_pred -------------ccccCCC------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957 246 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 300 (333)
Q Consensus 246 -------------vl~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (333)
++.|-+. ...+++.+.++|+|||.+++.... -
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-----------------------~ 272 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-----------------------K 272 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-----------------------c
Confidence 1222111 134677888999999999875311 1
Q ss_pred CHHHHHHHHHhCCCcEEEE
Q 019957 301 TEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 301 t~~~l~~ll~~aGf~~v~~ 319 (333)
..+.+..++.+.||..+++
T Consensus 273 q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 273 QEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred hHHHHHHHHHhcCCCceEE
Confidence 3457888999999987654
No 119
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.39 E-value=9e-12 Score=107.46 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=110.0
Q ss_pred HHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-c
Q 019957 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-D 213 (333)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~ 213 (333)
++..|++.-.......+...+..+.+.+...++.+||..|||.|..+..|+++|. +|+|+|+|+.+++.+.+.... .
T Consensus 6 W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~ 83 (218)
T PF05724_consen 6 WEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEP 83 (218)
T ss_dssp HHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEE
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCC
Confidence 4445554432222222233333333335556677999999999999999999987 999999999999998543221 0
Q ss_pred Cc--------CCCCCeEEEEccCCCCCCCC-CCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957 214 NT--------ILTSNLALVRADVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSST 282 (333)
Q Consensus 214 ~~--------~~~~~i~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 282 (333)
.. ....+++++++|+..++... ++||+|+-...|.-++. -.+..+.+.++|+|||.+++.+.......
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~- 162 (218)
T PF05724_consen 84 TVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE- 162 (218)
T ss_dssp ECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC-
T ss_pred CcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC-
Confidence 00 01346899999999876433 58999999888877753 35789999999999999666554422110
Q ss_pred chhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957 283 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~ 320 (333)
..+.-...+++++++++. .+|++....
T Consensus 163 ----------~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 163 ----------MEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp ----------SSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred ----------CCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 002223468899999998 888876643
No 120
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=7.2e-12 Score=119.58 Aligned_cols=124 Identities=18% Similarity=0.278 Sum_probs=99.7
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (333)
.+.....+...+.+.++.+|||+|||+|..+..+++.. ...+++++|+++.+++.++++++..| ..++.++.+|+.
T Consensus 237 qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~ 313 (434)
T PRK14901 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSR 313 (434)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChh
Confidence 34444566667777788999999999999999988873 34589999999999999999999887 457999999998
Q ss_pred CCC----CCCCCcceEEec------cccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957 230 RLP----FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 230 ~lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
.++ +..++||.|++. +++.+-++ ..++|.++.++|||||+|+.+|...
T Consensus 314 ~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred hcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 765 345789999963 45665554 3477999999999999999988544
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=7.7e-12 Score=113.82 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=89.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
....+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|+++++..+ ..++.++.+|+...+
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcc
Confidence 445566666666788999999999999999988753 2479999999999999999988876 457899999987665
Q ss_pred CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...+.||+|++...++++ ...+.+.|+|||++++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 445689999998766654 234678999999988854
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.37 E-value=3.9e-11 Score=106.12 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=96.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CC-CCCCcceEEec
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG 244 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~~ 244 (333)
+.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++..++ +.++.+|+.+. +. ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeechhhcchhcCCCEeEEEEC
Confidence 458999999999999999987766799999999999999999887643 47888998652 21 13579999986
Q ss_pred ccc------c--------cCC--------C----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCC
Q 019957 245 AAL------H--------CWP--------S----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN 298 (333)
Q Consensus 245 ~vl------~--------h~~--------d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (333)
--. . |-+ | ...+++.+.++|||||.+++.....
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--------------------- 219 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--------------------- 219 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------------------
Confidence 321 1 110 1 1366777889999999999865321
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEEeCeEEE
Q 019957 299 YLTEEEIEDLCTSCGLTNYTSKVQQSFIM 327 (333)
Q Consensus 299 ~~t~~~l~~ll~~aGf~~v~~~~~~~~~~ 327 (333)
..+++..++++.||+........-|.+
T Consensus 220 --~~~~v~~~l~~~g~~~~~~~~~~~~~~ 246 (251)
T TIGR03704 220 --QAPLAVEAFARAGLIARVASSEELYAT 246 (251)
T ss_pred --hHHHHHHHHHHCCCCceeeEcccccce
Confidence 235788899999998766555444533
No 123
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.37 E-value=7.7e-12 Score=94.02 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=85.0
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-CCCCcceEEecccc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL 247 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl 247 (333)
+|||+|||.|.++..+.+ ....+++++|+++..+..+++.....+ ..++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999998888 345699999999999998885433322 5678999999987653 46789999999999
Q ss_pred cc-CCChHHHHHHHHHhccCCcEEEEE
Q 019957 248 HC-WPSPSNAVAEISRILRSGGVFVGT 273 (333)
Q Consensus 248 ~h-~~d~~~~l~~~~r~LkpgG~l~i~ 273 (333)
++ ..+...+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99 778889999999999999999876
No 124
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.34 E-value=2.5e-11 Score=103.58 Aligned_cols=156 Identities=19% Similarity=0.272 Sum_probs=111.5
Q ss_pred cchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 019957 129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (333)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~ 207 (333)
+..-..|+.+++........... +.+.+.+... ....|-|+|||.+.++. .. ...|+.+|+-.
T Consensus 146 p~afdlYH~gfr~QV~kWP~nPl----d~ii~~ik~r~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a------- 209 (325)
T KOG3045|consen 146 PTAFDLYHAGFRSQVKKWPENPL----DVIIRKIKRRPKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVA------- 209 (325)
T ss_pred cHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHhCcCceEEEecccchhhhhh--cc---ccceeeeeeec-------
Confidence 33444677777766554332223 3333444333 35689999999998776 22 22799999732
Q ss_pred HHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 287 (333)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 287 (333)
.+-+++.+|+.++|+++++.|++++..+|.- .|...++.|++|+|++||.++|.+....
T Consensus 210 -----------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR--------- 268 (325)
T KOG3045|consen 210 -----------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR--------- 268 (325)
T ss_pred -----------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh---------
Confidence 2456788999999999999999998777654 6788999999999999999999985432
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEe-CeEEEEEEeC
Q 019957 288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQK 332 (333)
Q Consensus 288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~~~~~~~a~k 332 (333)
+-+...+.+.+...||.+...... .-|++|..+|
T Consensus 269 -----------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -----------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -----------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 345567899999999998876543 4446666655
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2.1e-11 Score=116.01 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=98.8
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (333)
.+.....+...+.+.++.+|||+|||+|..+..++... +..+++++|+++.+++.++++++..| ..++.++.+|..
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~ 298 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAE 298 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchh
Confidence 33334455556777788899999999999999888863 35699999999999999999999887 346899999998
Q ss_pred CCC-CCCCCcceEEe------ccccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957 230 RLP-FASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSST 282 (333)
Q Consensus 230 ~lp-~~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 282 (333)
.++ +.+++||.|++ .+++.+-++ ..++|.++.+.|||||.++.+|.......+
T Consensus 299 ~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn 374 (431)
T PRK14903 299 RLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN 374 (431)
T ss_pred hhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence 775 44678999986 233332221 246689999999999999999876543333
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.33 E-value=2.3e-11 Score=108.58 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=93.1
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
.....+.+.++.+|||+|||+|..+..++.... ...|+++|+++.+++.++++++..+ ..++.++..|...++...
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhhc
Confidence 334456667788999999999999998887642 3589999999999999999999887 457899999987766545
Q ss_pred CCcceEEec------cccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecccC
Q 019957 236 GFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT 279 (333)
Q Consensus 236 ~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~ 279 (333)
++||.|++. +++.+-++ ..++|+.+.+.|||||+|+.++-....
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 679999862 23332221 135889999999999999998866543
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=3.1e-11 Score=114.96 Aligned_cols=122 Identities=17% Similarity=0.259 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
+.....+...+.+.++.+|||+|||+|..+..+++..+...++++|+++.+++.++++++..|+ ++.++.+|+..+
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~----~~~~~~~D~~~~ 305 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL----KATVIVGDARDP 305 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEcCcccc
Confidence 3334555667777788999999999999999999887556999999999999999999988763 468999999875
Q ss_pred C--CCCCCcceEEecc------ccccCC------Ch----------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 232 P--FASGFVDAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 232 p--~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
+ +..++||.|++.. ++.+-+ .+ .++|+.+.++|||||.+++++...
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4 3356899999422 222211 11 368999999999999999988644
No 128
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.32 E-value=2.3e-11 Score=103.24 Aligned_cols=106 Identities=19% Similarity=0.330 Sum_probs=84.3
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC--CCCCCcceEEecc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAGA 245 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp--~~~~~fD~V~~~~ 245 (333)
.+||||||.|.++..++...|+..++|+|++...+..+.+++...+ ..|+.++++|+.. ++ ++++++|.|+..+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 8999999999999999999999999999999999999999988887 7899999999977 32 4568999998765
Q ss_pred ccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 246 ALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 246 vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
-=-+.... ..++..+.++|+|||.|.+.|-..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 32211100 378999999999999999988554
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.6e-10 Score=102.20 Aligned_cols=123 Identities=22% Similarity=0.321 Sum_probs=94.7
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc--
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA-- 246 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v-- 246 (333)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|+++...+++ .++.++++|+..-- .++||+|+++--
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~~--~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEPL--RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeeccccc--CCceeEEEeCCCCC
Confidence 79999999999999999999888999999999999999999999873 56677777764421 348999998521
Q ss_pred ---cccC------CCh--------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHH
Q 019957 247 ---LHCW------PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 303 (333)
Q Consensus 247 ---l~h~------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 303 (333)
..+. .+| ..++.++.+.|+|||.+++..-. -..+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-----------------------~q~~ 244 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-----------------------TQGE 244 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-----------------------CcHH
Confidence 1111 122 35678888999999998886521 1357
Q ss_pred HHHHHHHhCC-CcEEEE
Q 019957 304 EIEDLCTSCG-LTNYTS 319 (333)
Q Consensus 304 ~l~~ll~~aG-f~~v~~ 319 (333)
.+.+++.+.| |..+..
T Consensus 245 ~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 245 AVKALFEDTGFFEIVET 261 (280)
T ss_pred HHHHHHHhcCCceEEEE
Confidence 8999999999 665553
No 130
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=104.06 Aligned_cols=104 Identities=24% Similarity=0.267 Sum_probs=75.2
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (333)
.++|+|||+|..++.++..+. +|+|+|+|+.|++.+++.....-. .........+...+--.+++.|+|++...+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhHH
Confidence 899999999988888888866 999999999999999884322110 1111222222223322388999999999988
Q ss_pred cCCChHHHHHHHHHhccCCc-EEEEEEecc
Q 019957 249 CWPSPSNAVAEISRILRSGG-VFVGTTFLR 277 (333)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~ 277 (333)
++ |..++.+++.|+||+.| .+.+-..+.
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 76 56678999999998655 777766654
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=5.8e-11 Score=113.72 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
......+...++.+|||+|||+|..+..+++.. ...+++++|+++.+++.++++++..| ..++.++.+|+..++ +
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCcccccc-c
Confidence 344556666778899999999999988887753 23589999999999999999999887 357899999998765 4
Q ss_pred CCCcceEEec------cccccCC------C----------hHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 235 SGFVDAVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 235 ~~~fD~V~~~------~vl~h~~------d----------~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+++||+|++. +++.+-+ + ...+|.++.++|||||++++.|....
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 5689999962 2222111 1 23589999999999999999997654
No 132
>PRK04457 spermidine synthase; Provisional
Probab=99.28 E-value=3.8e-11 Score=106.81 Aligned_cols=110 Identities=10% Similarity=0.134 Sum_probs=85.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA 243 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (333)
.++.+|||||||+|.++..+.+..+..+++++|+++.+++.|++++...+. .++++++.+|+.+. ....++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 346789999999999999999988888999999999999999998765331 46899999998543 222468999997
Q ss_pred cccc-ccCC---ChHHHHHHHHHhccCCcEEEEEEec
Q 019957 244 GAAL-HCWP---SPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 244 ~~vl-~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
...- ...+ ....+++++.++|+|||++++....
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5311 1111 1268899999999999999996543
No 133
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.27 E-value=5.8e-11 Score=100.64 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=75.7
Q ss_pred hhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------- 232 (333)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------- 232 (333)
+-...++.+|||+|||+|.++..+.+.. +..+++++|+++.+ . ..++.++++|+.+.+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHHHHHH
Confidence 3344678899999999999999888775 44579999999854 1 346888889987642
Q ss_pred -CCCCCcceEEecccc--------ccCC---ChHHHHHHHHHhccCCcEEEEEEe
Q 019957 233 -FASGFVDAVHAGAAL--------HCWP---SPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 233 -~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+.+++||+|++.... +|.. +...+++.+.++|+|||++++..+
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 346689999986432 2211 135789999999999999999653
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=6.4e-11 Score=113.52 Aligned_cols=122 Identities=21% Similarity=0.261 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
+.....+...+...++.+|||+|||+|..+..+++.. +...++++|+++.+++.++++++..|+ .++.++.+|+..
T Consensus 236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~ 312 (444)
T PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARK 312 (444)
T ss_pred ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCccc
Confidence 3333455566777778899999999999999988864 456999999999999999999988873 469999999977
Q ss_pred CC--CCCCCcceEEecc------ccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 231 LP--FASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 231 lp--~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
++ +. ++||+|++.. ++.|-++. ..+|+.+.++|||||.++.++...
T Consensus 313 ~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 313 VHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred ccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 53 33 6899999742 23222211 357899999999999999877544
No 135
>PRK00811 spermidine synthase; Provisional
Probab=99.24 E-value=2.1e-10 Score=103.25 Aligned_cols=109 Identities=15% Similarity=0.242 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC--cCCCCCeEEEEccCCCC-CCCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TILTSNLALVRADVCRL-PFASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~V~ 242 (333)
.+.+||+||||+|..+..+.+.....+|+++|+++.+++.+++.+...+ ....+++.++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999999886445689999999999999999876432 11156899999998653 33467899999
Q ss_pred eccccccCCC----hHHHHHHHHHhccCCcEEEEEE
Q 019957 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+...-.+.+. ...+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8643222221 1567899999999999998754
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=1.7e-10 Score=96.11 Aligned_cols=109 Identities=9% Similarity=0.136 Sum_probs=82.4
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. ..+++++.+|+.++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence 345556666677899999999999999999885 4999999999999999988754 357999999999988777
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHh--ccCCcEEEEEE
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTT 274 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~--LkpgG~l~i~~ 274 (333)
.+||.|+++--+ |+. ...+..+.+. +.++|.+++..
T Consensus 76 ~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 779999886543 332 3344444432 34677777654
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=1.1e-10 Score=102.16 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
...+++..+....++.+|||+|||+|+.+..++.. .+..+++++|+++.+++.|+++++..|+ ..+++++.+|+.+.
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~ 132 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHH
Confidence 33445555555566789999999999988888776 3467999999999999999999999886 57899999999653
Q ss_pred -C-----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 232 -P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+ ...++||+|+....- +.....+..+.+.|+|||++++...
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 2 114689999975431 2235678999999999999887553
No 138
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=4.6e-10 Score=115.55 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=98.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-------------CCCCeEEEEccCCCCCC
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF 233 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-------------~~~~i~~~~~d~~~lp~ 233 (333)
+.+|||+|||+|..+..+++.++..+++|+|+|+.+++.|++++..+++. ...++.++.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 45899999999999999999887779999999999999999998875421 02479999999866431
Q ss_pred C-CCCcceEEecc--------------ccccCC------------------Ch------HHHHHHHHHhccCCcEEEEEE
Q 019957 234 A-SGFVDAVHAGA--------------ALHCWP------------------SP------SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 234 ~-~~~fD~V~~~~--------------vl~h~~------------------d~------~~~l~~~~r~LkpgG~l~i~~ 274 (333)
. ..+||+|+++= |.+|-+ +. .+++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999851 111110 01 467788888999999988755
Q ss_pred ecccCCCcchhhHHHHHhhhccCCCCCHHHHH-HHHHhCCCcEEEEEEeC
Q 019957 275 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIE-DLCTSCGLTNYTSKVQQ 323 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~-~ll~~aGf~~v~~~~~~ 323 (333)
-.. ..+.+. +++++.||+.++.+...
T Consensus 279 G~~-----------------------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 GGR-----------------------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred Ccc-----------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 221 124677 69999999988765543
No 139
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=100.40 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=91.4
Q ss_pred hhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCC
Q 019957 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (333)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 237 (333)
.+.......+||||||.|.++..+++..|+..++|+|+....+..+.+++.+.+ ..|+.+++.|+..+- +++++
T Consensus 43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~s 119 (227)
T COG0220 43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGS 119 (227)
T ss_pred HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCC
Confidence 343333358999999999999999999999999999999999999999999987 349999999997642 34669
Q ss_pred cceEEeccccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957 238 VDAVHAGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
.|-|..++-=-|-... ..+++.+.++|+|||.|.+.|-..
T Consensus 120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 9999876532221111 368999999999999999998554
No 140
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=3.1e-11 Score=101.25 Aligned_cols=146 Identities=21% Similarity=0.269 Sum_probs=112.0
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (333)
...++|||||-|.....+...+ -.+++-+|.|-.|++.++.--.. .-......+|-+.++|.++++|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp-----~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDP-----SIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCC-----ceEEEEEecchhcccccccchhhhhhhhh
Confidence 4589999999999999999987 45899999999999998863211 23456778999999999999999999999
Q ss_pred cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch----hhHHHH--HhhhccCCCCC-HHHHHHHHHhCCCcEEEE
Q 019957 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL----TGRVLR--ERILQNYNYLT-EEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~t-~~~l~~ll~~aGf~~v~~ 319 (333)
+|++.|...-+..++..|||+|.|+-.-..... ...+ ...... +...+|...|+ ..++-.+|.++||....+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT-LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT-LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhcccc-HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 999999999999999999999999886655431 1111 000011 12235555554 478999999999987764
No 141
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.20 E-value=3.6e-10 Score=95.12 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=106.1
Q ss_pred cHHHHHHHHHhhcccC----CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957 151 PDEEFKMAQEYFKSAQ----GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~----~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (333)
....++.+........ ..++|||||=+..+...-.. ..+|+.+|+++. .-.+.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~---~fdvt~IDLns~------------------~~~I~qq 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ------------------HPGILQQ 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC---ceeeEEeecCCC------------------CCCceee
Confidence 3444555555443322 35899999976554433222 237999999762 2336778
Q ss_pred cCCCCCC---CCCCcceEEeccccccCCChH---HHHHHHHHhccCCcE-----EEEEEecccCCCcchhhHHHHHhhhc
Q 019957 227 DVCRLPF---ASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLRYTSSTSLTGRVLRERILQ 295 (333)
Q Consensus 227 d~~~lp~---~~~~fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (333)
|+.+.|. ++++||+|.++.||+.+++|. ..++.+.+.|+|+|. |+++.|..- ..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------------v~ 155 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------------VT 155 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------hh
Confidence 8888765 367999999999999999996 689999999999999 998887542 14
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEEEEeCeEEEEEE
Q 019957 296 NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 330 (333)
Q Consensus 296 ~~~~~t~~~l~~ll~~aGf~~v~~~~~~~~~~~~a 330 (333)
+.+|++.+.|..+++..||..++.........+..
T Consensus 156 NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~ 190 (219)
T PF11968_consen 156 NSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLF 190 (219)
T ss_pred cccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEE
Confidence 57789999999999999999999766655544433
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=3.6e-10 Score=103.12 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHh--cCcCCCCCeEEEEccCCC-CCCCCCCcce
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFVDA 240 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~ 240 (333)
.+.+||+||||+|..+..+.+..+..+++++|+++.+++.|++. +.. .+....++++++.+|+.+ +....++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45699999999999999888876556999999999999999962 111 011115789999999976 3434568999
Q ss_pred EEeccccccCCC------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 241 VHAGAALHCWPS------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 241 V~~~~vl~h~~d------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
|++... ..... ...+++.+++.|+|||++++..... +.... ....+.+.++++||
T Consensus 230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp------~~~~~------------~~~~i~~tL~~af~ 290 (374)
T PRK01581 230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP------ADAPL------------VYWSIGNTIEHAGL 290 (374)
T ss_pred EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh------hhhHH------------HHHHHHHHHHHhCC
Confidence 998632 11100 1468999999999999998864221 10000 01237788999999
Q ss_pred cEEEE
Q 019957 315 TNYTS 319 (333)
Q Consensus 315 ~~v~~ 319 (333)
.+...
T Consensus 291 ~v~~y 295 (374)
T PRK01581 291 TVKSY 295 (374)
T ss_pred ceEEE
Confidence 87654
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.17 E-value=9.2e-10 Score=98.60 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA 243 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (333)
.+.+||+||||+|.++..+.+..+..+++++|+++.+++.+++.+...+ ....++++++.+|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3459999999999999988887655689999999999999999875432 11135788888887442 222468999998
Q ss_pred ccccccCCC----hHHHHHHHHHhccCCcEEEEEE
Q 019957 244 GAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 244 ~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.......+. ...+++.+.+.|+|||++++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654222111 3577899999999999999863
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=8.7e-10 Score=105.66 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL- 231 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l- 231 (333)
...+.+.+.+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++..++ ..++.++.+|+.+.
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l 358 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhh
Confidence 3445566666666778999999999999999998864 99999999999999999988876 45799999998642
Q ss_pred ---CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957 232 ---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL 308 (333)
Q Consensus 232 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l 308 (333)
++.+++||+|++.---.- ....++.+.+ ++|++.++++..... + ..++. .
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~t----------l------------aRDl~-~ 411 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPAT----------L------------ARDAG-V 411 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHH----------h------------hccHH-H
Confidence 344568999987432111 1344555554 689998888762211 0 12333 3
Q ss_pred HHhCCCcEEEEEEeCeE
Q 019957 309 CTSCGLTNYTSKVQQSF 325 (333)
Q Consensus 309 l~~aGf~~v~~~~~~~~ 325 (333)
|.+.||++.+....+-|
T Consensus 412 L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 412 LVEAGYRLKRAGMLDMF 428 (443)
T ss_pred HhhCCcEEEEEEEeccC
Confidence 44689998886554444
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.14 E-value=5.5e-10 Score=112.52 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEec
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 244 (333)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..+++. ..++.++++|+.+.. -..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46799999999999999999875 447999999999999999999988751 147999999986531 114689999984
Q ss_pred c-----------ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957 245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 245 ~-----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG 313 (333)
- +.....+...++..+.++|+|||.+++.+.... ++.+ ...+.++|
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------------------~~~~--~~~~~~~g 672 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------------------FKMD--EEGLAKLG 672 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------------CChh--HHHHHhCC
Confidence 2 111122345678888999999999988653221 1211 67778888
Q ss_pred CcEEEEE
Q 019957 314 LTNYTSK 320 (333)
Q Consensus 314 f~~v~~~ 320 (333)
+.+....
T Consensus 673 ~~~~~i~ 679 (702)
T PRK11783 673 LKAEEIT 679 (702)
T ss_pred CeEEEEe
Confidence 8766543
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.14 E-value=5.4e-10 Score=104.85 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEccCCCCC--C--CCCCcce
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRLP--F--ASGFVDA 240 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~lp--~--~~~~fD~ 240 (333)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..+++ . .++.++.+|+.+.. + ..++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl--~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL--DLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 46799999999999988766544 45899999999999999999998874 3 47899999986642 1 2468999
Q ss_pred EEeccccccC---------CChHHHHHHHHHhccCCcEEEEEEec
Q 019957 241 VHAGAALHCW---------PSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 241 V~~~~vl~h~---------~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
|++.--...- .+-..++..+.++|+|||.|+..+.+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9986321110 11234455678999999999987743
No 147
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.13 E-value=2.7e-10 Score=104.20 Aligned_cols=112 Identities=26% Similarity=0.317 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-------CCCCCeEEEEccCCCCC----CC
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLP----FA 234 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp----~~ 234 (333)
++.+|||+|||-|..+....... -..++|+|++...++.|+++.....- ...-...++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999887666666654 45899999999999999998832110 00124567888775321 23
Q ss_pred --CCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 235 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
...||+|.|...||+.=.. ..+|+.+...|+|||+|+.+++...
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3599999999999986332 4689999999999999999998764
No 148
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.13 E-value=2e-10 Score=96.75 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=108.3
Q ss_pred HhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCC
Q 019957 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGF 237 (333)
Q Consensus 160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~ 237 (333)
+...+.++.+|||...|-|+.+....++| ...|+-+|.+++.++.|.-+-=..++ ....+.++.+|..+. .|.|.+
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccc
Confidence 34456678999999999999999999997 56899999999999887653212222 134689999999764 477999
Q ss_pred cceEEecc---ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 238 VDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 238 fD~V~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
||+|+..- ++-----...+.+|++|+|||||.++-.+-+.. +.++.. --+..+.+.|+++||
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg--------~ryrG~-------d~~~gVa~RLr~vGF 270 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG--------KRYRGL-------DLPKGVAERLRRVGF 270 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC--------cccccC-------ChhHHHHHHHHhcCc
Confidence 99998421 100001125789999999999999988775542 111111 124678899999999
Q ss_pred cEEEEEEeCeEEEEEEeCC
Q 019957 315 TNYTSKVQQSFIMFAAQKP 333 (333)
Q Consensus 315 ~~v~~~~~~~~~~~~a~kp 333 (333)
.+++... ..+.+.|.||
T Consensus 271 ~~v~~~~--~~~gv~A~k~ 287 (287)
T COG2521 271 EVVKKVR--EALGVVAVKP 287 (287)
T ss_pred eeeeeeh--hccceEEecC
Confidence 9877432 2344566665
No 149
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=6.7e-10 Score=94.85 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVC 229 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~ 229 (333)
.+..+.+..++...++++|||||++.|+.+.+++...+ +.+++.+|+++++.+.|+++++..|+ ...+.++. +|..
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal 122 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDAL 122 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHH
Confidence 34445555556666788999999999999999999877 78999999999999999999999997 66688888 4764
Q ss_pred CC-C-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 230 RL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 230 ~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+. . ...++||+|+.-..=. +-..++..+.++|+|||++++-.....
T Consensus 123 ~~l~~~~~~~fDliFIDadK~---~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADKA---DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHhccCCCccEEEEeCChh---hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 32 2 3468999999754311 235789999999999999998665443
No 150
>PRK03612 spermidine synthase; Provisional
Probab=99.12 E-value=6.7e-10 Score=108.21 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhcC--cCCCCCeEEEEccCCCC-CCCCCCcce
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVDA 240 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~ 240 (333)
++++|||||||+|..+..+.+.....+++++|+++++++.++++ +...+ ....++++++.+|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46799999999999999998764336999999999999999983 32211 11146899999998663 223568999
Q ss_pred EEeccccccCCCh-----HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 241 VHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 241 V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
|++...-...+.+ .++++.+++.|||||++++...... ... -...++.+.+++.||
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~------~~~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY------FAP------------KAFWSIEATLEAAGL 437 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc------cch------------HHHHHHHHHHHHcCC
Confidence 9997543332222 3578999999999999998753221 000 011467888889999
No 151
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.10 E-value=3.5e-09 Score=93.32 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cC----------------------------
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DN---------------------------- 214 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~---------------------------- 214 (333)
...+||--|||.|+++..++..|. .+.|.|.|--|+-..+-.+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 356899999999999999999987 999999999987655543321 00
Q ss_pred ------cCCCCCeEEEEccCCCCCCCC---CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchh
Q 019957 215 ------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 285 (333)
Q Consensus 215 ------~~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 285 (333)
+....++....||+.++...+ ++||+|+..+.|.--++....|+.|.++|||||+.+-.-|..+.... .
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~-~- 211 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP-M- 211 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC-C-
Confidence 012346778888887764344 79999999988888888899999999999999988776665542111 0
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957 286 GRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 286 ~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
. ......--++.+|+..+.++.||++++...
T Consensus 212 ~-----~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 S-----IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-----CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 000112458899999999999999987644
No 152
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.09 E-value=1.8e-09 Score=97.08 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=105.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCCCCCcceEEeccc
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAGAA 246 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~v 246 (333)
...+|+|.|.|..+..+...+| .+-+++++...+..+...+. +++..+-+|..+ .| +-|+|++-++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~P----~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDTP----KGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceecccccccCC----CcCeEEEEee
Confidence 6799999999999999999888 79999999887776666532 457788888854 44 4579999999
Q ss_pred cccCCCh--HHHHHHHHHhccCCcEEEEEEecccC--CC------cchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957 247 LHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SS------TSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 316 (333)
Q Consensus 247 l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~ 316 (333)
|||++|- .++|++++..|+|||.+++.+...+. .. ..+....+.......-.-.+..+++.++.++||.+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPV 325 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCce
Confidence 9999876 48999999999999999999875432 11 11111222222223345578999999999999998
Q ss_pred EEE
Q 019957 317 YTS 319 (333)
Q Consensus 317 v~~ 319 (333)
...
T Consensus 326 ~~~ 328 (342)
T KOG3178|consen 326 CMV 328 (342)
T ss_pred eEE
Confidence 774
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=99.09 E-value=1.3e-09 Score=93.70 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=81.5
Q ss_pred CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE
Q 019957 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222 (333)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~ 222 (333)
..+..+..+...+... ...+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++ ..++.
T Consensus 31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~~ 100 (241)
T PHA03412 31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEAT 100 (241)
T ss_pred CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCCE
Confidence 3456666665555322 2236799999999999999888753 245899999999999999975 34688
Q ss_pred EEEccCCCCCCCCCCcceEEeccccccC--CC----------hHHHHHHHHHhccCCcE
Q 019957 223 LVRADVCRLPFASGFVDAVHAGAALHCW--PS----------PSNAVAEISRILRSGGV 269 (333)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~~~r~LkpgG~ 269 (333)
++.+|+...++ +++||+|+++=-..-. .+ ...+++.+.+++++|+.
T Consensus 101 ~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 101 WINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 99999987664 5689999996433211 11 24578888886666664
No 154
>PLN02476 O-methyltransferase
Probab=99.08 E-value=1.9e-09 Score=95.68 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR- 230 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~- 230 (333)
...+++..++...++++|||||+++|+.+.+++... +...++.+|.++..++.|+++++..|+ ..+++++.+|+.+
T Consensus 105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~ 182 (278)
T PLN02476 105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHH
Confidence 334445555555667899999999999999998763 356899999999999999999999986 6789999999855
Q ss_pred CC-C----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 231 LP-F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 231 lp-~----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
++ + ..++||+|+...-= .+-...++.+.+.|+|||++++-..
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 22 1 13689999986531 2235678889999999999888544
No 155
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.07 E-value=3.1e-09 Score=90.33 Aligned_cols=121 Identities=10% Similarity=0.086 Sum_probs=85.3
Q ss_pred cHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957 151 PDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (333)
Q Consensus 151 ~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (333)
.+...+.+.+.+.. .++.+|||+|||+|.++..+...+ ..+|+++|.++.+++.++++++..+ ..++.++.+|+.
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~ 112 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNAL 112 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHH
Confidence 34444445555432 456799999999999998765555 3599999999999999999988876 347999999986
Q ss_pred CC-CCCCCCcceEEeccccccCCChHHHHHHHHH--hccCCcEEEEEEec
Q 019957 230 RL-PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL 276 (333)
Q Consensus 230 ~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~ 276 (333)
+. +...++||+|++.--... .-...+++.+.. +|+|+|.+++....
T Consensus 113 ~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 113 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 53 222457999998654321 122345555554 37899988887643
No 156
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.07 E-value=1.5e-09 Score=92.69 Aligned_cols=116 Identities=13% Similarity=0.206 Sum_probs=90.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P- 232 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p- 232 (333)
+.+..++...+..+|||||+++|+.+.++++..+ +++++.+|+++...+.|++.++..|+ ..+++++.+|+.+. +
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~ 112 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPE 112 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHH
Confidence 4444444455677999999999999999998754 57999999999999999999999886 67899999998652 2
Q ss_pred ----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
...++||+|+.-..=. +-...+..+.+.|+|||++++-...
T Consensus 113 l~~~~~~~~fD~VFiDa~K~---~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDADKR---NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHTTTTTSEEEEEEESTGG---GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHhccCCCceeEEEEccccc---chhhHHHHHhhhccCCeEEEEcccc
Confidence 1135899999865422 2356788889999999999985543
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.06 E-value=3.7e-09 Score=96.80 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=81.6
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
..+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++.++ ..++.++++|+.++..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHH
Confidence 334445555544568999999999999999998764 99999999999999999998877 4579999999976532
Q ss_pred -CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 234 -~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
..++||+|++.---. .-... +.++...++|+++++++.
T Consensus 236 ~~~~~~D~Vv~dPPr~--G~~~~-~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 236 AQGEVPDLVLVNPPRR--GIGKE-LCDYLSQMAPRFILYSSC 274 (315)
T ss_pred hcCCCCeEEEECCCCC--CccHH-HHHHHHHcCCCeEEEEEC
Confidence 245799999863211 00122 333334467887777765
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.05 E-value=2.5e-09 Score=89.21 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=77.0
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcc
Q 019957 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVD 239 (333)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD 239 (333)
..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4567899999999999999999884456999999998 9999999888765211467777777765421 2346899
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
+|+...++..-.....+++.+.++|+++|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999987777889999999999999988877655
No 159
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.2e-08 Score=92.14 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=108.1
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVC 229 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~ 229 (333)
..+..+.+.++-...+|..|||-=||||.++..+.-.|. .++|.|++..|++-++.+++..+ .....+... |+.
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccc
Confidence 344556677777778899999999999999999988876 99999999999999999999876 345555665 999
Q ss_pred CCCCCCCCcceEEeccccccC-----CC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957 230 RLPFASGFVDAVHAGAALHCW-----PS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 300 (333)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~-----~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (333)
.+|+++.++|.|++---..-. .. -.++|+.+.++||+||++++..+..
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~----------------------- 313 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD----------------------- 313 (347)
T ss_pred cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-----------------------
Confidence 999988889999973222111 11 1478999999999999999988621
Q ss_pred CHHHHHHHHHhCCCcEEEEEE
Q 019957 301 TEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 301 t~~~l~~ll~~aGf~~v~~~~ 321 (333)
....+++.||+++....
T Consensus 314 ----~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 314 ----PRHELEELGFKVLGRFT 330 (347)
T ss_pred ----chhhHhhcCceEEEEEE
Confidence 22456788998877644
No 160
>PLN02366 spermidine synthase
Probab=99.03 E-value=3.5e-09 Score=96.02 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEccCCCC-C-CCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p-~~~~~fD~V~ 242 (333)
.+.+||+||||.|..+..+.+.....+++.+|+++.+++.+++.+...+. ...++++++.+|.... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 46799999999999999998874346899999999999999998764211 1256899999997432 1 2256899999
Q ss_pred eccccccCCC----hHHHHHHHHHhccCCcEEEEEE
Q 019957 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+...-.+.+. ...+++.+++.|+|||+++...
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8543332221 1467999999999999997754
No 161
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.03 E-value=5.6e-09 Score=99.85 Aligned_cols=113 Identities=17% Similarity=0.264 Sum_probs=84.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-- 231 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-- 231 (333)
..+.+.+.+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++..++ ..++.++.+|+.+.
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHH
Confidence 344555566556668999999999999999998764 89999999999999999998876 46899999998652
Q ss_pred --CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
++.+++||+|++.-.- ..-...+++.+.+ ++|++.++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 2335679999974321 1112455666554 88988877753
No 162
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=6.2e-09 Score=89.94 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHhhccc---CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957 150 GPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (333)
Q Consensus 150 ~~~~~~~~~~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (333)
.-++.++++.+.++.. .+..|||+|||+|..+..+....+...++++|.|+.++..|.++....++ ..++.++.-
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--SGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--cCceEEEec
Confidence 3455667777766543 34579999999999999999988889999999999999999999988876 667777744
Q ss_pred cCC-----CCCCCCCCcceEEeccccccCC------------Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957 227 DVC-----RLPFASGFVDAVHAGAALHCWP------------SP--------------SNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 227 d~~-----~lp~~~~~fD~V~~~~vl~h~~------------d~--------------~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+.+ ..+...+++|+++++--.=.-. +| ..++.-+.|.|+|||.+.+...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 332 2345578999999863210000 11 2345667899999999999876
Q ss_pred cc
Q 019957 276 LR 277 (333)
Q Consensus 276 ~~ 277 (333)
..
T Consensus 287 ~~ 288 (328)
T KOG2904|consen 287 ER 288 (328)
T ss_pred cc
Confidence 43
No 163
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.97 E-value=2.9e-09 Score=93.90 Aligned_cols=113 Identities=25% Similarity=0.366 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEccCCC------CCCCC
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR------LPFAS 235 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~------lp~~~ 235 (333)
.++..+||+|||-|..+....+.+ -..++|+||.+..++.|+++.+...-. ..-.+.|+.+|-.. +++++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 356789999999988777777766 448999999999999999876543210 01236788888743 34566
Q ss_pred CCcceEEeccccccC----CChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 236 GFVDAVHAGAALHCW----PSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
.+||+|.|-+++|+- .....+|+.+.+.|||||+++.+.|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 679999999988874 2345789999999999999999998764
No 164
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.97 E-value=1.8e-08 Score=84.51 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCcCCCCCeE
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLA 222 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~ 222 (333)
......+..+....++..|||--||+|.++...+..+.+.. ++|.|+++.+++.++++++..++ ...+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~ 91 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYID 91 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceE
Confidence 44556666666677788999999999999988877765545 89999999999999999998886 56789
Q ss_pred EEEccCCCCCCCCCCcceEEeccccccC-CCh-------HHHHHHHHHhccCCcEEEEEE
Q 019957 223 LVRADVCRLPFASGFVDAVHAGAALHCW-PSP-------SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~-~d~-------~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+.+.|+.++++.++++|+|+++--...- .+. ..+++++.++|++ ..+++.+
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 9999999999778899999996443321 111 3567888899999 4344433
No 165
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=6.1e-09 Score=88.41 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-----------------------------
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI----------------------------- 216 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~----------------------------- 216 (333)
.+..+|||||.+|.++..+++.+....+.|+||++..++.|++.++...-.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 466899999999999999999976678999999999999999977431100
Q ss_pred ----------CCCCeEEEEccCCCCCCCCCCcceEEeccccccC----CC--hHHHHHHHHHhccCCcEEEEEEecccCC
Q 019957 217 ----------LTSNLALVRADVCRLPFASGFVDAVHAGAALHCW----PS--PSNAVAEISRILRSGGVFVGTTFLRYTS 280 (333)
Q Consensus 217 ----------~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~----~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 280 (333)
...+..+...|+. .+....||+|+|..+--++ .| ...+++.+.++|.|||+|++.. -....
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP-QpWks 214 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP-QPWKS 214 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC-CchHH
Confidence 0001111122222 2235689999986654322 12 3689999999999999998843 21100
Q ss_pred CcchhhHHHHH-hhhccCCCCCHHHHHHHHHhC--CCcEEE
Q 019957 281 STSLTGRVLRE-RILQNYNYLTEEEIEDLCTSC--GLTNYT 318 (333)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~~a--Gf~~v~ 318 (333)
...- .+.... .......++.++.+..++.+. ||+.++
T Consensus 215 Y~ka-ar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 YKKA-ARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHH-HHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 0000 000100 111223456788888888776 666544
No 166
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.96 E-value=1.9e-08 Score=80.76 Aligned_cols=123 Identities=16% Similarity=0.299 Sum_probs=103.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE
Q 019957 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (333)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~ 225 (333)
-.|......+.+...+.+..+.-|||+|.|||-++..+.+++ +...++.+|.|++......++ .+...++.
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~ 100 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIIN 100 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccc
Confidence 356777778889999998888899999999999999999986 456899999999999888876 67788999
Q ss_pred ccCCCCC-----CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 019957 226 ADVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 226 ~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
+|+.++. +.+..||.|+|.--+-.++-. .+.|+++...|.+||.++..+...
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 9998764 567889999998776666533 578999999999999999988763
No 167
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.95 E-value=1.1e-09 Score=102.53 Aligned_cols=144 Identities=24% Similarity=0.306 Sum_probs=93.2
Q ss_pred cHHHHHHHHHhhcc--cC--CCeEEEEcCCcCHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHhcCcCCCCCeEE
Q 019957 151 PDEEFKMAQEYFKS--AQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLAL 223 (333)
Q Consensus 151 ~~~~~~~~~~~l~~--~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~~~~~i~~ 223 (333)
.+..++.|.+.++. .. -.++||||||+|.|+.+|.+++- .+..+ |..+..++.|.++ ++..
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa 165 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPA 165 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccch
Confidence 34455666666654 22 23589999999999999998852 22222 3344555555542 2333
Q ss_pred EEcc--CCCCCCCCCCcceEEeccccccCC-ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957 224 VRAD--VCRLPFASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 300 (333)
Q Consensus 224 ~~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (333)
+.+- -..+||+++.||+|.|+..+-.+. +-..+|-++.|+|+|||+++++.+..+... ......
T Consensus 166 ~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~----~~~~~~--------- 232 (506)
T PF03141_consen 166 MIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT----DEDLEE--------- 232 (506)
T ss_pred hhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccc----hHHHHH---------
Confidence 3333 367999999999999998876553 335689999999999999999876543000 000111
Q ss_pred CHHHHHHHHHhCCCcEEEE
Q 019957 301 TEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 301 t~~~l~~ll~~aGf~~v~~ 319 (333)
..+.++++.+..-++.+..
T Consensus 233 ~~~~~~~l~~~lCW~~va~ 251 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAE 251 (506)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 1246677777777776653
No 168
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.95 E-value=2.5e-09 Score=95.90 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=83.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
..+++|||||||+|-++...+++| ...|+++|.|.- ++.|++.+..+++ ...++++.+.++++.++-+++|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~i-a~~a~~iv~~N~~--~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSI-ADFARKIVKDNGL--EDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHH-HHHHHHHHHhcCc--cceEEEeecceEEEecCccceeEEeeh
Confidence 457899999999999999999998 679999997664 4899999999886 667999999998876557899999984
Q ss_pred cc---cccCCChHHHHHHHHHhccCCcEEEE
Q 019957 245 AA---LHCWPSPSNAVAEISRILRSGGVFVG 272 (333)
Q Consensus 245 ~v---l~h~~d~~~~l~~~~r~LkpgG~l~i 272 (333)
+. |-+-.-...+|-.=.+.|+|||.++=
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 43 22222334566666789999998763
No 169
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.94 E-value=7.6e-09 Score=90.71 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
...+++..++...+..+|||||+++|+.+.+++... ++++++.+|.++...+.|++.++..|+ ..+++++.+++.+.
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~ 143 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHH
Confidence 344555555555667799999999999999998763 467999999999999999999999987 68999999998552
Q ss_pred -C-C-----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 232 -P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 232 -p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+ + ..++||+|+..+-=. .-...+..+.+.|+|||++++-.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDadK~---~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDADKD---NYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHhccccCCcccEEEecCCHH---HhHHHHHHHHHhcCCCeEEEEcC
Confidence 3 1 136899999865421 22466788889999999988743
No 170
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.92 E-value=6.4e-09 Score=100.89 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=87.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEe
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA 243 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~ 243 (333)
.+..+||||||.|.++..++...|+..++|+|++...+..+.++....+ ..|+.++..|+..+. ++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 3568999999999999999999999999999999999999888887776 568888888875332 66789999988
Q ss_pred ccccccCCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 019957 244 GAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 244 ~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
++-=-|.... ..+++.+.++|||||.+.+.|-.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 6543222111 37899999999999999998843
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.91 E-value=1.2e-08 Score=90.88 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=72.6
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.....+.+.+.+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++.. ..++.++.+|+.+
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~ 86 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALK 86 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEecccc
Confidence 345566777777767788999999999999999999864 899999999999999987654 3579999999998
Q ss_pred CCCCCCCcceEEecccc
Q 019957 231 LPFASGFVDAVHAGAAL 247 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl 247 (333)
++++ .||.|+++--.
T Consensus 87 ~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 87 VDLP--EFNKVVSNLPY 101 (258)
T ss_pred CCch--hceEEEEcCCc
Confidence 8764 58999886543
No 172
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=6.7e-09 Score=90.56 Aligned_cols=107 Identities=25% Similarity=0.439 Sum_probs=83.6
Q ss_pred HHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 157 ~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
+..+++... .+..+||+|||.|-++.. .|..-++|.|.+...+..+++ ........+|+..+|+.+
T Consensus 35 ~v~qfl~~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~---------~~~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 35 MVRQFLDSQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR---------SGGDNVCRADALKLPFRE 101 (293)
T ss_pred HHHHHHhccCCcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc---------CCCceeehhhhhcCCCCC
Confidence 334444433 367899999999965432 255679999999988887775 222267889999999999
Q ss_pred CCcceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEec
Q 019957 236 GFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
.+||.+++..|+||+... ..+++++.++|+|||..++....
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 999999999999999654 57899999999999997776654
No 173
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.88 E-value=3.3e-08 Score=89.85 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEE-ccCCCCC----CCCCCcc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD 239 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD 239 (333)
.+.++||||||+|.....+....+..+++|+|+++.+++.|++++..+ ++ ..++.++. .|...+. ..++.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l--~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL--NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--cCcEEEEEccchhhhhhcccccCCceE
Confidence 457899999999988887777655679999999999999999999987 55 55777754 3333221 2356899
Q ss_pred eEEeccccccCCCh-----HHHHHHH----------------HHhccCCcEEEEEEecccCCCcchhhHHHHHhhh----
Q 019957 240 AVHAGAALHCWPSP-----SNAVAEI----------------SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL---- 294 (333)
Q Consensus 240 ~V~~~~vl~h~~d~-----~~~l~~~----------------~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~---- 294 (333)
+|+|+=-++.-.+. ..-.+.+ .+++.+||.+-+....... ...+.....
T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~e------S~~~~~~~gwfts 265 (321)
T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEE------SKAFAKQVLWFTS 265 (321)
T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHH------HHHHHhhCcEEEE
Confidence 99997554432211 1112222 2334466665554432210 000111000
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 295 QNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 295 ~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
-....-+.+.+.+.|++.|...+++
T Consensus 266 mv~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 266 LVSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred EeeccCCHHHHHHHHHHcCCceEEE
Confidence 1111236789999999999966554
No 174
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.3e-08 Score=82.21 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=87.2
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (333)
....+.+|+|+|||||.++...+-.| ...|+|+|+++++++.++++.++. ..++.++.+|+.++. ..+|.++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence 34567789999999999999999888 458999999999999999998873 568999999999874 6789888
Q ss_pred eccc----cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957 243 AGAA----LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 243 ~~~v----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
++-- ..| .|. .+|..+.+.- .++.+-. ..-+.+-+++..+.+|+.+..
T Consensus 114 mNPPFG~~~rh-aDr-~Fl~~Ale~s----~vVYsiH----------------------~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 114 MNPPFGSQRRH-ADR-PFLLKALEIS----DVVYSIH----------------------KAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ECCCCcccccc-CCH-HHHHHHHHhh----heEEEee----------------------ccccHHHHHHHHHhcCCeEEE
Confidence 8533 234 333 3444444432 1111111 112567788888899987765
Q ss_pred E
Q 019957 319 S 319 (333)
Q Consensus 319 ~ 319 (333)
.
T Consensus 166 ~ 166 (198)
T COG2263 166 I 166 (198)
T ss_pred E
Confidence 4
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.88 E-value=1.1e-08 Score=92.29 Aligned_cols=88 Identities=15% Similarity=0.250 Sum_probs=72.7
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.....+.+.+.+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++...+. ..++.++.+|+.+
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~ 96 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK 96 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence 344566777777777788999999999999999998865 899999999999999998876543 4689999999987
Q ss_pred CCCCCCCcceEEec
Q 019957 231 LPFASGFVDAVHAG 244 (333)
Q Consensus 231 lp~~~~~fD~V~~~ 244 (333)
.+++ .||+|+++
T Consensus 97 ~~~~--~~d~VvaN 108 (294)
T PTZ00338 97 TEFP--YFDVCVAN 108 (294)
T ss_pred hccc--ccCEEEec
Confidence 7643 68988875
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=1.4e-08 Score=91.13 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=69.9
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.....+.+.+.+...++.+|||||||+|.++..+++.++ +++|+|+++.+++.+++++. ..++.++.+|+.+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhc
Confidence 344556777777777788999999999999999999976 99999999999999988653 2479999999998
Q ss_pred CCCCCCCcceEEecc
Q 019957 231 LPFASGFVDAVHAGA 245 (333)
Q Consensus 231 lp~~~~~fD~V~~~~ 245 (333)
+++.+-.+|.|+++-
T Consensus 99 ~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 99 VDLSELQPLKVVANL 113 (272)
T ss_pred CCHHHcCcceEEEeC
Confidence 876532257777653
No 177
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=94.43 Aligned_cols=143 Identities=27% Similarity=0.365 Sum_probs=109.4
Q ss_pred HHHHhhHHhhcccCCCCCcHHHHHHH------HHh-hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 019957 133 FLYERGWRQNFNRSGFPGPDEEFKMA------QEY-FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205 (333)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~ 205 (333)
..|.+.|.+.++-..++......... ..+ ....++..++|+|||.|.....+.... ...++|+|.++..+..
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~ 148 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR 148 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence 44667777776665553332221111 111 112456689999999999999888765 5689999999998888
Q ss_pred HHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 206 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+.......++ .....++.+|+...|++++.||.+.+..+..|.+++..+++|+.|++||||+++..+....
T Consensus 149 ~~~~~~~~~l--~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 149 ANELAKKAYL--DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred HHHHHHHHHh--hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 8887766665 3445558899999999999999999999999999999999999999999999999776553
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.86 E-value=2.3e-08 Score=95.19 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=75.4
Q ss_pred CCeEEEEcCCcCHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (333)
+..|||||||+|-++....+.+ ...+|+++|-++.+....+++++.++. ..+|+++.+|++++..+ .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCC-CceeEEE
Confidence 5689999999999987776654 346999999999988888777677764 68899999999998754 4899999
Q ss_pred ec--cccccCCChHHHHHHHHHhccCCcEEE
Q 019957 243 AG--AALHCWPSPSNAVAEISRILRSGGVFV 271 (333)
Q Consensus 243 ~~--~vl~h~~d~~~~l~~~~r~LkpgG~l~ 271 (333)
+- +.+-.-.-....|....+.|||||.++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 82 222211223467889999999998865
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.85 E-value=5.5e-08 Score=86.33 Aligned_cols=86 Identities=12% Similarity=0.224 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.....+.+.+.+...++.+|||||||+|.++..+.+.++ .++++|+++.+++.+++++.. ..++.++.+|+..
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~ 86 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK 86 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence 445566777777777788999999999999999999986 799999999999999887643 3579999999998
Q ss_pred CCCCCCCcc---eEEecc
Q 019957 231 LPFASGFVD---AVHAGA 245 (333)
Q Consensus 231 lp~~~~~fD---~V~~~~ 245 (333)
+++. ++| +|+++-
T Consensus 87 ~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CChh--HcCCcceEEEcC
Confidence 8764 466 565543
No 180
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.85 E-value=2.8e-08 Score=88.98 Aligned_cols=108 Identities=13% Similarity=0.199 Sum_probs=79.2
Q ss_pred CCeEEEEcCCcCH--H--HHHHHHhC----CCCeEEEEeCCHHHHHHHHHHH------------------Hh-----cC-
Q 019957 167 GGLLVDVSCGSGL--F--SRKFAKSG----TYSGVVALDFSENMLRQCYDFI------------------KQ-----DN- 214 (333)
Q Consensus 167 ~~~vLDiGcG~G~--~--~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~------------------~~-----~~- 214 (333)
.-+|+..||+||. + +..+.+.+ ...+++|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999994 2 23333322 1358999999999999998742 00 00
Q ss_pred --c--CCCCCeEEEEccCCCCCCC-CCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEE
Q 019957 215 --T--ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 215 --~--~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+ .-...+.|.+.|+.+.+++ .+.||+|+|.+++.|+.+ ..++++.+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0 0124578899999775433 578999999999999965 4689999999999999987744
No 181
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.84 E-value=3.7e-08 Score=92.29 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=81.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-C
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-A 234 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~ 234 (333)
..+.+++...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++++.++ ..++.++.+|+.+... .
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhc
Confidence 3344444434567999999999999999997654 89999999999999999998877 3489999999966421 1
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.++||+|++.=--.. -...+++.+. .++|++.++++.
T Consensus 298 ~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 298 MSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 246999988533211 1134555554 478999888876
No 182
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.82 E-value=4.1e-08 Score=91.82 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=85.8
Q ss_pred HHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957 156 KMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (333)
Q Consensus 156 ~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (333)
..+.+.+... ++.+|||++||+|.++..++.......|+++|+++.+++.++++++.++ ..++.++.+|+..+...
T Consensus 46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~ 122 (382)
T PRK04338 46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHE 122 (382)
T ss_pred HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhh
Confidence 3444444322 3468999999999999999876544589999999999999999998877 44677899998664321
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.+.||+|++.- . ..+..++..+.+.+++||+++++.
T Consensus 123 ~~~fD~V~lDP-~---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 ERKFDVVDIDP-F---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred cCCCCEEEECC-C---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 45799999853 1 445778888788899999999983
No 183
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.8e-07 Score=74.37 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=95.9
Q ss_pred hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (333)
+.......+||||||+|..+..++.. +++..+.++|+++.+++.-.+.++.++ .++..++.|+..-- ..++.|+
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~l-~~~~VDv 113 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSGL-RNESVDV 113 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhhh-ccCCccE
Confidence 33334678999999999999888876 667789999999999988887776653 46889999986532 2489999
Q ss_pred EEecccccc-----C------------CC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCC
Q 019957 241 VHAGAALHC-----W------------PS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 299 (333)
Q Consensus 241 V~~~~vl~h-----~------------~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (333)
++.+--..- + .+ ..+++..+-.+|.|.|++++......
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------------------- 172 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------------------- 172 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------------
Confidence 987532211 1 01 13456667788899999999875432
Q ss_pred CCHHHHHHHHHhCCCcEEEE
Q 019957 300 LTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 300 ~t~~~l~~ll~~aGf~~v~~ 319 (333)
.++++-++++.-||.....
T Consensus 173 -~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 173 -KPKEILKILEKKGYGVRIA 191 (209)
T ss_pred -CHHHHHHHHhhcccceeEE
Confidence 3568888999999976553
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.2e-08 Score=80.69 Aligned_cols=114 Identities=25% Similarity=0.335 Sum_probs=85.9
Q ss_pred HHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHHhcC-------cCCCCCeEEE
Q 019957 156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-G-TYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALV 224 (333)
Q Consensus 156 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~v~g~D~s~~~~~~a~~~~~~~~-------~~~~~~i~~~ 224 (333)
..+.++|. ..++.++||+|.|+|+++..++.. + +....+|+|.-++.++.+++++...- .....++.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 33444444 457899999999999999888754 2 23355999999999999999886542 0124578889
Q ss_pred EccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.+|....-.+...||.|.+... ..+..+++...|++||.+++...
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred eCCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 9998877666789999999854 34456778888999999998654
No 185
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.7e-07 Score=78.38 Aligned_cols=111 Identities=22% Similarity=0.397 Sum_probs=94.5
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
+.+|..++...|+.+|||-|+|+|.++.++++. +|...++-+|+.+...+.|++.+++.++ ..++++..-|+...-|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccCCc
Confidence 467888888899999999999999999999887 6777999999999999999999999986 8899999999976543
Q ss_pred --CCCCcceEEeccccccCCChHHHHHHHHHhccCCcE-EEE
Q 019957 234 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV-FVG 272 (333)
Q Consensus 234 --~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~-l~i 272 (333)
++..+|.|++. ++.|..++--+..+||.+|. |+-
T Consensus 172 ~~ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 172 LIKSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cccccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEe
Confidence 46788888764 57888888889999998774 443
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.75 E-value=2.3e-07 Score=78.51 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-C-CCC-Ccce
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-ASG-FVDA 240 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~-~fD~ 240 (333)
..+.+|||++||+|.++..+..++. ..|+++|.++.+++.++++++..+. ..++.++.+|+... . + ... .||+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehhHHHHHHHhhccCCCceE
Confidence 3577999999999999999999874 5899999999999999999888764 34789999999442 2 1 122 4788
Q ss_pred EEeccccccCCChHHHHHHHH--HhccCCcEEEEEEe
Q 019957 241 VHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTF 275 (333)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~ 275 (333)
|+..=-... .....++..+. .+|+++|.+++...
T Consensus 125 v~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 125 IYLDPPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 877433221 22344455443 36888898887654
No 187
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.74 E-value=4.7e-08 Score=82.87 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHH----HhcCc-----------------
Q 019957 166 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFI----KQDNT----------------- 215 (333)
Q Consensus 166 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~~~v~g~D~s~~~~~~a~~~~----~~~~~----------------- 215 (333)
+.-+|+.+||++|. ++..+.+. ....+++|+|+|+.+++.|++-. .-.++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999994 23333331 11458999999999999998632 00000
Q ss_pred ----CCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957 216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 216 ----~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.-..++.|...|+.+.+...+.||+|+|.+||-++... .++++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 01246899999998843346799999999999999766 589999999999999999954
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.74 E-value=1.4e-07 Score=79.13 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=82.6
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (333)
+++|||+|.|.=+..++-..|+.+++.+|.+..-+.+.+......+ ..|+.++.+.+++ +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 7999999999999999988898999999999998888888877777 5689999999988 444679999999887
Q ss_pred cCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 249 CWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.....++.-+...+++||.+++.-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788888999999999998865
No 189
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.74 E-value=6.3e-08 Score=82.15 Aligned_cols=100 Identities=21% Similarity=0.328 Sum_probs=75.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.+|||+.||.|.++..+++.+....|+++|++|.+++..+++++.+++ ...+..+.+|..++.. .+.||-|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv--~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV--ENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC--CCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 457899999999999999999966566899999999999999999999987 6779999999988764 7799999886
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFV 271 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~ 271 (333)
.. .....+|..+.+++++||.+-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 223467899999999999863
No 190
>PRK04148 hypothetical protein; Provisional
Probab=98.73 E-value=2e-07 Score=73.40 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
.+.+.+.+...++.+|||||||+|. ++..|.+.|. +|+++|+++..++.++++ .+.++.+|+.+..+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 3555565655556789999999996 8888888776 999999999998888763 46899999987653
Q ss_pred C-CCCcceEEeccccccCCChHHHHHHHHHhcc-CCcEEEEEEeccc
Q 019957 234 A-SGFVDAVHAGAALHCWPSPSNAVAEISRILR-SGGVFVGTTFLRY 278 (333)
Q Consensus 234 ~-~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~ 278 (333)
. -+.+|+|.+..- |.++..-+.++-+ -|.-+++.....+
T Consensus 73 ~~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 73 EIYKNAKLIYSIRP------PRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3 357899988653 4454555555554 3566777665443
No 191
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.72 E-value=2.1e-07 Score=81.58 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=92.0
Q ss_pred HHHHHhhccc-CCCeEEEEcCCc---CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 156 KMAQEYFKSA-QGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 156 ~~~~~~l~~~-~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
.+..+++... .-...||||||- |..-....+..|+++|+.+|+++-.+..++..+.... .....++++|+.+.
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDP 133 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-H
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCH
Confidence 3444444444 345799999995 3444444445788999999999999999999887732 12389999999774
Q ss_pred C------CCCCCcc-----eEEeccccccCCC---hHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHHHhhhcc
Q 019957 232 P------FASGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQN 296 (333)
Q Consensus 232 p------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~ 296 (333)
. -..+-+| .|++..+|||++| |..+++.++..|.||.+|+++-......... .............
T Consensus 134 ~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~ 213 (267)
T PF04672_consen 134 EAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSP 213 (267)
T ss_dssp HHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS-
T ss_pred HHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCC
Confidence 2 1123344 5788999999964 7899999999999999999988765421111 0111122233456
Q ss_pred CCCCCHHHHHHHHHhCCCcEEE
Q 019957 297 YNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 297 ~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
....|.+++..+|. ||+.++
T Consensus 214 ~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 214 GRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp ---B-HHHHHHCCT--TSEE-T
T ss_pred ceecCHHHHHHHcC--CCccCC
Confidence 77889999999998 787654
No 192
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.70 E-value=2.4e-08 Score=87.55 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCcCHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-------------CC------------CC
Q 019957 166 QGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------------IL------------TS 219 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------------~~------------~~ 219 (333)
++.++||||||.--+ +..+.+... +++..|.++...+..++.++..+. +. ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 466899999998543 222333333 899999999988877776654321 00 01
Q ss_pred Ce-EEEEccCCCCC-CCC-----CCcceEEeccccccCC-Ch---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH
Q 019957 220 NL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288 (333)
Q Consensus 220 ~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 288 (333)
.+ .++.+|+.+.+ +.. .+||+|++..+|+-.. |. ..+++.+.++|||||.|++......... ..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y-~v---- 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYY-MV---- 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEE-EE----
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeE-EE----
Confidence 12 47778986643 332 3599999999999764 44 4679999999999999999886542110 00
Q ss_pred HHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE------eCeEEEEEEeC
Q 019957 289 LRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV------QQSFIMFAAQK 332 (333)
Q Consensus 289 ~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~------~~~~~~~~a~k 332 (333)
+...-+...++++.+++.++++||.+.+... ......++|+|
T Consensus 209 --G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 209 --GGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp --TTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred --CCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 1111234468899999999999999887543 12235556665
No 193
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.69 E-value=8.4e-09 Score=85.47 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=82.3
Q ss_pred cHHHHHHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957 151 PDEEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (333)
Q Consensus 151 ~~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (333)
.++..+.++..-++ ..+.++||+|+|.|..+..++..+. +|++.|.|..|..+.+++ +..++.
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~-- 159 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLT-- 159 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceee--
Confidence 34444444433322 2356899999999999999998765 899999999998877763 122221
Q ss_pred CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccC-CcEEEEEEecc
Q 019957 228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 277 (333)
Q Consensus 228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~ 277 (333)
..+..-.+-+||+|.|..+|...-+|-++|+.++.+|+| +|++++.-...
T Consensus 160 ~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 160 EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 111111244799999999999999999999999999999 89888765443
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.69 E-value=3e-07 Score=87.98 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=90.6
Q ss_pred HHHhh--cccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C
Q 019957 158 AQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (333)
Q Consensus 158 ~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (333)
....+ .+.++.+|||+++|.|.-+..++... ....+++.|+++..++..++++++.| ..++.+...|...+. .
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAA 179 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhh
Confidence 34445 66788999999999999998888874 23589999999999999999999988 567888888887653 2
Q ss_pred CCCCcceEEe----c--cccccCCCh----------------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 234 ASGFVDAVHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 234 ~~~~fD~V~~----~--~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
..+.||.|+. + +++.+-++. .++|..+.+.|||||+|+.+|-...
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 2457999994 3 333332211 4678899999999999999886543
No 195
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.67 E-value=2e-07 Score=86.58 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=86.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C---CCCCCcceEE
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P---FASGFVDAVH 242 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p---~~~~~fD~V~ 242 (333)
+++|||+-|=||.++..++..| ..+|+.+|.|...++.|+++++.+|+. ...+.++++|+.+. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLD-GDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCC-ccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 7899999999999999999876 569999999999999999999999862 45689999999653 2 2345999999
Q ss_pred ecc---------ccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957 243 AGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 243 ~~~---------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
+.- ...-..+-..++..+.++|+|||.+++.+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 721 11111233567889999999999999988654
No 196
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.65 E-value=4.6e-07 Score=84.51 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL- 231 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l- 231 (333)
.+.+.+.+++... +.+|||++||+|.++..+++... +|+|+|.++.+++.+++++..++ ..++.++.+|+.+.
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~l 267 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHHH
Confidence 3445555555432 35799999999999998888764 89999999999999999998877 45899999998653
Q ss_pred C-CC--------------CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 232 P-FA--------------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 232 p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+ +. ..+||+|+..=-- ..-..++++.+. +++++++++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEe
Confidence 1 10 1258999873220 011134444444 4778777766
No 197
>PLN02823 spermine synthase
Probab=98.65 E-value=2.3e-07 Score=85.07 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA 243 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (333)
.+.+||.||+|.|..+..+.+..+..+++.+|+++.+++.+++.+...+ ....++++++.+|.... ...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3568999999999999998886555689999999999999999875421 11157899999998653 334578999998
Q ss_pred ccccccC-CC------hHHHHH-HHHHhccCCcEEEEEE
Q 019957 244 GAALHCW-PS------PSNAVA-EISRILRSGGVFVGTT 274 (333)
Q Consensus 244 ~~vl~h~-~d------~~~~l~-~~~r~LkpgG~l~i~~ 274 (333)
... ... .. ...+++ .+.+.|+|||++++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 632 111 01 135677 8999999999988753
No 198
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.64 E-value=2e-07 Score=82.82 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=79.8
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (333)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (333)
...+..|||+|||+|-++...+..| ..+|+++|. .+|.++|++.++.+++ ..+|.++.|-++++.++ ++.|+|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~--~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNL--ADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCc--cceEEEccCccccccCc-hhccEEEe
Confidence 3467889999999999999999888 568999996 4589999999988876 88999999999988764 58999997
Q ss_pred ccccccCCCh--HHHHHHHHHhccCCcEEEEE
Q 019957 244 GAALHCWPSP--SNAVAEISRILRSGGVFVGT 273 (333)
Q Consensus 244 ~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~ 273 (333)
--.=.-+-+. .+..-.+++.|||.|..+=+
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 3221111111 12233456999999987643
No 199
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=7.4e-08 Score=75.46 Aligned_cols=87 Identities=18% Similarity=0.351 Sum_probs=69.8
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
..|.+-.....+.+++|+|||.|.++....-.. ...++|+|+++.+++.+.+++++. .-+++++++|+.++.+..
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccC
Confidence 334444455678899999999999996555443 458999999999999999988876 447899999999988888
Q ss_pred CCcceEEecccc
Q 019957 236 GFVDAVHAGAAL 247 (333)
Q Consensus 236 ~~fD~V~~~~vl 247 (333)
+.||.++.+--+
T Consensus 113 g~fDtaviNppF 124 (185)
T KOG3420|consen 113 GIFDTAVINPPF 124 (185)
T ss_pred CeEeeEEecCCC
Confidence 999999986544
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.61 E-value=5.6e-07 Score=80.65 Aligned_cols=116 Identities=18% Similarity=0.099 Sum_probs=75.0
Q ss_pred HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CCCCC
Q 019957 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFA 234 (333)
Q Consensus 157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~ 234 (333)
.+...++...+.+|||+|+|+|..+..+.+..+ ..+++++|.|+.|++.++..+..... .....+...... ..++.
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhhhhhhcccccCC
Confidence 333344445677999999999988877776643 34799999999999999987765321 111111111111 12222
Q ss_pred CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
..|+|++.++|..+++. ..+++.+.+.+. +.|+++++..+
T Consensus 102 --~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlVEpGt~ 143 (274)
T PF09243_consen 102 --PDDLVIASYVLNELPSAARAELVRSLWNKTA--PVLVLVEPGTP 143 (274)
T ss_pred --CCcEEEEehhhhcCCchHHHHHHHHHHHhcc--CcEEEEcCCCh
Confidence 34999999999999872 234444444444 48999988764
No 201
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.61 E-value=5e-07 Score=80.70 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=84.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCC-CCCeEEEEccCCCC-CCCCCCcceEEecc
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRL-PFASGFVDAVHAGA 245 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~~~i~~~~~d~~~l-p~~~~~fD~V~~~~ 245 (333)
.+||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....... .+++.++.+|..+. .-..++||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 59999999999999999999877899999999999999999987643111 37899999998654 21233899999754
Q ss_pred ccccCCCh------HHHHHHHHHhccCCcEEEEEE
Q 019957 246 ALHCWPSP------SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 246 vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.=. . .| ..+++.+++.|+++|+++...
T Consensus 158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 322 1 22 688999999999999999974
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.60 E-value=2.1e-07 Score=78.23 Aligned_cols=125 Identities=12% Similarity=0.182 Sum_probs=88.6
Q ss_pred CCcHHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (333)
|..+..-+.+.+.+.. ..+.++||+-||+|.++..+..+| ..+|+.+|.++..+...+++++..+. ...+.++..
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCC--Ccceeeecc
Confidence 4455555666666664 478899999999999999999888 56999999999999999999988764 446889998
Q ss_pred cCCC-CC---CCCCCcceEEeccccccCCC-hHHHHHHHH--HhccCCcEEEEEEecc
Q 019957 227 DVCR-LP---FASGFVDAVHAGAALHCWPS-PSNAVAEIS--RILRSGGVFVGTTFLR 277 (333)
Q Consensus 227 d~~~-lp---~~~~~fD~V~~~~vl~h~~d-~~~~l~~~~--r~LkpgG~l~i~~~~~ 277 (333)
|+.. ++ ....+||+|++.=-... .. ...++..+. .+|+++|.+++.....
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8643 22 13679999998533222 12 256677776 7899999999977554
No 203
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=1.7e-06 Score=78.92 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=105.8
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
.++.+.... |.+|||.=+|.|.++..+++.+.. .|+++|++|.+++..+++++.+++ ...+..+++|....+..-
T Consensus 180 ~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev~~~~ 254 (341)
T COG2520 180 ARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREVAPEL 254 (341)
T ss_pred HHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHhhhcc
Confidence 445555443 889999999999999999999853 499999999999999999999886 555999999998887655
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
+.+|-|++... .+...++..+.+.+++||.+...+........ ......+.....+.|.+
T Consensus 255 ~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~----------------~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 255 GVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIE----------------ERPEKRIKSAARKGGYK 314 (341)
T ss_pred ccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccchhhcc----------------cchHHHHHHHHhhccCc
Confidence 78999998654 35567888999999999999988866542111 12346777777777753
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.1e-07 Score=80.40 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
....++.+.+.....++..|||||+|.|.++..|.+.+. .|+++|+++.++...++++.. ..+++++.+|+..
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk 87 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALK 87 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhc
Confidence 445567888888887888999999999999999999987 899999999999999988763 5689999999998
Q ss_pred CCCCCC-CcceEEec
Q 019957 231 LPFASG-FVDAVHAG 244 (333)
Q Consensus 231 lp~~~~-~fD~V~~~ 244 (333)
.+++.- .++.|+++
T Consensus 88 ~d~~~l~~~~~vVaN 102 (259)
T COG0030 88 FDFPSLAQPYKVVAN 102 (259)
T ss_pred CcchhhcCCCEEEEc
Confidence 887643 57777765
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.59 E-value=1.1e-06 Score=81.66 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
.+.+.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.+++++..++ ..++.++.+|+.++-
T Consensus 185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHHHH
Confidence 3344555555432 34799999999999999988764 99999999999999999998877 457999999986631
Q ss_pred C-----------C-----CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 233 F-----------A-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 233 ~-----------~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
- . ...||+|+..=- ...-...+++.+. +|+++++++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 1 0 113798887321 0011124444443 4788888866
No 206
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=1.4e-06 Score=74.06 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=93.6
Q ss_pred CcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (333)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (333)
...+..+++..++....+++.||||.=||+.+..++...| +++|+++|+++...+.+.+..+.+|+ ...+++++++.
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv--~~KI~~i~g~a 134 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV--DHKITFIEGPA 134 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc--cceeeeeecch
Confidence 3445556666666666778999999999998888887754 57999999999999999999999887 78999999988
Q ss_pred CC-CC-----CCCCCcceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEE
Q 019957 229 CR-LP-----FASGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 229 ~~-lp-----~~~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.+ ++ ...++||+++.. |..+- .....++.+++|+||++++--
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 54 22 346799999963 33322 367889999999999998844
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.55 E-value=7.4e-07 Score=81.57 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=88.5
Q ss_pred CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC
Q 019957 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT 218 (333)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~ 218 (333)
+.++.+....+++..++.+.++.+|||.+||+|.++..+.+. ....+++|+|+++.++..++.++.-.+.. .
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-N 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-C
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-c
Confidence 356788999999999998888889999999999998888763 24568999999999999988776544431 2
Q ss_pred CCeEEEEccCCCCCC-C-CCCcceEEeccccccC--------CC-------------hHHHHHHHHHhccCCcEEEEEEe
Q 019957 219 SNLALVRADVCRLPF-A-SGFVDAVHAGAALHCW--------PS-------------PSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 219 ~~i~~~~~d~~~lp~-~-~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
....+..+|....+. . ..+||+|+++--+.-. .+ ...++..+.+.|++||++.+..|
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 234677888755442 2 5789999984222111 01 12578889999999999988887
Q ss_pred cc
Q 019957 276 LR 277 (333)
Q Consensus 276 ~~ 277 (333)
..
T Consensus 185 ~~ 186 (311)
T PF02384_consen 185 NG 186 (311)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.54 E-value=3.1e-06 Score=74.66 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEccCCCC-CCCCC-CcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~-~fD~V~ 242 (333)
.+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+..... ...++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 46799999999999999999876567999999999999999998765321 1257899999998543 22233 899999
Q ss_pred eccccccCCC----hHHHHHHHHHhccCCcEEEEEEec
Q 019957 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
....-...+. ...+++.+++.|+|||++++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 7443222221 257899999999999999997743
No 209
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.52 E-value=9.3e-07 Score=76.67 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=79.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEccCCC-----CCCCCCCc
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCR-----LPFASGFV 238 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~-----lp~~~~~f 238 (333)
.++.+|||+|||+|.++..+++.+ ..+|+++|+++.++....+ . .+++. +...|+.. ++..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence 457789999999999999999986 4589999999988765221 1 22221 22333332 22122367
Q ss_pred ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE-ecccCCCcchhhHHHHHh----hhccCCCCCHHHHHHHHHhCC
Q 019957 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT-FLRYTSSTSLTGRVLRER----ILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~ll~~aG 313 (333)
|+++.+..+ .+..+.+.|++ |.+++.. |-.. . ++..... .....+..-.+++...+.+.|
T Consensus 145 DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqFE--~----~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~ 209 (228)
T TIGR00478 145 DVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQFE--A----GREKKNKKGVVRDKEAIALALHKVIDKGESPD 209 (228)
T ss_pred eEEEeehHh--------HHHHHHHHhCc-CeEEEEcChHhh--h----cHhhcCcCCeecCHHHHHHHHHHHHHHHHcCC
Confidence 777765442 48889999999 7665533 2111 0 1100000 001122233467778888899
Q ss_pred CcEEEEE
Q 019957 314 LTNYTSK 320 (333)
Q Consensus 314 f~~v~~~ 320 (333)
|++....
T Consensus 210 ~~~~~~~ 216 (228)
T TIGR00478 210 FQEKKII 216 (228)
T ss_pred CeEeeEE
Confidence 9987643
No 210
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.52 E-value=5.8e-07 Score=80.39 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C--CCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~ 242 (333)
.+.+|||+=|=||.++..++..| ..+|+.+|.|..+++.+++++..+++. ..++.++..|+.+. . -..++||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 47899999999999999888766 558999999999999999999998862 35789999998652 2 1256899999
Q ss_pred ec---cc---cccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 243 AG---AA---LHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 243 ~~---~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
+. +. ..-..+-.+++..+.++|+|||.|++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 72 11 000123356788899999999999877754
No 211
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.51 E-value=2.5e-06 Score=68.82 Aligned_cols=104 Identities=29% Similarity=0.445 Sum_probs=75.7
Q ss_pred EEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC--CCCCC-CCcceEEecc
Q 019957 170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA 245 (333)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~~fD~V~~~~ 245 (333)
+||+|||+|... .+...... ..++|+|+++.++..++......+ ...+.+..+|... +++.+ ..||++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG---LGLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC---CCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 999999999966 33333222 378999999999988555432211 1116788888876 77776 489999 555
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
...|..++...+.++.++++|+|.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 544444488899999999999999999887654
No 212
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-06 Score=77.39 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCeEEEEcCCcCH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHH-----HhcCcC----------------
Q 019957 167 GGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFI-----KQDNTI---------------- 216 (333)
Q Consensus 167 ~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~-----~~~~~~---------------- 216 (333)
.-+|+-+||+||. ++..+.+.++ ..+++|+|+|..+++.|+.-. ...+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999994 3344444442 478999999999999987522 101110
Q ss_pred -----CCCCeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957 217 -----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 217 -----~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 274 (333)
-...+.|...|+..-++..+.||+|+|-+||=.+..+ .++++.++..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1235678888886655345689999999999998766 578999999999999999954
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.50 E-value=3.1e-06 Score=72.27 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=88.8
Q ss_pred EEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcceEEeccccc
Q 019957 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAGAALH 248 (333)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~~vl~ 248 (333)
|.||||-.|++..+|.+.+....++++|+++.-++.|++++...++ ..++.+..+|- ..++. .+..|.|+..++=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCC-CCCCCEEEEecCCH
Confidence 6899999999999999998767899999999999999999999887 77899999995 44542 22378888755422
Q ss_pred cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE---EeCeE
Q 019957 249 CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK---VQQSF 325 (333)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~---~~~~~ 325 (333)
.+ ....|.+....++....|++.... ....++++|.++||.++++. ..+.|
T Consensus 78 ~l--I~~ILe~~~~~~~~~~~lILqP~~------------------------~~~~LR~~L~~~gf~I~~E~lv~e~~~~ 131 (205)
T PF04816_consen 78 EL--IIEILEAGPEKLSSAKRLILQPNT------------------------HAYELRRWLYENGFEIIDEDLVEENGRF 131 (205)
T ss_dssp HH--HHHHHHHTGGGGTT--EEEEEESS-------------------------HHHHHHHHHHTTEEEEEEEEEEETTEE
T ss_pred HH--HHHHHHhhHHHhccCCeEEEeCCC------------------------ChHHHHHHHHHCCCEEEEeEEEeECCEE
Confidence 11 245566666666665667765432 24689999999999998863 24555
Q ss_pred E
Q 019957 326 I 326 (333)
Q Consensus 326 ~ 326 (333)
+
T Consensus 132 Y 132 (205)
T PF04816_consen 132 Y 132 (205)
T ss_dssp E
T ss_pred E
Confidence 3
No 214
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=3.6e-06 Score=78.20 Aligned_cols=128 Identities=21% Similarity=0.249 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (333)
+....+....+.+.++.+|||+.++.|.=+.+++....+ ..|+++|.++.-++..++++++.| ..++..+..|..
T Consensus 142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~ 218 (355)
T COG0144 142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDAR 218 (355)
T ss_pred CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccc
Confidence 333455566788889999999999999988888887643 457999999999999999999988 556788888876
Q ss_pred CCC---CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957 230 RLP---FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSST 282 (333)
Q Consensus 230 ~lp---~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 282 (333)
.++ ...++||.|+. .+++..-++. .++|..+.++|||||.|+.+|-......+
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN 296 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN 296 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence 554 22236999996 4555332221 36788999999999999999976653333
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=7.2e-06 Score=70.06 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (333)
+.+++|||+|.|.=+.-++-..|+.+++-+|....-+.+.+....+.+ .+|+.++.+.++++.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhcccccccCcEEEeehc
Confidence 579999999999999988877888899999999988888888777776 67899999999998632222999999776
Q ss_pred cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
.+...+..-+...+|+||.++..-.. ...+ -..+.+......|+.+.++..
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~~-----------~~~~---------e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKGL-----------AGKD---------ELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhHH-----------hhhh---------hHHHHHHHHHhhcCcEEEEEE
Confidence 44566677777889999987653311 1111 124667778888888777543
No 216
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.42 E-value=1.9e-06 Score=74.70 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=70.6
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
.++.|.+.....++..|||||.|||.++..+.+.+. +|+++|+++.|+....++...... ...+.++.+|+...++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccCCC
Confidence 345566666677888999999999999999999987 999999999999999988765432 5689999999988764
Q ss_pred CCCCcceEEec
Q 019957 234 ASGFVDAVHAG 244 (333)
Q Consensus 234 ~~~~fD~V~~~ 244 (333)
+ .||.++++
T Consensus 122 P--~fd~cVsN 130 (315)
T KOG0820|consen 122 P--RFDGCVSN 130 (315)
T ss_pred c--ccceeecc
Confidence 4 79999884
No 217
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.40 E-value=9.7e-07 Score=79.33 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=72.3
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (333)
.+.+.+.+.+.++..+||.+||.|..+..+++..+ ...|+|+|.++.+++.+++++.. ..++.++.+|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence 34555666667788999999999999999999864 57999999999999999988754 347999999998764
Q ss_pred -CCCC--CcceEEeccc--cccCCChH
Q 019957 233 -FASG--FVDAVHAGAA--LHCWPSPS 254 (333)
Q Consensus 233 -~~~~--~fD~V~~~~v--l~h~~d~~ 254 (333)
..++ ++|.|++... -+++.++.
T Consensus 83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred HHHcCCCccCEEEECCCccccccCCCc
Confidence 1122 7999997432 23444443
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.39 E-value=6.8e-06 Score=68.33 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (333)
|..+..-+.+.+++.+ ..+.++||+=+|+|.++..+..+| ...++.+|.+..+....+++++..+. ..+..++..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~--~~~~~~~~~ 100 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGL--EGEARVLRN 100 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC--ccceEEEee
Confidence 4455555677777765 578999999999999999999997 56999999999999999999888764 568888888
Q ss_pred cCCCC-CCCCC--CcceEEecccccc-CCChHHHHHH--HHHhccCCcEEEEEEecc
Q 019957 227 DVCRL-PFASG--FVDAVHAGAALHC-WPSPSNAVAE--ISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 227 d~~~l-p~~~~--~fD~V~~~~vl~h-~~d~~~~l~~--~~r~LkpgG~l~i~~~~~ 277 (333)
|+... +.... .||+|+..--.+. +.+....+.. -..+|+|+|.+++.....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 88743 11222 4999998554441 2222333333 447799999999977543
No 219
>PRK00536 speE spermidine synthase; Provisional
Probab=98.38 E-value=3.6e-06 Score=74.40 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.+.+||=||.|.|..++.+.+.- .+|+-+|+++.+++.+++.+.... ....++++++.. +.+. ..++||+|+..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCEEEEc
Confidence 45799999999999999999874 399999999999999999665321 112577887752 2211 23689999976
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.. .+..+.+.+++.|+|||+++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 42 45677899999999999999865
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.36 E-value=1.5e-05 Score=72.68 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE--EEccCCC----CCC--
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR----LPF-- 233 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~--~~~d~~~----lp~-- 233 (333)
++..|+|+|||+|.=+..|.+. +....++++|+|..+++.+.+++.... .+.+.+ +.+|+.+ ++-
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~---~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN---FSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc---CCCeEEEEEEecHHHHHhhccccc
Confidence 4568999999999866655443 334579999999999999999887322 455555 7888855 221
Q ss_pred CCCCcceEEe-ccccccCCCh--HHHHHHHHH-hccCCcEEEEEE
Q 019957 234 ASGFVDAVHA-GAALHCWPSP--SNAVAEISR-ILRSGGVFVGTT 274 (333)
Q Consensus 234 ~~~~fD~V~~-~~vl~h~~d~--~~~l~~~~r-~LkpgG~l~i~~ 274 (333)
......+++. ..+|..++.. ..+|+++++ .|+|||.|++..
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1234566665 4578887655 378999999 999999988854
No 221
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=9.5e-06 Score=76.96 Aligned_cols=109 Identities=18% Similarity=0.323 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
+.+.+.+.+++...++.++||+=||.|.++..+++... +|+|+|+++.+++.|+++++.++ ..|+.|..++++++
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~ 353 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHH
Confidence 44556777788877788999999999999999997765 99999999999999999999998 56799999999887
Q ss_pred CCC---CCCcceEEeccccccCCCh------HHHHHHHHHhccCCcEEEEEE
Q 019957 232 PFA---SGFVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 232 p~~---~~~fD~V~~~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~ 274 (333)
... ...+|+|+. || ..+++.+.+ ++|..+++++.
T Consensus 354 ~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 354 TPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred hhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 533 357899986 33 244555444 67778888866
No 222
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.33 E-value=9.2e-07 Score=72.26 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=55.9
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCC-cceEEec
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG 244 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~ 244 (333)
.|+|+.||.|..+..+++.+. .|+++|+++..++.++.+++..|+ ..+++++++|+.++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999976 999999999999999999999886 779999999997653 22222 8999973
No 223
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=1e-07 Score=75.43 Aligned_cols=59 Identities=25% Similarity=0.205 Sum_probs=48.8
Q ss_pred CeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
.+++++--....+|.+++.|+|.+.+|+||+.-. ..++++++++|||||.|-++.|...
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4555554445678999999999999999998643 5789999999999999999998754
No 224
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.32 E-value=5.2e-05 Score=64.53 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=94.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCc
Q 019957 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 238 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 238 (333)
...++.+||-+|.++|.....++.- ++.+.|+++|+|+...+..-...+. .+|+--+..|+.... .--+.+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccc
Confidence 4567889999999999999999987 5577999999999665555544444 678888999987532 113489
Q ss_pred ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
|+|++.-. +-.+..-++..+...||+||.++++.-...-.....-..- -.+-.+.|++.||+..+
T Consensus 145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v-------------f~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV-------------FAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH-------------HHHHHHHHHCTTCEEEE
T ss_pred cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH-------------HHHHHHHHHHcCCChhe
Confidence 99987532 1122245677788899999999997643210000000000 12334667788999999
Q ss_pred EEEeCeE----EEEEEe
Q 019957 319 SKVQQSF----IMFAAQ 331 (333)
Q Consensus 319 ~~~~~~~----~~~~a~ 331 (333)
...-.+| .+++++
T Consensus 210 ~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 210 QITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEE-TTTSTTEEEEEEE
T ss_pred EeccCCCCCCcEEEEEE
Confidence 8775555 555543
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=4.4e-06 Score=71.31 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCcCCCCCeEEEEcc
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRAD 227 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d 227 (333)
+..+.+.++..++..++|||||.|.....++....-...+|+|+.+...+.|+.... ..|. ....+.+..+|
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gd 109 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccC
Confidence 344556677777889999999999988877766544469999999988777765332 2222 13567888888
Q ss_pred CCCCCCCC---CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 228 VCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 228 ~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+.+.++.. ...|+|+++..... ++....|.++...||+|.+++-..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred ccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEECC
Confidence 87644211 35799999876531 233456777778889988876543
No 226
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.6e-06 Score=69.33 Aligned_cols=130 Identities=16% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (333)
|..+...-.++...+...+.+|||+|.|. |..+..++..-+...|...|-++..++..++....+-......+..+.-+
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL 91 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence 33344444455555555678999999995 55666666667788999999999999888876544321112333333333
Q ss_pred CCC--CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 228 VCR--LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 228 ~~~--lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
... .......||+|++...+..-..-..+.+.|.+.|+|.|.-++..|.+.
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 221 112345899999988776544456788999999999999888776653
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.24 E-value=1.4e-05 Score=78.54 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=64.8
Q ss_pred CCCCcHHHHHHHHHhhccc-------CCCeEEEEcCCcCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHH
Q 019957 147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK 211 (333)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~ 211 (333)
.++.+....+.+.+.+... ...+|||.|||+|.++..+.+..+ ...++|+|+++..+..++.++.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3456666777777655321 345899999999999988876542 2578999999999999998876
Q ss_pred hcCcCCCCCeEEEEccCCCC-----CCCCCCcceEEec
Q 019957 212 QDNTILTSNLALVRADVCRL-----PFASGFVDAVHAG 244 (333)
Q Consensus 212 ~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~V~~~ 244 (333)
..+ ...+.+...|.... .-..+.||+|+.+
T Consensus 85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred hcC---CCCceeeecccccccccccccccCcccEEEeC
Confidence 643 22345555554321 1112579999985
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.24 E-value=1.9e-05 Score=79.93 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhC---------------------------------------
Q 019957 149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSG--------------------------------------- 188 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~--------------------------------------- 188 (333)
|..+.+...++....- .++..++|.+||+|.++...+...
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4455566666655443 456799999999999998776521
Q ss_pred ---CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC--CCCcceEEeccccc-cCCC---hHHHHHH
Q 019957 189 ---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAALH-CWPS---PSNAVAE 259 (333)
Q Consensus 189 ---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~-h~~d---~~~~l~~ 259 (333)
....++|+|+++.+++.|++++...|+ ...+.+.++|+.+++.. .++||+|+++--.. .+.+ ...+.++
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~--~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGV--AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 012699999999999999999999886 56789999999887643 35799999974332 2222 2233344
Q ss_pred HHHhc---cCCcEEEEEEecc
Q 019957 260 ISRIL---RSGGVFVGTTFLR 277 (333)
Q Consensus 260 ~~r~L---kpgG~l~i~~~~~ 277 (333)
+.+.+ .+|+.+++.+...
T Consensus 330 lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 330 LGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHhCCCCeEEEEeCCH
Confidence 44444 4899988877643
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.21 E-value=4.8e-06 Score=68.31 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
....+.|+|+|+|-++...+.... +|++++.+|...+.|.+++...| ..++.++.+|+....| ...|+|+|-.
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHH
Confidence 346899999999999988888754 99999999999999999887666 6799999999999887 4689998732
Q ss_pred c--cccCCChHHHHHHHHHhccCCcEEEE
Q 019957 246 A--LHCWPSPSNAVAEISRILRSGGVFVG 272 (333)
Q Consensus 246 v--l~h~~d~~~~l~~~~r~LkpgG~l~i 272 (333)
. .--......+++.+...||-++.++=
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 2 11112334677888888888887764
No 230
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=7.2e-06 Score=67.87 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=84.9
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (333)
+.+...-..-.+++|||+|+|+|.-+...++.| ...|+..|+.+......+-+.+.++ ..+.+...|... .+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---~~ 140 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---SP 140 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---CC
Confidence 333333333468899999999999999999887 5689999999888888777777765 367888777755 36
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
..||+|+.+.++..-+.-.+++.-..+....|-.+++-+|.+.
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 7899999999887656666777744444455666676676654
No 231
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.20 E-value=3.2e-05 Score=68.67 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCeEEEEcCCcCHH-HHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHH-hcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957 167 GGLLVDVSCGSGLF-SRKFAKS-GTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (333)
Q Consensus 167 ~~~vLDiGcG~G~~-~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (333)
+.+|+=||+|.=-+ +..+++. +....++++|+++.+.+.+++... ..++ ..++.++.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L--~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL--SKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc--cCCeEEEecchhccccccccCCEEEE
Confidence 35999999997544 4455543 556689999999999999998877 3444 67899999999877655568999998
Q ss_pred ccccccCC-ChHHHHHHHHHhccCCcEEEEEEe
Q 019957 244 GAALHCWP-SPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 244 ~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.....--. +-.++|..+.+.++||..+++-..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 66655332 456899999999999999998753
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.19 E-value=1.7e-05 Score=73.92 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=81.7
Q ss_pred CeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEecc
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA 245 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~ 245 (333)
.+|||+.||+|..+..++...+ ...|+++|+++.+++.++++++.++ ..++.++++|+..+- ....+||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 5899999999999999988732 3589999999999999999998876 346889999987652 1235799998744
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...|..++..+.+.+++||.|+++-
T Consensus 123 ----fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 ----FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 2456678999999999999999974
No 233
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.19 E-value=1.3e-05 Score=72.29 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=93.6
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
........+.+.++..|||+.++.|.-+..++.... ...+++.|+++..+...++++++.| ..++.....|.....
T Consensus 73 sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~ 149 (283)
T PF01189_consen 73 SSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLD 149 (283)
T ss_dssp HHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHH
T ss_pred ccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeecccccc
Confidence 334555667788899999999999999888888754 5799999999999999999999988 667888878876651
Q ss_pred --CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhc----cCCcEEEEEEecc
Q 019957 233 --FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLR 277 (333)
Q Consensus 233 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~L----kpgG~l~i~~~~~ 277 (333)
.....||.|+. .+++.+-++. .++|+.+.+.+ ||||+++.+|-..
T Consensus 150 ~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 150 PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 22346999996 3444444432 35789999999 9999999998554
No 234
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=1.8e-05 Score=65.32 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=93.7
Q ss_pred hhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHH---HH---HHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 161 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENML---RQ---CYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~---~~---a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
+....++.+|+|+=.|.|++++-++.. ++...|+++-..+... .. .+....+.. ..|...+-.+...++
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~A~~- 118 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLVALG- 118 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCcccccC-
Confidence 445678999999999999999999887 6666787776544310 00 000011111 234444545554444
Q ss_pred CCCCcceEEeccccccC-------CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 019957 234 ASGFVDAVHAGAALHCW-------PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE 306 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~ 306 (333)
..+..|+++....-|-+ ....++.+++.+.|||||++++.+........ . ......++.+...+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~------~--~dt~~~~ri~~a~V~ 190 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG------L--SDTITLHRIDPAVVI 190 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC------h--hhhhhhcccChHHHH
Confidence 44567777653332211 23357899999999999999999876542111 1 112456778999999
Q ss_pred HHHHhCCCcEEEE
Q 019957 307 DLCTSCGLTNYTS 319 (333)
Q Consensus 307 ~ll~~aGf~~v~~ 319 (333)
+..+++||+..-+
T Consensus 191 a~veaaGFkl~ae 203 (238)
T COG4798 191 AEVEAAGFKLEAE 203 (238)
T ss_pred HHHHhhcceeeee
Confidence 9999999987654
No 235
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.16 E-value=3e-05 Score=72.97 Aligned_cols=103 Identities=22% Similarity=0.405 Sum_probs=87.3
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (333)
++|.+|||.-.+...+.+.| ...++-+|+|+-.++....+.... .+.+.+...|...+.|++++||+|+.-+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 89999999999999999987 558999999999888877654321 5678999999999999999999999999998
Q ss_pred cCCCh----------HHHHHHHHHhccCCcEEEEEEec
Q 019957 249 CWPSP----------SNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 249 h~~d~----------~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
++-.+ ...+.++.|+|++||+++..+..
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 87322 24578999999999998888773
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=4.4e-05 Score=70.24 Aligned_cols=138 Identities=17% Similarity=0.082 Sum_probs=98.1
Q ss_pred HHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-----------------------
Q 019957 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----------------------- 190 (333)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------- 190 (333)
...++||..- ..-|..+.+...|..+-+..++..++|-=||+|.++...+..+.+
T Consensus 161 LhkRGyR~~~--g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 161 LHKRGYRVYD--GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhhccccccC--CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 3455555432 223445555666666666666778999999999999988876631
Q ss_pred ---------C-------eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecccc-ccCCCh
Q 019957 191 ---------S-------GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP 253 (333)
Q Consensus 191 ---------~-------~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~ 253 (333)
. .++|+|+++.+++.|+.+....|+ ...|.|.++|+..++.+-+.+|+|+++--. +-+.+.
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv--~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV--GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC--CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 1 277999999999999999999997 788999999999886443789999996432 112222
Q ss_pred ---H----HHHHHHHHhccCCcEEEEEEe
Q 019957 254 ---S----NAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 254 ---~----~~l~~~~r~LkpgG~l~i~~~ 275 (333)
. .+.+.+++.++-.+.+++++.
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 1 334455666777777777663
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.14 E-value=1.9e-05 Score=70.47 Aligned_cols=106 Identities=12% Similarity=0.225 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.....+.+.+.+...++..|||||+|.|.++..+.+.+. +++++|+++...+..++++.. .+++.++.+|+..
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhc
Confidence 345667788888877889999999999999999999984 999999999999999987663 5689999999988
Q ss_pred CCCCC---CCcceEEeccccccCCChHHHHHHHHHhccC
Q 019957 231 LPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRS 266 (333)
Q Consensus 231 lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp 266 (333)
+.... ..-..|+++- .+ .-...++..+...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~Nl--Py-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNL--PY-NISSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEE--TG-TGHHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEe--cc-cchHHHHHHHhhcccc
Confidence 76543 2344555543 22 1223456666553333
No 238
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.12 E-value=1.1e-05 Score=75.12 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
..+++.+.+++...++ .|||+-||.|.++..+++... +|+|+|.++.+++.|+++++.++ ..++.|+.++.+++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccch
Confidence 4455666777776655 899999999999999999865 99999999999999999999988 57899998877543
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.12 E-value=4.4e-05 Score=61.40 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=70.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (333)
.+..+|+|+|||.|+++..++. . ++.+|+++|.++...+.+.++.+..+.....++.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5677999999999999999998 4 577999999999999999988776542223456666666544321 44667
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+++..+.-.-+. ..+|+...+ ++-.+++..|
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEEcC
Confidence 777655433322 233444433 6666555544
No 240
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.11 E-value=2e-05 Score=66.16 Aligned_cols=113 Identities=13% Similarity=0.211 Sum_probs=86.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PF 233 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~ 233 (333)
....+.+. .++++||+||-|.|-....+.++-|. +-+.+|..+..++..++.--. ...++..+.+-.++. .+
T Consensus 92 ha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 92 HALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTL 165 (271)
T ss_pred HHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccc
Confidence 33333333 56889999999999888888887654 667899999998877764222 245777777776653 25
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+++.||-|+-...-+|..|...+.+.+.++|||+|++-...
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 68899999987776888899999999999999999986643
No 241
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=4.5e-05 Score=67.63 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=102.3
Q ss_pred HHHHHHHhhcc----cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH---HhcCc-----------
Q 019957 154 EFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDNT----------- 215 (333)
Q Consensus 154 ~~~~~~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~~----------- 215 (333)
+++.+..+.++ ....+||--|||.|+++..++..|+ .+-|=|+|--|+-...=.+ +..+-
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 44445444443 2345899999999999999999988 6667788776653332222 11110
Q ss_pred ------------------C-----CCCCeEEEEccCCCC-C--CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcE
Q 019957 216 ------------------I-----LTSNLALVRADVCRL-P--FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV 269 (333)
Q Consensus 216 ------------------~-----~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~ 269 (333)
+ .......-.||+.+. + -..+.||+|+..+.+.--.+....|+.|..+|||||+
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGv 291 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGV 291 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcE
Confidence 0 011112233555432 1 1234799999888888777888999999999999999
Q ss_pred EEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957 270 FVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 270 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~ 320 (333)
.+-..|..+...... +..+...--++.+++..+.+..||++++..
T Consensus 292 WiNlGPLlYHF~d~~------g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 292 WINLGPLLYHFEDTH------GVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred EEeccceeeeccCCC------CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 988776654111100 001123445789999999999999998753
No 242
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.08 E-value=1.9e-06 Score=72.48 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CC--
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA-- 234 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~-- 234 (333)
.+.++||+||++|.++..+.+.+ +...|+|+|+.+.. ..+++..+++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence 45799999999999999999987 44699999997750 0345666666664321 11
Q ss_pred CCCcceEEeccccccCCC----h-------HHHHHHHHHhccCCcEEEEEEec
Q 019957 235 SGFVDAVHAGAALHCWPS----P-------SNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d----~-------~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
.+.||+|++.....-..+ . ...+.-+...|+|||.+++....
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999999774333322 1 23455556789999999997755
No 243
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.08 E-value=1.5e-05 Score=66.33 Aligned_cols=108 Identities=19% Similarity=0.347 Sum_probs=76.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc----CCCCCeEEEEccCCC-CCCCCCCcceE
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LPFASGFVDAV 241 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~-lp~~~~~fD~V 241 (333)
...+.|||||.|.++..|+..+|+..+.|+||.-..-++.++++....- ...+++.+...+... +| +-|..-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhhc
Confidence 3469999999999999999999999999999999999999888765321 013456666665543 23 223222
Q ss_pred EeccccccCCChH-------------HHHHHHHHhccCCcEEEEEEecc
Q 019957 242 HAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 242 ~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
..+-.+..++||. ..+.+..-+|++||.++..+-..
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 2333333445552 56888999999999999887544
No 244
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.2e-05 Score=64.63 Aligned_cols=100 Identities=23% Similarity=0.246 Sum_probs=72.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CCC
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS 235 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~ 235 (333)
.++..|+|+|+..|.++..+++.. ....|+|+|+.+-.. .+++.++++|+..-+ +..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 457899999999999999998874 334599999976321 567999999997643 334
Q ss_pred CCcceEEecccc--------ccCCCh---HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 236 GFVDAVHAGAAL--------HCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 236 ~~fD~V~~~~vl--------~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
..+|+|++-..= +|.... ..++.-+..+|+|||.+++-++...
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 557999974332 221111 2456667789999999999886543
No 245
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.05 E-value=0.0003 Score=59.66 Aligned_cols=136 Identities=11% Similarity=0.082 Sum_probs=99.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (333)
....+.+++.. +.++.||||-.+++..+|.+.++...+++.|+++.-++.|.+++...++ .+.++...+|....--
T Consensus 6 RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l--~~~i~vr~~dgl~~l~ 81 (226)
T COG2384 6 RLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL--SERIDVRLGDGLAVLE 81 (226)
T ss_pred HHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC--cceEEEeccCCccccC
Confidence 34556666654 4569999999999999999999888999999999999999999999886 7889998888743212
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG 313 (333)
.+..+|+|+..++=.- -....|++-.+.|+.=-++++... -...+++++|..++
T Consensus 82 ~~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQPn------------------------~~~~~LR~~L~~~~ 135 (226)
T COG2384 82 LEDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQPN------------------------IHTYELREWLSANS 135 (226)
T ss_pred ccCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEECCC------------------------CCHHHHHHHHHhCC
Confidence 3457999886554221 123456666666654334555321 13468999999999
Q ss_pred CcEEEE
Q 019957 314 LTNYTS 319 (333)
Q Consensus 314 f~~v~~ 319 (333)
|.++.+
T Consensus 136 ~~I~~E 141 (226)
T COG2384 136 YEIKAE 141 (226)
T ss_pred ceeeee
Confidence 998775
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00055 Score=57.17 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=98.0
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcc
Q 019957 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 239 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 239 (333)
+..++.+||=+|+.+|.....++.--+...++++|+|+...+..-...+. .+|+--+.+|+.... .--+..|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhccccc
Confidence 35678999999999999999999886567899999999776665555544 568888888886532 1134688
Q ss_pred eEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957 240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 316 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~ 316 (333)
+|+. .+..|. -+..++...||+||.++++.-.+.-....- .+.. -.+-..-|++.||++
T Consensus 148 viy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-p~~v------------f~~ev~kL~~~~f~i 209 (231)
T COG1889 148 VIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-PEEV------------FKDEVEKLEEGGFEI 209 (231)
T ss_pred EEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-HHHH------------HHHHHHHHHhcCcee
Confidence 8875 334443 457788899999998777654332111111 0000 123335677889999
Q ss_pred EEEEEeCeE----EEEEEe
Q 019957 317 YTSKVQQSF----IMFAAQ 331 (333)
Q Consensus 317 v~~~~~~~~----~~~~a~ 331 (333)
.+...-.+| ++++++
T Consensus 210 ~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 210 LEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eEEeccCCcccceEEEEEe
Confidence 998776666 555554
No 247
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.99 E-value=7.4e-05 Score=67.84 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=68.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++.++|||||++|.++..+.+.+. .|+++|..+ +..... . .+++..+..|........+.+|.++|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~----~-----~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLM----D-----TGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhh----C-----CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 4688999999999999999999975 999999654 222222 2 678888888876653236789999997
Q ss_pred cccccCCChHHHHHHHHHhccCC
Q 019957 245 AALHCWPSPSNAVAEISRILRSG 267 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~Lkpg 267 (333)
.+ ..|.++.+-+.+.|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 66 56889999999999776
No 248
>PRK11827 hypothetical protein; Provisional
Probab=97.98 E-value=3.9e-06 Score=55.94 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=36.8
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (333)
.+++.||.|+++|..... ...+.|..|+..|++++|++.++.++
T Consensus 6 LeILaCP~ckg~L~~~~~---------~~~Lic~~~~laYPI~dgIPVlL~de 49 (60)
T PRK11827 6 LEIIACPVCNGKLWYNQE---------KQELICKLDNLAFPLRDGIPVLLETE 49 (60)
T ss_pred HhheECCCCCCcCeEcCC---------CCeEECCccCeeccccCCccccCHHH
Confidence 468899999999976432 14799999999999999999999863
No 249
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.93 E-value=4.2e-05 Score=61.47 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=51.0
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
++||||||.|.++..+++.++..+++++|+++.+.+.++++++.++ ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence 4899999999999999999876789999999999999999988766 3468888877654
No 250
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.92 E-value=0.0002 Score=64.85 Aligned_cols=142 Identities=17% Similarity=0.224 Sum_probs=96.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH--Hh--cCcCCCCCeEEEEccCCCC-CCCCCCcceE
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQ--DNTILTSNLALVRADVCRL-PFASGFVDAV 241 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~--~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V 241 (333)
..+||-+|.|.|.-++.+.+.-...+++-+|.+|.|++.+++.. .. .|.-..++++++..|+.+. .-..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 45899999999999999988633568999999999999999432 22 1222357899999998664 2234589999
Q ss_pred EeccccccCCCh----------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957 242 HAGAALHCWPSP----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 311 (333)
Q Consensus 242 ~~~~vl~h~~d~----------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 311 (333)
+.. ++|| ..+...+.+.|+++|.+++..-..+..... | ..+..-+++
T Consensus 370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v---------------f---w~i~aTik~ 426 (508)
T COG4262 370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV---------------F---WRIDATIKS 426 (508)
T ss_pred EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce---------------e---eeehhHHHh
Confidence 864 3444 367788899999999999976444311110 0 135567788
Q ss_pred CCCcEEEE----EEeCeEEEEEEe
Q 019957 312 CGLTNYTS----KVQQSFIMFAAQ 331 (333)
Q Consensus 312 aGf~~v~~----~~~~~~~~~~a~ 331 (333)
+||.+.-. -+++.|-++.+.
T Consensus 427 AG~~~~Pyhv~VPTFGeWGf~l~~ 450 (508)
T COG4262 427 AGYRVWPYHVHVPTFGEWGFILAA 450 (508)
T ss_pred CcceeeeeEEecCcccccceeecc
Confidence 88876442 235555444443
No 251
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.92 E-value=1.7e-05 Score=66.83 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957 151 PDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (333)
++.+...+....... ....|+|.-||.|..+..++..++ .|+++|+++.-+..|+++++..|+ ..+++|++||+.
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~l 153 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFL 153 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEechHH
Confidence 444444444443322 345899999999999999999988 999999999999999999999998 569999999997
Q ss_pred CC----CCCCCCcceEEecc
Q 019957 230 RL----PFASGFVDAVHAGA 245 (333)
Q Consensus 230 ~l----p~~~~~fD~V~~~~ 245 (333)
++ .+....+|+|+.+.
T Consensus 154 d~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 154 DLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred HHHHHHhhhhheeeeeecCC
Confidence 64 34445577777653
No 252
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=8e-06 Score=53.78 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=38.3
Q ss_pred ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (333)
..+++.||.|.++|...... +.+.|+.|+..|++.+|++.++..+
T Consensus 5 LLeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 5 LLEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred hheeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchh
Confidence 35789999999998765542 4899999999999999999999863
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.76 E-value=0.00021 Score=64.53 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=70.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (333)
+.+.+.+.+...+++.++|.-+|.|..+..+.+..+...|+|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHH
Confidence 345566667777888999999999999999998865579999999999999999988653 458999999998753
Q ss_pred ----CCCCCcceEEec
Q 019957 233 ----FASGFVDAVHAG 244 (333)
Q Consensus 233 ----~~~~~fD~V~~~ 244 (333)
....++|.|++.
T Consensus 84 ~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 84 HLDELLVTKIDGILVD 99 (305)
T ss_pred HHHhcCCCcccEEEEe
Confidence 123578998874
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.001 Score=57.18 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=90.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE-EEccCCCCC---CCCCCcc
Q 019957 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP---FASGFVD 239 (333)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp---~~~~~fD 239 (333)
..++..+||||+.||.|+..+.++| ...|+++|..-..+..--+ . .+++.. ...++..+. +. +..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---~-----d~rV~~~E~tN~r~l~~~~~~-~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---N-----DPRVIVLERTNVRYLTPEDFT-EKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---c-----CCcEEEEecCChhhCCHHHcc-cCCC
Confidence 4568899999999999999999997 5699999998766654332 1 445443 345555442 22 3678
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh----hhccCCCCCHHHHHHHHHhCCCc
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER----ILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
++++.-++- ....+|..+..++++++.++...-... .. ++..... .....+---..++.+++.+.||+
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQF----Ea-gr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~ 218 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQF----EA-GREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQ 218 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchh----hh-hhhhcCcCceecCcchHHHHHHHHHHHHhhcCcE
Confidence 888865544 346779999999999998877542111 00 1111110 00112223357888999999999
Q ss_pred EEEEE
Q 019957 316 NYTSK 320 (333)
Q Consensus 316 ~v~~~ 320 (333)
+....
T Consensus 219 ~~gl~ 223 (245)
T COG1189 219 VKGLI 223 (245)
T ss_pred EeeeE
Confidence 87753
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.64 E-value=1.4e-05 Score=60.81 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=42.6
Q ss_pred EEEcCCcCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-CCCCCcceEEecc
Q 019957 171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVDAVHAGA 245 (333)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD~V~~~~ 245 (333)
||||+..|..+..+++.... .+++++|..+. .+..++.+++.++ ..++.++.++..+. + +..++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~--~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL--SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC--CCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 69999999988887765322 27999999985 2333333333333 45799999998643 2 3357999999865
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
. |..+.....+..+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 111233466888889999999998864
No 256
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=7e-05 Score=70.74 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=65.1
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
.+.....+.++.....+..+||+-||||.++..+++... .|+|+++++.+++.|+.+...+| ..|.+|+++-+++
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhh
Confidence 445557777888877788999999999999999998754 99999999999999999999888 6799999996655
Q ss_pred C
Q 019957 231 L 231 (333)
Q Consensus 231 l 231 (333)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 3
No 257
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.54 E-value=0.00079 Score=62.22 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=85.2
Q ss_pred hcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCC
Q 019957 162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 237 (333)
+.++++.+|||..+..|.=+.+++..- ....+++.|.+...++..+.++.+.| ..+..+...|..++| +.. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence 467889999999999987666665542 23489999999999999999999988 567777888887665 444 8
Q ss_pred cceEEe----cc--ccccC----------------CChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 238 VDAVHA----GA--ALHCW----------------PSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 238 fD~V~~----~~--vl~h~----------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
||-|+. ++ ++.-- .-.+++|..+...+++||+|+.+|-...
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 999985 33 33211 0124677788899999999999986654
No 258
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.46 E-value=0.00067 Score=60.96 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHhhcccC-----CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEcc
Q 019957 154 EFKMAQEYFKSAQ-----GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRAD 227 (333)
Q Consensus 154 ~~~~~~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d 227 (333)
.+..+.+++.... ..++||||+|....-..|.....+.+++|+|+++..++.|++++..+ ++ ..+|.++...
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L--~~~I~l~~~~ 162 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL--ESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc--ccceEEEEcC
Confidence 3455566665322 35799999998754322322211449999999999999999999988 76 6788887653
Q ss_pred CCC-----CCCCCCCcceEEeccccccC
Q 019957 228 VCR-----LPFASGFVDAVHAGAALHCW 250 (333)
Q Consensus 228 ~~~-----lp~~~~~fD~V~~~~vl~h~ 250 (333)
-.. +-..++.||+.+|+--++..
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred CccccchhhhcccceeeEEecCCccccC
Confidence 321 11234689999998766654
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.40 E-value=0.00095 Score=53.01 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=58.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEeccc-ccc-----CCCh---HHHHHHH
Q 019957 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAA-LHC-----WPSP---SNAVAEI 260 (333)
Q Consensus 192 ~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~v-l~h-----~~d~---~~~l~~~ 260 (333)
+|+|+|+-+.+++..++++++.++ ..++.++..+=+.+. .+.+++|+++.+.. |-. +..+ ..+|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999875 568999998887765 22348999887532 211 1233 3678888
Q ss_pred HHhccCCcEEEEEEeccc
Q 019957 261 SRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 261 ~r~LkpgG~l~i~~~~~~ 278 (333)
.++|+|||++.++.+...
T Consensus 79 l~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHEEEEEEEEEEE--ST
T ss_pred HHhhccCCEEEEEEeCCC
Confidence 899999999999886543
No 260
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.0013 Score=54.23 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCCC--------CCC
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PFA 234 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~~ 234 (333)
.++.+|||+||..|.++..+.++ +|++-|.|+|+-.- . +..++.++++ |+.+. ..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E-----PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c-----CCCCcccccccccCCHHHHHHHHHhCC
Confidence 46889999999999999988887 58889999997321 1 1445666666 66542 134
Q ss_pred CCCcceEEecccccc----CCChH-------HHHHHHHHhccCCcEEEEEEeccc
Q 019957 235 SGFVDAVHAGAALHC----WPSPS-------NAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h----~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+...|+|++...-.- +.|.. .++.-....++|+|.++.-.+...
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 678999998543211 11222 234444566789999999887653
No 261
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.37 E-value=0.0001 Score=51.29 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=30.4
Q ss_pred ccCeecccCCCcccccc---CC----------------CCccccccccCceeeCCCCccccCcCC
Q 019957 57 EGDLFSCPICYEPLIRK---GP----------------TGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~---~~----------------~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (333)
.-++++||.|+++|... .. ...-...+..|.+.|++||+.|++.+|
T Consensus 4 llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 4 LLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred HHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 45789999999988000 00 000012566789999999999999876
No 262
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.36 E-value=0.00081 Score=63.78 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=79.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcceEE
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVH 242 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~ 242 (333)
..|+|..+|.|.|+.+|.+. .|..+..-+ +.+....+ .|+ |. +..|. +.++.-+.+||+|.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIyd----RGL-----IG-~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYD----RGL-----IG-VYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhh----ccc-----ch-hccchhhccCCCCcchhhee
Confidence 45999999999999999865 244444333 23332222 121 11 22233 44565578999999
Q ss_pred eccccccCCC---hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 243 AGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 243 ~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
+.+++.+..+ ...+|-|+.|+|+|||.+++.+... ..++++.++.+..++....
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------------HHHHHHHHHHhCcceEEEE
Confidence 9998877653 4688999999999999999977321 1357778888888876554
Q ss_pred EE
Q 019957 320 KV 321 (333)
Q Consensus 320 ~~ 321 (333)
..
T Consensus 490 d~ 491 (506)
T PF03141_consen 490 DT 491 (506)
T ss_pred ec
Confidence 33
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.28 E-value=0.0008 Score=57.04 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=58.7
Q ss_pred HHHhhcccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (333)
+.+++-..++..|+|+|.-.|..+..++.. +...+|+|+|++....... ..+.... .++|++++||..+..
T Consensus 24 ~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~--~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 24 YQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM--SPRITFIQGDSIDPEI 99 (206)
T ss_dssp HHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHH
T ss_pred HHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc--cCceEEEECCCCCHHH
Confidence 334444445679999999998777655542 3567999999964322111 1111111 479999999987642
Q ss_pred ---CC----CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 233 ---FA----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 233 ---~~----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
.. ...-.+|+. .+=|...+-.+.|+....++++|+++++.+..
T Consensus 100 ~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 100 VDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp HHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 11 122334443 33233345577788899999999999997754
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.25 E-value=0.0008 Score=58.50 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=82.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (333)
+.+|+|||||.--++.......+...++|+|++..+++.....+...+ ...++...|+..-+ +....|+.++.-+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhHHHH
Confidence 679999999998888877776667799999999999999999887764 46777777886653 2567999999888
Q ss_pred cccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957 247 LHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 320 (333)
Q Consensus 247 l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~ 320 (333)
++-+.... ..++-+ ..++ .=.++++.|.... ++.-. .+.. .-..+++.++...|+.+-+..
T Consensus 181 lp~le~q~~g~g~~ll-~~~~-~~~~vVSfPtrSL------~gR~~-gm~~----~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 181 LPCLERQRRGAGLELL-DALR-SPHVVVSFPTRSL------GGRNK-GMEQ----TYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHHHHSTTHHHHHH-HHSC-ESEEEEEEES-------------T-THHH----CHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHHHHhcchHHHHH-HHhC-CCeEEEecccccc------ccCcc-cccc----CHHHHHHHhcccCCceeeeee
Confidence 77654332 112222 2222 2345555554421 11100 0000 113577888888888855433
No 265
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00076 Score=60.89 Aligned_cols=112 Identities=15% Similarity=0.065 Sum_probs=73.8
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC----CCCCCCCCC
Q 019957 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGF 237 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~ 237 (333)
.....++|||+|.|.|.-+.++....|+ .+++.++.|+..-+.......... .....+...|+ ..+|. ...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp~-ad~ 185 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLPA-ADL 185 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCCc-cce
Confidence 3445678999999999888888777765 357888888876655554433222 11222333333 33342 346
Q ss_pred cceEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEeccc
Q 019957 238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
|++|+..+-|-|..++. ..++.+..++.|||.|++++...+
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 77777666665554443 468888899999999999998764
No 266
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0025 Score=50.53 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=83.6
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (333)
+...+.++.++.++...+.++.+|+|+|.|......++.+ -...+|+|+++-.+.+++-..-+.|. .....|..-|+
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~Rkdl 131 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDL 131 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhh
Confidence 3345566777778877777899999999999999998887 34789999999999888877666665 66788888898
Q ss_pred CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
....+.+-.+-+|+ .+=.-++|. -.++..-|..|..++-.-+
T Consensus 132 wK~dl~dy~~vviF--gaes~m~dL---e~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIF--GAESVMPDL---EDKLRTELPANTRVVACRF 173 (199)
T ss_pred hhccccccceEEEe--ehHHHHhhh---HHHHHhhCcCCCeEEEEec
Confidence 88776654444443 332222333 2344445666777666543
No 267
>PRK10742 putative methyltransferase; Provisional
Probab=97.16 E-value=0.003 Score=55.11 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHhhcccCCC--eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc------CcCCCCCeEEEEcc
Q 019957 156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRAD 227 (333)
Q Consensus 156 ~~~~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~~~~~~~i~~~~~d 227 (333)
+.+.+.+...++. +|||.-+|+|..+..++..|. +|+++|.++......++.+... +.....++.++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4555666655655 899999999999999999875 7999999999988888877763 11001568888888
Q ss_pred CCCC-CCCCCCcceEEecccccc
Q 019957 228 VCRL-PFASGFVDAVHAGAALHC 249 (333)
Q Consensus 228 ~~~l-p~~~~~fD~V~~~~vl~h 249 (333)
.... .-...+||+|++-=.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 8653 212347999998766665
No 268
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.01 E-value=0.072 Score=46.26 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCC-CCCcceEE
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA-SGFVDAVH 242 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~-~~~fD~V~ 242 (333)
..+++||-+|=.. ..+..++..+...+++.+|+++..+++.++..++.|+ .++.+..|+.+ +|-. .++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEEE
Confidence 3578999998333 3444445455567999999999999999999988874 49999999955 5522 57999999
Q ss_pred eccccccCCChHHHHHHHHHhccCCc-EEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957 243 AGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 321 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~ 321 (333)
..-. +-..-..-++......||..| ..++.-...... ... ..++++.+.+.||.+.....
T Consensus 118 TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~~~-------------~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 118 TDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----PDK-------------WLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp E----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHH-------------HHHHHHHHHTS--EEEEEEE
T ss_pred eCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----HHH-------------HHHHHHHHHHCCcCHHHHHh
Confidence 7311 000011457788888898656 444433222110 000 13677888899998766543
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.00 E-value=0.0016 Score=58.82 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=61.5
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (333)
+.+.+.+.+.+++.++|.--|.|..+..+.+..+...++|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHHH
Confidence 4455667777888999999999999999999877789999999999999999877653 468999999998764
Q ss_pred --C-CCCCcceEEe
Q 019957 233 --F-ASGFVDAVHA 243 (333)
Q Consensus 233 --~-~~~~fD~V~~ 243 (333)
. .-.++|.|++
T Consensus 86 ~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 86 KELNGINKVDGILF 99 (310)
T ss_dssp HHTTTTS-EEEEEE
T ss_pred HHccCCCccCEEEE
Confidence 2 2347888876
No 270
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.96 E-value=0.013 Score=54.84 Aligned_cols=148 Identities=12% Similarity=0.131 Sum_probs=82.9
Q ss_pred CCeEEEEcCCcCHHHHHHH--------Hh-------CCCCeEEEEeCCHHHHHHHHHHHHhc--------C-cC-CCCCe
Q 019957 167 GGLLVDVSCGSGLFSRKFA--------KS-------GTYSGVVALDFSENMLRQCYDFIKQD--------N-TI-LTSNL 221 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~g~D~s~~~~~~a~~~~~~~--------~-~~-~~~~i 221 (333)
..+|+|+|||+|.++..+. ++ -|..+|+.-|.-.+-....-+.+... . +. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5589999999997765442 21 13457777776432222221111110 0 00 00011
Q ss_pred EEE---EccCCCCCCCCCCcceEEeccccccCCCh--------------------------------------HHHHHHH
Q 019957 222 ALV---RADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI 260 (333)
Q Consensus 222 ~~~---~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~~~ 260 (333)
-|+ .+.+..--|++++.++++++..||++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 23443334778999999999999987531 1233334
Q ss_pred HHhccCCcEEEEEEecccCCC---c-----ch---hhHHHHH-------------hhhccCCCCCHHHHHHHHHhCCC
Q 019957 261 SRILRSGGVFVGTTFLRYTSS---T-----SL---TGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 261 ~r~LkpgG~l~i~~~~~~~~~---~-----~~---~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
.+-|.|||++++....+.+.. . .| +...|.. ...-..++.+.+|+++.+++.|-
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gs 301 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGS 301 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCC
Confidence 567889999999987764211 0 01 1111111 11144667889999999998885
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.95 E-value=0.012 Score=53.87 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=68.2
Q ss_pred cccCCCeEEEEcCC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-CCCCCCCCCCcce
Q 019957 163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVDA 240 (333)
Q Consensus 163 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~~fD~ 240 (333)
...++.+|+=+|+| .|..+..+++.. ..+|+++|.+++-++.|++. ..-.++... ......-.+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l---------GAd~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL---------GADHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh---------CCcEEEEcCCchhhHHhHhhCcE
Confidence 45678899999987 357788888854 26999999999999999874 222334332 2122211234999
Q ss_pred EEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
|+..-. ...+....+.|++||.+++.-..
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 987654 34578888999999999997765
No 272
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.85 E-value=0.024 Score=55.14 Aligned_cols=147 Identities=18% Similarity=0.108 Sum_probs=101.3
Q ss_pred cchhHHHHhhHHhhccc-----CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC----CCeEEEEeCC
Q 019957 129 PFVSFLYERGWRQNFNR-----SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS 199 (333)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s 199 (333)
+.++..|+...+..... +.++.+....+.+.+.+.+.+..+|.|..||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 45556666655544322 44788999999999999887777999999999988776655421 2579999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C----CCCCcceEEeccccc---cC-------C-------------
Q 019957 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAALH---CW-------P------------- 251 (333)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~V~~~~vl~---h~-------~------------- 251 (333)
+.....++.++--.|+. ..+....+|-..-| . ..+.||+|+++--+. +. .
T Consensus 224 ~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 99999999988777642 13455555543333 2 336799988742221 11 0
Q ss_pred -Ch-HHHHHHHHHhccCCcEEEEEEecc
Q 019957 252 -SP-SNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 252 -d~-~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
.. ...+..+...|+|||+.-+..+..
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 01 467899999999999776666543
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.81 E-value=0.015 Score=50.91 Aligned_cols=110 Identities=16% Similarity=0.054 Sum_probs=70.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEccCCCC---CCCCCC-cc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRL---PFASGF-VD 239 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~l---p~~~~~-fD 239 (333)
...|||+|+|+|.-+..++... ..+|.-.|+.. .+.....+...++.. ....+.+...+.... .+.... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4579999999997776666643 45888888644 222333222211110 011333333333322 122334 99
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+|+++.++.+-..+..++.-++..|..+|.+++..+.+.
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999999988888889999999999998888776654
No 274
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.80 E-value=0.0012 Score=53.18 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHHhcCcCCCCCeEEEEccCC-CCCCCCCCcceEEec
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR-QCYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHAG 244 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~-~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~V~~~ 244 (333)
+.+.|-+|...=+.=......| ...+..+|.++-.+. ..+.+ -..+...|+. +..-..++||++.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr----------~ssi~p~df~~~~~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDR----------LSSILPVDFAKNWQKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCcccccc----------cccccHHHHHHHHHHhhccchhhhee
Confidence 4567777777544444444444 557888886542111 01111 0111122221 111124689999999
Q ss_pred cccccCC-----Ch------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 245 AALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 245 ~vl~h~~-----d~------~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+++||+. || .+.+.++.++|||||.|++..|...
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 9999973 33 3678899999999999999999875
No 275
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.011 Score=52.72 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=69.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
+.....+.+.+.+++..+|.--|.|..+..+.+.++. ..++|+|.++.+++.|++++... ..++.++.+.+.++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~ 86 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLA 86 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHH
Confidence 3455666778888899999999999999999998753 46999999999999999998775 458999999887653
Q ss_pred -----CCCCCcceEEe
Q 019957 233 -----FASGFVDAVHA 243 (333)
Q Consensus 233 -----~~~~~fD~V~~ 243 (333)
..-+++|.|+.
T Consensus 87 ~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 87 EALKELGIGKVDGILL 102 (314)
T ss_pred HHHHhcCCCceeEEEE
Confidence 22357787775
No 276
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.71 E-value=0.024 Score=52.40 Aligned_cols=149 Identities=20% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh--------C--------CCCeEEEEeCCHHHHHHHHHHHHhcC--cCCCCCe--EEEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSENMLRQCYDFIKQDN--TILTSNL--ALVR 225 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~~~i--~~~~ 225 (333)
..-+|+|+||..|.++..+... + |..+|+--|.-.+-....-+.+.... ....+++ .-+-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3458999999999988755431 1 22478888864322211111111100 0001222 3344
Q ss_pred ccCCCCCCCCCCcceEEeccccccCCC-h-----------------------H---------------HHHHHHHHhccC
Q 019957 226 ADVCRLPFASGFVDAVHAGAALHCWPS-P-----------------------S---------------NAVAEISRILRS 266 (333)
Q Consensus 226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d-~-----------------------~---------------~~l~~~~r~Lkp 266 (333)
+.+..--|++++.|+++++..||++.. | . .+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 666554577999999999999998742 1 1 123334567889
Q ss_pred CcEEEEEEecccCCCc---------chhhHHHHH-------------hhhccCCCCCHHHHHHHHHhCCC
Q 019957 267 GGVFVGTTFLRYTSST---------SLTGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 267 gG~l~i~~~~~~~~~~---------~~~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
||++++..+.+..... ..+...|.. ...-..++.+.+|++..+++.|-
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence 9999999987764110 111222221 01144567889999999988873
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.025 Score=51.88 Aligned_cols=115 Identities=20% Similarity=0.166 Sum_probs=81.6
Q ss_pred hhcccCCCeEEEEcCCcCHHHHHHHHhCCC----CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---
Q 019957 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--- 233 (333)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--- 233 (333)
.+...++.+|||..+..|.=+..+.+.... ..+++=|.+...+...+..+.... .+++.+...|+...|-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence 345678999999999999988888776432 279999999998888888775544 4566666666655441
Q ss_pred ------CCCCcceEEec------cccccCCCh-----------------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957 234 ------ASGFVDAVHAG------AALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 234 ------~~~~fD~V~~~------~vl~h~~d~-----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
....||-|++. .++.+-++. ..+|+.-.++||+||.++.+|-...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 23469988862 333333222 2467788899999999999986543
No 278
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=96.63 E-value=0.001 Score=40.13 Aligned_cols=36 Identities=19% Similarity=0.491 Sum_probs=24.3
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
+.++||.|+..+...... ++ .....++|++|++.|.
T Consensus 1 M~i~CP~C~~~f~v~~~~---l~-~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 1 MIITCPNCQTRFRVPDDK---LP-AGGRKVRCPKCGHVFR 36 (37)
T ss_pred CEEECCCCCceEEcCHHH---cc-cCCcEEECCCCCcEee
Confidence 468999999976443320 11 1124899999999884
No 279
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.56 E-value=0.1 Score=46.45 Aligned_cols=160 Identities=8% Similarity=-0.031 Sum_probs=95.2
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C--
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-- 231 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-- 231 (333)
+.+.+.+... ...|+.+|||.=.....+.. .. .+..+|++ ++.++.=++.+.+.+.....+..++..|+.. +
T Consensus 72 ~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 72 DFLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHhcC-CcEEEEeCCccccHHHhcCC-CC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 3444444433 34799999998655555532 12 34455555 4556555566665443224678888889862 1
Q ss_pred -----CCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHH-----HhhhccCC
Q 019957 232 -----PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLR-----ERILQNYN 298 (333)
Q Consensus 232 -----p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~-----~~~~~~~~ 298 (333)
.|....--++++-+++.+++.. .++|+.+.+...||+.+++.....-... .....+... ........
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVF 227 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhccccccccc
Confidence 1222233467778888888654 4788888888889998888654431110 000011111 11123445
Q ss_pred CCCHHHHHHHHHhCCCcEEEE
Q 019957 299 YLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 299 ~~t~~~l~~ll~~aGf~~v~~ 319 (333)
.++.+++..+|++.||+....
T Consensus 228 ~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 228 GIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred CCChhhHHHHHHHCCCeeecC
Confidence 678999999999999998763
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.34 E-value=0.042 Score=53.44 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=69.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-----------C
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L 231 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------l 231 (333)
..++.+|+=+|+|. |..+...++.. +.+|+++|.++..++.+++. +.+++..+..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 34688999999998 77777777664 34899999999999888872 22322211111 0
Q ss_pred --C--------CCC--CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 232 --P--------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 232 --p--------~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
. +.+ +.+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3699999877655545565556999999999999887654
No 281
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.33 E-value=0.081 Score=49.26 Aligned_cols=99 Identities=23% Similarity=0.192 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C-----CCCC-C
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFAS-G 236 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~~~-~ 236 (333)
.++.+|+=+|||. |.++..+++.....+++.+|.++..++.|++... ...+.....+ . .... .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---------~~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---------ADVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---------CeEeecCccccHHHHHHHHhCCC
Confidence 3444899999998 8888888887667799999999999999988432 2222222111 0 1112 3
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
.+|+++-... ....+..+.+++++||.+++.-....
T Consensus 238 g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 238 GADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 6999985433 23468999999999999988776544
No 282
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.20 E-value=0.02 Score=50.35 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-CCCCCcceEE
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVH 242 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~ 242 (333)
..+..|+-+| -.-..+.+++-.+-..++..+|+++..+....+..++.| ..++..+.-|+.+ +| -..++||+++
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcccChHHHHhhCCeee
Confidence 4577899998 444555555555545689999999999999999888887 6678888889865 34 1146899987
Q ss_pred eccccccCCChHHHHHHHH-------HhccCC---cEEEEEEe
Q 019957 243 AGAALHCWPSPSNAVAEIS-------RILRSG---GVFVGTTF 275 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~-------r~Lkpg---G~l~i~~~ 275 (333)
.||...+..++ ..||.- |++.++..
T Consensus 227 --------TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 227 --------TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred --------cCchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 46655444443 455544 77777653
No 283
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.085 Score=47.63 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=71.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc--CCCC------CC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRL------PF 233 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~l------p~ 233 (333)
..+.+.+||-+|+|. |..+...++.....+|+.+|+++..++.|++ +... .+...... ...+ ..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~------~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT------VTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe------EEeeccccccHHHHHHHHHhhc
Confidence 346788999999997 8888777777657799999999999999998 3221 11111110 0110 12
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
....+|+.+....+ ...++.....++.||.+++......
T Consensus 239 g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 23458888865443 3457778889999999888886655
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.09 E-value=0.028 Score=48.81 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=52.2
Q ss_pred HHHHhhcccCC--CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH---hcCc---CCCCCeEEEEccC
Q 019957 157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK---QDNT---ILTSNLALVRADV 228 (333)
Q Consensus 157 ~~~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~---~~~~~i~~~~~d~ 228 (333)
.+.+.....++ .+|||.-+|-|.-+..++..|. +|+++|-|+-+....+.-+. .... +...+++++.+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 44455544443 4899999999999999888775 99999999976555554332 2110 0024789999998
Q ss_pred CC-CCCCCCCcceEEecccccc
Q 019957 229 CR-LPFASGFVDAVHAGAALHC 249 (333)
Q Consensus 229 ~~-lp~~~~~fD~V~~~~vl~h 249 (333)
.+ +..++.+||+|.+.-.+.|
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 66 4555789999998766665
No 285
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.07 E-value=0.026 Score=48.63 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=70.2
Q ss_pred hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCC
Q 019957 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 237 (333)
+..+++.+||-+|+++|.....+... +|..-|+++|+|...=+......+. .+|+--+.-|+.... ..-.-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 34678999999999999999888886 7778899999997533332222222 557766777775521 11235
Q ss_pred cceEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEec
Q 019957 238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
.|+|++. +..|. .+.-++...||+||.+++..-.
T Consensus 227 VDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 227 VDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 6777653 33333 2334566789999999987643
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.99 E-value=0.11 Score=49.10 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=69.3
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-----C-CC-
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----L-PF- 233 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----l-p~- 233 (333)
....++.+||.+|+|. |..+..+++.....+++++|.++..++.+++.. ...++...-.+ + .+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence 3445678999999988 888888888753346999999999888887631 12222111110 1 11
Q ss_pred CCCCcceEEeccc-----------cccC----CChHHHHHHHHHhccCCcEEEEEEe
Q 019957 234 ASGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
....+|+|+-.-. +.|. .++...+.++.+.|+++|.+++...
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 1236898876421 1222 4556789999999999999988753
No 287
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.98 E-value=0.0086 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s 199 (333)
+....+|||||+|.+..-|...|. .-.|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 455799999999999999999887 88999974
No 288
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.93 E-value=0.035 Score=52.08 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=75.0
Q ss_pred CCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEccCCCCC-CCCCCcceEEe
Q 019957 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVHA 243 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp-~~~~~fD~V~~ 243 (333)
+.+|||.=+|+|-=+...+.. ....+|+.-|+|+.+++..+++++.+++ .. .+.+...|+..+- .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999776666665 3345899999999999999999999886 34 5888888886642 24678999964
Q ss_pred ccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
.-+..|..+|+.+.+.++.||.|.++.-.
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 44456789999999999999999987643
No 289
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=95.90 E-value=0.0045 Score=37.01 Aligned_cols=35 Identities=17% Similarity=0.493 Sum_probs=22.9
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+.+.||.|+......+.. .+ -....++|++|++.|
T Consensus 1 M~i~Cp~C~~~y~i~d~~---ip-~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 1 MIITCPNCQAKYEIDDEK---IP-PKGRKVRCSKCGHVF 35 (36)
T ss_pred CEEECCCCCCEEeCCHHH---CC-CCCcEEECCCCCCEe
Confidence 468999999976443220 11 111368999999987
No 290
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.64 Score=40.51 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=70.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-CCCCC
Q 019957 164 SAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGF 237 (333)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~ 237 (333)
...+..++|+|+|+..-++.+.+. +....++.+|+|...++...+.+...-. .-.+.-+.+|.+. +. .+...
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~ 153 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGG 153 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCC
Confidence 345678999999998776666554 3346899999999888765544433211 3345556677643 11 11222
Q ss_pred cc-eEEeccccccCC-C-hHHHHHHHHHhccCCcEEEEEEe
Q 019957 238 VD-AVHAGAALHCWP-S-PSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 238 fD-~V~~~~vl~h~~-d-~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
-- .++....|..+. + -..+|..++..|+||-.+++-+-
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 22 334455566553 2 25789999999999999988664
No 291
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=95.77 E-value=0.0057 Score=35.94 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=16.3
Q ss_pred ccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
||.||+++....+.+.+. ..+.|+.||..+
T Consensus 3 C~~CG~~l~~~ip~gd~r-----~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDR-----ERLVCPACGFIH 32 (34)
T ss_dssp -TTT--B-EEE--TT-SS------EEEETTTTEEE
T ss_pred cccccChhhhhcCCCCCc-----cceECCCCCCEE
Confidence 999999987765533322 378899998753
No 292
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.75 E-value=0.063 Score=54.45 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHHhc-----C
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQD-----N 214 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~g~D~s~---~~~~~a~-----------~~~~~~-----~ 214 (333)
+.-+|||+|-|+|.+.....+.. + ..+++.+|..+ +.+..+. +..... |
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999998665544322 2 24789999644 3332222 111110 1
Q ss_pred cC------CCCCeEEEEccCCC-CCCCCCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCCCcc
Q 019957 215 TI------LTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTS 283 (333)
Q Consensus 215 ~~------~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 283 (333)
.. ..-.+++..+|+.+ ++--...||+++.... .--.+| ..+++.+.++++|||.+.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 00 01145577788754 2322356999997542 111233 588999999999999987544
Q ss_pred hhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957 284 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
+...+++-|.++||++.+
T Consensus 207 -----------------~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 207 -----------------SAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred -----------------hHHHHHHHHHHcCCeeee
Confidence 234677888888887755
No 293
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.73 E-value=0.019 Score=49.12 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=67.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 232 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 232 (333)
-.+++|+.+..|.++..|.++... ..++++|+-+ |. +.+++.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------------ccCceEEeecccCCHhHHHHH
Confidence 358999999999999999886311 1389999844 11 2568888999997742
Q ss_pred ---CCCCCcceEEeccc-----cccCCCh------HHHHHHHHHhccCCcEEEEEEe
Q 019957 233 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 233 ---~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
|..++.|+|+|.+. ||.+.+- ..+|.-...+|||||.|+---+
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 66679999999654 3433221 2455666789999999987543
No 294
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.72 E-value=0.077 Score=44.19 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHhhcccCCCeEEEEcCCcCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (333)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (333)
.+++-..++..|+|+|.-.|..+...+. .|...+|+++|++-..+..+... .+++.++.++-.+..
T Consensus 62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~ 133 (237)
T COG3510 62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIA 133 (237)
T ss_pred HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHH
Confidence 3444445567999999988866555544 35456899999987655444332 578999999987653
Q ss_pred -----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
.+++.--+.++...-||...-.+.|+.+.++|..|-++++.+.+..
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccccc
Confidence 1223333444555556655566778888899999999999887664
No 295
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.1 Score=50.05 Aligned_cols=106 Identities=9% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957 167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (333)
..+|+-+|+|-|-+.....+. ....+++++|-+|+++...+.+ .... +..+++++..|+...+.+..+.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC--WDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh--hcCeeEEEeccccccCCchhhccchH
Confidence 346889999999887655443 2345899999999988777653 2222 36789999999999875568899988
Q ss_pred eccccccCCCh---HHHHHHHHHhccCCcEEEEEEec
Q 019957 243 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 243 ~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
+ ..|..+.|- .+.|.-+.+.|||+|+.+=....
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 6 223333332 47799999999999877654443
No 296
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.67 E-value=0.047 Score=46.84 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCCcHHHHHHHHHhhcc------cCCCeEEEEcCCcCHHHHHH--HHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCC
Q 019957 148 FPGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILT 218 (333)
Q Consensus 148 ~~~~~~~~~~~~~~l~~------~~~~~vLDiGcG~G~~~~~l--~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~ 218 (333)
.|+....+..+.+++.. .++.++||||.|.-..--.+ .+.++ +.+|.|+++..++.|+..+..+ ++ .
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~l--~ 129 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPGL--E 129 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcch--h
Confidence 34555666777777753 24557899998875433222 23344 9999999999999999988776 33 3
Q ss_pred CCeEEEEccCCC--CC---CCCCCcceEEeccccccC
Q 019957 219 SNLALVRADVCR--LP---FASGFVDAVHAGAALHCW 250 (333)
Q Consensus 219 ~~i~~~~~d~~~--lp---~~~~~fD~V~~~~vl~h~ 250 (333)
..|++....-.+ ++ -.++.||+++|+--+|..
T Consensus 130 ~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 130 RAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred hheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 345544322211 11 236789999998777643
No 297
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.24 Score=50.14 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=61.7
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHHhcCcCCCCCeEEEEccC---CCCCCCCCCcceEEe
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHA 243 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~~ 243 (333)
..+--.|.||-.....+.+.+|+..++-+|-+...-..+ +..+.... ...++++.|.= ..+.|++=.-=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 358888999999999999999999999999876543322 22222221 22333333321 122344322333445
Q ss_pred ccccccCCChH---HHHHHHHHhc----c--CCcEEEEEEeccc
Q 019957 244 GAALHCWPSPS---NAVAEISRIL----R--SGGVFVGTTFLRY 278 (333)
Q Consensus 244 ~~vl~h~~d~~---~~l~~~~r~L----k--pgG~l~i~~~~~~ 278 (333)
.+..-+.+|.. ++++.+..+. + .-|.+++.|.+..
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 55566667763 3444443333 1 4467888887765
No 298
>PRK00420 hypothetical protein; Validated
Probab=95.52 E-value=0.0084 Score=45.58 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=24.8
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
.-.||.||.++..... |...|++||..+....
T Consensus 23 ~~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 23 SKHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS 54 (112)
T ss_pred cCCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence 3579999999976432 6899999999775544
No 299
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.42 E-value=0.051 Score=48.09 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ 212 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~ 212 (333)
+.+|+|+|+|+|.++..+.+... ..+++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999988876521 35899999999988888887765
No 300
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.35 E-value=0.038 Score=51.62 Aligned_cols=61 Identities=15% Similarity=0.360 Sum_probs=50.9
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
..|||||+|||.++..+.+.+. -.|+++|.-..|.+.|++....+|. .++|.++.-.-.+.
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~--SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGM--SDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCC--ccceeeecccccee
Confidence 3589999999999999999884 4799999999999999999998885 77888776544443
No 301
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=0.57 Score=45.88 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=25.0
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s 199 (333)
..+--.|.|+-.....+.+.+|+..+..+|-+
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d 293 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSD 293 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence 35667788888888888888887788888765
No 302
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=95.33 E-value=0.009 Score=32.81 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=18.8
Q ss_pred cccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999987644 2568999999874
No 303
>PRK11524 putative methyltransferase; Provisional
Probab=95.33 E-value=0.076 Score=47.92 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 019957 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (333)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 212 (333)
.+.++++.+..... .++..|||.=+|+|..+.+..+.+- +++|+|++++..+.|++++..
T Consensus 193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 34555566555544 4688999999999999999998876 999999999999999998754
No 304
>PHA00626 hypothetical protein
Probab=95.23 E-value=0.013 Score=37.88 Aligned_cols=33 Identities=21% Similarity=0.572 Sum_probs=21.1
Q ss_pred ecccCCCcc-ccccCCCCccccccccCceeeCCCCcccc
Q 019957 61 FSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 61 l~CP~C~~~-l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
+.||.||+. ...... . .-.++.+.|+.||..|.
T Consensus 1 m~CP~CGS~~Ivrcg~--c---r~~snrYkCkdCGY~ft 34 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT--M---RGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCCceeeeece--e---cccCcceEcCCCCCeec
Confidence 469999995 333211 0 01136899999999883
No 305
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.22 E-value=0.13 Score=47.48 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=61.6
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (333)
..++.+||=+|+|. |.++..+++.....+++++|.++..++.+++. .. ..-+.....++.+.....+.+|+|+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga-----~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA-----DKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC-----cEEecCCcccHHHHhccCCCCCEEE
Confidence 34577899899875 77777777764233699999999988888762 11 0001111111212111123588886
Q ss_pred eccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
-.- ..+ ..++.+.+.|++||++++...
T Consensus 241 d~~-----G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EVS-----GHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ECC-----CCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 432 222 457888899999999988754
No 306
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.065 Score=47.69 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC--CCCCCCcceEE
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAVH 242 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (333)
...++|-||.|.|...+...++-.-.++.-+|++...++..++.+...- ....+++.+..||-..+ ..+.+.||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4578999999999999888877434579999999999999988876421 11257888998887543 13467999998
Q ss_pred eccccccCCCh---------HHHHHHHHHhccCCcEEEEEEe
Q 019957 243 AGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 243 ~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.-- .|| +.....+.+.||+||+++...-
T Consensus 201 ~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 201 TDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred Eec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 632 233 3567888999999999988763
No 307
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.19 E-value=0.083 Score=45.45 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 019957 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 208 (333)
+.+.++++.+..... .++..|||.=||+|..+.+..+.+. +.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 445666666666654 4578999999999999999999876 89999999999988864
No 308
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=95.16 E-value=0.01 Score=35.96 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=22.6
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
+.+.||.|+......... .. .....++|++||+.+.
T Consensus 1 M~~~CP~C~~~~~v~~~~---~~-~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 1 MRIQCPNCKTSFRVVDSQ---LG-ANGGKVRCGKCGHVWY 36 (38)
T ss_pred CEEECCCCCCEEEeCHHH---cC-CCCCEEECCCCCCEEE
Confidence 458899999966443210 00 0113689999998764
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.05 E-value=0.1 Score=50.75 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=66.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-------------
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------- 230 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------------- 230 (333)
.++.++|=+|+|. |..+..+++.. +..|+++|.++..++.+++. ...++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 3568999999997 66666666553 34799999999988877752 12232222211
Q ss_pred ----------CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEE
Q 019957 231 ----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG 272 (333)
Q Consensus 231 ----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 272 (333)
++-.-..+|+|+....+.--+.|.-+.+++.+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124699998887777666776778899999999999764
No 310
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=95.02 E-value=0.017 Score=40.27 Aligned_cols=49 Identities=16% Similarity=0.419 Sum_probs=33.1
Q ss_pred eecccCCCccccccCCCCccccccccCceeeC--CCCccccCcCCceeeecc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVI 109 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~ 109 (333)
++.||.||+......... ..+.....+..|. +||+.|...+.+...+..
T Consensus 1 mm~CP~Cg~~a~irtSr~-~s~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~ 51 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRY-ITDTTKERYHQCQNVNCSATFITYESVQRYIVK 51 (72)
T ss_pred CccCCCCCCccEEEEChh-cChhhheeeeecCCCCCCCEEEEEEEEEEEEcC
Confidence 478999999763322212 2223555688999 999999877777666654
No 311
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.99 E-value=0.54 Score=47.85 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=53.9
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHHhcCcCCCCCeEEEEc-cCC--CCCCCCCCcce
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRA-DVC--RLPFASGFVDA 240 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~--~lp~~~~~fD~ 240 (333)
..+-..|.|+-.....+.+.+|+..+.-+|-+. ...+..-+.+.. ..+.++.+ ++. .+.++ .+++
T Consensus 430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~iakG~d~p--~v~l 501 (679)
T PRK05580 430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR------GEADILIGTQMLAKGHDFP--NVTL 501 (679)
T ss_pred CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc------CCCCEEEEChhhccCCCCC--CcCE
Confidence 356777778878888888887777777777543 223333333332 12223222 221 11222 3455
Q ss_pred EE--eccccccCCCh---HHHHHHHHHhc------cCCcEEEEEEeccc
Q 019957 241 VH--AGAALHCWPSP---SNAVAEISRIL------RSGGVFVGTTFLRY 278 (333)
Q Consensus 241 V~--~~~vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~~~~~ 278 (333)
|. .....-+.+|. .++++.+..+. ..+|.+++.+....
T Consensus 502 V~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 502 VGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred EEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 53 23333444443 34444444332 45799999887654
No 312
>PRK13699 putative methylase; Provisional
Probab=94.99 E-value=0.16 Score=44.23 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 019957 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (333)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 212 (333)
..+.++.+.+..... .++..|||.=||+|..+.+..+.+. +++|+|+++...+.+.+++..
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 345566666655444 3678999999999999999888876 899999999999999988765
No 313
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=94.95 E-value=0.038 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.565 Sum_probs=23.5
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
.+.||.|+..+...... . ...+.|+.||..+-
T Consensus 2 ~~~CP~CG~~iev~~~~------~-GeiV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENPE------L-GELVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCCc------c-CCEEeCCCCCCEEE
Confidence 56899999988654321 1 24789999999883
No 314
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.012 Score=44.32 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=24.4
Q ss_pred ccccCceeeCCCCccccCcCCceeeecc
Q 019957 82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (333)
Q Consensus 82 ~~~~~~~~C~~C~~~~~~~~g~~~~~~~ 109 (333)
.+..|.+.|++||+.|++.+|++|.+..
T Consensus 93 ~v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 93 DVIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hhccceEecCCCCcEeecccCCcccccC
Confidence 3556899999999999999999998864
No 315
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.90 E-value=0.069 Score=45.37 Aligned_cols=119 Identities=20% Similarity=0.128 Sum_probs=68.5
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcC---c---------------
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDN---T--------------- 215 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~---~--------------- 215 (333)
++-..++....+-++-|-.||.|+++-.+.-.... ..++|.|+++++++.|++++.-.. +
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 34444444445678999999999998777655322 479999999999999999873211 0
Q ss_pred --------------------C-CCCCeEEEEccCCCCC-----CCCCCcceEEeccccccCCCh---------HHHHHHH
Q 019957 216 --------------------I-LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWPSP---------SNAVAEI 260 (333)
Q Consensus 216 --------------------~-~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~---------~~~l~~~ 260 (333)
. ........++|+.+.. -.....|+|+..--..++.++ ..+|..+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 0 1233667788887621 112346999875444333322 4789999
Q ss_pred HHhccCCcEEEEEE
Q 019957 261 SRILRSGGVFVGTT 274 (333)
Q Consensus 261 ~r~LkpgG~l~i~~ 274 (333)
..+|..++++.+++
T Consensus 201 ~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 201 APVLPERSVVAVSD 214 (246)
T ss_dssp HCCS-TT-EEEEEE
T ss_pred HhhCCCCcEEEEec
Confidence 99996666666644
No 316
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=94.88 E-value=0.017 Score=36.01 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=19.6
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+.||.|++.....+ ...+.+.|++||.+-
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence 57999999753222 123688999998764
No 317
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.22 Score=45.80 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=79.0
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEecc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 245 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 245 (333)
..+|||.=+|+|-=+..++...+..+++.-|+|+.+.+.++++++.+. ..+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEe---
Confidence 568999999999888777777655589999999999999999998873 33555666777554322 36788874
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
|.-+..|..+++.+.+.++.||.+-++--
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 34445678899999999999999988653
No 318
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.83 E-value=0.54 Score=38.77 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=76.5
Q ss_pred EEcCCcCHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHH---HHHHhcCcCCCCCeE-EEEccCCCCC----CCCCCcce
Q 019957 172 DVSCGSGLFSRKFAKSGT-YSGVVALDFSE--NMLRQCY---DFIKQDNTILTSNLA-LVRADVCRLP----FASGFVDA 240 (333)
Q Consensus 172 DiGcG~G~~~~~l~~~~~-~~~v~g~D~s~--~~~~~a~---~~~~~~~~~~~~~i~-~~~~d~~~lp----~~~~~fD~ 240 (333)
=||=|.=.|+..|++... ...+++.-.+. ...+... +++.... ..++. ....|+..+. ...+.||.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCE
Confidence 356666677778887754 44555554433 2222111 2222210 12222 3345666653 35689999
Q ss_pred EEeccccccCC------C---------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHH
Q 019957 241 VHAGAALHCWP------S---------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 305 (333)
Q Consensus 241 V~~~~vl~h~~------d---------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l 305 (333)
|+.++ .|+. + ...+++.+..+|+++|.+.++-....+ ++..++
T Consensus 79 IiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------y~~W~i 136 (166)
T PF10354_consen 79 IIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------YDSWNI 136 (166)
T ss_pred EEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------------CccccH
Confidence 99864 3443 0 135788899999999999997754431 355688
Q ss_pred HHHHHhCCCcEEEEEEe
Q 019957 306 EDLCTSCGLTNYTSKVQ 322 (333)
Q Consensus 306 ~~ll~~aGf~~v~~~~~ 322 (333)
..+.+++||..++....
T Consensus 137 ~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 137 EELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHHhcCCEEEEEecC
Confidence 89999999999886543
No 319
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=94.75 E-value=0.017 Score=32.84 Aligned_cols=27 Identities=19% Similarity=0.578 Sum_probs=14.5
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
-.||.|++.....+. ..+.|+.|++.+
T Consensus 3 p~Cp~C~se~~y~D~----------~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDG----------ELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-S----------SSEEETTTTEEE
T ss_pred CCCCCCCCcceeccC----------CEEeCCcccccC
Confidence 379999998766544 489999999864
No 320
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.019 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=24.0
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (333)
....||.|+..-.... -.+++.|..||..|.-
T Consensus 34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCcceeee---------ccCeEEcCCCCCeecc
Confidence 4568999999844333 2489999999998843
No 321
>PHA01634 hypothetical protein
Probab=94.73 E-value=0.096 Score=40.64 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 213 (333)
.+.+|+|||++.|..+.+++-+| ...|+++++++...+..++..+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhh
Confidence 57799999999999999999887 568999999999999998876654
No 322
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.57 E-value=0.042 Score=52.19 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=82.4
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-------CCCCCCcc
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------PFASGFVD 239 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-------p~~~~~fD 239 (333)
+..+|-+|-|.|.+...+....+...++++++++.+++.|.+++.... ..+..+...|.... .-.+..||
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 557899999999999999998888899999999999999999765422 12233333333221 12456899
Q ss_pred eEEe----ccccccCCCh------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH
Q 019957 240 AVHA----GAALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288 (333)
Q Consensus 240 ~V~~----~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 288 (333)
+++. .. .|-+.-| ..+|..++.+|.|.|.+++....+.....+-+...
T Consensus 373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~ 430 (482)
T KOG2352|consen 373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMN 430 (482)
T ss_pred EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHh
Confidence 9885 22 3333333 36788899999999999998877765544443333
No 323
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.50 E-value=0.2 Score=38.97 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=70.4
Q ss_pred CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-CCCCCcceEEecccccc
Q 019957 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC 249 (333)
Q Consensus 176 G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h 249 (333)
|.|.++..+++... .+++++|.++.-++.+++. .--.++..+-.++ . .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEEecC---
Confidence 45778888888753 7999999999998888762 1122222222211 1 22347999875432
Q ss_pred CCChHHHHHHHHHhccCCcEEEEEEecccCCCcchh-hHHHHHh-hhccCCCCCHHHHHHHHH
Q 019957 250 WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-GRVLRER-ILQNYNYLTEEEIEDLCT 310 (333)
Q Consensus 250 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~t~~~l~~ll~ 310 (333)
. ...++....+|+++|.+++...... ...++- ...+... ........+.+++.+.++
T Consensus 68 --~-~~~~~~~~~~l~~~G~~v~vg~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 68 --S-GDTLQEAIKLLRPGGRIVVVGVYGG-DPISFNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp --S-HHHHHHHHHHEEEEEEEEEESSTST-SEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred --c-HHHHHHHHHHhccCCEEEEEEccCC-CCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 2 4578999999999999999876651 122221 2222221 113334445677776664
No 324
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.45 E-value=0.13 Score=46.15 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=77.1
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC--CCCcceEEeccc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA 246 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v 246 (333)
+++|+-||.|.+...+...| ...+.++|+++.+++..+.+.. .. ++.+|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 68999999999999998887 3468999999999988877532 22 566787776432 357999997543
Q ss_pred cccC---------CChH-HHHHHHHHh---ccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957 247 LHCW---------PSPS-NAVAEISRI---LRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313 (333)
Q Consensus 247 l~h~---------~d~~-~~l~~~~r~---LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG 313 (333)
...+ .|+. .++.++.++ ++|. +++.+.... + .. ....-..+.+...|++.|
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g-----~-~~--------~~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG-----L-LT--------HDNGNTLKVILNTLEELG 135 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc-----h-hc--------cCchHHHHHHHHHHHhCC
Confidence 3221 2333 233344443 3454 444443221 0 00 001123467888889999
Q ss_pred CcEEEE
Q 019957 314 LTNYTS 319 (333)
Q Consensus 314 f~~v~~ 319 (333)
+.+...
T Consensus 136 Y~~~~~ 141 (275)
T cd00315 136 YNVYWK 141 (275)
T ss_pred cEEEEE
Confidence 986543
No 325
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.40 E-value=0.52 Score=47.66 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc-
Q 019957 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 245 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 245 (333)
+..+.-.|-|+-.....+.+.+|+..|.-+|-+. .++. +. ....++.+.-...|...+.+.+|....
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~----~~-------~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDT----VD-------AGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHh----hc-------cCCCEEEECCCCcccccCCceEEEEEcc
Confidence 3457888999999999999999988899888542 2221 11 134455554322232235677765433
Q ss_pred -ccccCCCh---HHHHHHHHHhc------cCCcEEEEEE
Q 019957 246 -ALHCWPSP---SNAVAEISRIL------RSGGVFVGTT 274 (333)
Q Consensus 246 -vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~ 274 (333)
.+-+.+|. .++++.+.++. +++|.+++.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 23344444 34555544443 3478888875
No 326
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.40 E-value=0.75 Score=42.50 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (333)
..++.+||=+|+|. |.++..++++ ....+++++|.++.-++.+++ .+ .. ....+ +. .+..+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-----~~-~~~~~---~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-----ET-YLIDD---IP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-----ce-eehhh---hh-hccCCcEE
Confidence 35678999999876 6666666654 324589999999888777754 11 11 11111 11 11248888
Q ss_pred EeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+-.-. . ......+....+.|++||++++.-.
T Consensus 227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCC--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 74321 0 0023468889999999999987654
No 327
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=94.31 E-value=0.041 Score=34.87 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=22.7
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
..+.||.||..+...... ..++|+.||...
T Consensus 2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~ 31 (46)
T PRK00398 2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRI 31 (46)
T ss_pred CEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence 568999999987654331 268999999865
No 328
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.27 E-value=0.17 Score=45.44 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
++.+|.-||.|. |..+..++--. ...|+.+|+|.+.+++....+ ..++..+.....++.-.-.+.|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 345788888886 77776666543 569999999999888877754 335677766665554334578999987
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
-.+---..|.-+.+++.+.||||++++=.-
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 777777889989999999999999987543
No 329
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.25 E-value=0.63 Score=42.35 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
++.++|=+|+|. |.++..+++......++++|.++..++.+... .++ |..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence 466888889876 88888887765333577889888776655431 011 11110 13468988754
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
-. . ...+..+.+.|+++|++++.-.
T Consensus 208 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 SG-----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CC-----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 22 2 2357888899999999987654
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.20 E-value=1.3 Score=38.74 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=60.2
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCCCc
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV 238 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f 238 (333)
.++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. + ...++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL----G-----ADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----C-----CceeccCCcCCHHHHHHHhcCCCC
Confidence 5678999999986 66666666654 35899999998877776542 1 011111110010 0123569
Q ss_pred ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
|+|+.... . ...+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVG-----G-PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCC-----C-HHHHHHHHHhcccCCEEEEEccC
Confidence 99885432 1 14577788899999999876644
No 331
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.11 E-value=0.071 Score=41.70 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=54.9
Q ss_pred CeEEEEccCCC-CCCCCCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh
Q 019957 220 NLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL 294 (333)
Q Consensus 220 ~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 294 (333)
.+++..+|+.+ ++--+..||+|+... +---.+| ..+++++.+++++||.+...+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys-------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS-------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence 56677788744 332236899998754 2222344 588999999999999876533
Q ss_pred ccCCCCCHHHHHHHHHhCCCcEEEEEEe-CeEEEEEEeCC
Q 019957 295 QNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 333 (333)
Q Consensus 295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~~~~~~~a~kp 333 (333)
....+++.|.++||.+.+.... +.--+..|.||
T Consensus 91 ------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 91 ------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp -------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred ------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 1246889999999998775433 23466677765
No 332
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.08 E-value=0.06 Score=47.73 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=62.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HHH--hcCcCCCCCeEEEEccCCCCCC-C
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-------FIK--QDNTILTSNLALVRADVCRLPF-A 234 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~-------~~~--~~~~~~~~~i~~~~~d~~~lp~-~ 234 (333)
..+++|||+|||.|.-...+...+ ...+...|.+...++.-.- .+. .... ..-......++.+.-+ .
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~--~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN--HKVDEILNSLLSDGVFNH 191 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhc--ccceeccccccccchhhh
Confidence 357899999999998888777766 3478888887766631110 000 0000 0011111221111111 1
Q ss_pred CC--CcceEEeccccccCCChHHH-HHHHHHhccCCcEEEEEE
Q 019957 235 SG--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTT 274 (333)
Q Consensus 235 ~~--~fD~V~~~~vl~h~~d~~~~-l~~~~r~LkpgG~l~i~~ 274 (333)
.+ +||+|.++..+.-......+ +......++++|++++.-
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 23 79999998888776655554 555566778899887754
No 333
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.11 Score=49.21 Aligned_cols=111 Identities=23% Similarity=0.120 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cC--CCCCCC-CCCc
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRLPFA-SGFV 238 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~--~~lp~~-~~~f 238 (333)
..+..++|+|.|.|.-...+.... -.-.++.||.+..|.......++... ..+-.++.. -+ ..+|.. ...|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCcccce
Confidence 456689999998775544444332 23479999999999998888765511 011111111 11 123433 3459
Q ss_pred ceEEeccccccCCChH---HHHHHHH-HhccCCcEEEEEEeccc
Q 019957 239 DAVHAGAALHCWPSPS---NAVAEIS-RILRSGGVFVGTTFLRY 278 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~---~~l~~~~-r~LkpgG~l~i~~~~~~ 278 (333)
|+|++.+.++++.++. .+.+++. +..++|+.+++.+....
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999999998764 3334443 45688999999887654
No 334
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.95 E-value=2.2 Score=40.06 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHH----HHHHHHh--C-CCCeEEEEeC----CHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLF----SRKFAKS--G-TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV 224 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~----~~~l~~~--~-~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~~~i~~~ 224 (333)
+.|.+.+...+.-.|+|+|.|.|.- ...|+.+ + |..++||++. +...++...+++.+..-...-...|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 5666666666667899999999953 3444443 1 4468999999 77777777766543210001133343
Q ss_pred E---ccCCCCC-----CCCCCcceEEeccccccCCC-------hHHHHHHHHHhccCCcEEEEE
Q 019957 225 R---ADVCRLP-----FASGFVDAVHAGAALHCWPS-------PSNAVAEISRILRSGGVFVGT 273 (333)
Q Consensus 225 ~---~d~~~lp-----~~~~~fD~V~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~ 273 (333)
. .+++.+. ..++..=+|-+...|||+.+ |...+=...+.|+|.-++++.
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 3 2333331 22333334556677888862 333333444578998555543
No 335
>PRK13699 putative methylase; Provisional
Probab=93.88 E-value=0.18 Score=43.90 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=43.3
Q ss_pred EEEEccCCCC--CCCCCCcceEEecccc----c-cCC---------C-hHHHHHHHHHhccCCcEEEEEEecccCCCcch
Q 019957 222 ALVRADVCRL--PFASGFVDAVHAGAAL----H-CWP---------S-PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (333)
Q Consensus 222 ~~~~~d~~~l--p~~~~~fD~V~~~~vl----~-h~~---------d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 284 (333)
+++.+|..++ .++++++|+|+..--. . +.. + ....+.++.|+|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 3555665432 3456777777764111 0 000 0 1467899999999999887633110
Q ss_pred hhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957 285 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 318 (333)
Q Consensus 285 ~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~ 318 (333)
....+...++++||.+..
T Consensus 76 ----------------~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 76 ----------------RVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred ----------------cHHHHHHHHHHCCCEEee
Confidence 012455677888987654
No 336
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=93.75 E-value=0.036 Score=33.07 Aligned_cols=28 Identities=18% Similarity=0.526 Sum_probs=21.2
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (333)
..+.|+.|++....... |.+.|..||+.
T Consensus 7 ~~~~C~~C~~~~~~~~d----------G~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYSDD----------GFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence 44679999998544433 79999999985
No 337
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=93.73 E-value=0.044 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=22.3
Q ss_pred cccCeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
+....--||.|++.+.... .+.+.|..||..+.
T Consensus 16 v~~~~~fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~~ 48 (50)
T PRK00432 16 VKRKNKFCPRCGSGFMAEH----------LDRWHCGKCGYTEF 48 (50)
T ss_pred EEEccCcCcCCCcchhecc----------CCcEECCCcCCEEe
Confidence 4445558999998632222 15899999998763
No 338
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.71 E-value=0.03 Score=42.35 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=41.5
Q ss_pred CcceEEeccccccCC----C--hHHHHHHHHHhccCCcEEEEEEecc--cCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957 237 FVDAVHAGAALHCWP----S--PSNAVAEISRILRSGGVFVGTTFLR--YTSSTSLTGRVLRERILQNYNYLTEEEIEDL 308 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~----d--~~~~l~~~~r~LkpgG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l 308 (333)
+||+|+|..|.-++. | ...+++.+.+.|+|||.|++..-.- +..... ......... .... +.++++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~-~~~~~~~n~-~~i~-lrP~~F~~~ 77 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKR-LSEEIRENY-KSIK-LRPDQFEDY 77 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTT-S-HHHHHHH-HH-----GGGHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhh-hhHHHHhHH-hceE-EChHHHHHH
Confidence 489999988865432 2 2478999999999999999964221 100000 011111111 1222 456678887
Q ss_pred HHh--CCCcEEEE
Q 019957 309 CTS--CGLTNYTS 319 (333)
Q Consensus 309 l~~--aGf~~v~~ 319 (333)
|.+ .||..++.
T Consensus 78 L~~~evGF~~~e~ 90 (110)
T PF06859_consen 78 LLEPEVGFSSVEE 90 (110)
T ss_dssp HTSTTT---EEEE
T ss_pred HHhcccceEEEEE
Confidence 776 69988764
No 339
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=93.64 E-value=0.055 Score=31.57 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=23.8
Q ss_pred CeecccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
.+..|+.|++.+.. ... +.+.|..||..|+
T Consensus 2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence 45689999998866 433 5899999998875
No 340
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.53 E-value=0.09 Score=47.76 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=86.9
Q ss_pred HHHHHHH-HHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHH-------HHHHHHhcCcCCCCCeEE
Q 019957 152 DEEFKMA-QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-------CYDFIKQDNTILTSNLAL 223 (333)
Q Consensus 152 ~~~~~~~-~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~-------a~~~~~~~~~~~~~~i~~ 223 (333)
+.++.++ .+.....+|..|+|-=.|||.++...+..|. -|+|.||+-.+++. .+.++++.|.. ..-+.+
T Consensus 193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldv 269 (421)
T KOG2671|consen 193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDV 269 (421)
T ss_pred chhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-chhhhe
Confidence 3344333 3444456789999999999999988888765 89999999888773 35667777641 334678
Q ss_pred EEccCCCCCCC-CCCcceEEecc---c---------------------cccCCCh---------HHHHHHHHHhccCCcE
Q 019957 224 VRADVCRLPFA-SGFVDAVHAGA---A---------------------LHCWPSP---------SNAVAEISRILRSGGV 269 (333)
Q Consensus 224 ~~~d~~~lp~~-~~~fD~V~~~~---v---------------------l~h~~d~---------~~~l~~~~r~LkpgG~ 269 (333)
+.+|+...|.. +..||.|+|.- | ..|.+.. ...|.-..+.|..||+
T Consensus 270 l~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggr 349 (421)
T KOG2671|consen 270 LTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGR 349 (421)
T ss_pred eeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCce
Confidence 89999887754 56899999841 1 1233221 2456677899999999
Q ss_pred EEEEEecc
Q 019957 270 FVGTTFLR 277 (333)
Q Consensus 270 l~i~~~~~ 277 (333)
+++.-|..
T Consensus 350 lv~w~p~~ 357 (421)
T KOG2671|consen 350 LVFWLPTI 357 (421)
T ss_pred EEEecCch
Confidence 99877643
No 341
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=93.48 E-value=0.041 Score=42.82 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=22.9
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+....||.||.+|.... |.+.|+.|++..
T Consensus 26 ML~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~ 54 (131)
T COG1645 26 MLAKHCPKCGTPLFRKD-----------GEVFCPVCGYRE 54 (131)
T ss_pred HHHhhCcccCCcceeeC-----------CeEECCCCCceE
Confidence 34457999999997733 699999999654
No 342
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=93.43 E-value=0.036 Score=33.75 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=18.1
Q ss_pred ecccCCCccccccC-CCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~-~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+.||.|++.-.... ......++-..-.+.|.+||+.|
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 47999999421110 00111122233478899999876
No 343
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.32 E-value=1.2 Score=40.61 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=61.4
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC------CCCCC
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 236 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 236 (333)
..++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. + +..+..+-... ....+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----g------~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----G------ADEVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C------CCEEEcCCCcCHHHHHHHhcCC
Confidence 45577888888764 77777777764 34799999999888777542 1 11111111110 11245
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.+|+|+.... ....++++.+.|+++|.++....
T Consensus 232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 6898875321 13468889999999999987643
No 344
>PRK10220 hypothetical protein; Provisional
Probab=93.28 E-value=0.069 Score=39.89 Aligned_cols=33 Identities=18% Similarity=0.571 Sum_probs=25.9
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
.+-.||.|++...-... ..+.|+.|+|.|...+
T Consensus 2 ~lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 2 SLPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE 34 (111)
T ss_pred CCCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence 45679999998866554 4899999999986554
No 345
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.23 E-value=0.31 Score=44.98 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=35.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 208 (333)
.+-..|+|+|.|.|++++.+.-.+ +..|.++|-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 445689999999999999998775 6699999999877766654
No 346
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.039 Score=44.64 Aligned_cols=45 Identities=24% Similarity=0.483 Sum_probs=27.5
Q ss_pred cccCeecccCCCccccccCCCCcc------ccccccCceeeCCCCccccCc
Q 019957 56 LEGDLFSCPICYEPLIRKGPTGLT------LGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~~~~ 100 (333)
+....-+||.|+++|......... .-..+...++|++||..|...
T Consensus 93 ~~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW~G 143 (165)
T COG1656 93 LFPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYWKG 143 (165)
T ss_pred cccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccccCc
Confidence 345677999999988654332100 011122366799999988443
No 347
>PTZ00357 methyltransferase; Provisional
Probab=93.13 E-value=0.71 Score=46.01 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=64.9
Q ss_pred eEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcC------CCCCeEEEEccCCCCCCC----
Q 019957 169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADVCRLPFA---- 234 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~~~lp~~---- 234 (333)
.|+-+|+|-|-+.....+. +-..+++++|-++..+.....+......| ....++++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999887655443 44568999999976554544443222221 134589999999876422
Q ss_pred -------CCCcceEEeccccccCCCh---HHHHHHHHHhccC----CcE
Q 019957 235 -------SGFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV 269 (333)
Q Consensus 235 -------~~~fD~V~~~~vl~h~~d~---~~~l~~~~r~Lkp----gG~ 269 (333)
-+++|+|++ ..|..+.|- .+.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 137999987 223333332 4678888888876 776
No 348
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=93.07 E-value=0.056 Score=43.81 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=23.3
Q ss_pred ecccCCCccccccCCC-CccccccccCceeeCCCCccccCcC
Q 019957 61 FSCPICYEPLIRKGPT-GLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
+.||-|+++......+ ....+.......+|++||..|..-+
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e 42 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFE 42 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeE
Confidence 5799999865322211 1111112222478999999995443
No 349
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.79 E-value=0.23 Score=44.82 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=72.6
Q ss_pred CeEEEEcCCcCHHHHHHHHhC--------------------CCCeEEEEeCCH--HHHHHHHHHHHhc------------
Q 019957 168 GLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSE--NMLRQCYDFIKQD------------ 213 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~g~D~s~--~~~~~a~~~~~~~------------ 213 (333)
.+||-||.|.|.=...++... +...++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999975444333322 114899999875 3444444443332
Q ss_pred Cc--CCCCCeEEEEccCCCCCCC-------CCCcceEEeccccccC-----CChHHHHHHHHHhccCCcEEEEEEecc
Q 019957 214 NT--ILTSNLALVRADVCRLPFA-------SGFVDAVHAGAALHCW-----PSPSNAVAEISRILRSGGVFVGTTFLR 277 (333)
Q Consensus 214 ~~--~~~~~i~~~~~d~~~lp~~-------~~~fD~V~~~~vl~h~-----~d~~~~l~~~~r~LkpgG~l~i~~~~~ 277 (333)
.. ...-++.|.+.|+..+..+ ....|+|+..+.++.+ ....++|..+-..++||..|+|++...
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 00 0123678999999776532 1357899888877543 445689999999999999999987543
No 350
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.76 E-value=0.098 Score=46.64 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=70.3
Q ss_pred CCeEEEEcCCcCHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 167 GGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 167 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
+..|.|+=+|.|+|+. .+...+ ...|+++|.++..++..++.++.+++ ..+...+.+|-.... .+...|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~~~-~~~~AdrVnLGL 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRNPK-PRLRADRVNLGL 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhccccccC-ccccchheeecc
Confidence 5789999999999998 666666 56999999999999999998887764 444455555544432 356677776543
Q ss_pred ccccCCChHHHHHHHHHhccCC-c-EEEEEEec
Q 019957 246 ALHCWPSPSNAVAEISRILRSG-G-VFVGTTFL 276 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~Lkpg-G-~l~i~~~~ 276 (333)
+|...+-.-.+-.+|||. | .+-+.+..
T Consensus 271 ----lPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 271 ----LPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred ----ccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 344455455566777764 4 44444433
No 351
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.74 E-value=3.3 Score=36.99 Aligned_cols=97 Identities=24% Similarity=0.181 Sum_probs=59.2
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cC-CCC-CC-CCCCc
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CRL-PF-ASGFV 238 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~~l-p~-~~~~f 238 (333)
..++.+||=+|+|. |.++..+++......++++|.++..++.+++. | .. .++.. +. ..+ .. ....+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G----AT-ALAEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----Cc-EecCchhhHHHHHHHhCCCCC
Confidence 34678899999875 77777777664223489999998887777652 1 11 11110 10 000 00 12358
Q ss_pred ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
|+|+-.- .. ...++.+.+.|+++|++++...
T Consensus 189 d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFS-----GA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECC-----CC-hHHHHHHHHHhcCCCEEEEecc
Confidence 8886432 12 3457888999999999987664
No 352
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.69 E-value=1.8 Score=39.70 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=59.9
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (333)
....++.+||=.|+|. |.++..+++.. +..+++++.++..++.+++. | .+.+. +..+. ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G------a~~vi-~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G------AASAG-GAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C------Cceec-ccccc--CcccceE
Confidence 3455688999999764 66666666664 44799999998887777662 1 11111 11111 1235787
Q ss_pred EEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
++.... .+ ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 654332 12 368888899999999988654
No 353
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=92.59 E-value=0.062 Score=40.91 Aligned_cols=22 Identities=32% Similarity=0.899 Sum_probs=18.6
Q ss_pred ccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
||+|++++... .++|++|+...
T Consensus 1 CPvCg~~l~vt-------------~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVVT-------------RLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEEE-------------EEEcCCCCCEE
Confidence 99999999664 78999998754
No 354
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=0.04 Score=42.07 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=28.2
Q ss_pred ccCeecccCCCccccccCC--CCccccccccCceeeCCCCccccCcC
Q 019957 57 EGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~--~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
+..+++||+|..+..-... ....++.-|...-.|.+||..||..+
T Consensus 36 eati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 36 EATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred hHHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 3468899999886532211 11222333344567999999998764
No 355
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=0.62 Score=42.94 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh----CC----CCeEEEEeCCHHHHHHHHHHHHhc
Q 019957 166 QGGLLVDVSCGSGLFSRKFAKS----GT----YSGVVALDFSENMLRQCYDFIKQD 213 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~g~D~s~~~~~~a~~~~~~~ 213 (333)
.+..++|+|.|.|.++..+.+. .| ..++..+|+|+...+.=++.++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3568999999999998877654 22 568999999999887777776653
No 356
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=92.45 E-value=0.092 Score=39.22 Aligned_cols=32 Identities=19% Similarity=0.513 Sum_probs=25.1
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
+-.||.|++...-... ..+.|+.|+|.+....
T Consensus 2 lp~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 2 LPPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE 33 (109)
T ss_pred CCcCCcCCCcceEecC----------CeeECccccccccccc
Confidence 3579999998866554 4899999999986553
No 357
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=92.35 E-value=0.11 Score=30.13 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=15.2
Q ss_pred cccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
=||.||++...... ....+|+.|++.+
T Consensus 5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence 39999998766543 1378899999764
No 358
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=92.23 E-value=0.087 Score=32.27 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=20.9
Q ss_pred ecccCCCcccccc-CCCCccccccccCceeeCCCCcccc
Q 019957 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
..||.|++.-... .....+.++-..-.+.|.+|++.+.
T Consensus 1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~ 39 (40)
T smart00440 1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR 39 (40)
T ss_pred CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence 3699999842111 0001112222234789999998763
No 359
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=0.17 Score=48.22 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=79.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCCCcc
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD 239 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD 239 (333)
.++.+|||.=+++|.-+...+...++ .++++-|.++..+...+++.+.++. ...+.....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v--~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV--EDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc--hhhcccccchHHHHHHhccccccccc
Confidence 34668999999999877766666433 5799999999999999998887664 44556666666543 22356899
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
+|-. .-+..+..+|+.+.+.++.||.|.++.-.
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 9864 33445678999999999999999987643
No 360
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.11 E-value=0.31 Score=42.90 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=62.3
Q ss_pred HhhcccCCCeEEEEcCCcCHHHHHHHH---hC--CCCeEEEEeC--------------------------CHHHHHHHHH
Q 019957 160 EYFKSAQGGLLVDVSCGSGLFSRKFAK---SG--TYSGVVALDF--------------------------SENMLRQCYD 208 (333)
Q Consensus 160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~--~~~~v~g~D~--------------------------s~~~~~~a~~ 208 (333)
..+...-++-|+|.||-.|..+..++. .. .+.+++++|- ....++..++
T Consensus 68 ~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~ 147 (248)
T PF05711_consen 68 QVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRE 147 (248)
T ss_dssp HCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHH
Confidence 333333356899999999976654432 21 2446888882 0124555555
Q ss_pred HHHhcCcCCCCCeEEEEccCCC-CC-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 209 FIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
++...++. ..++.++.|.+.+ +| .+.+++-++..-.= ........|..++..|.|||++++-+++
T Consensus 148 n~~~~gl~-~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 148 NFARYGLL-DDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp CCCCTTTS-STTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred HHHHcCCC-cccEEEECCcchhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 55555531 4689999999854 44 22233333322111 1112357899999999999999997754
No 361
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.11 E-value=1.3 Score=41.04 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=58.3
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCc
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFV 238 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~f 238 (333)
.++.+||=+|+|. |.++..+++.. ..++++++. ++..++.+++. | ...+...-++. ....+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G------a~~v~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G------ATYVNSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C------CEEecCCccchhhhhhcCCC
Confidence 4677899999876 77777777764 348999986 56666666541 1 12221110110 0012468
Q ss_pred ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
|+|+-.-. . ...+.+..+.|++||.+++...
T Consensus 240 d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG-----V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence 88875432 2 2367888999999999887654
No 362
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.87 E-value=0.1 Score=33.93 Aligned_cols=26 Identities=23% Similarity=0.671 Sum_probs=21.4
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
-.|+.|+..+...++ .+.|+.||..|
T Consensus 6 ~~C~~Cg~~~~~~dD-----------iVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDD-----------IVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCCC-----------EEECCCCCCcc
Confidence 479999998865553 89999999877
No 363
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.86 E-value=4.4 Score=37.13 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=59.4
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC---CC-C-CC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-P-FA 234 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-p-~~ 234 (333)
+...++.+||=+|+|. |.++..+++.. +.+ ++++|.++...+.+++. | . -.++...-. .+ . ..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~----g---a--~~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL----G---A--DFVINSGQDDVQEIRELTS 228 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C---C--CEEEcCCcchHHHHHHHhC
Confidence 3445678888898865 66666677664 335 99999998887777552 1 0 111111100 01 0 11
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
...+|+|+-... . ...+....+.|+++|.+++...
T Consensus 229 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 229 GAGADVAIECSG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 236898874321 1 2346777889999999987654
No 364
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.84 E-value=2.5 Score=39.28 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=60.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-CCC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FAS 235 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~ 235 (333)
...++.+||=.|+|. |.++..+++......++++|.++..++.+++. | --.++...-.+. . ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G-----ATHTVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-----CceEEcCCCcCHHHHHHHHhCC
Confidence 345678999999865 67777777765223599999999888887652 1 111221111110 0 112
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
..+|+|+-. +..+ ..++...+.+++||++++.-.
T Consensus 244 ~g~d~vid~-----~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVIDA-----VGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEEC-----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence 358888743 2223 357778889999999987653
No 365
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.63 E-value=3.6 Score=37.33 Aligned_cols=160 Identities=15% Similarity=0.107 Sum_probs=95.8
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (333)
+.+...+... ...|+-+|||-- ++..+-.++ ...|+-+|. |+.++.=++.+.+.+........++..|+.+-.
T Consensus 83 ~~~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 83 DFVRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 3444555444 568999999864 333333333 245555553 666666666677655322337899999997432
Q ss_pred --CCCCCcc-----eEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcch--hhHH--HHH----hhhc
Q 019957 233 --FASGFVD-----AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRV--LRE----RILQ 295 (333)
Q Consensus 233 --~~~~~fD-----~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~--~~~----~~~~ 295 (333)
+....|| ++++-+++.+++.. .++|+.|.....||-.++............. .... ... ....
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 238 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL 238 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc
Confidence 2223333 67788888888654 4789999999889888888764211000000 0000 000 0113
Q ss_pred cCCCCCHHHHHHHHHhCCCcEEEE
Q 019957 296 NYNYLTEEEIEDLCTSCGLTNYTS 319 (333)
Q Consensus 296 ~~~~~t~~~l~~ll~~aGf~~v~~ 319 (333)
.+......++..++.+.||.....
T Consensus 239 ~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 239 VYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred eeccCCHHHHHHHHHhcCEEEEec
Confidence 344456899999999999988764
No 366
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.60 E-value=2.2 Score=39.85 Aligned_cols=98 Identities=28% Similarity=0.230 Sum_probs=60.0
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 236 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 236 (333)
...++.+||=.|+|. |.++..+++......|+++|.++..++.+++. | -..++...-.++ ....+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G-----a~~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G-----ATATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C-----CceEeCCCchhHHHHHHHHhCC
Confidence 345677888899875 67777777764223699999999888877652 1 111111111110 01123
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.+|+|+-.- .. ...+....+.|+++|.+++...
T Consensus 259 g~d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 259 GVDYAFEMA-----GS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 588887432 11 2457788899999999887653
No 367
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=91.57 E-value=0.11 Score=39.33 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=23.1
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
-.||.||..+.-... ....|+.||..|+..
T Consensus 10 R~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence 369999998754433 367899999999766
No 368
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=91.56 E-value=0.17 Score=31.69 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=21.4
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
.+.|..||........ +.++|+.||+.-
T Consensus 2 ~Y~C~~Cg~~~~~~~~----------~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKSK----------DVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCCC----------CceECCCCCceE
Confidence 4789999997755422 589999999864
No 369
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=91.53 E-value=0.089 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=24.0
Q ss_pred cccCCCccccccCCCCccccccccCceeeCC--CCccccCc
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSK 100 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~ 100 (333)
.||.||+....... ..-.+.+..-++.|.+ ||+.|...
T Consensus 1 ~CP~Cg~~a~ir~S-~~~s~~~~~~Y~qC~N~~Cg~tfv~~ 40 (47)
T PF04606_consen 1 RCPHCGSKARIRTS-RQLSPLTRELYCQCTNPECGHTFVAN 40 (47)
T ss_pred CcCCCCCeeEEEEc-hhhCcceEEEEEEECCCcCCCEEEEE
Confidence 49999996533221 1122334445789999 99998544
No 370
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=91.49 E-value=0.077 Score=38.52 Aligned_cols=31 Identities=26% Similarity=0.833 Sum_probs=22.5
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
..+.||.|+........ .|++.|..|+..|.
T Consensus 34 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~~C~~~~A 64 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRVA---------TGIWKCKKCGKKFA 64 (90)
T ss_dssp S-BEESSSSSSEEEEEE---------TTEEEETTTTEEEE
T ss_pred CCCcCCCCCCceeEEee---------eEEeecCCCCCEEe
Confidence 35689999997644332 37999999998764
No 371
>PF14353 CpXC: CpXC protein
Probab=91.45 E-value=0.1 Score=40.99 Aligned_cols=41 Identities=20% Similarity=0.444 Sum_probs=23.9
Q ss_pred ecccCCCccccccCCCCcc-------ccccccC---ceeeCCCCccccCcC
Q 019957 61 FSCPICYEPLIRKGPTGLT-------LGAIYRS---GFKCRKCDKTYSSKD 101 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~-------~~~~~~~---~~~C~~C~~~~~~~~ 101 (333)
+.||.|+...........+ ...+..| .+.|++||+.+...-
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~ 52 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY 52 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence 6899999965332221111 1112222 568999999986543
No 372
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=90.98 E-value=0.21 Score=32.29 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=22.7
Q ss_pred cccCCCccccccCCCCccccccccCceeeCCCCccccCcCC
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (333)
-||.||+-+....... ...+.|+.||+.+.....
T Consensus 2 FCp~Cg~~l~~~~~~~-------~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGKE-------KRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCCC-------CCEEECCcCCCeEECCCc
Confidence 3999999664443210 137899999988866543
No 373
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.78 E-value=0.95 Score=40.17 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=44.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 164 SAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
..+...++|+|||.|.++.++.... +...++.+|....-.+ +..++..... .+.+.-+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~--~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDES--EPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCC--CCceEEEEEEeeccc
Confidence 3456689999999999999999876 4468999998654332 2223332210 135666777877764
No 374
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=90.77 E-value=0.12 Score=34.07 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=19.8
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (333)
...|.||.||...+..-..-.. ....++|++||..
T Consensus 25 ~v~F~CPnCGe~~I~Rc~~CRk----~g~~Y~Cp~CGF~ 59 (61)
T COG2888 25 AVKFPCPNCGEVEIYRCAKCRK----LGNPYRCPKCGFE 59 (61)
T ss_pred eeEeeCCCCCceeeehhhhHHH----cCCceECCCcCcc
Confidence 3567899999654332111000 1247889988853
No 375
>PRK10458 DNA cytosine methylase; Provisional
Probab=90.72 E-value=5.2 Score=38.75 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcccC------CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957 153 EEFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (333)
Q Consensus 153 ~~~~~~~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (333)
.....+.+++...+ .-+++|+=||.|.+..-+...|. ..+.++|+++.+.+.-+.+... .+....+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~ 141 (467)
T PRK10458 68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNE 141 (467)
T ss_pred HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceecc
Confidence 34456666654322 45899999999999999988874 3678999999887776665321 123344455
Q ss_pred cCCCC
Q 019957 227 DVCRL 231 (333)
Q Consensus 227 d~~~l 231 (333)
|+..+
T Consensus 142 DI~~i 146 (467)
T PRK10458 142 DIRDI 146 (467)
T ss_pred ChhhC
Confidence 66554
No 376
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=90.70 E-value=0.15 Score=35.06 Aligned_cols=26 Identities=35% Similarity=0.945 Sum_probs=16.9
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+.||.|+.+|.... +.++|..|+..|
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~ 27 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDY 27 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred CcCCCCCCccEEeC-----------CEEECccccccc
Confidence 57999999987764 488888888776
No 377
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.64 E-value=4 Score=38.03 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=53.6
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEE
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 242 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~ 242 (333)
.++.+||-.|+|. |.++..+++.. +.++++++.+......+.+. .| . -.++. .+...+.-..+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~---~G---a--~~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR---LG---A--DSFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh---CC---C--cEEEcCCCHHHHHhhcCCCCEEE
Confidence 4577888899875 77777777764 34788888776543222221 11 0 11111 01001110012478776
Q ss_pred eccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
-. +..+ ..+.+..+.|++||.++...
T Consensus 253 d~-----~g~~-~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 DT-----VSAV-HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EC-----CCCH-HHHHHHHHHhcCCcEEEEeC
Confidence 43 2222 35788889999999998764
No 378
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=90.62 E-value=0.13 Score=28.19 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=17.3
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (333)
...||.||..+.. +.-.|++||+.
T Consensus 2 ~~~Cp~Cg~~~~~-------------~~~fC~~CG~~ 25 (26)
T PF13248_consen 2 EMFCPNCGAEIDP-------------DAKFCPNCGAK 25 (26)
T ss_pred cCCCcccCCcCCc-------------ccccChhhCCC
Confidence 4579999995422 36689999864
No 379
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.57 E-value=4.5 Score=39.64 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=78.7
Q ss_pred CCCCcHHHHHHHHHhhccc--CCCeEEEEcCCcCHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCC
Q 019957 147 GFPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220 (333)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~ 220 (333)
.+..+...++.+.+.+.+. ++..|.|.-||+|.++....+. + ....++|.+....+...++.++.-.+.. ...
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~-~~t 274 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID-YAN 274 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-ccc
Confidence 3567788888877776653 4568999999999988754432 1 1246999999999999998875444321 112
Q ss_pred eEEEEccCCC-CCC-CCCCcceEEeccc--------------------ccc----CCC-hHHHHHHHHHhccCCcEEEEE
Q 019957 221 LALVRADVCR-LPF-ASGFVDAVHAGAA--------------------LHC----WPS-PSNAVAEISRILRSGGVFVGT 273 (333)
Q Consensus 221 i~~~~~d~~~-lp~-~~~~fD~V~~~~v--------------------l~h----~~d-~~~~l~~~~r~LkpgG~l~i~ 273 (333)
.....+|-.. ..+ ....||.|+++-- +.| ..+ -..++..+..+|++||...+.
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 2222233222 111 2345777765321 112 111 136778888999999986665
Q ss_pred Eec
Q 019957 274 TFL 276 (333)
Q Consensus 274 ~~~ 276 (333)
-+.
T Consensus 355 ~~~ 357 (501)
T TIGR00497 355 CFP 357 (501)
T ss_pred ecC
Confidence 543
No 380
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=90.55 E-value=0.12 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.3
Q ss_pred cccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (333)
.||.||..+... .-.|++||+.
T Consensus 1 ~Cp~CG~~~~~~-------------~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDD-------------AKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCc-------------CcchhhhCCc
Confidence 399999988432 4569999864
No 381
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=90.37 E-value=0.14 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=19.3
Q ss_pred cccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
=||.|+.-|....... ....|++|+..+++.
T Consensus 3 FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred eCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence 4999999775543311 122899999887654
No 382
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=90.18 E-value=0.22 Score=30.65 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=19.0
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 94 (333)
.-.||.|+.+|..... +...|..|+
T Consensus 17 ~~~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEecC----------CCEECCCCC
Confidence 3469999999977433 578899985
No 383
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=90.16 E-value=0.16 Score=42.35 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=26.1
Q ss_pred cCeecccCCCccccccCC--CCccccccccCceeeCCCCccccC
Q 019957 58 GDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTYSS 99 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~--~~~~~~~~~~~~~~C~~C~~~~~~ 99 (333)
...+.||+|++.+..... ..--++.+......|.+||..+..
T Consensus 12 ~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~D 55 (201)
T COG1779 12 ETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTD 55 (201)
T ss_pred eeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccc
Confidence 456789999996533221 111233444557789999987743
No 384
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.07 E-value=2.6 Score=40.11 Aligned_cols=99 Identities=8% Similarity=0.010 Sum_probs=61.7
Q ss_pred HHHHHHhhcc-cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957 155 FKMAQEYFKS-AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (333)
Q Consensus 155 ~~~~~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (333)
++.+.+..+. .++.+|+=+|+|. |.....+++.. +.+|+++|.++..++.|+.. +..... ..+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~~--~~e~- 254 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVMT--MEEA- 254 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEcc--HHHH-
Confidence 3444443332 4688999999997 76666555543 34899999999877777651 222221 1111
Q ss_pred CCCCCcceEEeccccccCCChHHHHHH-HHHhccCCcEEEEEEe
Q 019957 233 FASGFVDAVHAGAALHCWPSPSNAVAE-ISRILRSGGVFVGTTF 275 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~-~~r~LkpgG~l~i~~~ 275 (333)
-..+|+|+... ..+ ..+.. ..+.+|+||+++....
T Consensus 255 --v~~aDVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 255 --VKEGDIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --HcCCCEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 13579988642 223 34554 5889999999987663
No 385
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=90.01 E-value=0.24 Score=32.38 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=21.9
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (333)
+..||.||+.-...... ..+....+.+.|.+||...+.
T Consensus 1 LkPCPfCGg~~~~~~~~--~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 1 LKPCPFCGGADVYLRRG--FDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCCcceeeEec--cCCCCCEEEEECCCCCCCccc
Confidence 35799999954321100 011122345689999988655
No 386
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.72 E-value=4.4 Score=37.37 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=81.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC---CCCcceEEec
Q 019957 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG 244 (333)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 244 (333)
-+++|+=||.|.+..-+...| ..-+.++|+++.+++.-+.+. +...++..|+..+... ...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEeC
Confidence 479999999999999999888 446899999999888777753 2245666777654311 1178999975
Q ss_pred cccccC---------CChH----HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957 245 AALHCW---------PSPS----NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 311 (333)
Q Consensus 245 ~vl~h~---------~d~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 311 (333)
.-.+.+ .|+. -.+.++...++| .+++.+.... +.. + +.-+.+++.+.|++
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g------l~~--------~-~~~~~~~i~~~L~~ 137 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG------LLS--------S-KGQTFDEIKKELEE 137 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch------HHh--------c-CchHHHHHHHHHHH
Confidence 444433 3443 234555566677 5555553321 011 1 33467899999999
Q ss_pred CCCcE
Q 019957 312 CGLTN 316 (333)
Q Consensus 312 aGf~~ 316 (333)
.|+.+
T Consensus 138 ~GY~~ 142 (328)
T COG0270 138 LGYGV 142 (328)
T ss_pred cCCcc
Confidence 99973
No 387
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=89.62 E-value=0.2 Score=41.59 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=21.0
Q ss_pred eecccCCCcccc--ccCCCCccccccccCceeeCCCCccccC
Q 019957 60 LFSCPICYEPLI--RKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (333)
Q Consensus 60 ~l~CP~C~~~l~--~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (333)
-+.||.|++.-. ..... ......++|.+||++++.
T Consensus 6 y~~Cp~Cg~eev~hEVik~-----~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 6 YIECPSCGSEEVSHEVIKE-----RGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEECCCCCcchhhHHHHHh-----cCCceEEEccCCCcEeec
Confidence 478999994211 10000 011247899999999954
No 388
>PLN02740 Alcohol dehydrogenase-like
Probab=89.62 E-value=4.8 Score=37.76 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=60.4
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-----CCC-C-CC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PF 233 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~ 233 (333)
....++.+||=+|+|. |.++..+++......|+++|.++..++.+++. | --.++... +.+ + ..
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G-----a~~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G-----ITDFINPKDSDKPVHERIREM 264 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C-----CcEEEecccccchHHHHHHHH
Confidence 3445688999999875 77777777765223699999999888888652 1 11122111 100 0 01
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 275 (333)
..+.+|+|+-.- ..+ ..+......+++| |++++...
T Consensus 265 ~~~g~dvvid~~-----G~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 265 TGGGVDYSFECA-----GNV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred hCCCCCEEEECC-----CCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence 122588887532 222 4577777888886 98877543
No 389
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.45 E-value=0.21 Score=34.88 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=25.3
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (333)
++-||+|+-.|.-....+. .+-.|+.|+-++..+..
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGE 36 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGE 36 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchh
Confidence 3679999998865544322 25579999988876543
No 390
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=89.41 E-value=0.28 Score=39.57 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=26.9
Q ss_pred ccCeecccCCCccccccCCCCc------cccccccCceeeCCCCccccCcC
Q 019957 57 EGDLFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~------~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
+....+||.|++.+........ .....+...++|+.||..|....
T Consensus 88 ~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~Gs 138 (147)
T PF01927_consen 88 DPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWEGS 138 (147)
T ss_pred CCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEecccc
Confidence 3346789999997755432111 01111223778999999985543
No 391
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=89.33 E-value=0.32 Score=28.14 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=18.0
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+.|..|+........ ..++|+.||+.-
T Consensus 1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPG----------DPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence 368899987754432 468999999863
No 392
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=89.32 E-value=0.21 Score=36.70 Aligned_cols=37 Identities=16% Similarity=0.446 Sum_probs=25.1
Q ss_pred cccCeecccCCCccccc---cCCCCccccccccCceeeCCCCcccc
Q 019957 56 LEGDLFSCPICYEPLIR---KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 56 ~~~~~l~CP~C~~~l~~---~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
.....|.||.|++.... ... ....+.+.|.+||..|.
T Consensus 18 ~L~k~FtCp~Cghe~vs~ctvkk------~~~~g~~~Cg~CGls~e 57 (104)
T COG4888 18 VLPKTFTCPRCGHEKVSSCTVKK------TVNIGTAVCGNCGLSFE 57 (104)
T ss_pred cCCceEecCccCCeeeeEEEEEe------cCceeEEEcccCcceEE
Confidence 35568999999996433 111 11235789999999883
No 393
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.32 E-value=4.2 Score=36.99 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=75.4
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcceEEecc
Q 019957 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA 245 (333)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~ 245 (333)
+++|+=||.|.+..-+...| ...+.++|+++.+.+.-+.+. + ....+|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 68999999999999999998 346899999999888887763 2 67889998775 333 599998753
Q ss_pred cccc---------CCChHH-H---HHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957 246 ALHC---------WPSPSN-A---VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 246 vl~h---------~~d~~~-~---l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
--.- ..|+.. + +-++.+.++|.- ++.+.... + ... ...-..+.+...|++.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~-----l-~~~--------~~~~~~~~i~~~l~~l 133 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPG-----L-LSS--------KNGEVFKEILEELEEL 133 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGG-----G-GTG--------GGHHHHHHHHHHHHHT
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccceE--EEecccce-----e-ecc--------cccccccccccccccc
Confidence 3222 234432 2 333344557743 33333221 0 000 0002246788899999
Q ss_pred CCcEEEE
Q 019957 313 GLTNYTS 319 (333)
Q Consensus 313 Gf~~v~~ 319 (333)
|+.+...
T Consensus 134 GY~v~~~ 140 (335)
T PF00145_consen 134 GYNVQWR 140 (335)
T ss_dssp TEEEEEE
T ss_pred ceeehhc
Confidence 9876543
No 394
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.26 E-value=5.9 Score=36.18 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=58.4
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc---CCCCCCCCCCcce
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDA 240 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~ 240 (333)
.++.+||-.|+|. |..+..+++......+++++.++...+.+++. + . -.++..+ +..+....+.+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g---~--~~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G---A--DETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C---C--CEEEcCCchhhhhhhccCCCccE
Confidence 3677888888875 66777777664222689999888877755542 1 1 1112111 1112112235899
Q ss_pred EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
|+..... ...++.+.+.|+++|+++...
T Consensus 235 vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 8864321 235788899999999998754
No 395
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=89.05 E-value=0.26 Score=31.94 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=21.7
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
..+.||+||+.-......+.. ...-.+.|+.|.+...
T Consensus 3 ~Wi~CP~CgnKTR~kir~DT~---LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIREDTV---LKNFPLYCPKCKQETL 39 (55)
T ss_pred eEEECCCCCCccceeeecCce---eccccccCCCCCceEE
Confidence 457899999843222221121 1222688999987653
No 396
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=89.04 E-value=0.25 Score=38.11 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=22.9
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
-.||.||..+.-... ....|+.||..|+..
T Consensus 10 r~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence 369999998754433 478999999998554
No 397
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.82 E-value=9.4 Score=32.70 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=66.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCcC----HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR 230 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G----~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~ 230 (333)
++|..+..-.....|+++.++.| .++...+.+.-+.+++++-+++..+...++.+...++ .+.++|+.++. ++
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~--~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL--SDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc--cccceEEecCCHHH
Confidence 44444444444567999976544 2333333343355999999998888888888877664 44568888885 33
Q ss_pred CCCCCCCcceEEeccccccCCChHHHHHHHHHhc--cCCcEEEEEEe
Q 019957 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRIL--RSGGVFVGTTF 275 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L--kpgG~l~i~~~ 275 (333)
+-..-...|+++...= ...+.+++.+.+ .|.|-+++...
T Consensus 109 ~~~~~~~iDF~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDCK------REDFAARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred HHhhccCCCEEEEeCC------chhHHHHHHHHhccCCCceEEEEec
Confidence 2212246888876432 233333444444 35576666543
No 398
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=88.79 E-value=0.32 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.841 Sum_probs=11.0
Q ss_pred cccCCCccccccCCCCccccccccCceeeCC
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK 92 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~ 92 (333)
.||.|++.+...... -.++|.+
T Consensus 1 ~CP~C~s~l~~~~~e---------v~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEGE---------VDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CCT---------TCEEE--
T ss_pred CcCCCCCEeEcCCCC---------EeEECCC
Confidence 499999999765431 2677775
No 399
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.78 E-value=0.24 Score=36.66 Aligned_cols=27 Identities=33% Similarity=0.781 Sum_probs=21.5
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
+.+..||.|+..++.. .++|++|+..-
T Consensus 4 ~~~~~cPvcg~~~iVT-------------eL~c~~~etTV 30 (122)
T COG3877 4 KVINRCPVCGRKLIVT-------------ELKCSNCETTV 30 (122)
T ss_pred CCCCCCCcccccceeE-------------EEecCCCCceE
Confidence 4567899999988653 78999998753
No 400
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.68 E-value=7.3 Score=36.04 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=60.4
Q ss_pred hcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc----cCCC-C-CC
Q 019957 162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-PF 233 (333)
Q Consensus 162 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-l-p~ 233 (333)
....++.+||=.|+ | .|.++..+++.. +.++++++.++...+.+++.+.. -.++.. ++.+ + ..
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~ 224 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRY 224 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHH
Confidence 34566889999997 3 588888887774 44899999888877766532211 112211 1110 0 01
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
..+.+|+|+-.- . ...+....+.|++||.+++.-
T Consensus 225 ~~~gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 225 FPEGIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCCCcEEEEECC-----C--HHHHHHHHHHhccCCEEEEEC
Confidence 123688887432 2 236788899999999998754
No 401
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=88.68 E-value=0.22 Score=36.15 Aligned_cols=31 Identities=23% Similarity=0.701 Sum_probs=22.6
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
..+.||.|+..-..... .|++.|..|+..+.
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A 65 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTVA 65 (90)
T ss_pred CCccCCCCCCCceeeee---------eEEEEcCCCCCEEe
Confidence 35689999985443322 37999999998874
No 402
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=88.67 E-value=0.24 Score=46.42 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=25.2
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
.-.||.||..+...+. +.|+|+.||..++...
T Consensus 350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 3479999998866654 4899999999886554
No 403
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=88.37 E-value=0.22 Score=36.26 Aligned_cols=31 Identities=26% Similarity=0.864 Sum_probs=22.6
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
....||.|+..-..... .+++.|..|+..|.
T Consensus 34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A 64 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKFA 64 (91)
T ss_pred cCccCCCCCCCceEEEe---------eEEEEcCCCCCEEe
Confidence 35689999975433322 37999999998874
No 404
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.22 E-value=1.4 Score=39.08 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHH
Q 019957 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 259 (333)
Q Consensus 180 ~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~ 259 (333)
++..|.+.++..+|+|+|.++..++.+.+. .-+.-...+.+.+ ..+|+|+..--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~~----~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEAV----EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHHG----GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhHh----cCCCEEEEcCCHHH---HHHHHHH
Confidence 457788888788999999999998888652 1222222222222 24699887644333 2344555
Q ss_pred HHHhccCCcEEEE
Q 019957 260 ISRILRSGGVFVG 272 (333)
Q Consensus 260 ~~r~LkpgG~l~i 272 (333)
+...+++|+.+.=
T Consensus 65 ~~~~~~~~~iv~D 77 (258)
T PF02153_consen 65 IAPYLKPGAIVTD 77 (258)
T ss_dssp HHCGS-TTSEEEE
T ss_pred hhhhcCCCcEEEE
Confidence 5555555554433
No 405
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=88.21 E-value=0.27 Score=41.91 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=65.2
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (333)
+...+.+++.+.++.+.+|.--|.|..+..+.++.+...++++|.+|-+.+.|+....+.- .+.+.-+.+.+..++
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~~~~ 107 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSYIKS 107 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHHHHH
Confidence 3456677888889999999999999999999999888899999999988888876654321 223333334443332
Q ss_pred ------CCCCCcceEEeccc
Q 019957 233 ------FASGFVDAVHAGAA 246 (333)
Q Consensus 233 ------~~~~~fD~V~~~~v 246 (333)
..+.++|-|++...
T Consensus 108 l~~~~gl~~~~vDGiLmDlG 127 (303)
T KOG2782|consen 108 LIADTGLLDVGVDGILMDLG 127 (303)
T ss_pred HHHHhCCCcCCcceEEeecC
Confidence 45678888887443
No 406
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=88.19 E-value=3.8 Score=37.45 Aligned_cols=132 Identities=11% Similarity=0.143 Sum_probs=67.3
Q ss_pred HHHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHhcCcCCCCCeEEEEc-cCCCCCCC
Q 019957 158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENML-RQCYDFIKQDNTILTSNLALVRA-DVCRLPFA 234 (333)
Q Consensus 158 ~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~-~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~ 234 (333)
....+...++.+|+-+|+|. |.............+++.+|.++... +.+.+ + + ...+.. +..+.
T Consensus 169 a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~---g------~~~~~~~~~~~~--- 235 (311)
T cd05213 169 AEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-L---G------GNAVPLDELLEL--- 235 (311)
T ss_pred HHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-c---C------CeEEeHHHHHHH---
Confidence 33333334678999999986 65444333332134899999997654 33333 1 1 122221 22111
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 312 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a 312 (333)
-...|+|+..-.-.+. ...+..+....+.++.+++ +...+....+.... .+....++.++|+.+.+++
T Consensus 236 l~~aDvVi~at~~~~~---~~~~~~~~~~~~~~~~~vi-DlavPrdi~~~v~~------l~~v~l~~vDdl~~~~~~n 303 (311)
T cd05213 236 LNEADVVISATGAPHY---AKIVERAMKKRSGKPRLIV-DLAVPRDIEPEVGE------LEGVRLYTIDDLEEVVEEN 303 (311)
T ss_pred HhcCCEEEECCCCCch---HHHHHHHHhhCCCCCeEEE-EeCCCCCCchhhcc------CCCcEEEEHHHhHHHHHHh
Confidence 1357999986654443 3334444333322344444 54443222222110 1345678888888877653
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.14 E-value=2.7 Score=33.20 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=48.5
Q ss_pred hcccCCCeEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957 162 FKSAQGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (333)
+....+.++|=||+|. |. ....+...+ ..+++.+..+..-.+...+.+. ...+.++. +.++.-....+|
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~~------~~~~~~~~--~~~~~~~~~~~D 77 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALG-AKEITIVNRTPERAEALAEEFG------GVNIEAIP--LEDLEEALQEAD 77 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHT------GCSEEEEE--GGGHCHHHHTES
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHcC------ccccceee--HHHHHHHHhhCC
Confidence 3445678999999875 33 344555555 3469999998776555555441 23455543 344432234799
Q ss_pred eEEeccccccC
Q 019957 240 AVHAGAALHCW 250 (333)
Q Consensus 240 ~V~~~~vl~h~ 250 (333)
+|+..-...+.
T Consensus 78 ivI~aT~~~~~ 88 (135)
T PF01488_consen 78 IVINATPSGMP 88 (135)
T ss_dssp EEEE-SSTTST
T ss_pred eEEEecCCCCc
Confidence 99987666554
No 408
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=88.08 E-value=0.16 Score=31.23 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=21.4
Q ss_pred cccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
.||.|+..+..... .. .....|++|+-.+....
T Consensus 1 ~CP~C~~~l~~~~~-----~~--~~id~C~~C~G~W~d~~ 33 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----GD--VEIDVCPSCGGIWFDAG 33 (41)
T ss_pred CcCCCCcccceEEE-----CC--EEEEECCCCCeEEccHH
Confidence 59999997654332 11 13668999997775543
No 409
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=87.80 E-value=0.42 Score=32.09 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=19.8
Q ss_pred CeecccCCCccccccCCCC-ccccccccCceeeCCCCc
Q 019957 59 DLFSCPICYEPLIRKGPTG-LTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~ 95 (333)
.+..||.||++-....... ...... -.+.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 5678999987544333211 111000 2567999987
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.75 E-value=1.3 Score=41.65 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
++.+|+=+|+|. |..+...+... +.+|+++|.++..++.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456799999985 66665555543 3489999999877665544321 11111111111111011368999975
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
-.+.-.+.|.-+-++..+.+|||++++-..
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 422111223222356667789998776543
No 411
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.65 E-value=2.8 Score=37.71 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=56.0
Q ss_pred CeEEEEcCCc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEEec
Q 019957 168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 168 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~~~ 244 (333)
.+|+=+|.|- |.++..+.+.++...++|.|.+...++.+.+. ++.... .+.... .....|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEEe
Confidence 4688888885 67888888888877889999998888777652 111111 111011 13468999876
Q ss_pred cccccCCChHHHHHHHHHhccCCcEEE
Q 019957 245 AALHCWPSPSNAVAEISRILRSGGVFV 271 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~ 271 (333)
--+.. ...+++++...|++|..+.
T Consensus 72 vPi~~---~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 72 VPIEA---TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ccHHH---HHHHHHHhcccCCCCCEEE
Confidence 44332 2455666666666665544
No 412
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=87.55 E-value=0.25 Score=35.92 Aligned_cols=31 Identities=26% Similarity=0.786 Sum_probs=22.5
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
....||.|+..-..... .|++.|..|+..+.
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A 65 (90)
T PRK03976 35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKFA 65 (90)
T ss_pred cCccCCCCCCCceEEEE---------EEEEEcCCCCCEEe
Confidence 35689999875543322 37999999998873
No 413
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.43 E-value=13 Score=33.75 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=59.8
Q ss_pred hhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc----CCC-C-C
Q 019957 161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-P 232 (333)
Q Consensus 161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p 232 (333)
.....++.+||=.|. |.|..+..+++.. +.++++++.++...+.+++. | . . .++..+ ... . .
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G---a-~-~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G---F-D-VAFNYKTVKSLEETLKK 202 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C---C-C-EEEeccccccHHHHHHH
Confidence 344566789998884 4578887787764 44899999888877777541 1 1 1 111111 111 0 0
Q ss_pred CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...+.+|+|+-.- . ...+....+.|+++|+++...
T Consensus 203 ~~~~gvdvv~d~~-----G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 203 ASPDGYDCYFDNV-----G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred hCCCCeEEEEECC-----C--HHHHHHHHHHhCcCcEEEEec
Confidence 1124688887432 2 234678889999999998754
No 414
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.39 E-value=13 Score=31.94 Aligned_cols=103 Identities=19% Similarity=0.182 Sum_probs=60.1
Q ss_pred CCeEEEEcCCcC--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC----
Q 019957 167 GGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 234 (333)
Q Consensus 167 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 234 (333)
+.+||-.|++.| . +...+.+.+. +|++++.++..+....+.... ..++.++.+|+.+.. ++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 568999997543 2 3344445554 899999988766655443333 235788888887532 00
Q ss_pred -CCCcceEEeccccccC-----------------CChHHHHHHHHHhccCCcEEEEEEec
Q 019957 235 -SGFVDAVHAGAALHCW-----------------PSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 235 -~~~fD~V~~~~vl~h~-----------------~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
-+.+|.++........ .-+..+++.+...++++|.+++....
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 1346877765432110 01123355666677788887776643
No 415
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.29 E-value=1 Score=42.37 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=52.3
Q ss_pred CCCeEEEEccCCCCC--CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCC
Q 019957 218 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTS 280 (333)
Q Consensus 218 ~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~ 280 (333)
..++.++++++.+.- .+++++|.++.+..++++++. .+.++++.+.++|||++++-+......
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPW 340 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCC
Confidence 578999999997642 347899999999999998765 478999999999999999988766533
No 416
>PRK11524 putative methyltransferase; Provisional
Probab=87.14 E-value=0.53 Score=42.45 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=37.0
Q ss_pred CeEEEEccCCCC--CCCCCCcceEEeccccc---c-------C------CChHHHHHHHHHhccCCcEEEEEE
Q 019957 220 NLALVRADVCRL--PFASGFVDAVHAGAALH---C-------W------PSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 220 ~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~---h-------~------~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...++++|..+. .+++++||+|++.=-.. . . .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446777887663 35577899999842110 0 0 011468899999999999999853
No 417
>PLN00203 glutamyl-tRNA reductase
Probab=87.08 E-value=4.6 Score=39.71 Aligned_cols=116 Identities=10% Similarity=0.112 Sum_probs=57.9
Q ss_pred HHHHHHhhcc--cCCCeEEEEcCCc-CHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 155 FKMAQEYFKS--AQGGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 155 ~~~~~~~l~~--~~~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
++.....++. ..+.+|+=||+|. |.. +..+...+ ..+++.++.+....+...+.+. +......++.+
T Consensus 252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~--------g~~i~~~~~~d 322 (519)
T PLN00203 252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP--------DVEIIYKPLDE 322 (519)
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC--------CCceEeecHhh
Confidence 3444444442 3467899999975 443 33444444 3479999999876655544321 11121222222
Q ss_pred CCCCCCCcceEEeccccccCCChHHHHHHHHHhccC-CcEEEEEEecccC
Q 019957 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYT 279 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~~ 279 (333)
+.-.-...|+|++.-.-.+---....++++...-+. +..+++.+...+.
T Consensus 323 l~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 323 MLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 221124689998754333211123334444322111 3346676766553
No 418
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=86.96 E-value=0.54 Score=25.19 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=14.7
Q ss_pred ccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (333)
|-.|+..+.-... ...+.|++||.
T Consensus 1 C~sC~~~i~~r~~---------~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQ---------AVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCccc---------CceEeCCCCCC
Confidence 5567776654332 13688888873
No 419
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.93 E-value=0.51 Score=40.68 Aligned_cols=41 Identities=17% Similarity=0.472 Sum_probs=22.8
Q ss_pred eecccCCCccccccC----------------CCCccccccccCceeeCCCCccccCc
Q 019957 60 LFSCPICYEPLIRKG----------------PTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~----------------~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
-+.||+|++.+.... +.....+-+......|++||..+...
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 468999999542210 00111222223466899998776444
No 420
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.79 E-value=8.8 Score=35.31 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=57.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC---C--CCCCCC
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASGF 237 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l--p~~~~~ 237 (333)
..++.+||=.|+|. |.++..+++......+++++.++..++.+++. | --.++..+-.. + ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G-----AMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C-----CceEecCcccCHHHHHHHhcCCC
Confidence 34677898889876 66777777764222478999998887776542 1 01111111000 0 011235
Q ss_pred cc-eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 238 VD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 238 fD-~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+| +|+- .+.. ...+.+..+.|++||.+++...
T Consensus 229 ~d~~v~d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 229 FDQLILE-----TAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCeEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 77 5542 2222 3467888899999999988753
No 421
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.74 E-value=11 Score=34.14 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=60.1
Q ss_pred hhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CC
Q 019957 161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF 233 (333)
Q Consensus 161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~ 233 (333)
.....++.+||=.|. |.|..+..+++.. +.++++++.++...+.+++. | . -.++...-.++ ..
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~----G---a--~~vi~~~~~~~~~~v~~~ 207 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL----G---F--DAVFNYKTVSLEEALKEA 207 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C---C--CEEEeCCCccHHHHHHHH
Confidence 344556788988884 4577777777774 45899999888877777652 1 1 11221111111 01
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
..+.+|+|+-.-. ...+....+.|+++|.++...
T Consensus 208 ~~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 208 APDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 1246888874321 245788899999999998653
No 422
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=86.66 E-value=0.38 Score=31.59 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=25.0
Q ss_pred ccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
..+.+.|-.|++....... ..++|..||+.-
T Consensus 17 ~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 17 ATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred ccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 4678899999998866554 489999999864
No 423
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=86.65 E-value=0.39 Score=31.77 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=18.0
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (333)
...|.||.||..++..=..= .-....+.|++||.
T Consensus 23 ~~~F~CPnCG~~~I~RC~~C----Rk~~~~Y~CP~CGF 56 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEKC----RKQSNPYTCPKCGF 56 (59)
T ss_pred cCEeeCCCCCCeeEeechhH----HhcCCceECCCCCC
Confidence 35678888887632211100 00124677888875
No 424
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=86.60 E-value=0.36 Score=38.46 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=25.2
Q ss_pred ecccCCCccccccCCCCc-cccccccCceeeCCCCccccCcCCc
Q 019957 61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY 103 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~-~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (333)
+.||.|++.-....++.. ..+......-.|.+||+.|..-+-+
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~ 44 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA 44 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence 579999996554433211 1111222245699999999654433
No 425
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.53 E-value=6.1 Score=37.09 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=54.2
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHHHhcCcCCCCCeE-EEEc-cCCCCCCCCCCcce
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLA-LVRA-DVCRLPFASGFVDA 240 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~~~i~-~~~~-d~~~lp~~~~~fD~ 240 (333)
.++.+||-.|+|. |.++..+++.. +.++++++.+++. .+.+++ .| .+ ++.. +...+.-..+.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG------a~~~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG------ADSFLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC------CcEEEcCcCHHHHHHhhCCCcE
Confidence 3577888888875 77777777764 3478999877543 344432 12 11 1110 10011000124788
Q ss_pred EEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
|+-.- .. ...+....+.+++||.++....
T Consensus 246 vid~~-----G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 246 IIDTV-----SA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEECC-----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 77532 22 2357788899999999987653
No 426
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=86.52 E-value=0.21 Score=35.83 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=17.2
Q ss_pred ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
....|.||.|++.-.....- ......+.+.|..||..|...
T Consensus 19 l~~~F~CPfC~~~~sV~v~i---dkk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 19 LPKVFDCPFCNHEKSVSVKI---DKKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp -SS----TTT--SS-EEEEE---ETTTTEEEEEESSS--EEEEE
T ss_pred CCceEcCCcCCCCCeEEEEE---EccCCEEEEEecCCCCeEEEc
Confidence 34789999999642221100 001223689999999888544
No 427
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.25 E-value=12 Score=33.93 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=58.9
Q ss_pred hcccCCCeEEEEcCC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcc
Q 019957 162 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVD 239 (333)
Q Consensus 162 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD 239 (333)
....++.+||-+|+| .|..+..+++.. +.++++++.++...+.+++. .. . .++...-.... ...+.+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g~-------~-~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-GA-------D-EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-CC-------c-EEeccCCcchHHhccCCCC
Confidence 344567789889987 577666666663 34899999998887776442 10 1 11111100000 0124588
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+++.... . ...+.++.+.|+++|.++...
T Consensus 228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEEECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence 8875421 1 235788889999999988765
No 428
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=86.20 E-value=0.63 Score=34.68 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=22.5
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
..++.||.|++....... .. ..+...|++||..+.
T Consensus 19 pt~f~CP~Cge~~v~v~~-~k-----~~~h~~C~~CG~y~~ 53 (99)
T PRK14892 19 PKIFECPRCGKVSISVKI-KK-----NIAIITCGNCGLYTE 53 (99)
T ss_pred CcEeECCCCCCeEeeeec-CC-----CcceEECCCCCCccC
Confidence 468999999963221111 11 135889999998773
No 429
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.18 E-value=9.2 Score=35.20 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=66.2
Q ss_pred HHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CC-----
Q 019957 159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL----- 231 (333)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l----- 231 (333)
.+-.+..++.+|.-+|||. |.....-++......++++|+++.-++.|++ ..-.+++...-. ++
T Consensus 178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~---------fGAT~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK---------FGATHFVNPKEVDDVVEAIV 248 (366)
T ss_pred hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh---------cCCceeecchhhhhHHHHHH
Confidence 3345567889999999986 7666666665446699999999999999987 233344433111 00
Q ss_pred CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
...++..|.++ +-.-+.. .++.....++++|..++.-..
T Consensus 249 ~~T~gG~d~~~-----e~~G~~~-~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 249 ELTDGGADYAF-----ECVGNVE-VMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred HhcCCCCCEEE-----EccCCHH-HHHHHHHHHhcCCeEEEEecC
Confidence 12233455553 3333333 688888888889998876543
No 430
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=86.11 E-value=0.54 Score=29.79 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=19.4
Q ss_pred cCeecccCCCcc-ccccCCCCccccccccCceeeCCCCccc
Q 019957 58 GDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 58 ~~~l~CP~C~~~-l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
...--||.||.. +..... ..+.|..||...
T Consensus 17 rk~~~CPrCG~gvfmA~H~----------dR~~CGkCgyTe 47 (51)
T COG1998 17 RKNRFCPRCGPGVFMADHK----------DRWACGKCGYTE 47 (51)
T ss_pred EccccCCCCCCcchhhhcC----------ceeEeccccceE
Confidence 344469999963 322222 389999998654
No 431
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.98 E-value=4.2 Score=31.06 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=58.9
Q ss_pred CCeEEEEcCCcC-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEec
Q 019957 167 GGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 244 (333)
Q Consensus 167 ~~~vLDiGcG~G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 244 (333)
.++|.|||-|-= ..+..|++.|. .++++|+++. .+ ..++.++..|+.+.-.. =...|+|.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence 459999988764 35667777765 9999999886 11 34688999999874321 1346777764
Q ss_pred cccccCCChHHHHHHHHHhccC-CcEEEEEEecc
Q 019957 245 AALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 277 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~ 277 (333)
. -|..+.+.+.++-+. |..+++.....
T Consensus 78 R------pppEl~~~ildva~aVga~l~I~pL~G 105 (129)
T COG1255 78 R------PPPELQSAILDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred C------CCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 3 355666666666643 55677665444
No 432
>PLN02827 Alcohol dehydrogenase-like
Probab=85.98 E-value=9.5 Score=35.79 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=57.9
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-----cCCC-C-CCC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-----DVCR-L-PFA 234 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-----d~~~-l-p~~ 234 (333)
...++.+||-+|+|. |.++..+++......++++|.++...+.+++. | . -.++.. +... + ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G---a--~~~i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G---V--TDFINPNDLSEPIQQVIKRMT 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C---C--cEEEcccccchHHHHHHHHHh
Confidence 345678999999875 67777777664233688999988877777542 1 1 111111 1100 0 011
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEE
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT 274 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~ 274 (333)
.+.+|+|+-.- ..+ ..+....+.+++| |++++.-
T Consensus 261 ~~g~d~vid~~-----G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 GGGADYSFECV-----GDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCCEEEECC-----CCh-HHHHHHHHhhccCCCEEEEEC
Confidence 22588886432 222 3477788889998 9997644
No 433
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.96 E-value=11 Score=33.89 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=54.2
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc----------CcCC-------CCCeEEEEccC
Q 019957 168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD----------NTIL-------TSNLALVRADV 228 (333)
Q Consensus 168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~----------~~~~-------~~~i~~~~~d~ 228 (333)
.+|.=||+|. | .++..++..+. +|+.+|.++..++.+++.+... +... ..++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 3688889986 4 45566666665 8999999999988776543321 1000 001111 1122
Q ss_pred CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEE
Q 019957 229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271 (333)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~ 271 (333)
.. -...|+|+..- .+....-..+++++.+.++++..++
T Consensus 81 ~~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ES----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 12467776542 1221112567788888888877654
No 434
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.82 E-value=15 Score=34.79 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=60.7
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc----cCCC-CC--CCC
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-LP--FAS 235 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-lp--~~~ 235 (333)
..++.+||=.|+|. |.++..+++......++.+|.++..++.+++. | +..+.. ++.+ +. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G------a~~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G------CETVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C------CeEEecCCcccHHHHHHHHcCC
Confidence 45577877788875 77777777664233466778888888777762 1 122211 1100 10 112
Q ss_pred CCcceEEecccccc--------CCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 236 GFVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 236 ~~fD~V~~~~vl~h--------~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
..+|+|+-.-.-.. -.++...+++..+++++||.+++.-..
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 35888875332110 012235789999999999999886543
No 435
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=85.62 E-value=0.36 Score=38.92 Aligned_cols=41 Identities=20% Similarity=0.444 Sum_probs=25.5
Q ss_pred cccccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
.......+.||.|+........... .. ..+.+.|+.||..-
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~~ea~~~--~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTFLEANQL--LD-MDGTFTCPRCGEEL 133 (147)
T ss_pred cccCCcEEECcCCCCEeeHHHHHHh--cC-CCCcEECCCCCCEE
Confidence 3445678999999986544322111 11 14569999999753
No 436
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.60 E-value=15 Score=34.16 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=54.4
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEE
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 242 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~ 242 (333)
.++.+||-+|+|. |.++..+++.. +.++++++.+++....+.+.+ | . . .++. .+...+.-....+|+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---G---a-~-~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---G---A-D-DYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---C---C-c-EEecCCChHHHHHhcCCCcEEE
Confidence 4577888888765 77777777764 347888887776554443322 1 1 1 1111 11011100112478776
Q ss_pred eccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
-. +.. ...+..+.+.|++||+++....
T Consensus 250 d~-----~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DT-----VPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EC-----CCc-hHHHHHHHHHhccCCEEEEECC
Confidence 43 221 2357788899999999887653
No 437
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.56 E-value=13 Score=27.91 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=52.1
Q ss_pred CCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcceEEeccccc
Q 019957 175 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALH 248 (333)
Q Consensus 175 cG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~~vl~ 248 (333)
||.|.++..+.+.. ...+++.+|.++...+.+++. .+.++.+|..+.. ..-.+.|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 45555555554431 123899999999988877752 4779999997742 22346777776432
Q ss_pred cCCChH--HHHHHHHHhccCCcEEEEEEe
Q 019957 249 CWPSPS--NAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 249 h~~d~~--~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+.. ..+....+-+.|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 332 234445566677777777653
No 438
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.43 E-value=2.1 Score=39.94 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=80.4
Q ss_pred HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-------HhcCcCCCCCeEEEEcc
Q 019957 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-------KQDNTILTSNLALVRAD 227 (333)
Q Consensus 155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~~~~~~~i~~~~~d 227 (333)
+..+.+.++..++....|+|.|.|.....++..+....-+|+++.......+..+. +-.|- ....+..+.++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gs 259 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGS 259 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccc
Confidence 34555666777888999999999999998888765556788887654333333221 11221 13356777787
Q ss_pred CCCCCC---CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957 228 VCRLPF---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (333)
Q Consensus 228 ~~~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 278 (333)
+....+ -....++|+++.+... ++...-+.++..-+++|-+++-..+...
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 765321 2346788888776543 3333446688889999999988776554
No 439
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=85.32 E-value=0.51 Score=37.62 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=25.3
Q ss_pred ecccCCCccccccCCCCc-cccccccCceeeCCCCccccCcCCc
Q 019957 61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY 103 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~-~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (333)
+.||-|++.-....++.. ..+......-.|.+||..|...+-+
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv 44 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA 44 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence 579999996544433211 1121222244699999999655443
No 440
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=85.27 E-value=8.9 Score=29.84 Aligned_cols=69 Identities=17% Similarity=0.059 Sum_probs=52.7
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
++-.|+|+.++--+- .|....|-.+.+.|..+|.+++.+|... ...+.++.++.+....+|+
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g-----------------r~g~V~~~~I~eaA~taGL 104 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG-----------------RPGHVEPSDIREAAPTAGL 104 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC-----------------CCCCCCHHHHHHHHhhcCC
Confidence 457899888665332 2556778888899999999999998653 1245688999999999999
Q ss_pred cEEEEEE
Q 019957 315 TNYTSKV 321 (333)
Q Consensus 315 ~~v~~~~ 321 (333)
...+...
T Consensus 105 ~~t~~~~ 111 (127)
T PF11253_consen 105 VQTKSCA 111 (127)
T ss_pred eeeeeec
Confidence 8877644
No 441
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=85.20 E-value=0.84 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.608 Sum_probs=18.2
Q ss_pred eecccCCCccc-cccCCCCccccccccCceeeCCCC
Q 019957 60 LFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCD 94 (333)
Q Consensus 60 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~ 94 (333)
.+.||.|++.. ......+.+. ...++|..|.
T Consensus 5 ~v~CP~C~s~~~v~k~G~~~~G----~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKSPSG----HQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCCCCCC----CEeEecCcCC
Confidence 46799999966 3322211111 1478899884
No 442
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.08 E-value=4.4 Score=35.78 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=63.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (333)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (333)
.++..-.|+|+..|.++..|.+++- .|+++|.-+ |....-. ...++....|-..+.......|-.+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence 4577899999999999999999865 899999644 3322222 456777777876654345678888876
Q ss_pred cccccCCChHHHHHHHHHhccCC
Q 019957 245 AALHCWPSPSNAVAEISRILRSG 267 (333)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~Lkpg 267 (333)
.| ..|.++-..+...|..|
T Consensus 278 mV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 278 MV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred hh----cCcHHHHHHHHHHHHcc
Confidence 55 67887777777777654
No 443
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.02 E-value=11 Score=34.62 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=59.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-CCC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FAS 235 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~ 235 (333)
...++.+||-.|+|. |..+..+++......++++|.++...+.+++. | --.++...-..+ . ...
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G-----ATDIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C-----CceEecCCCCCHHHHHHHHhCC
Confidence 345677888888764 66777777764333699999988777766642 1 111221111111 0 123
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
..+|+|+.... . ...+.++.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence 46898875322 1 245788999999999988654
No 444
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.85 E-value=19 Score=33.21 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----C-C-CC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----P-F-AS 235 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p-~-~~ 235 (333)
...++.+||=+|+|. |..+..+++.. +.+++++|.++..++.+++. .. ..-+.....+..++ . + ..
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga-----~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF-GA-----DLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CC-----ceEecCccccHHHHHHHHHhhccc
Confidence 445678999999976 77777777764 34899999999888877652 11 00011001000000 0 0 11
Q ss_pred CCcc----eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 236 GFVD----AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 236 ~~fD----~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
..+| +|+ +.... ...+....+.|++||++++...
T Consensus 236 ~g~d~~~d~v~-----d~~g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 236 RGLRSTGWKIF-----ECSGS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCCCCCcCEEE-----ECCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence 2344 443 33222 3457778889999999988654
No 445
>PHA02998 RNA polymerase subunit; Provisional
Probab=84.46 E-value=0.58 Score=38.26 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred CeecccCCCccccc-cCCCCccccccccCceeeCCCCccccCc
Q 019957 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
....||.|++.-.. ......+..+-....+.|.+||+.|..+
T Consensus 142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 56789999984211 0000111222333578999999998544
No 446
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=84.21 E-value=11 Score=35.92 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCC-cCHHH-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957 153 EEFKMAQEYFKSAQGGLLVDVSCG-SGLFS-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (333)
Q Consensus 153 ~~~~~~~~~l~~~~~~~vLDiGcG-~G~~~-~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (333)
..++...+.+....+.++|=||.| .|.+. .+|...+ ...++...-+..-.....+++ +..+ ..+.+
T Consensus 164 aAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g-~~~i~IaNRT~erA~~La~~~---------~~~~--~~l~e 231 (414)
T COG0373 164 AAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKG-VKKITIANRTLERAEELAKKL---------GAEA--VALEE 231 (414)
T ss_pred HHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHh---------CCee--ecHHH
Confidence 344555666665567899999999 67654 4555555 458888887765433333321 1112 23333
Q ss_pred CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 310 (333)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~ 310 (333)
++-.-..+|+|++...-.|. .---..+.+.+++.-.+++.+...+....+-.. .....+.++.+++....+
T Consensus 232 l~~~l~~~DvVissTsa~~~---ii~~~~ve~a~~~r~~~livDiavPRdie~~v~------~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 232 LLEALAEADVVISSTSAPHP---IITREMVERALKIRKRLLIVDIAVPRDVEPEVG------ELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred HHHhhhhCCEEEEecCCCcc---ccCHHHHHHHHhcccCeEEEEecCCCCCCcccc------CcCCeEEEehhhHHHHHH
Confidence 33223579999986543332 111233444444322277777766533322211 012344556666655543
No 447
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.15 E-value=12 Score=33.86 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=59.8
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFAS 235 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~ 235 (333)
....++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++. + . . .++..+-... ....
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~----g---~-~-~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL----G---A-T-ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh----C---C-e-EEecCCCCCHHHHHHhcC
Confidence 3445678999998753 66666666664 334 88999888877776442 1 1 1 2222111110 1123
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
+.+|+|+.... ....+.++.+.|+++|.++....
T Consensus 225 ~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 225 YGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 56899985421 13467888999999999987643
No 448
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=84.07 E-value=18 Score=33.72 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=59.7
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-cc----CCC-C-CC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-AD----VCR-L-PF 233 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d----~~~-l-p~ 233 (333)
....++.+||=+|+|. |.++..+++.....+|+++|.++..++.+++. | -. .++. .+ +.. + ..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----G----AT-DCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CC-eEEcccccchhHHHHHHHH
Confidence 3445678999999875 77777777765233799999999888887652 1 11 1111 10 000 0 01
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 275 (333)
..+.+|+|+-. +.. ...+.+..+.+++| |++++...
T Consensus 252 ~~~g~d~vid~-----~G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 252 TDGGVDYSFEC-----IGN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred hCCCCCEEEEC-----CCC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 12357877643 222 23577788899886 98876654
No 449
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=84.01 E-value=0.64 Score=36.57 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=27.0
Q ss_pred cCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCc
Q 019957 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY 103 (333)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (333)
.....||.|++........... . ...++|..|+..|....|+
T Consensus 28 ~~~~~cP~C~s~~~~k~g~~~~--~--~qRyrC~~C~~tf~~~~~~ 69 (129)
T COG3677 28 ITKVNCPRCKSSNVVKIGGIRR--G--HQRYKCKSCGSTFTVETGS 69 (129)
T ss_pred cccCcCCCCCccceeeECCccc--c--ccccccCCcCcceeeeccC
Confidence 3456899999976222111111 0 3578999999999776665
No 450
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=83.88 E-value=2.6 Score=37.92 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=44.3
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 314 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf 314 (333)
.+.||+|+.+...-|+-.|. +.++++|+|+|++.+... ...+-.+.... -.+.+.++++++||
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf---mvdLrKEq~~~---------F~~kv~eLA~~aG~ 282 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF---MVDLRKEQLQE---------FVKKVKELAKAAGF 282 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh---heeCCHHHHHH---------HHHHHHHHHHHCCC
Confidence 46799999877766665554 777899999999987421 11110111111 13578999999999
Q ss_pred cEEE
Q 019957 315 TNYT 318 (333)
Q Consensus 315 ~~v~ 318 (333)
+.+.
T Consensus 283 ~p~~ 286 (289)
T PF14740_consen 283 KPVT 286 (289)
T ss_pred cccc
Confidence 8754
No 451
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.71 E-value=20 Score=32.77 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=59.7
Q ss_pred hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-------C
Q 019957 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------L 231 (333)
Q Consensus 161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------l 231 (333)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++. + .. .++..+-.. +
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~~ 226 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL----G---AT--HTVNVRTEDTPESAEKI 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc----C---Cc--EEeccccccchhHHHHH
Confidence 34455677888888765 67777777764 335 88998888777666542 1 11 111111111 0
Q ss_pred --CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
......+|+|+-... ....+.+..+.|+++|+++...
T Consensus 227 ~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 227 AELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 122345999986432 1235788899999999988654
No 452
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.60 E-value=0.65 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=19.8
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (333)
.++|+.|+..+........ .....|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISD------DPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEecCC------CCCCCCCCCCC
Confidence 5789999996644322100 24778999997
No 453
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.54 E-value=33 Score=31.46 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=59.0
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CC-C-CCCCC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL-P-FASGF 237 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l-p-~~~~~ 237 (333)
....++.+||=.|+|. |..+..+++......+++++.++...+.+++. |. ..-+.....++. .+ . ...+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga--~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GA--TIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC--CEEECCCccCHHHHHHHHhCCCC
Confidence 3445677888888653 56666666664222789999888877777542 10 000010111110 00 0 11234
Q ss_pred cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
+|+|+-... ....++.+.+.|+++|.++.....
T Consensus 242 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 242 VDVSFDCAG------VQATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CCEEEECCC------CHHHHHHHHHhccCCCEEEEEccC
Confidence 898875422 123578888999999998876543
No 454
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.53 E-value=17 Score=29.86 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957 152 DEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (333)
Q Consensus 152 ~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (333)
++..+.+.+.+.. ....+|+-|||=+-+.. +.+ ..+..+++.+|++...... ..+ .|+.-|.
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~ 73 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQF------------GGD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhc------------CCc-ceEECCC
Confidence 3344455444443 34578999988774433 333 3345689999998754321 122 3555555
Q ss_pred CC---CC--CCCCCcceEEeccccccCCC-h-HHHHHHHHHhccCCcEEEEEEe
Q 019957 229 CR---LP--FASGFVDAVHAGAALHCWPS-P-SNAVAEISRILRSGGVFVGTTF 275 (333)
Q Consensus 229 ~~---lp--~~~~~fD~V~~~~vl~h~~d-~-~~~l~~~~r~LkpgG~l~i~~~ 275 (333)
.. +| + .++||+|++.=-+ +.+ - .+....++-++|+++.+++.+.
T Consensus 74 ~~p~~~~~~l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 74 NEPEELPEEL-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CChhhhhhhc-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 43 23 2 5799999984333 111 1 2334555556688899998874
No 455
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=83.40 E-value=1.2 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=18.3
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (333)
-.||.|++.-..... . .-..+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFr~~-d----~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRFD-D----KDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCccccccc-c----CCCCcCEEeCCCCC
Confidence 479999994322211 1 11237899999974
No 456
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.38 E-value=13 Score=33.99 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=57.0
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC------CCCCC
Q 019957 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 236 (333)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 236 (333)
..++.+||-.|+|. |..+..+++......+++++.++...+.+++. + ...++...-..+ -...+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-----ATDIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-----CcEEEcCCcchHHHHHHHHcCCC
Confidence 34577888877753 66777777764223788888887766665542 1 111221111110 01235
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.+|+|+.... ....+.+..+.|+++|+++...
T Consensus 236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6898885421 1246888899999999988654
No 457
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=83.31 E-value=0.73 Score=31.76 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=20.3
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
.-.||.||....... ....+.|++||..+
T Consensus 28 Sq~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRR---------SGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCccccccccc---------ccceEEcCCCCCEE
Confidence 346999999765411 12489999999864
No 458
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.21 E-value=10 Score=36.06 Aligned_cols=89 Identities=10% Similarity=0.057 Sum_probs=55.2
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (333)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (333)
..+.+|+=+|+|. |......++.. +.+|+++|.++.....+.. .+..+. +.++. -...|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----------~G~~v~--~leea---l~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----------DGFRVM--TMEEA---AKIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----------cCCEeC--CHHHH---HhcCCEEEE
Confidence 4678999999997 66655555543 4589999998865444432 122222 22221 135698876
Q ss_pred ccccccCCChHHHHH-HHHHhccCCcEEEEEEe
Q 019957 244 GAALHCWPSPSNAVA-EISRILRSGGVFVGTTF 275 (333)
Q Consensus 244 ~~vl~h~~d~~~~l~-~~~r~LkpgG~l~i~~~ 275 (333)
.. . ....+. +....+|+|++++....
T Consensus 257 aT-----G-~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 257 AT-----G-NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CC-----C-CHHHHHHHHHhcCCCCcEEEEECC
Confidence 32 1 234454 47889999998887653
No 459
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.03 E-value=25 Score=32.40 Aligned_cols=94 Identities=24% Similarity=0.236 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--------C-CCC
Q 019957 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--------P-FAS 235 (333)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--------p-~~~ 235 (333)
++.+||=.|+|. |..+..+++.....++++++.++.....+++ .| .. .++...-... . ...
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g---~~--~vi~~~~~~~~~~~~~i~~~~~~ 247 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FG---AD--ATIDIDELPDPQRRAIVRDITGG 247 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cC---CC--eEEcCcccccHHHHHHHHHHhCC
Confidence 677888888764 6666667776522389999988877665543 11 11 1111110000 0 112
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
..+|+|+-... ....+.+..+.|+++|+++...
T Consensus 248 ~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 46898885321 1235778889999999998764
No 460
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.92 E-value=16 Score=32.08 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=58.2
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (333)
....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++. |. ...+ ... .........+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~----g~--~~~~--~~~--~~~~~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL----GP--ADPV--AAD--TADEIGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc----CC--Cccc--ccc--chhhhcCCCCC
Confidence 3445678888888865 66666666664 335 99999988887766652 10 0011 100 00001234689
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+|+.... ....+.+..+.|+++|.++...
T Consensus 162 ~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 8875321 1235788889999999988654
No 461
>PHA02768 hypothetical protein; Provisional
Probab=82.91 E-value=0.28 Score=32.16 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=25.5
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCcee
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~ 105 (333)
-+.||.||..+.....-..... .....+.|.+|+..|.....++.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r-~H~k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLR-KHNTNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHH-hcCCcccCCcccceecccceeEE
Confidence 3689999996543221000000 11136799999998875554443
No 462
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=82.89 E-value=0.72 Score=38.25 Aligned_cols=26 Identities=38% Similarity=0.898 Sum_probs=21.2
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
-.|+.|++.|.... ..+.|++||+.-
T Consensus 150 A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE 175 (188)
T COG1096 150 ARCSRCRAPLVKKG-----------NMLKCPNCGNTE 175 (188)
T ss_pred EEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence 36999999998743 389999999764
No 463
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.84 E-value=20 Score=33.33 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=59.6
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-----CCC-C-CC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PF 233 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~ 233 (333)
....++.+||=+|+|. |.++..+++......++++|.++..++.+++. | .. .++... +.. + ..
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~v~~~ 252 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----G----AT-DCVNPKDHDKPIQQVLVEM 252 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-EEEcccccchHHHHHHHHH
Confidence 3445678899888765 66777777764223699999999888777542 1 11 112111 100 0 01
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 275 (333)
..+.+|+|+-.- .. ...+....+.|+++ |++++...
T Consensus 253 ~~~g~d~vid~~-----g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 TDGGVDYTFECI-----GN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred hCCCCcEEEECC-----CC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 123688887532 22 24577888899887 98887653
No 464
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.67 E-value=0.49 Score=37.89 Aligned_cols=47 Identities=30% Similarity=0.597 Sum_probs=28.0
Q ss_pred CeecccCCCccccccCCC--CccccccccCceeeCCCCccccCcCCcee
Q 019957 59 DLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~--~~~~~~~~~~~~~C~~C~~~~~~~~g~~~ 105 (333)
.+..||.|+.+..-.... ...++.-+.-.-.|.+||+.||..+..++
T Consensus 38 tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~ 86 (158)
T PF10083_consen 38 TITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALE 86 (158)
T ss_pred HHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHH
Confidence 466899999876332111 11111222234579999999998765443
No 465
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.52 E-value=11 Score=36.98 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCcCHHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CCCC
Q 019957 166 QGGLLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASG 236 (333)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~ 236 (333)
.+++||--| |+|.++..+. +.+ ..+++.+|.++..+......+...-. ...+.++.+|+.+.. +.+-
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhcC
Confidence 466787776 4555555544 444 45899999999988888877766321 467889999998753 4566
Q ss_pred CcceEEeccccccCC
Q 019957 237 FVDAVHAGAALHCWP 251 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~ 251 (333)
+.|+|+....+-|+|
T Consensus 325 kvd~VfHAAA~KHVP 339 (588)
T COG1086 325 KVDIVFHAAALKHVP 339 (588)
T ss_pred CCceEEEhhhhccCc
Confidence 799999999999997
No 466
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=82.49 E-value=1.1 Score=28.16 Aligned_cols=29 Identities=31% Similarity=0.708 Sum_probs=18.9
Q ss_pred CeecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (333)
+-+.||.|++.-..... . .+.++|..|++
T Consensus 17 ~g~~CP~Cg~~~~~~~~-~-------~~~~~C~~C~~ 45 (46)
T PF12760_consen 17 DGFVCPHCGSTKHYRLK-T-------RGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCCCeeeEEeC-C-------CCeEECCCCCC
Confidence 34779999986221111 0 25899999986
No 467
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=82.47 E-value=0.77 Score=28.60 Aligned_cols=14 Identities=21% Similarity=0.748 Sum_probs=10.5
Q ss_pred ceeeCCCCccccCc
Q 019957 87 GFKCRKCDKTYSSK 100 (333)
Q Consensus 87 ~~~C~~C~~~~~~~ 100 (333)
.+.|++||..+...
T Consensus 32 ~~~C~~CGE~~~~~ 45 (46)
T TIGR03831 32 ALVCPQCGEEYLDA 45 (46)
T ss_pred ccccccCCCEeeCC
Confidence 56799999887543
No 468
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=82.47 E-value=1.1 Score=33.48 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=23.6
Q ss_pred CeecccCCCcccccc-CCCCccccccccCceeeCCCCcccc
Q 019957 59 DLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 59 ~~l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (333)
..-.||.|++.-... ...+........-.+.|.+|+|.|.
T Consensus 72 s~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~wt 112 (113)
T KOG2691|consen 72 SDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRWT 112 (113)
T ss_pred ccccCCccCCcceEEEecccccccceEEEEEEecccccccc
Confidence 567899999842211 1112222333344678999999873
No 469
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=82.41 E-value=4.4 Score=32.52 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeC
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~ 198 (333)
+.+...+... .+-|||+|=|+|..-..|.+..|+.+++.+|.
T Consensus 19 ~~a~~~v~~~-~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 19 NWAAAQVAGL-PGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHhcCC-CCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 3334444433 35899999999999999999999999999996
No 470
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.32 E-value=29 Score=30.52 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C----
Q 019957 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 233 (333)
Q Consensus 166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 233 (333)
.++++|-.|++.| .++..+.+.|. +|+.++.++..++...+.+.... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 3567888887654 34556666665 89999999877766665554321 236788889987642 1
Q ss_pred CCCCcceEEecccc
Q 019957 234 ASGFVDAVHAGAAL 247 (333)
Q Consensus 234 ~~~~fD~V~~~~vl 247 (333)
.-+..|+++.+...
T Consensus 82 ~~g~iD~lv~nag~ 95 (263)
T PRK08339 82 NIGEPDIFFFSTGG 95 (263)
T ss_pred hhCCCcEEEECCCC
Confidence 11468888876543
No 471
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.82 E-value=20 Score=32.67 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=59.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCC--CCCCCCc
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRL--PFASGFV 238 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~l--p~~~~~f 238 (333)
...++.+||-.|+|. |..+..+++.. +.+++++..++...+.+++. .. ..-+.....++ ..+ ......+
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~-g~-----~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFAREL-GA-----DDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHh-CC-----CEEecCcccCHHHHHHHHhCCCCC
Confidence 345677899998764 67777777763 45899998888777766442 10 00011111111 001 0123458
Q ss_pred ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
|+|+.... ....+.++.+.|+++|.++...
T Consensus 229 d~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 99986421 1345788899999999988654
No 472
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=81.60 E-value=0.9 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=22.7
Q ss_pred ccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
.+..+.|-.|+..+..... ....+|+.||+.-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rI 34 (49)
T COG1996 3 AMMEYKCARCGREVELDQE---------TRGIRCPYCGSRI 34 (49)
T ss_pred ceEEEEhhhcCCeeehhhc---------cCceeCCCCCcEE
Confidence 3467899999998742211 2478999999864
No 473
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.58 E-value=22 Score=32.94 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=58.5
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--C----CC-CCC
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--C----RL-PFA 234 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~----~l-p~~ 234 (333)
...++.+||=+|+|. |..+..+++......|+++|.++..++.+++. | .. .++...- . .+ ...
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g---a~--~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G---AT--DFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C---CC--cEeccccccchHHHHHHHHh
Confidence 345678898888865 66666677765233799999998888777542 1 11 1111100 0 00 011
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 275 (333)
.+.+|+|+-.. .. ...+.+..+.|+++ |.+++...
T Consensus 252 ~~g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 GGGVDYSFECT-----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCCEEEECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 24588887432 22 24577888899885 99887654
No 474
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=81.55 E-value=4 Score=34.08 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=52.0
Q ss_pred HHHHHhhcccCCC-eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957 156 KMAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (333)
Q Consensus 156 ~~~~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (333)
+.+.+++...++. .|+.+|||.=.....+....+...++-+|. +++++.-++.++..+.....+..++.+|+.+..
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~ 145 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI 145 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence 4555666544454 899999999888877877654446666664 555555555555532100123457888887521
Q ss_pred -------CCCCCcceEEeccccccCC
Q 019957 233 -------FASGFVDAVHAGAALHCWP 251 (333)
Q Consensus 233 -------~~~~~fD~V~~~~vl~h~~ 251 (333)
+....--++++-+++.+++
T Consensus 146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 146 DALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 2233344666667777764
No 475
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.40 E-value=3.2 Score=37.99 Aligned_cols=123 Identities=18% Similarity=0.165 Sum_probs=73.1
Q ss_pred EEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEeccccc
Q 019957 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAALH 248 (333)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~ 248 (333)
|+|+-||.|.+..-+...|. ..+.++|+++.+.+.-+.+. +. .++.+|+.++... -..+|+++...-..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence 68999999999999998874 24678999999888777753 22 3455777665421 23589887643222
Q ss_pred c---------CCChH-HHHHHHHHhc---cCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957 249 C---------WPSPS-NAVAEISRIL---RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315 (333)
Q Consensus 249 h---------~~d~~-~~l~~~~r~L---kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~ 315 (333)
. +.|+. .++.++.+++ +|. +++.+.... + .. ....-....+...|+..|+.
T Consensus 71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~-----l-~~--------~~~~~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKG-----L-VS--------HDKGRTFKVIIETLEELGYK 134 (315)
T ss_pred ccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHH-----H-Hh--------cccchHHHHHHHHHHhCCCE
Confidence 1 22443 3444444444 553 444443221 0 00 00012245778888899997
Q ss_pred EEE
Q 019957 316 NYT 318 (333)
Q Consensus 316 ~v~ 318 (333)
+..
T Consensus 135 v~~ 137 (315)
T TIGR00675 135 VYY 137 (315)
T ss_pred EEE
Confidence 644
No 476
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=81.37 E-value=0.88 Score=33.32 Aligned_cols=35 Identities=26% Similarity=0.630 Sum_probs=26.1
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (333)
++-||.||.-|....... -..+.|+.|...|++..
T Consensus 1 m~FCP~Cgn~Live~g~~-------~~rf~C~tCpY~~~I~~ 35 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGES-------CNRFSCRTCPYVFPISR 35 (105)
T ss_pred CcccCCCCCEEEEecCCe-------EeeEEcCCCCceeeEee
Confidence 356999999887655421 25789999999887764
No 477
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=81.30 E-value=19 Score=32.92 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=60.4
Q ss_pred hcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCC-C-CCCCC
Q 019957 162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCR-L-PFASG 236 (333)
Q Consensus 162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~-l-p~~~~ 236 (333)
....++.+||=.|+ |.|.++..+++.. +.++++++.++...+.+++.+.. ..-+..... +..+ + ....+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa-----~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF-----DDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC-----ceeEEcCCcccHHHHHHHhCCC
Confidence 44567889998886 3577777777764 44899999888877777653211 000111111 1110 0 01124
Q ss_pred CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
.+|+|+-.- . ...+.+..+.|+++|.++...
T Consensus 221 gvd~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 688887532 2 245788899999999998654
No 478
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.29 E-value=19 Score=33.46 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=59.0
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCC-----CC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----PF 233 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p~ 233 (333)
....++.+||=+|+|. |.++..+++.....+++++|.++..++.+++. | -..++...- ..+ ..
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~v~~~ 253 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----G-----VTEFVNPKDHDKPVQEVIAEM 253 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-----CceEEcccccchhHHHHHHHH
Confidence 3445688999998765 66666777765333799999999888877552 1 111221110 000 01
Q ss_pred CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (333)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 275 (333)
..+.+|+|+-. +.. ...+....+.+++| |++++...
T Consensus 254 ~~~~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 254 TGGGVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred hCCCCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 12357877643 222 34577778889996 99887654
No 479
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=81.29 E-value=0.79 Score=27.98 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=13.8
Q ss_pred ecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (333)
-.||+|++.-....... ....+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFri~~d----~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDD----KDGRGTWICRQCGG 34 (40)
T ss_dssp E--TTTT-TTTEEEETT--------S-EEETTTTB
T ss_pred CCCCCCcCccccccCcC----cccCCCEECCCCCC
Confidence 47999999532220000 11237899999943
No 480
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.17 E-value=6 Score=34.01 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=50.2
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (333)
Q Consensus 154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (333)
..+.+....+.....-|.+||.|.|..++.+...+ ..+...+|.+...+.-.+...+.. ..+..+..+|+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcC----CcceEEecccccee
Confidence 34555555555556789999999999999999886 447888888876665555444432 33666667776543
No 481
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.17 E-value=25 Score=31.73 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=57.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (333)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (333)
...++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ + | +.... +.... ...+.+|+|
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---g------~~~~~-~~~~~-~~~~~~d~v 218 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---G------VETVL-PDEAE-SEGGGFDVV 218 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---C------CcEEe-Ccccc-ccCCCCCEE
Confidence 345677888888654 55555555553 3479999999888877765 2 1 11111 11111 234568988
Q ss_pred EeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+-... ....+..+.+.|+++|.++...
T Consensus 219 id~~g------~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 219 VEATG------SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EECCC------ChHHHHHHHHHhhcCCEEEEEc
Confidence 86421 1345778888999999998743
No 482
>PRK05978 hypothetical protein; Provisional
Probab=81.08 E-value=1 Score=36.15 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=21.2
Q ss_pred eecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (333)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (333)
..+||.||+.-.... +..-.-+|+.||..|...
T Consensus 33 ~grCP~CG~G~LF~g--------~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 33 RGRCPACGEGKLFRA--------FLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCcCCCCCCCccccc--------ccccCCCccccCCccccC
Confidence 457999999543321 111245799999988544
No 483
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.05 E-value=32 Score=31.12 Aligned_cols=93 Identities=18% Similarity=0.092 Sum_probs=56.5
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (333)
....++.+||=.|+|. |..+..+++.. +.+++.++.+....+.+++. | ++... +.... ..+.+|+
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~----g------~~~~~-~~~~~--~~~~vD~ 228 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL----G------ADWAG-DSDDL--PPEPLDA 228 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh----C------CcEEe-ccCcc--CCCcccE
Confidence 3445667777788764 55555555553 45899998888766666431 1 11111 11111 2346888
Q ss_pred EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
++.... . ...+.++.+.|+++|.++...
T Consensus 229 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAP-----V-GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCC-----c-HHHHHHHHHHhhcCCEEEEEc
Confidence 764321 1 246889999999999999764
No 484
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.81 E-value=8.2 Score=35.48 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=55.6
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCcCC---CCCeEEEEccCCCCCCCC
Q 019957 168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTIL---TSNLALVRADVCRLPFAS 235 (333)
Q Consensus 168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~~---~~~i~~~~~d~~~lp~~~ 235 (333)
.+|-=||+|+ | .++..++..|. +|+.+|++++.++.++..+.. .+... ..++.+. .++++ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hh
Confidence 5788899985 4 45566666665 999999999888776654431 11100 0111211 11111 01
Q ss_pred CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...|+|+-. +.|.+.--..+++++.+.++|+.+|.-.+
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 245665532 22222222467899999999988554444
No 485
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.75 E-value=18 Score=31.65 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=44.4
Q ss_pred CCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC----
Q 019957 167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 234 (333)
Q Consensus 167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 234 (333)
+.++|=.|++.| .++..+.+.|. +|+.+|.++..++...+.+ ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 568888886543 24455555565 8999999876554443322 235778888987642 11
Q ss_pred -CCCcceEEeccc
Q 019957 235 -SGFVDAVHAGAA 246 (333)
Q Consensus 235 -~~~fD~V~~~~v 246 (333)
-+..|+++.+..
T Consensus 77 ~~g~id~lv~~ag 89 (261)
T PRK08265 77 RFGRVDILVNLAC 89 (261)
T ss_pred HhCCCCEEEECCC
Confidence 146798887654
No 486
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.67 E-value=31 Score=29.67 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=56.2
Q ss_pred CCeEEEEcCCc--CH-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957 167 GGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (333)
Q Consensus 167 ~~~vLDiGcG~--G~-~~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (333)
+.++|-.|+.. |. +...+.+.+. +|++++.+. ...+.....++.. ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 56888888643 32 3344444554 788887654 2333333333332 235778888987642 00
Q ss_pred --CCCcceEEeccccccCC-------------ChHHHHHHHHHhccCCcEEEEEE
Q 019957 235 --SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 235 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
-+..|+|+.+....... -+..+++.+.+.++.+|.+++..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13578877654322110 12356677777776677766654
No 487
>PRK08324 short chain dehydrogenase; Validated
Probab=80.56 E-value=19 Score=36.75 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCc--CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957 166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (333)
Q Consensus 166 ~~~~vLDiGcG~--G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (333)
.+++||=.|++. |. +...+.+.|. +|+.+|.++..++.+.+.+.. ..++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 457889888643 32 3444555554 899999998777666554332 136778888886532 11
Q ss_pred --CCCcceEEeccccccCCC-------------------hHHHHHHHHHhccC---CcEEEEEEe
Q 019957 235 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF 275 (333)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d-------------------~~~~l~~~~r~Lkp---gG~l~i~~~ 275 (333)
-+.+|+|+.+...-.... ...+++.+.+.+++ ||.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 236899987665332211 22446666777766 677777553
No 488
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=32 Score=31.32 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHH
Q 019957 158 AQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQC 206 (333)
Q Consensus 158 ~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a 206 (333)
+..++.. .....|+.+|||.-.+...|...+ ....++=+|..+......
T Consensus 78 v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 78 VRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred HHHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 3334433 335679999999998888888876 456677788777665555
No 489
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.07 E-value=9.3 Score=34.72 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=51.9
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957 168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (333)
Q Consensus 168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (333)
.+|.=||+|. | .++..+.+.+...+|+++|.++..++.+++ .+. . .....+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~----~-~~~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL----G-DRVTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC----C-ceecCCHHHH---hcCCCEEEECC
Confidence 4788899886 4 455566665533489999999987766654 111 1 1111122111 13578888754
Q ss_pred ccccCCChHHHHHHHHHhccCCcEEEE
Q 019957 246 ALHCWPSPSNAVAEISRILRSGGVFVG 272 (333)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~l~i 272 (333)
-... ...+++++...+++|..++.
T Consensus 75 p~~~---~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVGA---SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHHH---HHHHHHHHHhhCCCCCEEEe
Confidence 3322 23456667677788775544
No 490
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=79.96 E-value=0.8 Score=37.42 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=24.9
Q ss_pred cccccCeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957 54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (333)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (333)
.......+.||.|+........ ....|.|+.||..
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~eA--------~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNEA--------MELNFTCPRCGAM 137 (158)
T ss_pred hccCCCeEECCCCCcEeeHHHH--------HHcCCcCCCCCCE
Confidence 3445678999999986654432 2347999999865
No 491
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=79.88 E-value=1.1 Score=40.53 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=24.7
Q ss_pred cccCeecccCCCccccccC-CCCccccccccCceeeCCCCccc
Q 019957 56 LEGDLFSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY 97 (333)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~~-~~~~~~~~~~~~~~~C~~C~~~~ 97 (333)
...+.+.||.|++.-.... ....+..+-..-.+.|.+||+.|
T Consensus 254 ~~t~~~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w 296 (299)
T TIGR01385 254 AVTDLFTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRW 296 (299)
T ss_pred CCcccccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCee
Confidence 3567899999998432110 00111222233477899999876
No 492
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.63 E-value=36 Score=30.87 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----------
Q 019957 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 232 (333)
Q Consensus 166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 232 (333)
.+.++|=.|++.| ..+..|++.+. +|+.++.+....+.+.+.+..... ..++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVP--DAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEecCCCHHHHHHHHHHHH
Confidence 3568888887655 24455565554 899999887766666555543211 336888899987642
Q ss_pred CCCCCcceEEecccc
Q 019957 233 FASGFVDAVHAGAAL 247 (333)
Q Consensus 233 ~~~~~fD~V~~~~vl 247 (333)
-..+..|+++.+..+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 112468998876554
No 493
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.54 E-value=4.4 Score=32.56 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=25.1
Q ss_pred EEcCCcC--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH
Q 019957 172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF 209 (333)
Q Consensus 172 DiGcG~G--~~~~~l~--~~~~~~~v~g~D~s~~~~~~a~~~ 209 (333)
|||++.| .....+. ..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 346677999999999998888887
No 494
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.54 E-value=31 Score=31.44 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=56.1
Q ss_pred CeEEEEcC--CcCHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCCCcc
Q 019957 168 GLLVDVSC--GSGLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFVD 239 (333)
Q Consensus 168 ~~vLDiGc--G~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD 239 (333)
.+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++.+.. -.++...-.++ ....+.+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa--------~~vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGF--------DAAINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCC--------cEEEECCCCCHHHHHHHHCCCCce
Confidence 78988886 4577888787775 44 799999888877766653211 11221111111 01124689
Q ss_pred eEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
+|+-.- ... .+.+..+.|+++|+++...
T Consensus 227 ~vid~~-----g~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 227 VYFDNV-----GGE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEECC-----CcH--HHHHHHHHhccCCEEEEEe
Confidence 887432 222 3578889999999998754
No 495
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.52 E-value=8.9 Score=34.34 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=49.8
Q ss_pred eEEEEcCCc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957 169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (333)
Q Consensus 169 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (333)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+. + .+.....+.+. -...|+|+..--
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~----g-----~~~~~~~~~~~----~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER----G-----LVDEASTDLSL----LKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC----C-----CcccccCCHhH----hcCCCEEEEcCC
Confidence 466678885 456677776664 899999999887776652 1 11111111111 235788887643
Q ss_pred cccCCChHHHHHHHHHhccCCcEE
Q 019957 247 LHCWPSPSNAVAEISRILRSGGVF 270 (333)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~l 270 (333)
...+ .++++++...++++.++
T Consensus 67 ~~~~---~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGLL---LPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHH---HHHHHHHHHhCCCCcEE
Confidence 2221 34567777777776444
No 496
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=79.49 E-value=0.79 Score=38.66 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=22.2
Q ss_pred ecccCCCccccccCCCCc----cccccccCceeeCCCCcccc
Q 019957 61 FSCPICYEPLIRKGPTGL----TLGAIYRSGFKCRKCDKTYS 98 (333)
Q Consensus 61 l~CP~C~~~l~~~~~~~~----~~~~~~~~~~~C~~C~~~~~ 98 (333)
+.||.|+........ .. -+..+....+.|++||..+.
T Consensus 1 ~~Cp~C~~~~~~~~~-~~~~IP~F~evii~sf~C~~CGyr~~ 41 (192)
T TIGR00310 1 IDCPSCGGECETVMK-TVNDIPYFGEVLETSTICEHCGYRSN 41 (192)
T ss_pred CcCCCCCCCCEEEEE-EEcCCCCcceEEEEEEECCCCCCccc
Confidence 469999975322110 11 13444455788999998763
No 497
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.44 E-value=7.2 Score=36.71 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Q 019957 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI 210 (333)
Q Consensus 156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 210 (333)
+.-.+.++..++.+||-|.+|....+. +...+| .+|++||+|+......+=++
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~-yL~~~P-~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALD-YLLAGP-KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHH-HHhcCC-ceEEEEeCCHHHHHHHHHHH
Confidence 344556777888999999765544444 454553 59999999998877666544
No 498
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=79.39 E-value=37 Score=30.94 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=58.3
Q ss_pred hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC---CC-C-CC
Q 019957 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-P-FA 234 (333)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-p-~~ 234 (333)
....++.+||-.|+|. |..+..+++.. +.. +++++.++...+.+++. + ...++...-. .+ . ..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g-----~~~~~~~~~~~~~~~~~~~~ 224 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G-----ADDTINPKEEDVEKVRELTE 224 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C-----CCEEecCccccHHHHHHHhC
Confidence 3345677898888765 66766677664 335 99999888776665431 1 1112111100 00 1 11
Q ss_pred CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (333)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 274 (333)
...+|+|+... .....+..+.+.|+++|.++...
T Consensus 225 ~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 225 GRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 23589988542 12345788899999999988765
No 499
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=79.29 E-value=0.9 Score=37.90 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=25.8
Q ss_pred cCcccccCeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957 52 QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (333)
Q Consensus 52 ~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (333)
.........+.||.|+........ ....|.|+.||..
T Consensus 109 l~~e~~~~~Y~Cp~C~~rytf~eA--------~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRFTFDEA--------MEYGFRCPQCGEM 145 (178)
T ss_pred hhhccCCCEEECCCCCcEEeHHHH--------hhcCCcCCCCCCC
Confidence 334445678999999987654432 2358999999865
No 500
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.99 E-value=27 Score=35.97 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=63.9
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CcCC-------CCCeEEEEccCCCC
Q 019957 168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTIL-------TSNLALVRADVCRL 231 (333)
Q Consensus 168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~~-------~~~i~~~~~d~~~l 231 (333)
.+|--||+|+ | ..+..++..|. +|+.+|.+++.++.+++++... +... ..++... .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 4688999997 3 45556666665 9999999999988877655321 1000 0122221 122111
Q ss_pred CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (333)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 276 (333)
...|+|+-. +.|.+.--.++++++.++++|+.+|.-.|..
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 391 ----DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred ----cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 356777643 4455544568999999999999888766644
Done!